ID:

dsi_11149

 Coordinate:

3l:23812711-23812860 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.4 -10.4 -10.4 -9.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGGACAGCTTGGAACTTTCTCAGCTTACGTCAGGAAATTCTAGAAAACAGGTAAAACACAGATTCTATATGTCGATCTACTTAATTGTAAGTATCAAACTGAACTCAACTCCTAATTCTGACTTCGTCTAAAATTATATTGTAATCGGTATTGAGCTTTGAAGTTCTTTCTTGTTTTGCCTTTGGTTTATGTATAAAGTCCCGAAATCTGAGTATCCTCAATTGTGGGAGCGTGGGGTTGCTAGCTGTCG
***************************************************...................((.....................(((((((((...(((...........(((...)))..........)))...))))).))))))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M024
male body
........TTGGAACTTTCTCAGCTTACGTCAGGA....................................................................................................................................................................................................................... 27 0 1 25.00 25 15 4 5 1 0 0 0 0 0
...................................................TAAAACACAGATTCTATATGTCGATC............................................................................................................................................................................. 26 0 1 14.00 14 12 1 1 0 0 0 0 0 0
........TTGGAACTTTCTCAGCTTACGTCAGG........................................................................................................................................................................................................................ 26 0 1 12.00 12 9 1 2 0 0 0 0 0 0
.........TGGAACTTTCTCAGCTTACGTCAGG........................................................................................................................................................................................................................ 25 0 1 6.00 6 4 2 0 0 0 0 0 0 0
................................................................................................................................TAAAATTATATTGTAATCGGTATTGAGC.............................................................................................. 28 0 1 6.00 6 5 0 0 1 0 0 0 0 0
.....................................TTCTAGAAAACAGGTAAAACACAGA............................................................................................................................................................................................ 25 0 1 5.00 5 4 0 0 1 0 0 0 0 0
.........................TACGTCAGGAAATTCTAGAAAACAGGC...................................................................................................................................................................................................... 27 1 1 5.00 5 0 0 2 0 2 0 0 0 1
...................TCAGCTTACGTCAGGAAATTCTAGAAAA........................................................................................................................................................................................................... 28 0 1 5.00 5 1 0 2 1 0 0 0 1 0
.........................TACGTCAGGAAATTCTAGAAAACAGG....................................................................................................................................................................................................... 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................TATATGTCGATCTACTTAATTGTAAGTA............................................................................................................................................................. 28 0 1 4.00 4 3 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................TATGTATAAAGTCCCGAAATCTGAGTA.................................... 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0
........................TTACGTCAGGAAATTCTAGAAAAC.......................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........TGGAACTTTCTCAGCTTACGTCAGGAAA..................................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0
AGGACAGCTTGGAACTTTCTCAGCT................................................................................................................................................................................................................................. 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.................................................................TATATGTCGATCTACTTAATTGTA................................................................................................................................................................. 24 0 1 2.00 2 0 1 1 0 0 0 0 0 0
...................................................................TATGTCGATCTACTTAATTGTAAGTA............................................................................................................................................................. 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0
.............................CCAGGAAATTCTAGAAAACAGGTAAAAC................................................................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................TATATGTCGATCTACTTAATTGTAAGT.............................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TCAATTGTGGGAGCGTGGGGTTGCTA....... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................CGTCAGGAAATTCTAGAAAACAGGCAA.................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 1 0
.........................TACGTCAGGAAATTCTAGAAAACGGGC...................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 0 1 0 0 0 0
........TTGGAACTTTCTCAGCTTACGTCAGGG....................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................TCAGGAAATTCTAGAAAACAGGTAAA................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........TGGAACTTTCTCAGCTTACGTCAGGAAAT.................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................TATTGTAATCGGTATTGAGC.............................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................TCAGCTTACGTCAGGAAATTCTAGAAA............................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCTGAGTATCCTCAATTGTGGGAGCGTG................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TCCTCAATTGTGGGAGCGTGGGGT............ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................TTCTAGAAAACAGGTAAAACACAGATTC......................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................ATCGGTATTGAGCTTTGAAGTTCTTT................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........TTGGAACTTTCTCAGCTTACGTCAGGAAA..................................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........TGGAACTTTCTCAGCTTACGTCAGGA....................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................TATATGTCGATCTACTTAATTGTAAG............................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................TCTGAGTATCCTCAATTGTGGGAGCG.................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...............TTTCTCAGCTTACGTCAGGA....................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.........................TACGTCAGGAAATTCTAGAAAACAGGTA..................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................AGGAAATTCTAGAAAACAGGTAAAACAC............................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................ATCGGTATTGAGCTTTGAAGTTCTT.................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................CAGGAAATTCTAGAAAACAGGTAAAACAC............................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................CAGGAAATTCTAGAAAACAGGTAAAACA................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................TCTAGAAAACAGGTAAAACACAGA............................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TAAAGTCCCGAAATCTGAGTATCCTC............................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................TTACGTCAGGAAATTCTAGAAAACAGG....................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................TTGTAATCGGTATTGAGCTTTGAAG....................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................TACGTCAGGAAATTCTAGAAAACAGGT...................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................TTGTAATCGGTATTGAGCTTTGAAGT...................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................TGAACTCAACTCCTAATTCTGACTT.............................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................TACGTCAGGAAATTCTAGAAAACA......................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........TGGAACTTTCTCAGCTTACGTCAGGAA...................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.................TCTCAGCTTACGTCAGGAAATTCTAGAAAA........................................................................................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................TAAAACACAGATTCTATATGTCGA............................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................TATTGTAATCGGTATTGAGCTTTGAAG....................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................CAGGAAATTCTAGAAAACAGGCG..................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................................................AAACACAGATTCTATATGTCGATCTACTT........................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................AGCTTACGTCAGGAAATTCTAGAAAAC.......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTTATGTATAAAGTCCCGAAATCTGAGA..................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................TTACGTCAGGAAATTCTAGAAAACAGGC...................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................TCGGTATTGAGCTTTGAAGTTCTTTC................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........GGAACTTTCTCAGCTTACGT............................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
......................................................AACACAGATTCTATATGTCGATCTACTT........................................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................TATGTCGATCTACTTAATTGTAAGTATC........................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TAAAGTCCCGAAATCTGAGTATCCTCAAT............................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....AGCTTGGAACTTTCTCAGC.................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0
......................GCTTACGTCAGGAAATTCTAGAAA............................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
AGGACAGCTTGGAACTTTCTCAGC.................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................AGCTTACGTCAGGAAATTCTAGAAA............................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
........................TGACGTCAGGAAATTCTAGAAAAC.......................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................CAGGAAATTCTAGAAAACAGGTAAAAC................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................GCTTACGTCAGGAAATTCTAGAAAACAGG....................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........TGGAACTTTCTCAGCTTACGTCAGGAAATT................................................................................................................................................................................................................... 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................CAGGTAAAACACAGATTCTATATGTCGAT.............................................................................................................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................TTCGTCTAAAATTATATTGTAATCGGTA.................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................AGTTCTTTCTTGTTTTGCCTTTGGT................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................TGACTTCGTCTAAAATTATATTGTAAT......................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................TCCTAATTCTGACTTCGTCTAAAAT.................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................TCGGTATTGAGCTTTGAAGTTCTTT................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........TTGGAACTTTCTCAGCTTACGTCAGGAA...................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................TACGTCAGGAAATTCTAGAAAACAG........................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................TCAACTCCTAATTCTGACT............................................................................................................................... 19 0 2 0.50 1 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................GAAGTTCTATCTGGTTTTGC....................................................................... 20 2 2 0.50 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................TTTCGTTTATGTATAAA..................................................... 17 1 9 0.11 1 0 0 0 1 0 0 0 0 0
..............................................................................................CAAACTGAACTCAAATCT.......................................................................................................................................... 18 2 20 0.10 2 0 0 0 2 0 0 0 0 0
...............................AGGAAATTCAAGAAAA........................................................................................................................................................................................................... 16 1 20 0.10 2 0 0 0 2 0 0 0 0 0
...............................................................................................................................................................................................................................GTGGGAGCGTAGGGTCG.......... 17 2 13 0.08 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................GGTATTGAGTTTTGA......................................................................................... 15 1 16 0.06 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................ATTGAAGATCTTTCTTGATT.......................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................TGTGGGAGCGTAGGTTT........... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................GTGTGAAGTTTTTTCTTGTTT.......................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TCCTGTCGAACCTTGAAAGAGTCGAATGCAGTCCTTTAAGATCTTTTGTCCATTTTGTGTCTAAGATATACAGCTAGATGAATTAACATTCATAGTTTGACTTGAGTTGAGGATTAAGACTGAAGCAGATTTTAATATAACATTAGCCATAACTCGAAACTTCAAGAAAGAACAAAACGGAAACCAAATACATATTTCAGGGCTTTAGACTCATAGGAGTTAACACCCTCGCACCCCAACGATCGACAGC
**********************************************************************************************...................((.....................(((((((((...(((...........(((...)))..........)))...))))).))))))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..........................................................................................................TTGAGGATTAAGACTGAA.............................................................................................................................. 18 0 2 2.50 5 0 5 0 0 0
...................................................................ATACAGCTAGATGAATTAACATTCAT............................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0
...................................TTAAGATCTTTTGTCCATTTTGTGT.............................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................TCAAGAAAGAACAAAACGGAAACCAAAT............................................................. 28 0 1 1.00 1 1 0 0 0 0
.....................................................................ACAGCTAGATGAATTAACATTCATAGTT......................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0
...........................................................................................................TGAGGATTAAGACTGAA.............................................................................................................................. 17 0 2 1.00 2 0 2 0 0 0
.......................................................................................ATTCATAGTTTGACTTGAGTTGAGGAT........................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0
..................................................................................................................................................................CAAGAAAGAACAAAACGGAAACCAAAT............................................................. 27 0 1 1.00 1 1 0 0 0 0
.......................GAATGCAGTCCTTTAAG.................................................................................................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0
..........................................................................................................TTGAGGATTAAGACTGA............................................................................................................................... 17 0 2 0.50 1 0 1 0 0 0
..........................................................................................................TTGAGGATTAAGACTG................................................................................................................................ 16 0 2 0.50 1 0 1 0 0 0
.....................................................................................................TTGAGTTGAGGATTAAG.................................................................................................................................... 17 0 2 0.50 1 0 1 0 0 0
..........................................................................................................TTGAGGATTAGGACTGA............................................................................................................................... 17 1 2 0.50 1 0 1 0 0 0
..............................................................................................GGTTGACTCGATTTGAGGA......................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:23812661-23812910 + dsi_11149 AGGACAGCTTGGA--ACTTTCTCAGCTTACGTCAGGAAATTCTAGAAAACAGGTAAAACACAGATTCTATATGTCGAT-CTACTTAATTGTAAGTATCAAACTGAACTCAACTCCTAA-TTCTGACTTCGTCTAAAATTATATTGTAATCGGTATT-GAGC-------TTTGAAGTTCTTTC------------------------------------TTGTTTTG--CCTTTGGTTTATGTA----------------------------------------------------TAAAGTCCCGAAATCTGAGTAT------------------CCTCAATTGTGGGAGCGTG------------GGGTTGCTAGCTGTCG
droSec2 scaffold_61:73472-73719 + AGGACAGCTTGGA--ACTTTCTCAGCTTACGTCAGGAAATTCTAGAAAACAGGTAAAACAGATTCTATA--TGTCGAT-CTACTTAATTGTAAGTATCAAACTGAACTCAACTCCTAA-TTCTGACTTCGTCTAAAATTATATTGTAATCGGTATT-GAGC-------TTTGAAGTTCTTTC------------------------------------TTGTTTTG--CCTTTGGTTTATGTC----------------------------------------------------TAAAGTCCCGAAATCTGAGTAT------------------CCTCAATTGTGGGAGCGTG------------GGGTTGCTAGCTGTCG
dm3 chr3LHet:2263486-2263640 + AGGACAGCTTGGA--ACTTTCTCAGCTTACGTCAGGAAATTCCAGAAAACAGGTAAAATACAGTGGCTTCATTTTGAT-TTACTTAGTTGTAAGCGTCCAACAGAACTCAACTCCTGAACTTATATTGTA-----------------ATAGGTATT-GAGC-------TTAAGAGTTCTTTC------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4929:22525122-22525295 + AAAAAA-------------------------------------------TAAGTAA----------------ATAGATTTTCCTTAGTTTCAAATCTTAGACTAAACTTAACTCCTAA-TTCTAACTTTATCTGCGATTATACC----TCGGCTAT-GGGCTCTGAGCTTTTGAGCT-----------------------------------------------------------------------------------------------------------------------------TTTGAATCGAAGTTT------------------CTTCAAATGTGGGAATGTGTTGATAATGCGACGGTAGCTAGTTGTTA
droYak3 v2_chr3h_random_002:865630-865864 - TAGT--------------------------------------------------------------------------------TAATTGTAGTTCTCAAACTGAACTCAACTCCTAA-TTCAGACTTCTTCTACGATTATACC----TAGGTCTT-AAGC-------TT-AGAGCGTT-TA----TGAGTGGCTTTCAA-------AAATTATCTTTTAACTT-------------TGTGACAATTCTTGTTTTGTTCTTATATTGTGAGCTAAGTCCCGAATTCGTTTAT----GCAGCCCCGAAATCTGAGTAT------------------CCTAA------GGAAGGTGCTGATAGTGCGGCGGTCGCTAGCTATTG
droEug1 scf7180000409672:4770047-4770229 - TA------------------------------------------------------------------------------------TTGATAAATCTCAAACTGAACTCTCTGTCTAA-CTCCTACTTCATTTACGATCATACC----TCGGTTTT-GAGC-------TTTATAGCTTTTTG----TGAGTGGGTTTTCTTACTATTGATTGACTCTCTAACTTTGGACTTTAGACTCGAGAC----------------------------------------------------TTGGGTCGCGAAATCTGAGTAT------------------CCTGAATTGTGGGAACGTG----------------------------
droBia1 scf7180000299500:4297-4484 - ACAATTTTTATAT--TT--------------GAG-------------------AA----------------CACCGAC-TTG-CTATTGACAAATCTCAAACTGAAATCGCTCCCTAA-CTCCTACTTCATTTA--------------------------------------GAGCTTTTTG----TGAGTGGCTTTTGTTGCTATTGAGTGACTCCCTAACTTTGGACGTTAGATTCCAGAC----------------------------------------------------TTGGGTCCCGAAATCTGAGTAT------------------CCTGAATTGTGGGAACGTG----------------------------
droTak1 scf7180000415184:59311-59419 + CTAACTCTTAATT----------------CAAAAAGCACATTAAAAA-------------------------------------------------------TGCACTTAATT-------------------------------------------------------ATTGAAGATTTTTT------------------------------------GTA--TTCCATTTTAGGTTTTAGCC----------------------------------------------------AAGCTTTTCATAATTTTAATAT------------------TCTCAATT---------------------------------------
droEle1 scf7180000490226:12063-12277 - CCTAAT-------------------------------------------------------------------------------TGTTTTAGGTCTCAAACTGAATTCCATCGCCAA-CTCATACTTCTTTTACGATCAAACC----TCAGTTTT-GAGC-------TTTGGAGCTTTTTA---ATGAGTGATTTGAATGTTTATTGAGTGGCTTTCAGA-TTTGTACTTTGGAC-CAAGACAGTTCT------------------------TTGTTCCGATCTTGGTTACGACTTGGGTCCCGAAATCTGAGTAT------------------CCTGAATTGTGAGAACGTG----------------------------
droRho1 scf7180000764499:19396-19603 - GGAAGAACA----------------------------------------------------------------CCGAT-TCG-ATAGTTACAAGTTTCAAACTGAACTCGCTCCCTAA-CTCGTACTTTATCTACGATCAAACT----TCGGTTCT-GAGC-------TTTGGAGCTTTTTA---ATGAGTGGCTTTAGGGTTTATTGAGTGGCTTTCATA-TTTGTACTTTGT-------------------------------------------TCTCATCTTGTTTATGATTTCGGTCTCGAAATCTGAGTAT------------------CCTGAATCGTGGGAATG------------------------------
droFic1 scf7180000453919:12663-12917 + ACAAATATTCTTTATTT--G----------GAAG-------------------AA----------------CACCGAC-CTG-TCACTTGCAAGTCTCAAACTGAACTCAACTCCTAA-CTCTGACTTCCTTTACTATCATACC----TCGGTTGTGGAGC-------TTTCGAGCTTTACTTGAAT--GTGTTTATTGTTTAGGCTAAGA-ACTTTCCCGA-TTGGACTTTGGATTCT----------------------------------TGGATTTGAATTTGTTTATGGCCTTGGTCCCGAAATTTGAGTTTACGACTTTGGTTTGGGAATCTGAATTATGGGAACGTG----------------------------
droKik1 scf7180000301862:12510-12567 + ATAATAATTTGGC--CCTTTCTCAGTTAACAGCAGGAAACTCTAGGAAGCAGGTAAATCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13082:2974654-2974707 + AGGATAATATGAC--TTTGTCGCAGCTAACATTAGGAAACTCAAGAAAGCAGGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000391515:8033-8123 + CAACCTAC----------------------------------------------------------------------------TACTTGTAGATATCAAACTGAACTCAACTCCTAA-CTCTGACTTCTTTTACGATCATACC----TCGGTTGTGGAGC-------TTTCGAGCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 2:25271892-25271947 + AAGAGAACTTGGC--GCTGTCTCATCTAACTATAGGCAACTCAAGGAAGCAGGTAAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_6:600163-600218 + AAGAGAACCTGGC--GCTGTCTCATCTAACTGTAGGGAACTCAAGGAAGCAGGTAAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004969:191312-191425 + AAATAT-----------------------------------------------------------------------------------------TCTACTGTAAAGTCGTCTTCTAA-TTCTAGCCGCATGCGTGTTAGTTTTGAACTCGGGTTC-GCAC-------TGTGAAGTGTTTTT------------------------------------CATATATA--TATATAGTCTGTATA----------------------------------------------------TATAGTC--------------------------------------------------------------------------------
droVir3 scaffold_12963:2016948-2017014 - ACGATCATCTAAC--GCTTTCGCAACTAACAGTTCGAAATTCAAGAAAACAGGCCGCGCAAAAGTTCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:27142959-27143035 - AAGATCACCTGAC--CCTATCGCAGCTGACGGTGCGAAACACGAGAAAACAGGCGGCTCAGAAGTTCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGTTGCTC
droGri2 scaffold_15126:1019445-1019511 - ATGATCACTTGAC--CCTCTCCCAGTTAACCGTGCGCAACTCGAGGAAACAAGCTGCACAGAAATTCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGGACAGCTTGGA--ACTTTCTCAGCTTACGTCAGGAAATTCTAGAAAACAGGTAAAACACAGATTCTATATGTCGAT-CTACTTAATTGTAAGTATCAAACTGAACTCAACTCCTAA-TTCTGACTTCGTCTAAAATTATATTGTAATCGGTATT-GAGC-------TTTGAAGTTCTTTC------------------------------------TTGTTTTG--CCTTTGGTTTATGTA----------------------------------------------------TAAAGTCCCGAAATCTGAGTAT------------------CCTCAATTGTGGGAGCGTG------------GGGTTGCTAGCTGTCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........TTGGA--ACTTTCTCAGCTTACGTCAGGA.........................................................................................................................................................................................................................................................................................................................................................27125.0025000000515140000000
.....................................................TAAAACACAGATTCTATATGTCGAT-C..............................................................................................................................................................................................................................................................................................................26114.0014000000112010000000
........TTGGA--ACTTTCTCAGCTTACGTCAGG..........................................................................................................................................................................................................................................................................................................................................................26112.001200000029010000000
.........TGGA--ACTTTCTCAGCTTACGTCAGG..........................................................................................................................................................................................................................................................................................................................................................2516.00600000004020000000
....................................................................................................................................TAAAATTATATTGTAATCGGTATT-GAGC-------......................................................................................................................................................................................................................2816.00600000005100000000
.......................................TTCTAGAAAACAGGTAAAACACAGA..............................................................................................................................................................................................................................................................................................................................2515.00500000004100000000
...........................TACGTCAGGAAATTCTAGAAAACAGGC........................................................................................................................................................................................................................................................................................................................................2715.00501000020000002000
.....................TCAGCTTACGTCAGGAAATTCTAGAAAA.............................................................................................................................................................................................................................................................................................................................................2815.00500000021100010000
...........................TACGTCAGGAAATTCTAGAAAACAGG.........................................................................................................................................................................................................................................................................................................................................2614.00400000004000000000
...................................................................TATATGTCGAT-CTACTTAATTGTAAGTA..............................................................................................................................................................................................................................................................................................2814.00400000003010000000
.............................................................................................................................................................................................................................................TATGTA----------------------------------------------------TAAAGTCCCGAAATCTGAGTA..................................................................2713.00300000003000000000
..........................TTACGTCAGGAAATTCTAGAAAAC............................................................................................................................................................................................................................................................................................................................................2412.00200000002000000000
.........TGGA--ACTTTCTCAGCTTACGTCAGGAAA.......................................................................................................................................................................................................................................................................................................................................................2812.00200000002000000000
AGGACAGCTTGGA--ACTTTCTCAGCT...................................................................................................................................................................................................................................................................................................................................................................2512.00200000001010000000
...................................................................TATATGTCGAT-CTACTTAATTGTA..................................................................................................................................................................................................................................................................................................2412.00200000010010000000
.....................................................................TATGTCGAT-CTACTTAATTGTAAGTA..............................................................................................................................................................................................................................................................................................2612.00200000010010000000
...................................................................TATATGTCGAT-CTACTTAATTGTAAGT...............................................................................................................................................................................................................................................................................................2711.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................TCAATTGTGGGAGCGTG------------GGGTTGCTA.......2611.00100000001000000000
........TTGGA--ACTTTCTCAGCTTACGTCAGGG.........................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
...............................TCAGGAAATTCTAGAAAACAGGTAAA.....................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
.........TGGA--ACTTTCTCAGCTTACGTCAGGAAAT......................................................................................................................................................................................................................................................................................................................................................2911.00100000000100000000
............................................................................................................................................TATTGTAATCGGTATT-GAGC-------......................................................................................................................................................................................................................2011.00100000000010000000
.....................TCAGCTTACGTCAGGAAATTCTAGAAA..............................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
....................................................................................................................................................................................................................................................................................................................TCTGAGTAT------------------CCTCAATTGTGGGAGCGTG------------................2811.00100000000010000000
............................................................................................................................................................................................................................................................................................................................T------------------CCTCAATTGTGGGAGCGTG------------GGGT............2411.00100000001000000000
.......................................TTCTAGAAAACAGGTAAAACACAGATTC...........................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
...................................................................................................................................................ATCGGTATT-GAGC-------TTTGAAGTTCTTT.........................................................................................................................................................................................................2611.00100000000010000000
........TTGGA--ACTTTCTCAGCTTACGTCAGGAAA.......................................................................................................................................................................................................................................................................................................................................................2911.00100000000010000000
.........TGGA--ACTTTCTCAGCTTACGTCAGGA.........................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...................................................................TATATGTCGAT-CTACTTAATTGTAAG................................................................................................................................................................................................................................................................................................2611.00100000000100000000
....................................................................................................................................................................................................................................................................................................................TCTGAGTAT------------------CCTCAATTGTGGGAGCG..............................2611.00100000000001000000
.................TTTCTCAGCTTACGTCAGGA.........................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
...........................TACGTCAGGAAATTCTAGAAAACAGGTA.......................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.................................AGGAAATTCTAGAAAACAGGTAAAACAC.................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
...................................................................................................................................................ATCGGTATT-GAGC-------TTTGAAGTTCTT..........................................................................................................................................................................................................2511.00100000000010000000
................................CAGGAAATTCTAGAAAACAGGTAAAACAC.................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
................................CAGGAAATTCTAGAAAACAGGTAAAACA..................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
........................................TCTAGAAAACAGGTAAAACACAGA..............................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
.......................................................................................................................................................................................................................................................................................................TAAAGTCCCGAAATCTGAGTAT------------------CCTC...........................................2611.00100000001000000000
..........................TTACGTCAGGAAATTCTAGAAAACAGG.........................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
..............................................................................................................................................TTGTAATCGGTATT-GAGC-------TTTGAAG...............................................................................................................................................................................................................2511.00100000000010000000
...........................TACGTCAGGAAATTCTAGAAAACAGGT........................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
..............................................................................................................................................TTGTAATCGGTATT-GAGC-------TTTGAAGT..............................................................................................................................................................................................................2611.00100000000010000000
......................................................................................................TGAACTCAACTCCTAA-TTCTGACTT..............................................................................................................................................................................................................................................................2511.00100000000010000000
...........................TACGTCAGGAAATTCTAGAAAACA...........................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
.........TGGA--ACTTTCTCAGCTTACGTCAGGAA........................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...................TCTCAGCTTACGTCAGGAAATTCTAGAAAA.............................................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
.....................................................TAAAACACAGATTCTATATGTCGA.................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
............................................................................................................................................TATTGTAATCGGTATT-GAGC-------TTTGAAG...............................................................................................................................................................................................................2711.00100000001000000000
................................CAGGAAATTCTAGAAAACAGGCG.......................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
.......................................................AAACACAGATTCTATATGTCGAT-CTACTT.........................................................................................................................................................................................................................................................................................................2911.00100000001000000000
.......................AGCTTACGTCAGGAAATTCTAGAAAAC............................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
...........................................................................................................................................................................................................................................TTTATGTA----------------------------------------------------TAAAGTCCCGAAATCTGAGA...................................................................2811.00100000001000000000
..........................TTACGTCAGGAAATTCTAGAAAACAGGC........................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
....................................................................................................................................................TCGGTATT-GAGC-------TTTGAAGTTCTTTC------------------------------------....................................................................................................................................................................2611.00100000001000000000
..........GGA--ACTTTCTCAGCTTACGT..............................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
........................................................AACACAGATTCTATATGTCGAT-CTACTT.........................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.....................................................................TATGTCGAT-CTACTTAATTGTAAGTATC............................................................................................................................................................................................................................................................................................2811.00100000001000000000
.......................................................................................................................................................................................................................................................................................................TAAAGTCCCGAAATCTGAGTAT------------------CCTCAAT........................................2911.00100000010000000000
.....AGCTTGGA--ACTTTCTCAGC....................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
........................GCTTACGTCAGGAAATTCTAGAAA..............................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
AGGACAGCTTGGA--ACTTTCTCAGC....................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
.......................AGCTTACGTCAGGAAATTCTAGAAA..............................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
................................CAGGAAATTCTAGAAAACAGGTAAAAC...................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
........................GCTTACGTCAGGAAATTCTAGAAAACAGG.........................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
.........TGGA--ACTTTCTCAGCTTACGTCAGGAAATT.....................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
.................................................CAGGTAAAACACAGATTCTATATGTCGAT-...............................................................................................................................................................................................................................................................................................................2911.00100000010000000000
..............................................................................................................................TTCGTCTAAAATTATATTGTAATCGGTA....................................................................................................................................................................................................................................2811.00100000000010000000
.............................................................................................................................................................................AGTTCTTTC------------------------------------TTGTTTTG--CCTTTGGT..................................................................................................................................................2511.00100000000010000000
..........................................................................................................................TGACTTCGTCTAAAATTATATTGTAAT.........................................................................................................................................................................................................................................2711.00100000010000000000
................................................................................................................TCCTAA-TTCTGACTTCGTCTAAAAT....................................................................................................................................................................................................................................................2511.00100000001000000000
....................................................................................................................................................TCGGTATT-GAGC-------TTTGAAGTTCTTT.........................................................................................................................................................................................................2511.00100000000100000000
........TTGGA--ACTTTCTCAGCTTACGTCAGGAA........................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
...........................TACGTCAGGAAATTCTAGAAAACAG..........................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
...........................................................................................................TCAACTCCTAA-TTCTGACT...............................................................................................................................................................................................................................................................1920.50100000000001000000
droSec2
AGGACAGCTTGGA--ACTTTCTCAGCTTACGTCAGGAAATTCTAGAAAACAGGTAAAACAGATTCTATA--TGTCGAT-CTACTTAATTGTAAGTATCAAACTGAACTCAACTCCTAA-TTCTGACTTCGTCTAAAATTATATTGTAATCGGTATT-GAGC-------TTTGAAGTTCTTTC------------------------------------TTGTTTTG--CCTTTGGTTTATGTC----------------------------------------------------TAAAGTCCCGAAATCTGAGTAT------------------CCTCAATTGTGGGAGCGTG------------GGGTTGCTAGCTGTCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................TCAGCTTACGTCAGGAAATTC....................................................................................................................................................................................................................................................................................................................................................2111.0011000
....................................................................................................................................................................................................................................................................................................................................................ATTGTGGGAGCGTG------------GGGTTT..........2011.0011000
.....AGCTTGGA--ACTTTCTCAGCT...................................................................................................................................................................................................................................................................................................................................................................2011.0011000
dm3
AGGACAGCTTGGA--ACTTTCTCAGCTTACGTCAGGAAATTCCAGAAAACAGGTAAAATACAGTGGCTTCATTTTGAT-TTACTTAGTTGTAAGCGTCCAACAGAACTCAACTCCTGAACTTATATTGTA-----------------ATAGGTATT-GAGC-------TTAAGAGTTCTTTC------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................CTTACGTCAGGAAATTCCAGAAAACAG..........................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TACGTCAGGAAATTCCAGAAAACAGGC........................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................ACGTCAGGAAATTCCAGAAAAC............................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................GTAAGCGTCCAACAGAACTC.................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TTACGTCAGGAAATTCCAGAAAACAGGC........................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
................CTTTCTCAGCTTACGTCAGGAAATTCC...................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CTCAGCTTACGTCAGGAAATTCCAGAA...............................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................TCAGCTTACGTCAGGAAATTCCAGAAAA.............................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTGGA--ACTTTCTCAGCTTACGTCAGG..........................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCTCAGCTTACGTCAGGAAATTCCA..................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................AGCTTACGTCAGGAAATTCCAGAAAAC............................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CTCAGCTTACGTCAGGAA........................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
............A--ACTTTCTCAGCTTACGTCAGGA.........................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................TCAGCTTACGTCAGGAAATTCCAGAA...............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GGA--ACTTTCTCAGCTTAC................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TTCTCAGCTTACGTCAGGA.........................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TAGGTATT-GAGC-------TTAAGAGTTCTTTC------------------------------------....................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................CTCAGCTTACGTCAGGAAATTCC...................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................TTACGTCAGGAAATTCCAGAAAACAGG.........................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.....................TCAGCTTACGTCAGGAAATTCCA..................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCAGCTTACGTCAGGAAATTCCAGAAAAC............................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TTCTCAGCTTACGTCAGGAAATTCCAGAA...............................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCAGCTTACGTCAGGAAATTCCAGA................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................TCTCAGCTTACGTCAGGAAATTCCAGAA...............................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CTCAGCTTACGTCAGGAAA.......................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CTTTCTCAGCTTACGTCA............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTTCTCAGCTTACGTCAG...........................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CTTACGTCAGGAAATTCCAGAAAAC............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCAGCTTACGTCAGGAAATTCCAGAAA..............................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AATACAGTGGCTTCATTTTGAT-...............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TGGA--ACTTTCTCAGCTTACGTCAGGA.........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AGCTTACGTCAGGAAATTCCA..................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........TGGA--ACTTTCTCAGCTTACGTCAGGAAA.......................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCTTACGTCAGGAAATTCCAGAAAACAGGC........................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GTTGTAAGCGTCCAACAGAACTCAA...............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AGCTTACGTCAGGAAATT.....................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AGCTTACGTCAGGAAATTCC...................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GTCAGGAAATTCCAGAAAACAGGC........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......GCTTGGA--ACTTTCTCAGCTTACGTCAG...........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TACGTCAGGAAATTCCAGAAAACAGGT........................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CAGGAAATTCCAGAAAACTAC.........................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
droEre2
AAAAAA-------------------------------------------TAAGTAA----------------ATAGATTTTCCTTAGTTTCAAATCTTAGACTAAACTTAACTCCTAA-TTCTAACTTTATCTGCGATTATACC----TCGGCTAT-GGGCTCTGAGCTTTTGAGCT-----------------------------------------------------------------------------------------------------------------------------TTTGAATCGAAGTTT------------------CTTCAAATGTGGGAATGTGTTGATAATGCGACGGTAGCTAGTTGTTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TAGT--------------------------------------------------------------------------------TAATTGTAGTTCTCAAACTGAACTCAACTCCTAA-TTCAGACTTCTTCTACGATTATACC----TAGGTCTT-AAGC-------TT-AGAGCGTT-TA----TGAGTGGCTTTCAA-------AAATTATCTTTTAACTT-------------TGTGACAATTCTTGTTTTGTTCTTATATTGTGAGCTAAGTCCCGAATTCGTTTAT----GCAGCCCCGAAATCTGAGTAT------------------CCTAA------GGAAGGTGCTGATAGTGCGGCGGTCGCTAGCTATTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TA------------------------------------------------------------------------------------TTGATAAATCTCAAACTGAACTCTCTGTCTAA-CTCCTACTTCATTTACGATCATACC----TCGGTTTT-GAGC-------TTTATAGCTTTTTG----TGAGTGGGTTTTCTTACTATTGATTGACTCTCTAACTTTGGACTTTAGACTCGAGAC----------------------------------------------------TTGGGTCGCGAAATCTGAGTAT------------------CCTGAATTGTGGGAACGTG----------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACAATTTTTATAT--TT--------------GAG-------------------AA----------------CACCGAC-TTG-CTATTGACAAATCTCAAACTGAAATCGCTCCCTAA-CTCCTACTTCATTTA--------------------------------------GAGCTTTTTG----TGAGTGGCTTTTGTTGCTATTGAGTGACTCCCTAACTTTGGACGTTAGATTCCAGAC----------------------------------------------------TTGGGTCCCGAAATCTGAGTAT------------------CCTGAATTGTGGGAACGTG----------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CTAACTCTTAATT----------------CAAAAAGCACATTAAAAA-------------------------------------------------------TGCACTTAATT-------------------------------------------------------ATTGAAGATTTTTT------------------------------------GTA--TTCCATTTTAGGTTTTAGCC----------------------------------------------------AAGCTTTTCATAATTTTAATAT------------------TCTCAATT---------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CCTAAT-------------------------------------------------------------------------------TGTTTTAGGTCTCAAACTGAATTCCATCGCCAA-CTCATACTTCTTTTACGATCAAACC----TCAGTTTT-GAGC-------TTTGGAGCTTTTTA---ATGAGTGATTTGAATGTTTATTGAGTGGCTTTCAGA-TTTGTACTTTGGAC-CAAGACAGTTCT------------------------TTGTTCCGATCTTGGTTACGACTTGGGTCCCGAAATCTGAGTAT------------------CCTGAATTGTGAGAACGTG----------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GGAAGAACA----------------------------------------------------------------CCGAT-TCG-ATAGTTACAAGTTTCAAACTGAACTCGCTCCCTAA-CTCGTACTTTATCTACGATCAAACT----TCGGTTCT-GAGC-------TTTGGAGCTTTTTA---ATGAGTGGCTTTAGGGTTTATTGAGTGGCTTTCATA-TTTGTACTTTGT-------------------------------------------TCTCATCTTGTTTATGATTTCGGTCTCGAAATCTGAGTAT------------------CCTGAATCGTGGGAATG------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ACAAATATTCTTTATTT--G----------GAAG-------------------AA----------------CACCGAC-CTG-TCACTTGCAAGTCTCAAACTGAACTCAACTCCTAA-CTCTGACTTCCTTTACTATCATACC----TCGGTTGTGGAGC-------TTTCGAGCTTTACTTGAAT--GTGTTTATTGTTTAGGCTAAGA-ACTTTCCCGA-TTGGACTTTGGATTCT----------------------------------TGGATTTGAATTTGTTTATGGCCTTGGTCCCGAAATTTGAGTTTACGACTTTGGTTTGGGAATCTGAATTATGGGAACGTG----------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATAATAATTTGGC--CCTTTCTCAGTTAACAGCAGGAAACTCTAGGAAGCAGGTAAATCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
AGGATAATATGAC--TTTGTCGCAGCTAACATTAGGAAACTCAAGAAAGCAGGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CAACCTAC----------------------------------------------------------------------------TACTTGTAGATATCAAACTGAACTCAACTCCTAA-CTCTGACTTCTTTTACGATCATACC----TCGGTTGTGGAGC-------TTTCGAGCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AAGAGAACTTGGC--GCTGTCTCATCTAACTATAGGCAACTCAAGGAAGCAGGTAAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........TGGC--GCTGTCTCATCTAACTATAGGCAA.......................................................................................................................................................................................................................................................................................................................................................2813.0030000000030
droPer2
AAGAGAACCTGGC--GCTGTCTCATCTAACTGTAGGGAACTCAAGGAAGCAGGTAAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................CATCTAACTGTAGGGAACT.....................................................................................................................................................................................................................................................................................................................................................1912.002200000
droWil2
AAATAT-----------------------------------------------------------------------------------------TCTACTGTAAAGTCGTCTTCTAA-TTCTAGCCGCATGCGTGTTAGTTTTGAACTCGGGTTC-GCAC-------TGTGAAGTGTTTTT------------------------------------CATATATA--TATATAGTCTGTATA----------------------------------------------------TATAGTC--------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................TGTTAGTTTTGAACTCGGGTTC-GTGG-------......................................................................................................................................................................................................................2613.00330000
..................................................................................................................................TGCGTGTTAGTTTTGAACTCGGGT....................................................................................................................................................................................................................................24110.82909000
..........................................................................................................................TAGCCGCATGCGTGTTAGTTTTGAACT.........................................................................................................................................................................................................................................27110.55606000
..............................................................................................................................CGCATGCGTGTTAGTTTTGAACTCGGG.....................................................................................................................................................................................................................................27110.55630030
..............................................................................................................................CGCATGCGTGTTAGTTTTGAACTCGGGT....................................................................................................................................................................................................................................28110.45504100
..............................................................................................................................CGCATGCGTGTTAGTTTTGAACTCG.......................................................................................................................................................................................................................................25110.45500050
..............................................................................................................................CGCATGCGTGTTAGTTTTGAACTCGG......................................................................................................................................................................................................................................26110.45502030
....................................................................................................................................CGTGTTAGTTTTGAACTCGGG.....................................................................................................................................................................................................................................21110.27303000
........................................................................................................................................................GTTC-GCAC-------TGTGAAGTGTTTT.........................................................................................................................................................................................................2140.25100100
..................................................................................................................................TGCGTGTTAGTTTTGAACTCG.......................................................................................................................................................................................................................................21110.18201001
..............................................................................................................TCTTCTAA-TTCTAGCCGCATGCGTGT.....................................................................................................................................................................................................................................................2660.17101000
....................................................................................................................AA-TTCTAGCCGCATGCGTGTT....................................................................................................................................................................................................................................................21120.17202000
........................................................................................................................TCTAGCCGCATGCGTGTTAGTTTTGAAC..........................................................................................................................................................................................................................................28110.09101000
.......................................................................................................................TTCTAGCCGCATGCGTGTTAG..................................................................................................................................................................................................................................................21110.09101000
..........................................................................................................................TAGCCGCATGCGTGTTAGTTTTGAAC..........................................................................................................................................................................................................................................26110.09101000
.........................................................................................................................CTAGCCGCATGCGTGTTAGTT................................................................................................................................................................................................................................................21110.09101000
...............................................................................................................................GCATGCGTGTTAGTTTTGAACTCGGGT....................................................................................................................................................................................................................................27110.09101000
..................................................................................................................................TGCGTGTTAGTTTTGAACTCGGG.....................................................................................................................................................................................................................................23110.09101000
...................................................................................................................................GCGTGTTAGTTTTGAACTCG.......................................................................................................................................................................................................................................20110.09101000
............................................................................................................................GCCGCATGCGTGTTAGTTT...............................................................................................................................................................................................................................................19110.09100100
........................................................................................................................TCTAGCCGCATGCGTGTTAGTTTTGAACT.........................................................................................................................................................................................................................................29110.09101000
....................................................................................................................AA-TTCTAGCCGCATGCGTGT.....................................................................................................................................................................................................................................................20200.05101000
.....................................................................................................................A-TTCTAGCCGCATGCGTGT.....................................................................................................................................................................................................................................................19200.05101000
droVir3
ACGATCATCTAAC--GCTTTCGCAACTAACAGTTCGAAATTCAAGAAAACAGGCCGCGCAAAAGTTCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................TCAAGAAAACAGGCCGCGCAAAAGTTC...........................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000100000000000000000000000000000000000000
droMoj3
AAGATCACCTGAC--CCTATCGCAGCTGACGGTGCGAAACACGAGAAAACAGGCGGCTCAGAAGTTCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGTTGCTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATGATCACTTGAC--CCTCTCCCAGTTAACCGTGCGCAACTCGAGGAAACAAGCTGCACAGAAATTCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................CAGTTAACCGTGCGCAACTCG...................................................................................................................................................................................................................................................................................................................................................2111.00101

Generated: 05/18/2015 at 11:17 AM