ID:

dsi_11146

 Coordinate:

2r:17125571-17125720 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.7 -13.6 -13.5

Flybase annnotation

CDS [2r_17125746_17127044_-]; three_prime_UTR [2r_17125721_17125745_-]; exon [2r_17125721_17127044_-]; intron [2r_17125389_17125720_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGTGGCCATCACGGCCTCCAACTAAAATCCAGTTCTGGTGGATCCGTAAAGTAAATACCTTATATTGGGATGCTTCTGCCATTTGCTTTGTAGATAACTTAGTTAACGAGGGCTAAGCCTTCGTGTAGATTGTTGATTAATTTTATGAATTGCGTACACTTGCTTGTATTTTAAATGAATTTTATGCATAACATCGAAATGAAATTCGAATACAAAATAATATTGATAGAAATTGAGCCTTTTCTAGCTA
**************************************************************************************((((((((((((.......((((((((...)))))))).......))))......)))))))).**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 SRR902008
ovaries
 M025
embryo
 SRR902009
testis
......................................................................................TTTGTAGATAACTTAGTTAACGAGGGC......................................................................................................................................... 27 0 1 18.00 18 14 2 1 1 0 0 0 0 0 0
.......................................................................................TTGTAGATAACTTAGTTAACGAGGGC......................................................................................................................................... 26 0 1 8.00 8 5 3 0 0 0 0 0 0 0 0
...........................................................................................................................TGTAGATTGTTGATTAATTTTATGAAT.................................................................................................... 27 0 1 5.00 5 0 2 2 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATATTGATAGAAATTGAGCCT.......... 21 0 1 4.00 4 0 2 0 0 1 1 0 0 0 0
.........................................................................................................................................................................................................................TAATATTGATAGAAATTGAGCCTTT........ 25 0 1 3.00 3 2 0 0 0 0 0 0 1 0 0
........................................................................................TGTAGATAACTTAGTTAACGAGGGC......................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.........................................................................................................................CGTGTAGATTGTTGATTAATTTTA......................................................................................................... 24 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TACAAAATAATATTGATAGAAATTGAGCC........... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAGATTGTTGATTAATTTTATGAAT.................................................................................................... 25 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0
.........................................................................TTCTGCCATTTGCTTTGTAGATAACGAG..................................................................................................................................................... 28 3 1 2.00 2 0 0 2 0 0 0 0 0 0 0
......................TAAAATCCAGTTCTGGTGGATCCGTA.......................................................................................................................................................................................................... 26 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0
...................................................................................TGCTTTGTAGATAACTTAGTTAACGAG............................................................................................................................................ 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..........................ATCCAGTTCTGGTGGATCCGTAAAGTA..................................................................................................................................................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
................TCCAACTAAAATCCAGTTCTGGTGGA................................................................................................................................................................................................................ 26 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0
......CATCACGGCCTCCAACTAAAATC............................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................AATGAATTTTATGCATAACATCGAA.................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................TTATGAATTGCGTACACTTGCTTGTATT................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................CTTTGTAGATAACTTAGTTAACGA............................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................GTAGATTGTTGATTAATTTT.......................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TGAAATTCGAATACAAAATAATATTGA........................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAATAATATTGATAGAAATTGAGCC........... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................AACGTAGTTAACGAGGGCT........................................................................................................................................ 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................TATATTGGGATGCTTCTGCCATT....................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................GCTAAGCCTTCGTGTAGATTGT..................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................GCCATTTGCTTTGTAGATAACGA...................................................................................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................TGCCATTTGCTTTGTAGATAAC........................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................TTATGAATTGCGTACACTTGCTTGTA.................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................TTAGTTAACGAGGGCTAAGCCTTCGTG............................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................TAAGCCTTCGTGTAGATTGTTGATTAATT............................................................................................................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AATATTGATAGAAATTGAGCCTT......... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................TTGATAGAAATTGAGCC........... 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................................TATACTGGGATGCTTCTGCC.......................................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................TTAGTTAACGAGGGCTAAGCCTT................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...............................................................................................................GCTAAGCCTTCGTGTAGATTG...................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................TTTTAAATGAATTTTATGCATAACATCGA..................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................................................GGGGATGCTTCTGCCATTTGCTTTGTAGA............................................................................................................................................................ 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTATGCATAACATCGAAATG................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................GTAGATAACTTAGTTAACGAGG........................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TGGAGATAACTTAGTTAACGAGGGC......................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TATAAATTGCGTACACTTGCTTGTATT................................................................................ 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................TTCTGCCATTTGCTTTGCAGA............................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TACAAAATAATATTGATAGAAATTGAGC............ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TAATATTGATAGAAATTGAGCCTT......... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTATGCATAACATCGAAATGAAATT............................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAAATAATATTGATAGAAATTGAGC............ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGATAGAAATTGAGC............ 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................TATACTGGGATGCTTCTGCCA......................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................TTGGGATGCTTCTGCCATT....................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................AGTAGATTGTTGATTAATGTTCT........................................................................................................ 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................TTTAGATAACTTAGTTAACGAGGGC......................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................GCTTTGTAGATAACTT...................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................GTAGATAACTTAGTTAACGA............................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................................................................CCATTTGCTTTGTAGATAACT....................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................TTTTATGAATTGCGTACACTTGC....................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................CTAAGCCTTCATGTAGATT....................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................CCAGTTCTGGTGGATCCG............................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................TTTATGAATTGCGTACACTTGCTTGTA.................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................TAATATTGATAGAAATTGAGCCTTTTC...... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................GCTAAGCCTTCGTGTAGATTGTTGA.................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................GTAGATAACTTAGTTAACGAG............................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................TGCATAACATCGAAATGA................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................TGCCATTTGCTTTGTAGATA.......................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................TAAGCCTTCGTGTAGATTGTTGATTA............................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................GTAGATAACTTAGTTAACGAGGGCTA....................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTATGCATAACATCGAAATGAAA.............................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................TGTTGATTAATTTTATGAATTGCGTA.............................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAAATAATATTGATAGAAATTGAGCCTTT........ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................TGCTTTGTAGATAACTTAGTTAACGAGGGC......................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................TGGGCCTTCGTGTAGATTGTTGATTAAT............................................................................................................. 28 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................TTTGCTTTGTAGATA.......................................................................................................................................................... 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................GTAGATTGTTGATTAAT............................................................................................................. 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................TCGTGTAGATTGTTGATTAATTTTA......................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................TTCGTGTAGATTGTTGATTAAT............................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................TATATTGATAGAAATTGAGCCTTTT....... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................TGTAGATAACGAGGGCTAAGC.................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................TATGAAGTGAGTACACTT......................................................................................... 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................TTGATCGAAATTGGGCCTTC........ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1
...............................ATTCTGGTTGATCCGTAAC........................................................................................................................................................................................................ 19 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0
...............................ATTCTGGTTGATCCGTAAG........................................................................................................................................................................................................ 19 3 18 0.06 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................CTACGTGTAGATAGCTGA.................................................................................................................. 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CCACCGGTAGTGCCGGAGGTTGATTTTAGGTCAAGACCACCTAGGCATTTCATTTATGGAATATAACCCTACGAAGACGGTAAACGAAACATCTATTGAATCAATTGCTCCCGATTCGGAAGCACATCTAACAACTAATTAAAATACTTAACGCATGTGAACGAACATAAAATTTACTTAAAATACGTATTGTAGCTTTACTTTAAGCTTATGTTTTATTATAACTATCTTTAACTCGGAAAAGATCGAT
****************************************************************************************************((((((((((((.......((((((((...)))))))).......))))......)))))))).************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M023
head
......GTAGTGCCGGAGGTTGATTTT............................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.........GTGCCGGAGGTTGATTTTAGG............................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
CCACCGGTAGTGCCGGAGGTT..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
....................................................................................................................CGGAAGCACATCTAACAACTA................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
............ACGGAGGTTGATTTTAGGTCAA........................................................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
.........................................AAGGCATTTCATTATTGGAAT............................................................................................................................................................................................ 21 3 4 0.25 1 0 0 1 0 0
..ACAGGTATTGCCGGAGG....................................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 1 0 0
...........................CTGTCAAGACCACGTAGGCA........................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 1 0
....GGTTAGTGCCGCAGGTTGA................................................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:17125521-17125770 - dsi_11146 GGTGGCCATCACGGCCTCCAACTAAAAT-------------CCAGTTCT----G--GTGGATCCGTAAAGTAAATACCTTATAT----TGG-----------------GATGCTTCTGCCAT-TTGCTTTG---TAG-------------AT-AACTTAG---TTAACG-----AGGGCT------AAGC-----------------CTTCG-------TG---------------TAGAT---TGTTGATTAATTTTATGAATTGCGTACACTTGCT-TGTATT--TTAAATGAATTTTATGC----ATAAC--ATCGAAATGA-AATTCGAATACAAAATAAT------------------AT-----TGA---TAGAAAT---TGAGCCT-----------TTTCTAGCTA
droSec2 scaffold_1:14109764-14110013 - GGTGGCCATCACGGCCTCCAACTAAAAT-------------CCAGTTCT----G--GTGGATCCGTAAAGTAAATACCTTATAT----TGG-----------------GATGCTTCTGCCAT-TTGCTTTG---TAG-------------AT-AACTTAG---TTAACG-----AGGGCT------AAGC-----------------CTTCG-------TG---------------TAGAT---TGTTGATTAATTTTATGAATTGCGTACACATGCT-TGTATT--TTTAATGAATTTTATGC----ATAAC--ATCGAAATTA-AATTCGAATACAAAATAAT------------------AT-----TGG---TAGAAAT---TGAGCCT-----------TTTCTAGCTA
dm3 chr2R:16555905-16556129 - GGTGGCCATCACGGCCTCCAACTAAAAT-------------CCAGTTCT----G--GTGGATCCGTAAAGTAAATATCTTATAT----TGA-----------------GATACTTCTGCCAT-TTGCTTTG---TAG-------------AT-AACGTAG---TTAACG-----AGGGGT------AAGC-----------------CTTCA-------TG---------------TAGAT---TGTTGATTAATTTTATGAATTGCGTACACTTGCT-TGTATT--TTTAATGAATTTTATGC----ATCAA--AT--------------------------AT------------------AT-----TGA---TAAAAAT---GTAGCCT-----------TTTTTAGCTA
droEre2 scaffold_4845:10703975-10704172 - GGTGGCCATCACGGCCTCCAACTAAAAT-------------CCAGCTCT----G--GTGGATCCGTAAAGTAAATACCTGGTA------GA-----------------GAAGCCTCTGCTAT-TTGCTTTG---TAG-------------TT-A-----------AACG-----AGGGCC------AAGC-----------------TCTCA-------TG---------------TAGAT---TGTTGATTAATTTTATGAATTGCATACACTTGCT-TGTATT--TTTAATGAATTTTTTACATACATATA--ATCAAAATGAAG---------------------------------------------------------------------------------------
droYak3 2R:12639610-12639816 + GGTGGCCATCACGGCCTCCAACTAAAAT-------------CCAGCTCT----G--GTGGATCCGTAAAGTAAATACCTTATA------GA-----------------GAAGCCTCTGCTAT-TTGCTTTG---TAG-------------AT-AAAGTAG---TTAACG-----AGGACT------AAGC-----------------TCTCG-------TG---------------TAGAT---TGTTGATTAATTTTATGAATTACATACACTTGCT-TGTATT--TTTAATGAATTTTTTAC----GTATT--ATCAAAATGA-ATATCGA---------------------------------------------------------------------------------
droEug1 scf7180000409474:1403460-1403701 + AGTGGCCATCACGGCCTCCAATTAAACT-------------C---TTCT----G--GTGTCTCCGTAAAGTAAATATCTCATA------GA-----------------GAATCCTATGTTATTTTGCTTTG---TAG-------------AT-CAAGTAT---TTAACG-----AGGGTT------CGTC-----------------CCTCG-------AG---------------TAGAT---TGTTGATTATTTTTATGGAT-ACATAC----GCT-TGTATT--TTTATTGAATTTT-TAT----ATAAA--ATCGAA-TGGAAAATAGAATCCATAATCTT-------------------T-----TGC--TTAAAAAA---ATAGTCT---------GCTTACAAGGTA
droBia1 scf7180000301754:985678-985929 + GGTTGCCATCGCCGCCTCCAACTGAAAA-------------CCTCTTCC----G--GCGGCCCCGTAAAGTAAATAACTCATT------CA-----------------GATACCTCTGCTATATTGCCTTA---TAG-------------AT-CAAGTAG---TTAACG-----AGGGTT------CATC-----------------TCTCG-------AG---------------TAGAT---TGTTGATTATTTTTATGAATTACTTACGCTTGCT-TGTATT--TTTATTGAATTTT-TA------TAAA--ATCGAAATGGAAAATCGAAA------CTATTTGCTTGAATAAC-----A-------AT--TT-GAAGG---TGAAGAT-----------ATTTAAGACG
droTak1 scf7180000414560:251167-251398 + GGTGGCCATTACCGCCTCCAACTAGAGGAAAACCACAGCCTCCTCATCT----G--GTGGCTCCGTAAAGTAAATA--TTATAG---CACA-----------------GAAACCTCTGCTAT-TTGCCTTG---TAG-------------ATTCAAGTAG---TTAACG-----AGGGTT-----ACGCC-----------------TCTCG-------CT---------------TAGAT---TGTTGATTAATTTTATGGATTACCTACGCTCGCT-TGTATT--TTTATTGAATTTT-TAT----ATAAA--ATCGAAATGGAAAATCGACTGCCACAT------------------------------------------------------------------------
droEle1 scf7180000491240:528028-528242 + AGTGGCCATTGCTGCCTCCAACTAATAC-------------CTC-TTTC----G--GTGGATCCGTAAAGTAAATACCTTATA------GA-----------------GAAGCCTCGGCTAT-TTGCTTTG---TAG-------------AT-CAAGTAG---TTG-CG-----AGTGTT------TATC-----------------CCTCG-------AG---------------TAGAT---TGTTGATTATTTTTATGGATTACTTACACTTGCT-TGTATT---TTATTGAATTTT-TAC----ATAAA--ACCGAAATAGAAATTCGAATGCGAAACAA----------------------------------------------------------------------
droRho1 scf7180000780104:179654-179861 - AGTGGCCATTGCGGCCTCTAACTAATAA--------------------T----G--GTGGATCTGTAAAGTAAATACCTTTTA------AA-----------------GAAGCCTTGGCTAT-TTGCTTTT---TAG-------------AT-AAAATAG---TAGACG-----AGTGTT------CATC-----------------TCTCG-------TG---------------TAGAT---TGTTGATTAATTTTATGGATTGCTTTC----GCT-TGTATG--TTTATTGAATTTTTTAT----ATACC--ATCGATATGGAAAATCGAATGCCAATCAA----------------------------------------------------------------------
droFic1 scf7180000454039:1864989-1865251 - GATAGCCATCGCAGCCTCCAACTAAAC------------------TTCT----G--GTGGAACCGAAAAGTAAATACCTTATT------GA-----------------GATACCTCGGCTAT-TTGTTATG---TAG-------------AC-CAAGTAG---TTAACG-----AGGGCT------TGTC-----------------TCTCG-------GG---------------TAGTT---TGTTAATTAATTTTATGAATTTCTTACGCTTGCT-TGTATT--TTTATTGAATTTT-TAT----ATAAA--AACGCAATGGAAAATTGAATACCAACCAAA------------------ATTTAAATGGTATAGGAAATCACATATCCTTTTTAC--TAATTGTAAACTA
droKik1 scf7180000302471:1030542-1030796 - GGTGGCCATTGCGGCTTCAAATTAAACA-------------CC--TTTC----G--GTGGCTCTGTAAAGTAAATACCTA--A------GA-----------------TAATCCTTCGCCAG-TTGCTTTG---TAG-------------AT-CAAGTAG---TTGCCG-----AGGGTG-----TAATC-----------------ACTCG-------GG---------------TAGAT---TGTTGATTAATTTTATGAATTA----CGCTTGCT-TGTAT-----TATTGAATTGTTTAC----ATCAG--ATCGAAATGAATATTCGATTT------TTTCAGCTTAAAACACCCATTATTTT--AGT--TTGGAAAC---ATAGTAC-----------ATTAAGACTG
droAna3 scaffold_13266:4026472-4026708 + GGTGGCCATTGCGGCCTCCAACTAAAGC-------------ATC-GTTT----C--GTGTCTCCGCA-AGTAATTGACTTCTTTCTTCAGA-----------------GATGCATAGATTAG-TTGCTTTA--GCAT-------------AT-CCTGTAG---TTTCCA-----AGGGCT------TTTC-----------------CCTTG-------GC---------------TAGAT---TGTTGATTAATTTTATGAATTGCTTAAGCTTGCT-TGTAT-----TATTGAATTTT-TAT----AAAAAA-AAAAAATTTGAAAATCTA-----CA-C-------------------TCGTT---------------------------TTTCACAC--AATTTCAATTA
droBip1 scf7180000396427:2490305-2490540 + GGTGGCCATTGCGGCCTCCAACTAAAGC-------------ATC-GTTT----C--GTGTCTCCGCA-AGTAATTGACTTATTTCTTCAGA-----------------GATGCATATATTAG-TTGCTTTTA-CTATAAC----------GC-TTAGTAG---TTTTTA-----AGGGTT------T-TC-----------------CCTTG------CCT---------------TAGAT---TGTTGATTAATTTTATGAATTGCTTAAGCTTGCT-TGTAT-----TATTGAATTTT-TAT----AAAAAACAT------TGAAAAACCA-----CAAC-------------------TTGTT---------------------------TT--ACACTA-TTTATGACTG
dp5 3:8592719-8592959 + AGTGGCTATTGCTGCCACCAACTAAAGC-------------TCC--CA-GGAGAGGGGTACAGTGCA-AGTAATTAAGTTTTAATTTTTGTTTTTTT-----TTTGCTTAACTTTGC--------------GCTAGTAGTGCTTTGGTAGA-----ATATTATTATATAGTGCATTAGCAAAGCTA--TCCCAAGTCGAGATTACCTACTCGGGTACGTTT---------------TAGAT---TGTTGATTAATTTTATGAATTGCCCAT----GCT-TGTATTATACCATTGGATTTG-TAC----ATAA------------------------------------------------------------------------------------------------------
droPer2 scaffold_4:2477219-2477461 + AGTGGCTATTGCTGCCACCAACTAAAGC-------------TCC--CA-GGAGAGGGGTACAGTGCA-AGTAATTAAGTTTTTATTTTTGTTTTTTT---TTTTTGCTTAACTTTGC--------------GCTAGTAGTGCTTTGGTAGA-----ATATTATTATATAGTGCATTAGCAAAGCTA--TCCCAAGTCGAGATTACCTACTCGGGTACGTTT---------------TAGAT---TGTTGATTAATTTTATGAATTGCCCAT----GCT-TGTATTATACCATTGGATTTG-TAC----ATAA------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004513:4548895-4548948 - AGTGCCCATTGCGGCCTCGAACTGAGAG-------------CTGG-GA-CAATCCTGGCACTCTGTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12823:2212698-2212721 + -GTGCCCATTGCGGCCACCAACTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:1561555-1561580 + -GTACCCATTGCGGCCATCAACTAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:15866067-15866345 - GATACCCATTGCGGCCACCAACTAGAGG-------------GGGGAGCTGGAAG--GTGGCGCAGTCAAGTAAATGAATTTTGCCATTTGATATTTGCTTTTTAAACTTGCATTTTA--------------ACCCCAACCGCTTA-GTAGAA-AAAGTAG---TATATATAT------AA------TAT---------ATATAGCTTAACTTGGCGCTTTCTAGAATGAATTTGTATGAATTTATGTTGCTTACTTTTATTAATTGCAAATCTTTGCTTTGTATTATTTTATTGAATTTTTTAT----AAAAA---CAAACATTGAGA--------------------------------------------------------------TCA-----------TGCTTGATTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGTGGCCATCACGGCCTCCAACTAAAAT-------------CCAGTTCT----G--GTGGATCCGTAAAGTAAATACCTTATAT----TGG-----------------GATGCTTCTGCCAT-TTGCTTTG---TAG-------------AT-AACTTAG---TTAACG-----AGGGCT------AAGC-----------------CTTCG-------TG---------------TAGAT---TGTTGATTAATTTTATGAATTGCGTACACTTGCT-TGTATT--TTAAATGAATTTTATGC----ATAAC--ATCGAAATGA-AATTCGAATACAAAATAAT------------------AT-----TGA---TAGAAAT---TGAGCCT-----------TTTCTAGCTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................TTTG---TAG-------------AT-AACTTAG---TTAACG-----AGGGC...........................................................................................................................................................................................................................................27118.0018000000114120000000
................................................................................................................................TTG---TAG-------------AT-AACTTAG---TTAACG-----AGGGC...........................................................................................................................................................................................................................................2618.00800000005030000000
...........................................................................................................................................................................................................................TG---------------TAGAT---TGTTGATTAATTTTATGAAT......................................................................................................................................................2715.00500000010220000000
.......................................................................................................................................................................................................................................................................................................................................................AT------------------AT-----TGA---TAGAAAT---TGAGCCT-----------..........2114.00401000000021000000
.....................................................................................................................................................................................................................................................................................................................................................TAAT------------------AT-----TGA---TAGAAAT---TGAGCCT-----------TT........2513.00300000002000010000
.................................................................................................................................TG---TAG-------------AT-AACTTAG---TTAACG-----AGGGC...........................................................................................................................................................................................................................................2513.00300000003000000000
..................................................................................................................................................................................................................CG-------TG---------------TAGAT---TGTTGATTAATTTTA...........................................................................................................................................................2413.00300000001200000000
..............................................................................................................................................................................................................................................................................................................................................TACAAAATAAT------------------AT-----TGA---TAGAAAT---TGAGCC......................2912.00200000002000000000
............................................................................................................................................................................................................................................TAGAT---TGTTGATTAATTTTATGAAT......................................................................................................................................................2512.00200000010100000000
.................................................................................................................TTCTGCCAT-TTGCTTTG---TAG-------------AT-AACGAG...............................................................................................................................................................................................................................................................2812.00200000000200000000
......................TAAAAT-------------CCAGTTCT----G--GTGGATCCGTA...........................................................................................................................................................................................................................................................................................................................................................2612.00200000010001000000
............................................................................................................................TGCTTTG---TAG-------------AT-AACTTAG---TTAACG-----AG..............................................................................................................................................................................................................................................2712.00200000000020000000
..........................AT-------------CCAGTTCT----G--GTGGATCCGTAAAGTA......................................................................................................................................................................................................................................................................................................................................................2712.00200000000200000000
................TCCAACTAAAAT-------------CCAGTTCT----G--GTGGA.................................................................................................................................................................................................................................................................................................................................................................2612.00200000011000000000
......CATCACGGCCTCCAACTAAAAT-------------C....................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
..................................................................................................................................................................................................................................................................................................AATGAATTTTATGC----ATAAC--ATCGAA.............................................................................................2511.00100000010000000000
................................................................................................................................................................................................................................................................TTATGAATTGCGTACACTTGCT-TGTATT--...............................................................................................................................2811.00100000000010000000
..............................................................................................................................CTTTG---TAG-------------AT-AACTTAG---TTAACG-----A...............................................................................................................................................................................................................................................2411.00101000000000000000
............................................................................................................................................................................................................................G---------------TAGAT---TGTTGATTAATTTT............................................................................................................................................................2011.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................TGA-AATTCGAATACAAAATAAT------------------AT-----TGA---......................................2711.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................AAATAAT------------------AT-----TGA---TAGAAAT---TGAGCC......................2511.00100000000001000000
...............................................................................TATAT----TGG-----------------GATGCTTCTGCCAT-T..................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.................................................................................................................................................................................GCT------AAGC-----------------CTTCG-------TG---------------TAGAT---TGT.......................................................................................................................................................................2211.00100000000001000000
.....................................................................................................................GCCAT-TTGCTTTG---TAG-------------AT-AACGA................................................................................................................................................................................................................................................................2311.00100000010000000000
....................................................................................................................TGCCAT-TTGCTTTG---TAG-------------AT-AAC..................................................................................................................................................................................................................................................................2211.00100000010000000000
................................................................................................................................................................................................................................................................TTATGAATTGCGTACACTTGCT-TGTA...................................................................................................................................2611.00100000000001000000
............................................................................................................................................................TTAG---TTAACG-----AGGGCT------AAGC-----------------CTTCG-------TG---------------..................................................................................................................................................................................2711.00100000000001000000
...................................................................................................................................................................................T------AAGC-----------------CTTCG-------TG---------------TAGAT---TGTTGATTAATT..............................................................................................................................................................2911.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................AAT------------------AT-----TGA---TAGAAAT---TGAGCCT-----------T.........2311.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................T-----TGA---TAGAAAT---TGAGCC......................1711.00100000000001000000
............................................................................................................................................................TTAG---TTAACG-----AGGGCT------AAGC-----------------CTT............................................................................................................................................................................................................2311.00100010000000000000
.................................................................................................................................................................................GCT------AAGC-----------------CTTCG-------TG---------------TAGAT---TG........................................................................................................................................................................2111.00100000000001000000
...........................................................................................................................................................................................................................................................................................TT--TTAAATGAATTTTATGC----ATAAC--ATCGA..............................................................................................2911.00100010000000000000
.........................................................................................................................................................................................................................................................................................................TTTATGC----ATAAC--ATCGAAATG..........................................................................................2111.00100000001000000000
..................................................................................................................................G---TAG-------------AT-AACTTAG---TTAACG-----AGG.............................................................................................................................................................................................................................................2211.00100000000010000000
..............................................................................................................................................................................................................................................................................................................................................TACAAAATAAT------------------AT-----TGA---TAGAAAT---TGAGC.......................2811.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................TAAT------------------AT-----TGA---TAGAAAT---TGAGCCT-----------T.........2411.00100000000010000000
.........................................................................................................................................................................................................................................................................................................TTTATGC----ATAAC--ATCGAAATGA-AATT....................................................................................2611.00100000000100000000
.................................................................................................................................................................................................................................................................................................................................................AAAATAAT------------------AT-----TGA---TAGAAAT---TGAGC.......................2511.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................TGA---TAGAAAT---TGAGC.......................1511.00100000010000000000
...................................................................................T----TGG-----------------GATGCTTCTGCCAT-T..................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.............................................................................................................................GCTTTG---TAG-------------AT-AACTT................................................................................................................................................................................................................................................................1611.00100000001000000000
..................................................................................................................................G---TAG-------------AT-AACTTAG---TTAACG-----A...............................................................................................................................................................................................................................................2011.00101000000000000000
......................................................................................................................CCAT-TTGCTTTG---TAG-------------AT-AACT.................................................................................................................................................................................................................................................................2111.00100000000010000000
..............................................................................................................................................................................................................................................................TTTTATGAATTGCGTACACTTGC.........................................................................................................................................2311.00100000001000000000
.........................................CCAGTTCT----G--GTGGATCCG.............................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
...............................................................................................................................................................................................................................................................TTTATGAATTGCGTACACTTGCT-TGTA...................................................................................................................................2711.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................TAAT------------------AT-----TGA---TAGAAAT---TGAGCCT-----------TTTC......2711.00100000001000000000
.................................................................................................................................................................................GCT------AAGC-----------------CTTCG-------TG---------------TAGAT---TGTTGA....................................................................................................................................................................2511.00100000000001000000
..................................................................................................................................G---TAG-------------AT-AACTTAG---TTAACG-----AG..............................................................................................................................................................................................................................................2111.00100100000000000000
.............................................................................................................................................................................................................................................................................................................TGC----ATAAC--ATCGAAATGA-........................................................................................1811.00100000001000000000
....................................................................................................................TGCCAT-TTGCTTTG---TAG-------------AT-A....................................................................................................................................................................................................................................................................2011.00100000001000000000
...................................................................................................................................................................................T------AAGC-----------------CTTCG-------TG---------------TAGAT---TGTTGATTA.................................................................................................................................................................2611.00100000000010000000
..................................................................................................................................G---TAG-------------AT-AACTTAG---TTAACG-----AGGGCT------A...................................................................................................................................................................................................................................2611.00100000000010000000
..........................................................................................................................................................................................................................................................................................................TTATGC----ATAAC--ATCGAAATGA-AA......................................................................................2311.00100000001000000000
....................................................................................................................................................................................................................................................TGTTGATTAATTTTATGAATTGCGTA................................................................................................................................................2611.00100000000100000000
.................................................................................................................................................................................................................................................................................................................................................AAAATAAT------------------AT-----TGA---TAGAAAT---TGAGCCT-----------TT........2911.00100000001000000000
............................................................................................................................TGCTTTG---TAG-------------AT-AACTTAG---TTAACG-----AGGGC...........................................................................................................................................................................................................................................3011.00100000001000000000
.........................................................................................................................T-TTGCTTTG---TAG-------------AT-A....................................................................................................................................................................................................................................................................1511.00100000010000000000
............................................................................................................................................................................................................................G---------------TAGAT---TGTTGATTAAT...............................................................................................................................................................1711.00100000010000000000
.................................................................................................................................................................................................................TCG-------TG---------------TAGAT---TGTTGATTAATTTTA...........................................................................................................................................................2511.00100000000100000000
................................................................................................................................................................................................................TTCG-------TG---------------TAGAT---TGTTGATTAAT...............................................................................................................................................................2211.00100000000000010000
droSec2
GGTGGCCATCACGGCCTCCAACTAAAAT-------------CCAGTTCT----G--GTGGATCCGTAAAGTAAATACCTTATAT----TGG-----------------GATGCTTCTGCCAT-TTGCTTTG---TAG-------------AT-AACTTAG---TTAACG-----AGGGCT------AAGC-----------------CTTCG-------TG---------------TAGAT---TGTTGATTAATTTTATGAATTGCGTACACATGCT-TGTATT--TTTAATGAATTTTATGC----ATAAC--ATCGAAATTA-AATTCGAATACAAAATAAT------------------AT-----TGG---TAGAAAT---TGAGCCT-----------TTTCTAGCTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................GCT------AAGC-----------------CTTCG-------TG---------------TAGAT---TG........................................................................................................................................................................2120.5011000
........................................................................................................................................G-------------AT-AACTTAG---TTAACG-----AGGGCT------AA..................................................................................................................................................................................................................................2420.5010010
.................................................................................TAT----TGG-----------------GATGCTTCTGCC......................................................................................................................................................................................................................................................................................................1820.5011000
...............................................................................................................................................................................GGGCT------AAGC-----------------CTTCG-------TG---------------TAGAT---..........................................................................................................................................................................2120.5010010
...............................................................................................................................................................................GGGCT------AAGC-----------------CTTCG-------TG---------------TAGAT---T.........................................................................................................................................................................2220.5010010
........................................................................................................................................................................................................................................................GATTAATTTTATGAATTGCGT.................................................................................................................................................2120.5010010
.................................................................................................................................................................................GCT------AAGC-----------------CTTCG-------TG---------------TAGAT---TGT.......................................................................................................................................................................2220.5010100
dm3
GGTGGCCATCACGGCCTCCAACTAAAAT-------------CCAGTTCT----G--GTGGATCCGTAAAGTAAATATCTTATAT----TGA-----------------GATACTTCTGCCAT-TTGCTTTG---TAG-------------AT-AACGTAG---TTAACG-----AGGGGT------AAGC-----------------CTTCA-------TG---------------TAGAT---TGTTGATTAATTTTATGAATTGCGTACACTTGCT-TGTATT--TTTAATGAATTTTATGC----ATCAA--AT--------------------------AT------------------AT-----TGA---TAAAAAT---GTAGCCT-----------TTTTTAGCTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................AGTTCT----G--GTGGATCCGTAAAGT.......................................................................................................................................................................................................................................................................................................................................................22125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035907000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................TTG---TAG-------------AT-AACGTAG---TTAACG-----A...............................................................................................................................................................................................................................................22116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000952000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................ATGAATTGCGTACACTTGCT-TGT....................................................................................................................................23116.001600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000051100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TTTG---TAG-------------AT-AACGTAG---TTAACG-----AGGGC...........................................................................................................................................................................................................................................27113.00130000000000000000000000100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000011000000100000000000000000101200000
..........................................................................................................................................................................................AAGC-----------------CTTCA-------TG---------------TAGAT---TGTTGATT..................................................................................................................................................................24111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020520000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................T-----TGA---TAAAAAT---GTAGCCT-----------TTTT......22111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011300000000000000000000000000000000000000000000001101020000000000000000000000000000000000000000000000000000
.......................AAAAT-------------CCAGTTCT----G--GTGGATCCGT............................................................................................................................................................................................................................................................................................................................................................24111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006203000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTATGAATTGCGTACACTTGCT-TGTA...................................................................................................................................26110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000100000000001212000
...........................................................................................................................................................................................AGC-----------------CTTCA-------TG---------------TAGAT---TGTTGATT..................................................................................................................................................................23110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TGCTTTG---TAG-------------AT-AACGTAG---TTAACG-----AGG.............................................................................................................................................................................................................................................2819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000
................................................................................................................................TTG---TAG-------------AT-AACGTAG---TTAACG-----AGGGC...........................................................................................................................................................................................................................................2619.0090000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000011000000100000000000000000000300000
................................................................................................................................TTG---TAG-------------AT-AACGTAG---TTAACG-----AGG.............................................................................................................................................................................................................................................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000224000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TTTATGAATTGCGTACACTTGCT-TGTA...................................................................................................................................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000301020
.........CACGGCCTCCAACTAAAAT-------------CCAGT................................................................................................................................................................................................................................................................................................................................................................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................CTTTG---TAG-------------AT-AACGTAG---TTAACG-----A...............................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................GGT------AAGC-----------------CTTCA-------TG---------------TAGAT---TGTTGATT..................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TTTTATGAATTGCGTACACTTGCT-TG.....................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000110100002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AT--------------------------AT------------------AT-----TGA---TAAAAAT---GTAGCCT-----------TTTTT.....2815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTATGAATTGCGTACACTTGC.........................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000010000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................TTTATGAATTGCGTACACTTGCT-TG.....................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000
............................................................................................................................................................................................................................................................................................................................................................................T-----TGA---TAAAAAT---GTAGCCT-----------TTTTTAGC..2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TTG---TAG-------------AT-AACGTAG---TTAACG-----AG..............................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AT----TGA-----------------GATACTTCTGCCAT-TTGCTTTG---T.......................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AT---TGTTGATTAATTTTATGAAT......................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................GC-----------------CTTCA-------TG---------------TAGAT---TGTTGATTAATT..............................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
......................TAAAAT-------------CCAGTTCT----G--GTGGATCCGT............................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AT--------------------------AT------------------AT-----TGA---TAAAAAT---GTAGCCT-----------TTTTTA....2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................AT-TTGCTTTG---TAG-------------AT-AACGTAG---TT.........................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CAACTAAAAT-------------CCAGTTCT----G--GTGGATC...............................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................T----G--GTGGATCCGTAAAGTAAATA..................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TTTG---TAG-------------AT-AACGTAG---TTAACG-----A...............................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................AG-------------AT-AACGTAG---TTAACG-----AGG.............................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TTTTATGAATTGCGTACACTTGCT-TGTA...................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000
...........................................................................................................................TTGCTTTG---TAG-------------AT-AACGTAG---TTAACG-----AG..............................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TACTTCTGCCAT-TTGCTTTG---TAG-------------AT-.....................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TG---TAG-------------AT-AACGTAG---TTAACG-----AGGGC...........................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................TAG-------------AT-AACGTAG---TTAACG-----AGG.............................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AT------------------AT-----TGA---TAAAAAT---GTAGCCT-----------..........2113.0030000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................TAAAAT-------------CCAGTTCT----G--GTGGATCCGTA...........................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TGCGTACACTTGCT-TGTATT--TTT............................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................GCGTACACTTGCT-TGTATT--TTTAATGAAT.....................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................AT-----TGA---TAAAAAT---GTAGCCT-----------TT........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAAAT-------------CCAGTTCT----G--GTGGA.................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................G--GTGGATCCGTAAAGTAA.....................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AA--AT--------------------------AT------------------AT-----TGA---TAAAAAT---G...........................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................AT-----TGA---TAAAAAT---GTAGCCT-----------TTTTTA....2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CTGCCAT-TTGCTTTG---TAG-------------AT-AACGT................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AT--------------------------AT------------------AT-----TGA---TAAAAAT---GTAGCCT-----------TTT.......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TAT----TGA-----------------GATACTTCTGCCAT-TTGC...............................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................GATACTTCTGCCAT-TTGCTTTA---........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TAAAAT-------------CCAGTTCT----G--GTGGAT................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TACTTCTGCCAT-TTGCTTTG---T.......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................T--TTTAATGAATTTTATGC----ATCAA--A..................................................................................................2411.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...........................................................................................................................TTGCTTTG---TAG-------------AT-AACGTAG---TTAAC......................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TTTTATGAATTGCGTACACTTGCT-.......................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................GATACTTCTGCCAT-TTGCTT.............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
GGTGGCCATCACGGCCTCCAACTAAAAT-------------CCAGCTCT----G--GTGGATCCGTAAAGTAAATACCTGGTA------GA-----------------GAAGCCTCTGCTAT-TTGCTTTG---TAG-------------TT-A-----------AACG-----AGGGCC------AAGC-----------------TCTCA-------TG---------------TAGAT---TGTTGATTAATTTTATGAATTGCATACACTTGCT-TGTATT--TTTAATGAATTTTTTACATACATATA--ATCAAAATGAAG---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................AAT-------------CCAGCTCT----G--GTGGATCCGT............................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...................................................................................................................................................................................................................A-------TG---------------TAGAT---TGTTGATTAATTT.............................................................................................................................................................2111.0011000000
............................................GCTCT----G--GTGGATCCGTAAAGTA......................................................................................................................................................................................................................................................................................................................................................2211.0010000100
...........................................AGCTCT----G--GTGGATCCGTA...........................................................................................................................................................................................................................................................................................................................................................1811.0011000000
........................................................................................................................................G-------------TT-A-----------AACG-----AGGGCC------AAGC-----------------TCT............................................................................................................................................................................................................2111.0010100000
.......................................................................................................................................................T-A-----------AACG-----AGGGCC------AAGC-----------------TC.............................................................................................................................................................................................................1811.0010100000
.........................................................................ATACCTGGTA------GA-----------------GAAGCCTCT.........................................................................................................................................................................................................................................................................................................2111.0010000100
...............................................................................................................................................................................GGGCC------AAGC-----------------TCTCA-------TG---------------TAGAT---TT........................................................................................................................................................................2311.0011000000
........................................................................................................................................G-------------TT-A-----------AACG-----AGGGCC------AAGC-----------------TCTCA-------TG---------------TAGA..............................................................................................................................................................................2911.0010100000
................................................................................................................................................................................................................................................................TTATGAATTGCATACACTTGC.........................................................................................................................................2111.0011000000
.................................................................................TA------GA-----------------GAAGCCTCTGCTAT-TTGCTTTG---........................................................................................................................................................................................................................................................................................2611.0010001000
droYak3
GGTGGCCATCACGGCCTCCAACTAAAAT-------------CCAGCTCT----G--GTGGATCCGTAAAGTAAATACCTTATA------GA-----------------GAAGCCTCTGCTAT-TTGCTTTG---TAG-------------AT-AAAGTAG---TTAACG-----AGGACT------AAGC-----------------TCTCG-------TG---------------TAGAT---TGTTGATTAATTTTATGAATTACATACACTTGCT-TGTATT--TTTAATGAATTTTTTAC----GTATT--ATCAAAATGA-ATATCGA---------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................AAT-------------CCAGCTCT----G--GTGGATCCGT............................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
................................................................................................................................................................................GACT------AAGC-----------------TCTCG-------TG---------------TAGAT---TGT.......................................................................................................................................................................2311.00100000010000
droEug1
AGTGGCCATCACGGCCTCCAATTAAACT-------------C---TTCT----G--GTGTCTCCGTAAAGTAAATATCTCATA------GA-----------------GAATCCTATGTTATTTTGCTTTG---TAG-------------AT-CAAGTAT---TTAACG-----AGGGTT------CGTC-----------------CCTCG-------AG---------------TAGAT---TGTTGATTATTTTTATGGAT-ACATAC----GCT-TGTATT--TTTATTGAATTTT-TAT----ATAAA--ATCGAA-TGGAAAATAGAATCCATAATCTT-------------------T-----TGC--TTAAAAAA---ATAGTCT---------GCTTACAAGGTASizeHit CountTotal NormTotal
No Reads
droBia1
GGTTGCCATCGCCGCCTCCAACTGAAAA-------------CCTCTTCC----G--GCGGCCCCGTAAAGTAAATAACTCATT------CA-----------------GATACCTCTGCTATATTGCCTTA---TAG-------------AT-CAAGTAG---TTAACG-----AGGGTT------CATC-----------------TCTCG-------AG---------------TAGAT---TGTTGATTATTTTTATGAATTACTTACGCTTGCT-TGTATT--TTTATTGAATTTT-TA------TAAA--ATCGAAATGGAAAATCGAAA------CTATTTGCTTGAATAAC-----A-------AT--TT-GAAGG---TGAAGAT-----------ATTTAAGACGSizeHit CountTotal NormTotal
No Reads
droTak1
GGTGGCCATTACCGCCTCCAACTAGAGGAAAACCACAGCCTCCTCATCT----G--GTGGCTCCGTAAAGTAAATA--TTATAG---CACA-----------------GAAACCTCTGCTAT-TTGCCTTG---TAG-------------ATTCAAGTAG---TTAACG-----AGGGTT-----ACGCC-----------------TCTCG-------CT---------------TAGAT---TGTTGATTAATTTTATGGATTACCTACGCTCGCT-TGTATT--TTTATTGAATTTT-TAT----ATAAA--ATCGAAATGGAAAATCGACTGCCACAT------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGTGGCCATTGCTGCCTCCAACTAATAC-------------CTC-TTTC----G--GTGGATCCGTAAAGTAAATACCTTATA------GA-----------------GAAGCCTCGGCTAT-TTGCTTTG---TAG-------------AT-CAAGTAG---TTG-CG-----AGTGTT------TATC-----------------CCTCG-------AG---------------TAGAT---TGTTGATTATTTTTATGGATTACTTACACTTGCT-TGTATT---TTATTGAATTTT-TAC----ATAAA--ACCGAAATAGAAATTCGAATGCGAAACAA----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGTGGCCATTGCGGCCTCTAACTAATAA--------------------T----G--GTGGATCTGTAAAGTAAATACCTTTTA------AA-----------------GAAGCCTTGGCTAT-TTGCTTTT---TAG-------------AT-AAAATAG---TAGACG-----AGTGTT------CATC-----------------TCTCG-------TG---------------TAGAT---TGTTGATTAATTTTATGGATTGCTTTC----GCT-TGTATG--TTTATTGAATTTTTTAT----ATACC--ATCGATATGGAAAATCGAATGCCAATCAA----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GATAGCCATCGCAGCCTCCAACTAAAC------------------TTCT----G--GTGGAACCGAAAAGTAAATACCTTATT------GA-----------------GATACCTCGGCTAT-TTGTTATG---TAG-------------AC-CAAGTAG---TTAACG-----AGGGCT------TGTC-----------------TCTCG-------GG---------------TAGTT---TGTTAATTAATTTTATGAATTTCTTACGCTTGCT-TGTATT--TTTATTGAATTTT-TAT----ATAAA--AACGCAATGGAAAATTGAATACCAACCAAA------------------ATTTAAATGGTATAGGAAATCACATATCCTTTTTAC--TAATTGTAAACTASizeHit CountTotal NormTotal
No Reads
droKik1
GGTGGCCATTGCGGCTTCAAATTAAACA-------------CC--TTTC----G--GTGGCTCTGTAAAGTAAATACCTA--A------GA-----------------TAATCCTTCGCCAG-TTGCTTTG---TAG-------------AT-CAAGTAG---TTGCCG-----AGGGTG-----TAATC-----------------ACTCG-------GG---------------TAGAT---TGTTGATTAATTTTATGAATTA----CGCTTGCT-TGTAT-----TATTGAATTGTTTAC----ATCAG--ATCGAAATGAATATTCGATTT------TTTCAGCTTAAAACACCCATTATTTT--AGT--TTGGAAAC---ATAGTAC-----------ATTAAGACTGSizeHit CountTotal NormTotal
No Reads
droAna3
GGTGGCCATTGCGGCCTCCAACTAAAGC-------------ATC-GTTT----C--GTGTCTCCGCA-AGTAATTGACTTCTTTCTTCAGA-----------------GATGCATAGATTAG-TTGCTTTA--GCAT-------------AT-CCTGTAG---TTTCCA-----AGGGCT------TTTC-----------------CCTTG-------GC---------------TAGAT---TGTTGATTAATTTTATGAATTGCTTAAGCTTGCT-TGTAT-----TATTGAATTTT-TAT----AAAAAA-AAAAAATTTGAAAATCTA-----CA-C-------------------TCGTT---------------------------TTTCACAC--AATTTCAATTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................GC-------------ATC-GTTT----C--GTGTCTCCGCA-..........................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................................................................................................................................................................................................................................................TTGCTTAAGCTTGCT-TGTAT-----.............................................................................................................................2011.001100000
droBip1
GGTGGCCATTGCGGCCTCCAACTAAAGC-------------ATC-GTTT----C--GTGTCTCCGCA-AGTAATTGACTTATTTCTTCAGA-----------------GATGCATATATTAG-TTGCTTTTA-CTATAAC----------GC-TTAGTAG---TTTTTA-----AGGGTT------T-TC-----------------CCTTG------CCT---------------TAGAT---TGTTGATTAATTTTATGAATTGCTTAAGCTTGCT-TGTAT-----TATTGAATTTT-TAT----AAAAAACAT------TGAAAAACCA-----CAAC-------------------TTGTT---------------------------TT--ACACTA-TTTATGACTGSizeHit CountTotal NormTotal
No Reads
dp5
AGTGGCTATTGCTGCCACCAACTAAAGC-------------TCC--CA-GGAGAGGGGTACAGTGCA-AGTAATTAAGTTTTAATTTTTGTTTTTTT-----TTTGCTTAACTTTGC--------------GCTAGTAGTGCTTTGGTAGA-----ATATTATTATATAGTGCATTAGCAAAGCTA--TCCCAAGTCGAGATTACCTACTCGGGTACGTTT---------------TAGAT---TGTTGATTAATTTTATGAATTGCCCAT----GCT-TGTATTATACCATTGGATTTG-TAC----ATAA------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................AATTGCCCAT----GCT-TGTATTA................................................................................................................................2011.0010010000000
...............................................................................................................................................................................TAGCAAAGCTA--TCCCAAGTCGAGATTAC.................................................................................................................................................................................................................2811.0010100000000
........................................................................................................................................TAGTGCTTTGGTAGA-----ATAT..............................................................................................................................................................................................................................................................1911.0010010000000
..............................................................................................................................................................................TTAGCAAAGCTA--TCCCAAGTCGAGAA....................................................................................................................................................................................................................2611.0010100000000
....................................................................................................................C--------------GCTAGTAGTGCTTTGGTAGA-----ATATTA............................................................................................................................................................................................................................................................2711.0010000100000
..............................................................................................................................................................................................................TACTCGGGTACGTTT---------------TAGAT---TGTTGAT...................................................................................................................................................................2711.0010000001000
.....................................................................................................................................................................................................GAGATTACCTACTCGGGTACG....................................................................................................................................................................................................2111.0010000100000
droPer2
AGTGGCTATTGCTGCCACCAACTAAAGC-------------TCC--CA-GGAGAGGGGTACAGTGCA-AGTAATTAAGTTTTTATTTTTGTTTTTTT---TTTTTGCTTAACTTTGC--------------GCTAGTAGTGCTTTGGTAGA-----ATATTATTATATAGTGCATTAGCAAAGCTA--TCCCAAGTCGAGATTACCTACTCGGGTACGTTT---------------TAGAT---TGTTGATTAATTTTATGAATTGCCCAT----GCT-TGTATTATACCATTGGATTTG-TAC----ATAA------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................TTTTTGCTTAACTTTGC--------------GCTAGTAG...................................................................................................................................................................................................................................................................................2511.001010000
droWil2
AGTGCCCATTGCGGCCTCGAACTGAGAG-------------CTGG-GA-CAATCCTGGCACTCTGTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......CATTGCGGCCTCGAACTGAGA...................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
droVir3
-GTGCCCATTGCGGCCACCAACTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....CCATTGCGGCCACCAACTA......................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
droMoj3
-GTACCCATTGCGGCCATCAACTAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GATACCCATTGCGGCCACCAACTAGAGG-------------GGGGAGCTGGAAG--GTGGCGCAGTCAAGTAAATGAATTTTGCCATTTGATATTTGCTTTTTAAACTTGCATTTTA--------------ACCCCAACCGCTTA-GTAGAA-AAAGTAG---TATATATAT------AA------TAT---------ATATAGCTTAACTTGGCGCTTTCTAGAATGAATTTGTATGAATTTATGTTGCTTACTTTTATTAATTGCAAATCTTTGCTTTGTATTATTTTATTGAATTTTTTAT----AAAAA---CAAACATTGAGA--------------------------------------------------------------TCA-----------TGCTTGATTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:44 AM