ID:

dsi_11131

 Coordinate:

x:1613101-1613355 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

Antisense to five_prime_UTR [x_1612925_1613119_-]; Antisense to exon [x_1612922_1613119_-]; Antisense to three_prime_UTR [x_1613080_1613639_-]; Antisense to exon [x_1613080_1613955_-]

No Repeatable elements found

Sense Strand Reads

CCCGTAGCTGACGTGTTCGGTTCTGCGACAAATGTTTACCGTGGCTTTGTGTGAGTGCGGGTAGTGTGACCAGCGCAGTGTTAATGCGCCTTGGGCCAAAAGGGGTAAGCTTGTGGATACCCTGCCATTTTTTTTTGCTACTCTATTTGGAAAATTTTTATGTGTCTAGCCTTAGCAAGTTCACGACACCATCACTTCTTACCAGTGTTGAATTGAACATTTCAAGATTGTGCAAAGCATTTATTTAATAGGTTGTACCAGGCATATATTAACATATATAAACAAACATACTCTTTTCACTGTAGGAAGTAATGAGTCCAAGCATCGCCTTTACCAACACCGGCCGACACCGGCT
**************************************************(((((...(((.((((((.((((((((.......)))))..))).(((((.((((((.((..((((........))))........)))))))).)))))....((..((((((((((((((......(((((((((((...............))))))...)))))......((((.((((...))))..))))...))))).....)))))))))..))..............)))))))))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
...............................................................................GTTCATGCGCCTTGGGCCG................................................................................................................................................................................................................................................................. 19 2 1 1.00 1 0 0 1 0 0 0 0 0
.........................................TGGCTTTGTGTGAGTGCGGG...................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
........TGTCGTGTTCGGTTGTCCGACA..................................................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................TGTGATTGCGGGTAG................................................................................................................................................................................................................................................................................................... 15 1 7 0.71 5 0 5 0 0 0 0 0 0
.................................................TGTGATTGCGGGTAGG.................................................................................................................................................................................................................................................................................................. 16 2 20 0.40 8 0 8 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................CAGTCTTTTCACTGTAGG................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0
...............................................TGCGTGAGTGGTGGTAGTGTG............................................................................................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 1 0 0 0
....................................................................................................................................TTTTGCGACTGTATTTGCAAAA......................................................................................................................................................................................................... 22 3 8 0.13 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................ATAGATTCTTCCAGGCATAT........................................................................................ 20 3 13 0.08 1 0 0 0 0 0 0 1 0
.........................CGACAAATGTTTACCGAGCT...................................................................................................................................................................................................................................................................................................................... 20 3 13 0.08 1 0 1 0 0 0 0 0 0
......................................................GTGCGGGTAGTTTGACT............................................................................................................................................................................................................................................................................................ 17 2 14 0.07 1 0 0 0 0 0 1 0 0
................................................CTGTGATTGCGGGTAG................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0
............................................................GTAGTGTGTCCAGCGCGA..................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0
...........................................................................................................................GCTATTTTTTTTTGCT........................................................................................................................................................................................................................ 16 1 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

###################################################################################################################################################################################################################################################################################################################################################################
GGGCATCGACTGCACAAGCCAAGACGCTGTTTACAAATGGCACCGAAACACACTCACGCCCATCACACTGGTCGCGTCACAATTACGCGGAACCCGGTTTTCCCCATTCGAACACCTATGGGACGGTAAAAAAAAACGATGAGATAAACCTTTTAAAAATACACAGATCGGAATCGTTCAAGTGCTGTGGTAGTGAAGAATGGTCACAACTTAACTTGTAAAGTTCTAACACGTTTCGTAAATAAATTATCCAACATGGTCCGTATATAATTGTATATATTTGTTTGTATGAGAAAAGTGACATCCTTCATTACTCAGGTTCGTAGCGGAAATGGTTGTGGCCGGCTGTGGCCGA
**************************************************(((((...(((.((((((.((((((((.......)))))..))).(((((.((((((.((..((((........))))........)))))))).)))))....((..((((((((((((((......(((((((((((...............))))))...)))))......((((.((((...))))..))))...))))).....)))))))))..))..............)))))))))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
...............AAGCCAAGACGCTGTTTACA................................................................................................................................................................................................................................................................................................................................ 20 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0
...............AAGCCAAGACGCTGTTTAC................................................................................................................................................................................................................................................................................................................................. 19 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
.......GACTGCACAAGCCAAGACGCTGTTTA.................................................................................................................................................................................................................................................................................................................................. 26 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.................GCCAAGACGCTGTTTACAA............................................................................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......GACTGCACAAGCCAAGACGCTGTC.................................................................................................................................................................................................................................................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.GGCATCGACTGCACAAGCCAAGACGC........................................................................................................................................................................................................................................................................................................................................ 26 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0
...............................TACAAATGGCACCGAAACACACTCA........................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..GCATCGACTGCACAAGC................................................................................................................................................................................................................................................................................................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......CACTGCACAAGCCAAGAC.......................................................................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................CCAAGACGCTGTTTACAAA.............................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......GACTGCACAAGCCAAGACGCTG...................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................AGTGACATCCTTCATTACTCAGGTT.................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........CTGCACAAGCCAAGACGCTGTTTACAA............................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................AATCGTTCAAGTGCTGTGGTAG.................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................AGCCAAGACGCTGTTTACA................................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...CATCGACTGCACAAGCCAAGACG......................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................CCCTGCATTAGTCAGGTTCGT............................... 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........CTGCACAAGCCAAGACG......................................................................................................................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................TGGGCACAACTTAACTTC......................................................................................................................................... 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......CGACTGCACAAGCCAAGACGC........................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................GCCAAGACGCTGTTTACA................................................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TGTTTGTATGAGAAAAGTGACATCCT................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................AAAGTGACATCCTTCATTACTCAGGTT.................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................AGTGATGAGGCAGTGAAGA............................................................................................................................................................ 19 3 7 0.43 3 0 0 0 0 0 0 0 0 3 0 0 0
..........................................................................................................................................................................................................................................................................................................................TCAGGTTCGTGGCGG.......................... 15 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................GCTTGTGGCCGGCTG....... 15 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................AAGTTCTAAAACGTTCCGGAA.................................................................................................................. 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................AAAAAAAAACGATGTTATGAAC.............................................................................................................................................................................................................. 22 3 10 0.20 2 0 0 0 0 0 0 0 0 0 0 2 0
.................................................................................................................................................................................................................................................................................................................................CCTATCGGAAATGGTTGTGAC............. 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................ATGATTGTGGCAGGCT........ 16 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................GCTTGTGGCCGGCTGAG..... 17 2 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................................TGATTGTGGCAGGCTATG..... 18 3 18 0.11 2 0 0 0 0 0 0 2 0 0 0 0 0
.GGCATAGACTGTACAAGCG............................................................................................................................................................................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................CTACATGGCTCAGGTTCGT............................... 19 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TCAGGTTCGTAGCGT.......................... 15 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TCAGGTTCGTAGCGAGA........................ 17 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................CTTCGGGACTCAGGTTCGT............................... 19 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................AGTCAGGTTCGTGGGGGAA........................ 19 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................CTGCATTAGTTAGGTTCGT............................... 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TCAGGTTCGTACCGGC......................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................AAAAAAAACGACGAGATGA................................................................................................................................................................................................................ 19 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................................TCATTCTTCAGGTTCGT............................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................CGTTGATTACTAAGGTTCG................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:1613051-1613405 + dsi_11131 C-----------------CCGTAGCTGACGTGTTCG------GTTCTG-CGAC-AAATGTTTACCGTGGCTTTGTGTGA------------------------GTGCG--GG---TAG------TG------------------------TGAC-CAGCGCA--------------------------------------GTGTTAATGCGCCTTGGGCCAA----AAGGGGTAAGCTTG-TGGATACCCTGC-CATTTTTTT---------------TTGCT-ACTCTATTTGGAAAATTTTTATGT--GTCT-AGCCTTAGCAAGTTCACGACACCA-TCACTTCTTACCAGTGTT-----------G-----------------------------------------------------------------------------------------------A---------------------ATTGAACATTTCAAGATTGTGCAAAGCATTTATTTAATAGGTTGTACCAGGCATATATTAACATATATAAACAAACATACTCTTT---------------TCACTGTAGGAAGTAAT-GAGTC--------------CAAGCATCGCCTTTACCAACACCG------------------------------------------------------------------------------------------GCCGACACCGGC--T
droSec2 scaffold_10:1556252-1556605 + C-----------------CCGTAGCTGACGTGTTCG------GTTCTG-CGAC-AAATGTTTACCGTGGCTTTGTGTGA------------------------GTGCG--GG---TAG------TG------------------------TGAC-CAGCGCA--------------------------------------GTGTTAATGCGCCTTGGGCCAA----AAGGGGTAAGCTTG-TGGATACCCTGC-CATTTTTT----------------TTGCT-ACTCTATTTGGAAAATTTTTATGT--GTCT-AGCCTTAGAAAGTTCACGACACCA-TCACTTCTTACCAGTGTA-----------G-----------------------------------------------------------------------------------------------A---------------------ATTGAACATTTCAAGATTGTGCAAAGCATTTATTTAATAGGTTGTACTAGGCATATATTAACATATATAAACAAACATACTCTTT---------------TCACTGTAGGAAGTAAT-GAGTC--------------CAAGCATCGCCTTTACCAACACCG------------------------------------------------------------------------------------------GCCGACACCGGC--T
dm3 chrX:1755757-1756135 + C-----------------CCGTAGCTGACGTGTTCG------GTTCTG-CGAC-AAATGTTTACCGTGGCTTTGTGTGA------------------------GTTCG--GG---TAG------TG------------------------TGAC-CA-----GCGCCACTGC-------------------GGAAACACAGTGTTAATACGCCTTGGGCCAA-GGTAGGAGGTAGGCCCG-TGGATACCCTGC-CATTTTTTT------TTTTTTTTTTTGCT-ACTCCATCTAGAAAATTGTT--GT--GTCT-AGCCTTAGCAAGTACACCGCACTACTCACTTTTCACCAGTGTA-----------G-----------------------------------------------------------------------------------------------A---------------------ATTTAACATTTCAAGATTGTGCAAAGCAATTATTTAATAGGTTGTATTAGGCATATATTAACATACATAAACAGACATACTCTT----------------TCACTGT---AAGTAAT-GAGTC--------------CAAGCATCGCCTTTACCAACACCG---------------------------------------------------------------------------------------CCGGCCGACACCGGC--T
droEre2 scaffold_4644:1735008-1735387 + C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGACAAAATGTTTACGGTGGCCTTGTGTGA------------------------GTGCG--GG---TAG------TG------------------------TGAC-CA-----AAGCTACTGC-------------------GGAAACGCAGCGTTAATGCGCCGCTGACCAA----AGAGAATAAGCCCGTGGGATACCCTGG-AATTTTTT----------------GTATT-ACTGTATCTCGAAAATAATTATGT--GTCT-AGTCCTTTTAAGACTATTACACCATTCAGTTCTCATCAGTGTAAACC--CTTTAA-----------------------------------------------------------------------------------------------A---------------------ATTGAAAATTTCAAGATTGTGCAAAACATTTATTTCGTAAGTTGTACTAGGCATATATTAACT--CTTGAACAAACAAACTCTT----------------TCACTGTATAAAGTAAT-GAGTC--------------AAAGCTTTACCTTTACCAACACCG---------------------------------------------------------------------------------------ACAGCCGGCACCGGC--T
droYak3 X:1600772-1601149 + C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGCC-AAATGTTTACGGTGGCTTTGTGTGA------------------------GTGCG--GG---TAG------TG------------------------TGAC-CA-----AAGCCACTCC-------------------GGAAACGCAGCGTTAATGCGCCTCTGACCAA----AAAGATTAGGCC-GTGGGATACCCTGG-CATTATAT----------------TTATT-ACTGTGTCTGAAAAATTACTGTGT--GCCT-AGCCCTTTGAAAACTATTACACTATTCACTTGTCATCTGTGTAAATC--CTGTAG-----------------------------------------------------------------------------------------------G---------------------ATAGATGATTTCAAGATTGCGCCAAACATTTATCTCGCAAGTTGTACTAGGCATATGTTAACT--CTTAAACAAACATACTCTT----------------TTAATGAAACAAGTAGT-GAGTT--------------CAAGCTTTACATTTACCAACACCG---------------------------------------------------------------------------------------CCAGCCGGCACCGGC--T
droEug1 scf7180000409182:305292-305369 + C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGACAAAATGTTTACGGTGGCTCTGTGTGA------------------------GTGTG--AA--CTGA------TG------------------------TGAC-CA-----GAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301760:4359284-4359363 + C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGACAAAATGTTTACGCTGTGTGTGTGCGT------------------------GTGCG--TTGTGTGG------TG------------------------TGAC-CA-----GAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415704:1361078-1361400 + C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGACAAAATGTTTACGCTGTGCGTGTGTG--------------------------TTG----A---AATAATCGATGTTGCTATCGGTGATATCGATGGTTGGGC-CC-----CGGCCACCGCCATCGATATTTTTTAGACTACTCTTACGCAGGAAA-----------------TGTGAGTGACGACTG-CGGGATACCCTGT-TTCGCGTTT---------------------------------------------------------------------------------------CGGGTATA-----------T----------------------------------------------AATTATACAT----------------------ATTTGT-ATACGTTTAAAATTTGCTCTAT-CATGTATGTATAGATCGATTAAAAGTTT---TAAACCTTTTTTTTATAA--------------------------TT-----------------TAATAGCAATAACTTACAGGGT---ACGT---------------------------------------GTACACTC------------------------------------------------------------------------------------------CCCCTTTTTGGC--A
droEle1 scf7180000491001:1258467-1258616 + C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGACAAAATGTTTACGCTGGCTGTGTGTGA------------------------GTGCG--GG--CCAG------TG------------------------TGAC-CA-----GAGTCGCCAC-------------------GCAAA-GCACCGTAAAATCTCTGTT---GATAGGTGGCGCAACGGCTTT-TGAATACCCTAC-TACTTACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779506:1344993-1345419 - C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGACTAAATGTTTACGCTGGCTGTGTGTGA------------------------GTGCG--GA--CCGG------TG------------------------TGAC-CA-----GAGTCACAGC-------------------GCAAATGCACCGTAAAATCCCT---GGCGATGGGGTGCACACCGACTAG-ACGATACCCTGC-AACATACAAAGCTTTTTTTTTTTTTAACC-AATCCCT--------------TGTGAATCATAAC-C----AAGAT--------------------------------------------ATACTAATTTCTGACTACGAAAAGAAAATCAAGTCGGCTTACTAGTTATACAGAGACCATTATGAATTTATGCTCATTTATCCTACGCATAACTTTTCCTATGAAC------------AACAA--------------------------TACAGATTGGAGCTGTATGTTATTTATTTATTT-----------------AAATAGCCTTTACTTC-----------------------------------------------------TTCAATCAAAGGT---------------------------CAAATTTTGTATATGTCACCCTATACTACATTAAATTTATG-------------TTTTCCAGCGACGAC--T
droFic1 scf7180000454072:2867794-2868184 + C-----------------GCGTAGCTGACGTGTTCG------GTTCTA-CGACAAAATGTTTACGGTGGCTGTGTGTGA------------------------GTGCG--GG--ACAG------TG------------------------TGAC-CA-----AAGCCACTGT-------------------GCATATTCACCGCAAA-----------------GCAGAGTATCGGTAA-CGGGATACCCTGCACATTTTTT----------------TTCTTAACTCTCCAT--AACTTTTTTTTGTAGGTCCCAGC-T----AAGTTC--CATTTTATTTACTTCATTCCTTTATCAGACATTTATTGTATATTTTA-TTTTTCAACAGGTAAAGAAAAACA------------------------------------------------------------------------------------------------------------TCATTCAGCTTTC-----------------------------------------------------------------------AAAGTATTTAAGTCAGATCTGAAACACTAAAGCATTCCCTGTTCCGACAACGAAGGGCTACTATTAATGTACCTACCAAACTCTACAAATTTCGT-----------------------------TGTTTTTCAACACCCAGAG-TTACACCGGC--T
droKik1 scf7180000302469:1171859-1171920 + C-----------------GCGTAGCTGACGTGTTCG------GTTCTGGC-----GATGTTTACGGTGC----------------------------------GCGGT--GG--CCAG------TG------------------------TGGC-CA-----AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13117:1056326-1056424 + CAATCCTAAACCGAATCCG-CTAGCTGACGTGTTCG------GTTCTG-CGAC-AAATGTTTACGCTGGCTGTATGTGT------------------------GTTGC--GT---CTG------TG------------------------TGTCACA------GGCCA--------------------------------GTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396425:1058871-1058969 - CAATCCTAAACCGAATCCG-CTAGCTGACGTGTTCG------GTTCTT-CGAC-AAATGTTTACGCTGGCTGTGTGTGT------------------------GTTGC--GT---CTG------TG------------------------TGACACAGACCAGAG--------------------------------------TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1e:3768086-3768138 + C-----------------GCGTAGCTGACGTGTTCG------GGTA---------------------------------------------------------GTTTGGTTA--CCAA------TG------------------------TGAC-CG-----TAGACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT
droPer2 scaffold_17:701567-701619 + C-----------------GCGTAGCTGACGTGTTCG------GGTA---------------------------------------------------------GTTTGGTTA--CCAA------TG------------------------TGAC-CG-----TAGACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT
droVir3 scaffold_12970:1160686-1160776 - C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CAACAAAATGTTTACGATTGCTT-------GCGTATGTGTGTAAGTGATGACAG---------------------CG------------------------CA---CAGCGCA--------------------------------------CTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAT
droMoj3 scaffold_6308:1236051-1236136 + C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CAACTAAATGTTTACGATTGCGT-------GCGTATGTGTGCTAGAGATGGCAG---------------------CG------------------------CGAA-TAGCA----------------------------------------CAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15081:1760564-1760658 - C-----------------GCGTAGCTGACGTGTTCGATATTGGTTCTG-CAAAGAAATGTTTACGATTGCGT-------GCGTATGTGTGTAAGTGA---------------------------TG------------------------ACAG-TAGCGCA-----A--------------------------------GTTTTGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
C-----------------CCGTAGCTGACGTGTTCG------GTTCTG-CGAC-AAATGTTTACCGTGGCTTTGTGTGA------------------------GTGCG--GG---TAG------TG------------------------TGAC-CAGCGCA--------------------------------------GTGTTAATGCGCCTTGGGCCAA----AAGGGGTAAGCTTG-TGGATACCCTGC-CATTTTTTT---------------TTGCT-ACTCTATTTGGAAAATTTTTATGT--GTCT-AGCCTTAGCAAGTTCACGACACCA-TCACTTCTTACCAGTGTT-----------G-----------------------------------------------------------------------------------------------A---------------------ATTGAACATTTCAAGATTGTGCAAAGCATTTATTTAATAGGTTGTACCAGGCATATATTAACATATATAAACAAACATACTCTTT---------------TCACTGTAGGAAGTAAT-GAGTC--------------CAAGCATCGCCTTTACCAACACCG------------------------------------------------------------------------------------------GCCGACACCGGC--TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................TGGCTTTGTGTGA------------------------GTGCG--GG---..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
droSec2
C-----------------CCGTAGCTGACGTGTTCG------GTTCTG-CGAC-AAATGTTTACCGTGGCTTTGTGTGA------------------------GTGCG--GG---TAG------TG------------------------TGAC-CAGCGCA--------------------------------------GTGTTAATGCGCCTTGGGCCAA----AAGGGGTAAGCTTG-TGGATACCCTGC-CATTTTTT----------------TTGCT-ACTCTATTTGGAAAATTTTTATGT--GTCT-AGCCTTAGAAAGTTCACGACACCA-TCACTTCTTACCAGTGTA-----------G-----------------------------------------------------------------------------------------------A---------------------ATTGAACATTTCAAGATTGTGCAAAGCATTTATTTAATAGGTTGTACTAGGCATATATTAACATATATAAACAAACATACTCTTT---------------TCACTGTAGGAAGTAAT-GAGTC--------------CAAGCATCGCCTTTACCAACACCG------------------------------------------------------------------------------------------GCCGACACCGGC--TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
C-----------------CCGTAGCTGACGTGTTCG------GTTCTG-CGAC-AAATGTTTACCGTGGCTTTGTGTGA------------------------GTTCG--GG---TAG------TG------------------------TGAC-CA-----GCGCCACTGC-------------------GGAAACACAGTGTTAATACGCCTTGGGCCAA-GGTAGGAGGTAGGCCCG-TGGATACCCTGC-CATTTTTTT------TTTTTTTTTTTGCT-ACTCCATCTAGAAAATTGTT--GT--GTCT-AGCCTTAGCAAGTACACCGCACTACTCACTTTTCACCAGTGTA-----------G-----------------------------------------------------------------------------------------------A---------------------ATTTAACATTTCAAGATTGTGCAAAGCAATTATTTAATAGGTTGTATTAGGCATATATTAACATACATAAACAGACATACTCTT----------------TCACTGT---AAGTAAT-GAGTC--------------CAAGCATCGCCTTTACCAACACCG---------------------------------------------------------------------------------------CCGGCCGACACCGGC--TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................GTGGCTTTGTGTGA------------------------GTTCG--G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTTTTTT------TTTTTTTTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18201.653300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................GTTAATACGCCTTGGGCCAA-GG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CACTTTTCACCAGTGTA-----------G-----------------------------------------------------------------------------------------------A---------------------AT........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CCTTGGGCCAA-GGTAGGAGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TTCG------GTTCTG-CGAC-AAATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------TCACTGT---AAGTAAT-GAGTC--------------CAAGCA...........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................................................................................................................CATCTAGAAAATTGTT--GT--GTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ACCAGTGTA-----------G-----------------------------------------------------------------------------------------------A---------------------ATTTAACATT................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................GTGA------------------------GTTCG--GG---TAG------TG------------------------TGAC-CA-----G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................GTTTACCGTGGCTTTGTGTGA------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GACGTGTTCG------GTTCTG-CGAC-A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CCCG-TGGATACCCTGC-CATTTTTTT------TTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-GAGTC--------------CAAGCATCGCCTT....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TGTA-----------G-----------------------------------------------------------------------------------------------A---------------------ATTTAACATTTCAA............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATTATTTAATAGGTTGT.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGCCTTTACCAACA............................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TAGGAGGTAGGCCCG-TGGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................................................................................................G------TG------------------------TGAC-CA-----GCGCCACTGC-------------------GGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TTAGCAAGTACACCGCACTACT............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTTTTTT------TTTTTTTTTTTGCT-ACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TG-CGAC-AAATGTTTACCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---------------------------------------------------------------------------------------CCGGCCGACACCGGG--G1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................ATTTTTTT------TTTTTTTTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000040000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................CATTTTTTT------TTTTTTTTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTTTTTT------TTTTTTTTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................ATTTTTTT------TTTTTTTTTTTGCT-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGACAAAATGTTTACGGTGGCCTTGTGTGA------------------------GTGCG--GG---TAG------TG------------------------TGAC-CA-----AAGCTACTGC-------------------GGAAACGCAGCGTTAATGCGCCGCTGACCAA----AGAGAATAAGCCCGTGGGATACCCTGG-AATTTTTT----------------GTATT-ACTGTATCTCGAAAATAATTATGT--GTCT-AGTCCTTTTAAGACTATTACACCATTCAGTTCTCATCAGTGTAAACC--CTTTAA-----------------------------------------------------------------------------------------------A---------------------ATTGAAAATTTCAAGATTGTGCAAAACATTTATTTCGTAAGTTGTACTAGGCATATATTAACT--CTTGAACAAACAAACTCTT----------------TCACTGTATAAAGTAAT-GAGTC--------------AAAGCTTTACCTTTACCAACACCG---------------------------------------------------------------------------------------ACAGCCGGCACCGGC--TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGCC-AAATGTTTACGGTGGCTTTGTGTGA------------------------GTGCG--GG---TAG------TG------------------------TGAC-CA-----AAGCCACTCC-------------------GGAAACGCAGCGTTAATGCGCCTCTGACCAA----AAAGATTAGGCC-GTGGGATACCCTGG-CATTATAT----------------TTATT-ACTGTGTCTGAAAAATTACTGTGT--GCCT-AGCCCTTTGAAAACTATTACACTATTCACTTGTCATCTGTGTAAATC--CTGTAG-----------------------------------------------------------------------------------------------G---------------------ATAGATGATTTCAAGATTGCGCCAAACATTTATCTCGCAAGTTGTACTAGGCATATGTTAACT--CTTAAACAAACATACTCTT----------------TTAATGAAACAAGTAGT-GAGTT--------------CAAGCTTTACATTTACCAACACCG---------------------------------------------------------------------------------------CCAGCCGGCACCGGC--TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT--------------CAAGCTTTACATTTACCA...............................................................................................................2111.00101000000000
droEug1
C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGACAAAATGTTTACGGTGGCTCTGTGTGA------------------------GTGTG--AA--CTGA------TG------------------------TGAC-CA-----GAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGACAAAATGTTTACGCTGTGTGTGTGCGT------------------------GTGCG--TTGTGTGG------TG------------------------TGAC-CA-----GAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGACAAAATGTTTACGCTGTGCGTGTGTG--------------------------TTG----A---AATAATCGATGTTGCTATCGGTGATATCGATGGTTGGGC-CC-----CGGCCACCGCCATCGATATTTTTTAGACTACTCTTACGCAGGAAA-----------------TGTGAGTGACGACTG-CGGGATACCCTGT-TTCGCGTTT---------------------------------------------------------------------------------------CGGGTATA-----------T----------------------------------------------AATTATACAT----------------------ATTTGT-ATACGTTTAAAATTTGCTCTAT-CATGTATGTATAGATCGATTAAAAGTTT---TAAACCTTTTTTTTATAA--------------------------TT-----------------TAATAGCAATAACTTACAGGGT---ACGT---------------------------------------GTACACTC------------------------------------------------------------------------------------------CCCCTTTTTGGC--ASizeHit CountTotal NormTotal
No Reads
droEle1
C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGACAAAATGTTTACGCTGGCTGTGTGTGA------------------------GTGCG--GG--CCAG------TG------------------------TGAC-CA-----GAGTCGCCAC-------------------GCAAA-GCACCGTAAAATCTCTGTT---GATAGGTGGCGCAACGGCTTT-TGAATACCCTAC-TACTTACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CGACTAAATGTTTACGCTGGCTGTGTGTGA------------------------GTGCG--GA--CCGG------TG------------------------TGAC-CA-----GAGTCACAGC-------------------GCAAATGCACCGTAAAATCCCT---GGCGATGGGGTGCACACCGACTAG-ACGATACCCTGC-AACATACAAAGCTTTTTTTTTTTTTAACC-AATCCCT--------------TGTGAATCATAAC-C----AAGAT--------------------------------------------ATACTAATTTCTGACTACGAAAAGAAAATCAAGTCGGCTTACTAGTTATACAGAGACCATTATGAATTTATGCTCATTTATCCTACGCATAACTTTTCCTATGAAC------------AACAA--------------------------TACAGATTGGAGCTGTATGTTATTTATTTATTT-----------------AAATAGCCTTTACTTC-----------------------------------------------------TTCAATCAAAGGT---------------------------CAAATTTTGTATATGTCACCCTATACTACATTAAATTTATG-------------TTTTCCAGCGACGAC--TSizeHit CountTotal NormTotal
No Reads
droFic1
C-----------------GCGTAGCTGACGTGTTCG------GTTCTA-CGACAAAATGTTTACGGTGGCTGTGTGTGA------------------------GTGCG--GG--ACAG------TG------------------------TGAC-CA-----AAGCCACTGT-------------------GCATATTCACCGCAAA-----------------GCAGAGTATCGGTAA-CGGGATACCCTGCACATTTTTT----------------TTCTTAACTCTCCAT--AACTTTTTTTTGTAGGTCCCAGC-T----AAGTTC--CATTTTATTTACTTCATTCCTTTATCAGACATTTATTGTATATTTTA-TTTTTCAACAGGTAAAGAAAAACA------------------------------------------------------------------------------------------------------------TCATTCAGCTTTC-----------------------------------------------------------------------AAAGTATTTAAGTCAGATCTGAAACACTAAAGCATTCCCTGTTCCGACAACGAAGGGCTACTATTAATGTACCTACCAAACTCTACAAATTTCGT-----------------------------TGTTTTTCAACACCCAGAG-TTACACCGGC--TSizeHit CountTotal NormTotal
No Reads
droKik1
C-----------------GCGTAGCTGACGTGTTCG------GTTCTGGC-----GATGTTTACGGTGC----------------------------------GCGGT--GG--CCAG------TG------------------------TGGC-CA-----AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CAATCCTAAACCGAATCCG-CTAGCTGACGTGTTCG------GTTCTG-CGAC-AAATGTTTACGCTGGCTGTATGTGT------------------------GTTGC--GT---CTG------TG------------------------TGTCACA------GGCCA--------------------------------GTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................CGTGTTCG------GTTCTG-CGAC-A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droBip1
CAATCCTAAACCGAATCCG-CTAGCTGACGTGTTCG------GTTCTT-CGAC-AAATGTTTACGCTGGCTGTGTGTGT------------------------GTTGC--GT---CTG------TG------------------------TGACACAGACCAGAG--------------------------------------TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
C-----------------GCGTAGCTGACGTGTTCG------GGTA---------------------------------------------------------GTTTGGTTA--CCAA------TG------------------------TGAC-CG-----TAGACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
C-----------------GCGTAGCTGACGTGTTCG------GGTA---------------------------------------------------------GTTTGGTTA--CCAA------TG------------------------TGAC-CG-----TAGACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droVir3
C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CAACAAAATGTTTACGATTGCTT-------GCGTATGTGTGTAAGTGATGACAG---------------------CG------------------------CA---CAGCGCA--------------------------------------CTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
C-----------------GCGTAGCTGACGTGTTCG------GTTCTG-CAACTAAATGTTTACGATTGCGT-------GCGTATGTGTGCTAGAGATGGCAG---------------------CG------------------------CGAA-TAGCA----------------------------------------CAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
C-----------------GCGTAGCTGACGTGTTCGATATTGGTTCTG-CAAAGAAATGTTTACGATTGCGT-------GCGTATGTGTGTAAGTGA---------------------------TG------------------------ACAG-TAGCGCA-----A--------------------------------GTTTTGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:49 AM