ID:

dsi_11130

 Coordinate:

2r:12751069-12751218 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.3 -21.8 -21.8

Flybase annnotation

Antisense to three_prime_UTR [2r_12751249_12751621_-]; Antisense to exon [2r_12751249_12752844_-]; three_prime_UTR [2r_12750304_12751441_+]; exon [2r_12750081_12751441_+]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+

Sense Strand Reads

##########################################################################################################################################################################################################################################################
TTTTACTATTCTATACTATTTTACAATATTCCCCGCTATGCCAATAAATTTCAGAGATATCTTCCTAGCGGCTCCCACTAGTTGAGTAACGGGTATATGATAGTCGAGCAAATCGACTATAGCGTTCTCTTGTTTTATGCATTGTTTTTGTTGAATCAACTTTACAACGAGTGCGACTAAATATTTTACAATAACGTTAGGATTCACCCGATTGGAAAAAGAAACCCGAGGAATTATTGAAGGATTACGT
**************************************************************************************.((((((...(((((((((((.....))))))))..)))...)))))).......((((.(((((((((......)).))))))).)))).....................***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 O001
Testis
 GSM343915
embryo
 M053
female body
 O002
Head
...................................................................................................................................................................................................................TTGGAAAAAGAAACCCGAGGAATTAT............. 26 0 1 3.00 3 0 1 0 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................TGCGACTAAATATTTTACAATAACGT..................................................... 26 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ATTTTACAATAACGTTAGGAT............................................... 21 0 1 3.00 3 1 0 0 0 0 0 0 0 0 2 0 0 0 0
.......................................................................................................................................................................................TTTTACAATAACGTTAGGATTCACCCGA....................................... 28 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................TAACGGGTATATGATAGTCGAGCAAATC........................................................................................................................................ 28 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................AATATTTTACAATAACGTTAGGATT.............................................. 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TGAGTAACGGGTATATGATAGTCGAG.............................................................................................................................................. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GCAAATCGACTATAGCGTTCTCTTG...................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGGAAAAAGAAACCCGAGGAA................. 21 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TGCATTGTTTTTGTTGAATCA............................................................................................ 21 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 1 0 0 0
.....................................................GAGATATCTTCCTAGCGGCTC................................................................................................................................................................................ 21 0 1 2.00 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................TTACAATAACGTTAGGATTCAACCGA....................................... 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTTTACAATAACGTTAGGATTCACCC......................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................ATGCATTGTTTTTGTTGAATC............................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................TTGGAAAAAGAAACCCGAGGA.................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AACGTTAGGATTCACCCGATTGG................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................TTTTATGCATTGTTTTTGTTGAATC............................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................TGATAGTCGAGCAAATCGACTATAGCGT............................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TATTTTACAATAACGTTAGGATTCACC.......................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTGGAAAAAGAAATCCGAGGAATTAT............. 26 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................TATATGATAGTCGAGCAAATC........................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TTTACAACGAGTGCGACTAAATATTT................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AACGTTAGGATTCACCCGATT..................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................TGTTTTATGCATTGTTTTTGTTGAA............................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ACGGGTATATGATAGTCGAGCAAA.......................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTTACAATAACGTTAGGATTCACCCGAT...................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ATTTTACAATAACGTTAGGATTCACC.......................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................TAGCGGCTCCCACTAGTTGAGTAACGGG............................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTACAATAACGTTAGGATTCACCCGA....................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ATAGCGTTCTCTTGTTTTATG............................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GGAATTATTGAAGGATTAC.. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TTTATGCATTGTTTTTGTTGAAT.............................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................AGAGATATCTTCCTAGCGGCT................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CGAGCAAATCGACTATAGCGTTCTCTTGTT.................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GTCGAGCAAATCGACTATAGCGTT............................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................TATATGATAGTCGAGCAAGTC........................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAAAAGAAACCCGAGGAATTATT............ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TACAACGAGTGCGACTAAATATTTTACAA........................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................AATCGACTATAGCGTTCTCT........................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................CAACTTTACAACGAGTGCG........................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................GGGTATATGATAGTCGAGCAAAT......................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTGAATCAACTTTACAACGAGT.............................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................TACAATAACGTTAGGATTCACCCGATT..................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATCAACTTTACAACGAGT.............................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................TTTCAGAGATATCTTCCTAGCGGC.................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................TCGACTATAGCGTTCTCTTGTTTTATGC.............................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AAAGAAACCCGAGGAATTATT............ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TATGCATTGTTTTTGTTGAATCAACT......................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........TCTATACTATTTTACAATATTCCCCGCTA.................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ATTTTACAATAACGTTAGGATTCACCC......................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................TACAATAACGTTAGGATTCACCCGA....................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGATTCACCCGATTGGAAAAAGAAACC........................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ACAATAACGTTAGGATTCACCCGATT..................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGAAACCCGAGGAATTATTGAAGGAT..... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TAACGTTAGGATTCACCCGATTGGAA................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................CGGGTATATGATAGTCGAGCAAGTCGA...................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................AGGATTCACCCGATTGGAAAA............................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................TAAATTTCAGAGATATCTTCC......................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GTTGAATCAACTTTACAACGA................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TTACAACGAGTGCGACTAA...................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................TTCCCCGCTATGCCAACAAATTTAAGAGA................................................................................................................................................................................................. 29 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................GAGATATCTTCCTAGCGGC.................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................TTTATGCATTGTTTTTGTT.................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CGAGGAATTATTGAAGGATT.... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ACAATAACGTTAGGATTCACCCGA....................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................ATTTTACAATATTCCCCGCTAT................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTTTACAATAACGTTAGGATT.............................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GAATCAACTTTACAACGAGTGC............................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................ATATTTTACAATAACGTTAGG................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATATTTTACAATAACGTTAGGATT.............................................. 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................GGGTATATGATAGTCGAGCAAATC........................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GACTATAGCGTTCTCTTGTTTTATGC.............................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TAACGTTAGGATTCACCCGATT..................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................TGCATTGTTTTTGTTGAATCAACTT........................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................TATATGATAGTCGAGCAAATCG....................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................CACTAGTTGAGTAACGGGTATATGAT..................................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GGACTATAGCGTTCTCTTGTT.................................................................................................................... 21 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TCGAGCAAGTCGACTATAGCGA............................................................................................................................. 22 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................AACGGGTATATGATAGTCGAG.............................................................................................................................................. 21 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GACTATAGCGTTCTCTTG...................................................................................................................... 18 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TAACGGGTATATGATAGTCGA............................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GACTATAGCGTTCTCT........................................................................................................................ 16 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CCACTAGTTGAGTAACGGGTAT.......................................................................................................................................................... 22 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................TGAGTAACGGGTATATGATAGTC................................................................................................................................................. 23 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
TTTTACTAGTCTGTACTA........................................................................................................................................................................................................................................ 18 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................TGAGTAACGGGTATATGATA.................................................................................................................................................... 20 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GAAAATGAAACCCGGGGAAG................ 20 3 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CGAGGAACTGTTGAAGGATC.... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................TTTGTTGAATCAACTGAACC.................................................................................... 20 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AATGAACGGTACAACGAGT.............................................................................. 19 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ACGGGTATATGATAGT.................................................................................................................................................. 16 0 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TGAGTAACGGGTATA......................................................................................................................................................... 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------####################
AAAATGATAAGATATGATAAAATGTTATAAGGGGCGATACGGTTATTTAAAGTCTCTATAGAAGGATCGCCGAGGGTGATCAACTCATTGCCCATATACTATCAGCTCGTTTAGCTGATATCGCAAGAGAACAAAATACGTAACAAAAACAACTTAGTTGAAATGTTGCTCACGCTGATTTATAAAATGTTATTGCAATCCTAAGTGGGCTAACCTTTTTCTTTGGGCTCCTTAATAACTTCCTAATGCA
*****************************************************.((((((...(((((((((((.....))))))))..)))...)))))).......((((.(((((((((......)).))))))).)))).....................************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 M025
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
......................................................................................................................................................................................................TCCTAAGTGGGCTAACCTTTT............................... 21 0 1 6.00 6 0 0 2 2 0 0 0 0 2 0 0 0
......................................................................................................................TATCGCAAGAGAACAAAATAC............................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAAATGTTATTGCAATCCTAA.............................................. 21 0 1 2.00 2 0 0 0 0 0 1 0 0 1 0 0 0
..................................................................................................................................................................ATGTTGCTCACGCTGATTTA.................................................................... 20 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0
..................................CGATACGGTTATTTAAAGTCT................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 1 0
......................................ACGGTTATTTAAAGTCTCTAT............................................................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AGTGGGCTAACCTTTTTCTTTGG........................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................TATAAGGGGCGATACGGTTAT............................................................................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................ATGTTGCTCACGCTGATTTAT................................................................... 21 0 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0
..........................................................................................................................GCAAGAGAACAAAATACGTA............................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................ATACGGTTATTTAAAGTCTCT................................................................................................................................................................................................. 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................AGTGGGCTAACCTTTTTCTTT.......................... 21 0 1 2.00 2 0 0 0 0 0 1 0 1 0 0 0 0
.......................................................................................................................................................................GCTCACGCTGATTTATAAAAT.............................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTGCTCACGCTGATTTATAAA................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................GTTGAAATGTTGCTCACGCTG......................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................CCACGCTGATTTATAAAATGT............................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................AAGGGGCGATACGGTTATTTA......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................TAAGTGGGCTAACCTTTTTC............................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GCTCCTTAATAACTTCCTAAT... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................ATAGAAGGATCGCCGAGGGTG............................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................GCGATACGGTTATTTAAAGTC.................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................TCACGCTGATTTATAAAATGT............................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................TTAGCTGATATCGCAAGAGAAC...................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................CGAGGGTGATCAACTCATTGCC.............................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................GATATCGCAAGAGAACAAAAT................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTTCTTTGGGCTCCTTAATAA............ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................TACGTAACAAAAACAACTTAG............................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................CGCCGAGGGTGATCAACTCATTGCC.............................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................TACGGTTATTTAAAGTCTCTAT............................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................GGGCGATACGGTTATTTAAAG...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................TTAGCTGATATCGCAAGAGAA....................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................TATTTAAAGTCTCTATAGAA........................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCCTAAGTGGGCTAACCTTT................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAGTGGGCTAACCTTTTTCTT........................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TGATATCGCAAGAGAACAAAATAC............................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................ACGGTTATTTAAAGTCTCTATAGAA........................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GATATCGCAAGAGAACAAAA.................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................TTAAGGGGCGATACGGTTATTT.......................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CTGATATCGCAAGAGAACAAA................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AATGTTGCTCACGCTGATTTA.................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................ACGGTTATTTAAAGTCTCTATAGAAGGAT....................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................GGGCGATACGGTTGTTTAAAT...................................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................GATCAACTCATTGCCCATATA........................................................................................................................................................ 21 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................CGAGGGTGATCGACTCATTGCC.............................................................................................................................................................. 22 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................ATTGCCCATATACTATCAGCT............................................................................................................................................... 21 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................TAGAAAATGTCATTGCAATA.................................................. 20 3 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 2
...........................................................AGAAGGATCGTGTAGGGTGAT.......................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................CTCATTGCCCATATACTATCAGC................................................................................................................................................ 23 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
............................AAGGGGCGATACTGCTA............................................................................................................................................................................................................. 17 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0
..................AAAATGTCATAAGGG......................................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0
....................AATGTCATAAGGGGCA...................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................AAAAACGCCTTAGTTGA......................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:12751019-12751268 + dsi_11130 TTTTACTATTCTATACTATT--TTACAATATTCC------------------------CCGCTATGCCAATAAATTTCAGAGATATCTTCCTAGCGGCTCCCACTAGTTGAGTAACGGGTATATGATAGTCGAGCAAATCGACTATAGCGTTCT--CTTGTTTT---ATGCATTGTTTT-TGT-----T-GAAT-CAACTTTACAACGA-GTGCGACTAA---ATATTTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AAAAAGAAA------------------CCCGA---------GGAATTATTGAAG----GATT--ACGT
droSec2 scaffold_1:9580692-9580930 + ATAC------------TATT--TTACAATATTCC------------------------CCGCTATGCCAATAAATTTCAGAGATATCTTCCTAGCGGCTCCAACTAGTTGAGTAACGGGTATATGATAGTCGAGCAAATCGACTATAGCGTTCT--CTTGTTTT---ATGCATTGTTTT-TGT-----T-GAAT-CAACTTTACAACGA-GTGCGACTAA---ATATTTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGATTGGA--------------------------------------------------------AAAAAGAAA------------------CCCGA---------GGAATTATTGAAG----GATT--ACGT
dm3 chr2R:12081332-12081581 + TTTTACCATTCTATACTATT--TTACAATATTCG------------------------CCGTTATGCCAACAAATTTTAGAGATATCTTCCTGCCACCTCCCACTAGTTGAGTAACGGGTATATGATAGTCGAGCAAATCGACTATAGCGTTCT--CTTGTTTT---ATGCATTGTTTT-TGT-----T-GAAT-CAACTTTACAACGA-GTGCGACTAA---ATATTTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AAAAAAAAA------------------CCAGA---------GGAATTATTGAAG----GATT--ACGT
droEre2 scaffold_4845:13776666-13776886 - TTTTACTT--------------------------------GCCTA-------TTTCTACCGC--TG-CAACAAATTTAGGAAATATCTTCCT-------------AGCTGAGTAACGGGTATGTGATAGTCGAGCAAATCGACTATAGCGTTCT--CTTGTTTTATTACGCATTGTTTT-TGT-----T-AAAT-CAACTTTA---CGA-GTGCAACTAA---ATATTTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGATTGA---------------------------------------------------------AAAAAGAAA------------------CCAGA---------GGAATTATTGAAG----GATT--ACGT
droYak3 2R:16901316-16901537 - TTTC------------TA----------------------------------------CCGCCATGCCAAAAAATGTTGGAAATATCGTCCTGGCAC--CCCATTATCTATGTAACGGGTATGTGATAGTCGAGTAAATCGACTATAGCGTTCT--CTTGTTTT---ATGCATTGTTTT-TGT-----T-GAAT-CAACTTTACAACGA-GTGCAACTAA---ATATTTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AATATGAAA------------------CCAGA---------GGAACTATTGAAG----CATT--ACGT
droEug1 scf7180000409672:991055-991172 + TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCATTGTTTT-TGT-----T-GAAT-CAACTTTACAACGA-GTGCAACTAA---ATATTTTAC---AATA-----ACGT--TAAGA---TTCGC-CCAATTGG---------------------------------------------------------AAAAAGAAA------------------CCAGA---------GGAATTATTGAAT----GATT--ACGT
droBia1 scf7180000302288:23246-23454 - TTTTAC--------------------AATATCCCTTTGCTGCT-------------------------TATATATCTCC-----A-TTTCCTTTTGGCACTCTTAAGCTGAGTAACGGGTATCTGATAGTCGAAGCACTCGACTATAGCGTTCTTCCTTGCTTT---TTTCATTTT------------T-GTAT-G------------------------------------------------A-TC--TTTGA---TTTTG-TTTACTGA-------------ATTTTTTTTGAGACTAACAATAAGTT---------------------TACGAGTCTTAACATTA-----A----AATTTAACTA-------ACAGAA---------------
droTak1 scf7180000413951:12093-12327 + TTGTGTTCATCAATACCATTCGTTAAAATGTTA-----CGGCG------------------G----ATTAAAGTTTTTATCCCCATCTCCGTCGCA-CTCCCTTTAGCTGTGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGTTCTCTCTTGTTTT---ACACTTAATTTT---------T-AGCT-AAACTTTAGGGCCA-TTGCGC----ACC--------------------------------------GC-CTA----AACGATTATATAAAATTTTTC--G-------------GTTTTCGCATAAATTTATTGGACACAGAAA------------------CC---------------------------------------
droEle1 scf7180000491107:1101509-1101627 + TTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAATTGTTTTCTGT-----T-GAAT-CAACTTTACAACGA-GTGCAACAAC---ATATTTTAC---AATA-----ACGT--TAAGA---TGCGT-ACAATTGG---------------------------------------------------------AAAAAGAAA------------------CCAGA---------GAAATTATTGAAT----GATT--ACGT
droRho1 scf7180000776752:138-324 + ATCT------------------------------------------------------------------------------------CCCTCGCA-CTCCCTTTACCTGAGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGTTCTCTCTTGTTTT------------TTTCTGT-----A-AATTCCAACTCAACGAAGT-ATGCCACTCC---AACA--TACGACAACT-----ATTTCCCAGGG---TT----TTGATTAAA--------------------------------------------------------ATACCGAAA------------------ATCGA---------GGTGTTTTCTTCG----GATT--TTGG
droFic1 scf7180000453948:1328524-1328638 + TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAATTGTTTTCTGT-----T-GAAT-TAACTT---AACGA-GTGCAACTAA---ATATTTTAC---AATA-----ACGT--TAAGA---TACAC-CCGATTGG---------------------------------------------------------AAA-AGAAA------------------TCAGA---------GGAATTATTGAAT----GATT--ACGT
droKik1 scf7180000302682:1292268-1292392 - TTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------AAT---AAGCATTGTTTTCTGT-----T-GAAT-CAACTTTACAACGA-GTGCAACCAC---ATATTTTAC--ACACATAGTAACGT--TAAGG---TGCGCCCCAATTGG---------------------------------------------------------AACAAGA----------------------------------AGAAATATTGAATGA-TGATT--ACGT
droAna3 scaffold_13266:4194903-4195002 - TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCATTGTTTTCTGT-----T-GAAT-CAACTTTACAACGAGGTGCGC----ACC-----------------------------------GCCCC-CCAATTGG---------------------------------------------------------AAATGGAAT------------------CCGGA---------GGAA-TATTGAATGATTGATT--ACGT
droBip1 scf7180000395751:11327-11434 - TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCATTGTTTTCTGT-----T-GAAT-CAACTTCACAACGA-GGAGGCCTAG---ACAT------------------CGT--TGGGG---GGCGC-CCGATTGG---------------------------------------------------------AAATGAAAT------------------CCTGA---------GGAA-TATTGAAA----GATT--ACGT
dp5 3:4443274-4443441 + GTTTAT--------------------AATAATTGCTAATTGATTGCACACAT--------------------------------------------------------------------------------------CCTACTATA-------------TTGC---ATTCATTGTTTTCCGT-----TAGAAT-CAGCTTCACATCGA-GTGC-ATGAA---ATGTTTTAC---CATAGCGTAACCA--TAGGGTGTTGCGC-TTAATTGGC--------------------------------------------------------AAAAAGAGA------------------CCAGA---------G-AATTATTGAAT----GAGT--ACGT
droPer2 scaffold_2:4630981-4631148 + GTTTAT--------------------AATAATTGCTAATTGATTGCACACAT--------------------------------------------------------------------------------------CCTACTATA-------------TTGC---ATTCATTGTTTTCCGT-----TAGAAT-CAGCTTCACATCGA-GTGC-ATGAA---ATGTTTTAC---CATAGCGTAACCA--TAGGGTGTTGCGC-TTAATTGGC--------------------------------------------------------AAAAAGAGA------------------CCAGA---------G-AATTATTGAAT----GAGT--ACGT
droWil2 scf2_1100000004558:431506-431542 - GAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGA---------------------------------------------------------AAGTAAAGT------------------CAAAT---------GGTGTTA------------TT--TTTT
droVir3 scaffold_12875:4425829-4425947 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCATTGTTTT-TGTTTTGTT-GAA--------------------CAAAAAA---ATATTT-AC----ATA-----ATTT--AAGTT---TGCGC-TTAACTGAA--------------------------------------------------------AGAAAAGCG---ACAGATAATACGAAGTACGAGAAATCAAATGA------AAAT----GGTT--CTTT
droMoj3 scaffold_6496:13265210-13265210 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15112:1829455-1829565 - ATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTGTTTT-TGTTTTGTT-GA--------TCACAACAA-T------------ATA--T-AC----ATA-----A-TT--TAAGA---TTGCG-CTAACTGA---------------------------------------------------------AAAGAAAAGGCGAAAAACAA-----A----GAGAAAGCCA-------ACAAAAT----GGTTAATTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTTACTATTCTATACTATT--TTACAATATTCC------------------------CCGCTATGCCAATAAATTTCAGAGATATCTTCCTAGCGGCTCCCACTAGTTGAGTAACGGGTATATGATAGTCGAGCAAATCGACTATAGCGTTCT--CTTGTTTT---ATGCATTGTTTT-TGT-----T-GAAT-CAACTTTACAACGA-GTGCGACTAA---ATATTTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AAAAAGAAA------------------CCCGA---------GGAATTATTGAAG----GATT--ACGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................TTGG---------------------------------------------------------AAAAAGAAA------------------CCCGA---------GGAATTAT...................2613.00300000000001011000
...................................................................................................................................................................................................................TGCGACTAA---ATATTTTAC---AATA-----ACGT--...................................................................................................................................................2613.00300000001002000000
.................................................................................................................................................................................................................................ATTTTAC---AATA-----ACGT--TAGGA---T..........................................................................................................................................2113.00320000001000000000
..................................................................................................................................................................................................................................TTTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGA.................................................................................................................................2812.00200000001000010000
................................................................................................................TAACGGGTATATGATAGTCGAGCAAATC.................................................................................................................................................................................................................................................................2812.00200000001010000000
...........................................................................................................................................................................................................................A---ATATTTTAC---AATA-----ACGT--TAGGA---TT.........................................................................................................................................2512.00202000000000000000
............................................................................................................TGAGTAACGGGTATATGATAGTCGAG.......................................................................................................................................................................................................................................................................2612.00200000000002000000
.....................................................................................................................................GCAAATCGACTATAGCGTTCT--CTTG.............................................................................................................................................................................................................................................2512.00200200000000000000
.............................................................................................................................................................................................................................................................................TGG---------------------------------------------------------AAAAAGAAA------------------CCCGA---------GGAA.......................2112.00200000011000000000
........................................................................................................................................................................TGCATTGTTTT-TGT-----T-GAAT-CA........................................................................................................................................................................................................2112.00200001000010000000
...............................................................................GAGATATCTTCCTAGCGGCTC.........................................................................................................................................................................................................................................................................................................2112.00200000000010001000
..................................................................................................................................................................................................................................TTTTAC---AATA-----ACGT--TAGGA---TTCAC-CC...................................................................................................................................2611.00100000001000000000
.......................................................................................................................................................................ATGCATTGTTTT-TGT-----T-GAAT-C.........................................................................................................................................................................................................2111.00110000000000000000
............................................................................................................................................................................................................................................................................TTGG---------------------------------------------------------AAAAAGAAA------------------CCCGA---------GGA........................2111.00100000000000001000
..............................................................................................................................................................................................................................................A-----ACGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------....................................................................2311.00100100000000000000
................................................................................................................................................................TTTT---ATGCATTGTTTT-TGT-----T-GAAT-C.........................................................................................................................................................................................................2511.00100000000010000000
...........................................................................................................................TGATAGTCGAGCAAATCGACTATAGCGT......................................................................................................................................................................................................................................................2811.00100000000001000000
................................................................................................................................................................................................................................TATTTTAC---AATA-----ACGT--TAGGA---TTCAC-C....................................................................................................................................2711.00100000001000000000
.......................................................................................................................TATATGATAGTCGAGCAAATC.................................................................................................................................................................................................................................................................2111.00101000000000000000
.......................................................................................................................................................................................................TTTACAACGA-GTGCGACTAA---ATATTT........................................................................................................................................................................2611.00100000000001000000
..............................................................................................................................................................................................................................................A-----ACGT--TAGGA---TTCAC-CCGATT...............................................................................................................................2111.00100000000100000000
..............................................................................................................................................................TGTTTT---ATGCATTGTTTT-TGT-----T-GAA............................................................................................................................................................................................................2511.00100000001000000000
..................................................................................................................ACGGGTATATGATAGTCGAGCAAA...................................................................................................................................................................................................................................................................2411.00100000001000000000
...................................................................................................................................................................................................................................TTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGAT................................................................................................................................2811.00100000000100000000
.................................................................................................................................................................................................................................ATTTTAC---AATA-----ACGT--TAGGA---TTCAC-C....................................................................................................................................2611.00100000000000100000
...........................................................................................TAGCGGCTCCCACTAGTTGAGTAACGGG......................................................................................................................................................................................................................................................................................2811.00100000001000000000
....................................................................................................................................................................................................................................TTAC---AATA-----ACGT--TAGGA---TTCAC-CCGA.................................................................................................................................2611.00100000001000000000
................................................................................................................................................ATAGCGTTCT--CTTGTTTT---ATG...................................................................................................................................................................................................................................2111.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................GGAATTATTGAAG----GATT--AC..1911.00100000000000001000
.................................................................................................................................................................TTT---ATGCATTGTTTT-TGT-----T-GAAT-..........................................................................................................................................................................................................2311.00101000000000000000
..............................................................................AGAGATATCTTCCTAGCGGCT..........................................................................................................................................................................................................................................................................................................2111.00100000001000000000
..................................................................................................................................CGAGCAAATCGACTATAGCGTTCT--CTTGTT...........................................................................................................................................................................................................................................3011.00100000001000000000
................................................................................................................................GTCGAGCAAATCGACTATAGCGTT.....................................................................................................................................................................................................................................................2411.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................AAAAAGAAA------------------CCCGA---------GGAATTATT..................2311.00100000000001000000
.........................................................................................................................................................................................................TACAACGA-GTGCGACTAA---ATATTTTAC---AA................................................................................................................................................................2911.00100000000000001000
........................................................................................................................................AATCGACTATAGCGTTCT--CT...............................................................................................................................................................................................................................................2011.00100000100000000000
...................................................................................................................................................................................................CAACTTTACAACGA-GTGCG......................................................................................................................................................................................1911.00100001000000000000
....................................................................................................................GGGTATATGATAGTCGAGCAAAT..................................................................................................................................................................................................................................................................2311.00100000001000000000
......................................................................................................................................................................................T-----T-GAAT-CAACTTTACAACGA-GT.........................................................................................................................................................................................2211.00110000000000000000
.....................................................................................................................................................................................................................................TAC---AATA-----ACGT--TAGGA---TTCAC-CCGATT...............................................................................................................................2711.00100000001000000000
................................................................................................................................................................................................AT-CAACTTTACAACGA-GT.........................................................................................................................................................................................1811.00100001000000000000
..........................................................................TTTCAGAGATATCTTCCTAGCGGC...........................................................................................................................................................................................................................................................................................................2411.00100100000000000000
..........................................................................................................................................TCGACTATAGCGTTCT--CTTGTTTT---ATGC..................................................................................................................................................................................................................................2811.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................AAAGAAA------------------CCCGA---------GGAATTATT..................2111.00100000000000001000
...................................................................................................................................................................T---ATGCATTGTTTT-TGT-----T-GAAT-CAACT.....................................................................................................................................................................................................2611.00100000000100000000
.........TCTATACTATT--TTACAATATTCC------------------------CCGCTA.............................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
.................................................................................................................................................................................................................................ATTTTAC---AATA-----ACGT--TAGGA---TTCAC-CC...................................................................................................................................2711.00100100000000000000
.....................................................................................................................................................................................................................................TAC---AATA-----ACGT--TAGGA---TTCAC-CCGA.................................................................................................................................2511.00100000001000000000
............................................................................................................................................................................................................................................................GGA---TTCAC-CCGATTGG---------------------------------------------------------AAAAAGAAA------------------CC.......................................2711.00100000010000000000
......................................................................................................................................................................................................................................AC---AATA-----ACGT--TAGGA---TTCAC-CCGATT...............................................................................................................................2611.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................AGAAA------------------CCCGA---------GGAATTATTGAAG----GAT.......2611.00100000001000000000
.............................................................................................................................................................................................................................................TA-----ACGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AA..................................................................2611.00100000000100000000
...........................................................................................................................................................................................................................................................AGGA---TTCAC-CCGATTGG---------------------------------------------------------AAAA................................................................2111.00101000000000000000
......................................................................TAAATTTCAGAGATATCTTCC..................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.....................................................................................................................................................................................GT-----T-GAAT-CAACTTTACAACGA-...........................................................................................................................................................................................2111.00100000010000000000
........................................................................................................................................................................................................TTACAACGA-GTGCGACTAA---..............................................................................................................................................................................1911.00101000000000000000
...............................................................................GAGATATCTTCCTAGCGGC...........................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.................................................................................................................................................................TTT---ATGCATTGTTTT-TGT-----T-...............................................................................................................................................................................................................1911.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................CGA---------GGAATTATTGAAG----GATT--....2011.00100000001000000000
......................................................................................................................................................................................................................................AC---AATA-----ACGT--TAGGA---TTCAC-CCGA.................................................................................................................................2411.00100000000010000000
.................ATT--TTACAATATTCC------------------------CCGCTAT............................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
..................................................................................................................................................................................................................................TTTTAC---AATA-----ACGT--TAGGA---TT.........................................................................................................................................2111.00101000000000000000
..............................................................................................................................................................................................GAAT-CAACTTTACAACGA-GTGC.......................................................................................................................................................................................2211.00100001000000000000
...............................................................................................................................................................................................................................ATATTTTAC---AATA-----ACGT--TAGG...............................................................................................................................................2111.00100000010000000000
...............................................................................................................................................................................................................................ATATTTTAC---AATA-----ACGT--TAGGA---TT.........................................................................................................................................2411.00100100000000000000
....................................................................................................................GGGTATATGATAGTCGAGCAAATC.................................................................................................................................................................................................................................................................2411.00100000001000000000
............................................................................................................................................GACTATAGCGTTCT--CTTGTTTT---ATGC..................................................................................................................................................................................................................................2611.00100000000001000000
.............................................................................................................................................................................................................................................TA-----ACGT--TAGGA---TTCAC-CCGATT...............................................................................................................................2211.00100000000100000000
........................................................................................................................................................................TGCATTGTTTT-TGT-----T-GAAT-CAACTT....................................................................................................................................................................................................2511.00100000000100000000
.......................................................................................................................TATATGATAGTCGAGCAAATCG................................................................................................................................................................................................................................................................2211.00100001000000000000
.....................................................................................................CACTAGTTGAGTAACGGGTATATGAT..............................................................................................................................................................................................................................................................................2620.50100000000001000000
.................................................................................................................AACGGGTATATGATAGTCGAG.......................................................................................................................................................................................................................................................................2130.33100000000000001000
............................................................................................................................................GACTATAGCGTTCT--CTTG.............................................................................................................................................................................................................................................1830.33100000000001000000
................................................................................................................TAACGGGTATATGATAGTCGA........................................................................................................................................................................................................................................................................2130.33100000001000000000
............................................................................................................................................GACTATAGCGTTCT--CT...............................................................................................................................................................................................................................................16200.25500000000005000000
....................................................................................................CCACTAGTTGAGTAACGGGTAT...................................................................................................................................................................................................................................................................................2250.20100000000000001000
............................................................................................................TGAGTAACGGGTATATGATAGTC..........................................................................................................................................................................................................................................................................2360.17100000000001000000
............................................................................................................TGAGTAACGGGTATATGATA.............................................................................................................................................................................................................................................................................2070.14100000000001000000
..................................................................................................................ACGGGTATATGATAGT...........................................................................................................................................................................................................................................................................16180.06100000000001000000
............................................................................................................TGAGTAACGGGTATA..................................................................................................................................................................................................................................................................................15200.05100000000001000000
droSec2
ATAC------------TATT--TTACAATATTCC------------------------CCGCTATGCCAATAAATTTCAGAGATATCTTCCTAGCGGCTCCAACTAGTTGAGTAACGGGTATATGATAGTCGAGCAAATCGACTATAGCGTTCT--CTTGTTTT---ATGCATTGTTTT-TGT-----T-GAAT-CAACTTTACAACGA-GTGCGACTAA---ATATTTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGATTGGA--------------------------------------------------------AAAAAGAAA------------------CCCGA---------GGAATTATTGAAG----GATT--ACGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................CAACTTTACAACGA-GTGC.......................................................................................................................................................................................1812.0020020
.........................................................................................................AGTTGAGTAACGGGTATATGATAGTC..........................................................................................................................................................................................................................................................................2612.0020011
.....................................................................................................AACTAGTTGAGTAACGGGTATATGATA.............................................................................................................................................................................................................................................................................2711.0010100
............................................................................................................................................................................................T-GAAT-CAACTTTACAACGA-GTGCGACT...................................................................................................................................................................................2711.0010010
....................................................................................................................................................................................................................................................ACGT--TAGGA---TTCAC-CCGATTG..............................................................................................................................2111.0011000
.......................................................................................................................................................TCT--CTTGTTTT---ATGCATTGTT............................................................................................................................................................................................................................2111.0010010
.........................................................................................................AGTTGAGTAACGGGTATATGATAGTCG.........................................................................................................................................................................................................................................................................2711.0010010
...................................................................................................................................GAGCAAATCGACTATAGCGTTCT--CTTG.............................................................................................................................................................................................................................................2711.0010010
....................................................................................................................................................................................................................................................................CAC-CCGATTGGA--------------------------------------------------------AAAAAGAAA------------------CCCGA---------G..........................2711.0010010
...............................................................................................................................................................................................................................................................................................................................................AAA------------------CCCGA---------GGAATTATTGAAG----GA........2311.0010010
...........................................................................................................TTGAGTAACGGGTATATGATAGT...........................................................................................................................................................................................................................................................................2311.0010010
.......................................................................................................................................................................................................................................................T--TAGGA---TTCAC-CCGATTG..............................................................................................................................1811.0010010
...................................................................................................................................................................................................................................................................TCAC-CCGATTGGA--------------------------------------------------------AAAAAGAAA------------------CCCGA---------...........................2711.0011000
...............................................................................................................................................................GTTTT---ATGCATTGTTTT-TGT-----T-GAAT-C.........................................................................................................................................................................................................2611.0010010
................................................................................................................................................ATAGCGTTCT--CTTGTTTT---ATGC..................................................................................................................................................................................................................................2211.0010010
................................................................................................................................................................................................................................................................................................................................................AA------------------CCCGA---------GGAATTATTGAAG----..........2011.0010010
...............................................................................................................................................................................................AAT-CAACTTTACAACGA-GTGCGACT...................................................................................................................................................................................2511.0010010
................................................................................................................................................................................................AT-CAACTTTACAACGA-GTGCGACT...................................................................................................................................................................................2411.0010010
......................................................................................................................GTATATGATAGTCGAGCAAATCGACT.............................................................................................................................................................................................................................................................2611.0010010
..............................................................................................................................................................................................................................................................................................................................................GAAA------------------CCCGA---------GGAATTATTGAAG----..........2211.0010010
............................................................................TCAGAGATATCTTCCTAGCGG............................................................................................................................................................................................................................................................................................................2111.0010100
dm3
TTTTACCATTCTATACTATT--TTACAATATTCG------------------------CCGTTATGCCAACAAATTTTAGAGATATCTTCCTGCCACCTCCCACTAGTTGAGTAACGGGTATATGATAGTCGAGCAAATCGACTATAGCGTTCT--CTTGTTTT---ATGCATTGTTTT-TGT-----T-GAAT-CAACTTTACAACGA-GTGCGACTAA---ATATTTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AAAAAAAAA------------------CCAGA---------GGAATTATTGAAG----GATT--ACGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.......................................................................................................................................................................................................TTTACAACGA-GTGCGACTAA---ATATTT........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AGA---------GGAATTATTGAAG----GATT--A...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GACTATAGCGTTCT--CTTGTTTT---A.....................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGAT................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TTGG---------------------------------------------------------AAAAAAAAA------------------CCAGA---------GGA........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TA-----ACGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------C...................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAC-CCGATTGG---------------------------------------------------------AAAAAAAAA------------------CCAGA---------...........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AAA.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................ATATCTTCCTGCCACCTCCCT......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TATTTTAC---AATA-----ACGT--TAGGA---TTCAC-C....................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................CTAA---ATATTTTAC---AATA-----ACGT--TAGGA---T..........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TCCTGCCACCTCCCACTAGTTGAG.............................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AAAAAAAA------------------CCAGA---------GGAAT......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TCGACTATAGCGTTCT--CTTGTTTT---AT....................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................AACGA-GTGCGACTAA---ATATTTT.......................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................CAACTTTACAACGA-GTGCGACTAA---A.............................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................TTTAGAGATATCTTCCTGCCACC...........................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................CGAGCAAATCGACTATAGCGTTCT--C................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ACTATT--TTACAATATTCG------------------------CCGTTATG...........................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AATA-----ACGT--TAGGA---TTCAC-CC...................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................GT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------A...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TA-----ACGT--TAGGA---TTCAC-CCGAT................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................CACCTCCCACTAGTTGAGTAAC.........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TTGTTTT---ATGCATTGTTTT-TGT-----T-GAAA-..........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................ATCGACTATAGCGTTCT--CTTGTTTT---AT....................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................ACCTCCCACTAGTTGAGTAACGGG......................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TATAGCGTTCT--CTTGTTTT---ATGCATTGT.............................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TTTACAACGA-GTGCGACTAA---AT............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................AACGA-GTGCGACTAA---ATA...........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................CAGA---------GGAATTATTGAAG----GATT--ACGT2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................TCAC-CCGATTGG---------------------------------------------------------AAAAAAAAA------------------CCAGA---------GG.........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................A---ATATTTTAC---AATA-----ACGT--TAGG...............................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................ATATTTTAC---AATA-----ACGT--TAGG...............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................CTGCCACCTCCCACTAGTTGAGTAACG........................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................TACAATATTCG------------------------CCGTTATGC..........................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................GAAT-CAACTTTACAACGA-GTGCGACTAA---A.............................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AAAAAG..............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TAC---AATA-----ACGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AAAAA...............................................................3411.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ATTATTGAAG----GATT--ACGT1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TGAGTAACGGGTATATGATAGTCGA........................................................................................................................................................................................................................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................TATATGATAGTCGAGCAAATCGACTA............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GACTATAGCGTTCT--CTTGTTTT---ATGCAT................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TAA---ATATTTTAC---AATA-----ACGT--TAGG...............................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TTTT---ATGCATTGTTTT-TGT-----T-GAAT-CAACTT....................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................C-CCGATTGG---------------------------------------------------------AAAAAAAAA------------------CCAGA---------GGATC......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TCAC-CCGATTGG---------------------------------------------------------AAAAAAAAA------------------CCAGA---------G..........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TAACGGGTATATGATAGTCGAGCAAAA..................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................GTTTT-TGT-----T-GAAT-CAACTTTACAACGA-G..........................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................T-CAACTTTACAACGA-GTGCGACTAA---A.............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TTTACAACGA-GTGCGACTA..................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................GAAT-CAACTTTACAACGA-GTG........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................ACGA-GTGCGACTAA---ATATTTTAC---A.................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTTTACTT--------------------------------GCCTA-------TTTCTACCGC--TG-CAACAAATTTAGGAAATATCTTCCT-------------AGCTGAGTAACGGGTATGTGATAGTCGAGCAAATCGACTATAGCGTTCT--CTTGTTTTATTACGCATTGTTTT-TGT-----T-AAAT-CAACTTTA---CGA-GTGCAACTAA---ATATTTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGATTGA---------------------------------------------------------AAAAAGAAA------------------CCAGA---------GGAATTATTGAAG----GATT--ACGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................T-------------AGCTGAGTAACGGGTATGTGAT..............................................................................................................................................................................................................................................................................2356.003000000030
.........................................................................................................................TGTGATAGTCGAGCAAATCGA...............................................................................................................................................................................................................................................................2111.0010000010
..............................................................................................................................................................................GTTTT-TGT-----T-AAAT-CAACTTTA---CGA-GTGC.......................................................................................................................................................................................2811.0010100000
........................................................................................................................ATGTGATAGTCGAGCAAATCGA...............................................................................................................................................................................................................................................................2211.0010000010
........................................................................................TCCT-------------AGCTGAGTAACGGGT.....................................................................................................................................................................................................................................................................................1911.0011000000
..............................................................................................................................................................................................................................................A-----ACGT--TAGGA---TTCAC-CCGATTGA---------------------------------------------------------....................................................................2311.0010001000
.............................................................................................................................................ACTATAGCGTTCT--CTTGTTTTATTACGC..................................................................................................................................................................................................................................2811.0010000100
.................................................................G-CAACAAATTTAGGAAATAT.......................................................................................................................................................................................................................................................................................................................2011.0010000010
................................................................................................................................GTCGAGCAAATCGACTATAGCGTT.....................................................................................................................................................................................................................................................2411.0011000000
.........................................................................................................................TGTGATAGTCGAGCAAATCGACT.............................................................................................................................................................................................................................................................2311.0010000010
.....................................................................................................................................................................................................................................................CGT--TAGGA---TTCAC-CCGATTGA---------------------------------------------------------....................................................................2111.0010001000
.....................................................................................................................................................................................................................................TAC---AATA-----ACGT--TAGGA---TTCAC-CCGAT................................................................................................................................2611.0011000000
..........................................................................................................................................................................................................................................................................................................................................AAAAGAAA------------------CCAGA---------GGAATTATTGAAG----GA........2811.0010000100
...........................................................CGC--TG-CAACAAATTTAGGA............................................................................................................................................................................................................................................................................................................................1911.0010000100
............................................................................................................TGAGTAACGGGTATGTGATAGTCGAGC......................................................................................................................................................................................................................................................................2711.0010000100
............................................................................................................................................................................................................................................ATA-----ACGT--TAGGA---TTCAC-CC...................................................................................................................................1911.0010001000
...............................................................................................................................................................................................AAT-CAACTTTA---CGA-GTGCAACT...................................................................................................................................................................................2211.0010000010
.................................................................................AATATCTTCCT-------------AGCTGAGT............................................................................................................................................................................................................................................................................................1911.0010000010
..................................................................................................................................CGAGCAAATCGACTATAGCGTTCT--CT...............................................................................................................................................................................................................................................2611.0010100000
...................................................................................................................................GAGCAAATCGACTATAGC........................................................................................................................................................................................................................................................1811.0011000000
...........................................................................TTAGGAAATATCTTCCT-------------AGCTGAGT............................................................................................................................................................................................................................................................................................2511.0010000001
............................................................................................................................................................................................................................................ATA-----ACGT--TAGGA---TTCAC-CCGATTGA---------------------------------------------------------....................................................................2511.0010000010
...............................................................................................................................................................................................................................................................................................................................................AAA------------------CCAGA---------GGAATTATTGAAG----..........2111.0010000010
..........................................................................................................................................................................................................................AA---ATATTTTAC---AATA-----ACGT--TAGG...............................................................................................................................................2311.0011000000
..............................................................................................................................................................................................................................................................................GA---------------------------------------------------------AAAAAGAAA------------------CCAGA---------GGA........................1911.0011000000
......................................................................................................................................CAAATCGACTATAGCGTTC....................................................................................................................................................................................................................................................1911.0011000000
.......................................................................................................................................................................................................TTTA---CGA-GTGCAACTAA---AT............................................................................................................................................................................1911.0010100000
..............................................................................................................................................................................................AAAT-CAACTTTA---CGA-GTGCAA.....................................................................................................................................................................................2111.0010000100
..............................................................................................................................................................................................................................................................A---TTCAC-CCGATTGA---------------------------------------------------------AAAAAGA.............................................................2111.0010000010
.................................................................................................................AACGGGTATGTGATAGTCGAG.......................................................................................................................................................................................................................................................................2150.2011000000
droYak3
TTTC------------TA----------------------------------------CCGCCATGCCAAAAAATGTTGGAAATATCGTCCTGGCAC--CCCATTATCTATGTAACGGGTATGTGATAGTCGAGTAAATCGACTATAGCGTTCT--CTTGTTTT---ATGCATTGTTTT-TGT-----T-GAAT-CAACTTTACAACGA-GTGCAACTAA---ATATTTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AATATGAAA------------------CCAGA---------GGAACTATTGAAG----CATT--ACGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................A-----ACGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AAT.................................................................2614.00400000000004
...................................................................................................................................................................T---ATGCATTGTTTT-TGT-----T-GAAT-CAACTT....................................................................................................................................................................................................2712.00202000000000
..................................................................................................................................................................................................................................................................TTCAC-CCGATTGG---------------------------------------------------------AATATGAAA------------------CCAGA---------...........................2712.00200200000000
.............................................................................................................................................................................................................................................................................TGG---------------------------------------------------------AATATGAAA------------------CCAGA---------GGAACTATT..................2612.00200200000000
...................................................................................................................................................................................................................TGCAACTAA---ATATTTTAC---AATA-----ACGT--...................................................................................................................................................2612.00200200000000
...........................................................................................................................................................................................................................................................AGGA---TTCAC-CCGATTGG---------------------------------------------------------AAT.................................................................2012.00201000010000
...................................................................................................................................................................................................................................................................TCAC-CCGATTGG---------------------------------------------------------AATATGAAA------------------CCAGA---------GG.........................2812.00200200000000
................................................................................................................................................ATAGCGTTCT--CTTGTTTT---ATGCATT...............................................................................................................................................................................................................................2512.00201100000000
................................................................................................................................................................................................................................TATTTTAC---AATA-----ACGT--TAGGA---TTCAC-C....................................................................................................................................2712.00200200000000
.........................................................................................................................................................................................................................TAA---ATATTTTAC---AATA-----ACGT--TAGGA---T..........................................................................................................................................2612.00202000000000
...........................................................................................................................................CGACTATAGCGTTCT--CTTGTTTT---ATGCA.................................................................................................................................................................................................................................2811.00101000000000
.............................................................................................................................................................................................................................................TA-----ACGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AA..................................................................2611.00100100000000
............................................................................................................................................................................................T-GAAT-CAACTTTACAACGA-GT.........................................................................................................................................................................................2111.00101000000000
.......................................................................AAATGTTGGAAATATCGTCCTG................................................................................................................................................................................................................................................................................................................2211.00100000010000
...................................................................................................................................................................................................................................................................TCAC-CCGATTGG---------------------------------------------------------AATATGAAA------------------CCAGA---------...........................2611.00101000000000
.........................................................................................................................................ATCGACTATAGCGTTCT--CTTGTTT..........................................................................................................................................................................................................................................2411.00100100000000
................................................................................................................................GTCGAGTAAATCGACTATAGCGTTCT--C................................................................................................................................................................................................................................................2711.00100100000000
............................................................................................................................................................................................................................................ATA-----ACGT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------....................................................................2511.00100010000000
..............................................................................................................................................................................................................................................................A---TTCAC-CCGATTGG---------------------------------------------------------AATATGAAA------------------CCAGA---------GG.........................3011.00100000010000
........................................................................................................................ATGTGATAGTCGAGTAAATCGACT.............................................................................................................................................................................................................................................................2411.00100100000000
........................................................................................................................ATGTGATAGTCGAGTAAATCGA...............................................................................................................................................................................................................................................................2211.00100010000000
................................................................TGCCAAAAAATGTTGGAAATATC......................................................................................................................................................................................................................................................................................................................2311.00101000000000
........................................................................................................................................................CT--CTTGTTTT---ATGCATTGTTT...........................................................................................................................................................................................................................2111.00100100000000
...........................................................................................................................................................................................................................................................................ATTGG---------------------------------------------------------AATATGAAA------------------CCAGA---------GG.........................2111.00100100000000
....................................................................................................................................................................................................................................................................CAC-CCGATTGG---------------------------------------------------------AATATGAAA------------------CCA......................................2311.00100100000000
.................................................................GCCAAAAAATGTTGGAAATATCGTCCTG................................................................................................................................................................................................................................................................................................................2811.00100000010000
............................................................................................................................................................................................T-GAAT-CAACTTTACAACGA-GTGC.......................................................................................................................................................................................2311.00100100000000
..............................................................................................................................................................................................................................................A-----ACGT--TAGGA---TTCAC-CCGAT................................................................................................................................2011.00100100000000
....................................................................................................................GGGTATGTGATAGTCGAGTAAAT..................................................................................................................................................................................................................................................................2311.00101000000000
..................................................................................................................................................................................................................................TTTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGAT................................................................................................................................2911.00101000000000
......................................................................................................................................................................................................................................................GT--TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AATATGA.............................................................2711.00100000010000
................................................................................................................................................................................................AT-CAACTTTACAACGA-GTGCA......................................................................................................................................................................................2111.00100100000000
.........................................................................................................................................................................................................................................................................................................................................AATATGAAA------------------CCAGA---------GGAACTAT...................2211.00100100000000
...................................................................................................................................................................................................................................TTTAC---AATA-----ACGT--TAGGA---TTCAC-CCGAT................................................................................................................................2811.00101000000000
.........................................................................................................................................ATCGACTATAGCGTTCT--CTTGTTTT---A.....................................................................................................................................................................................................................................2611.00101000000000
................................................................................................................................................................................................................................................................................................................................................AA------------------CCAGA---------GGAACTATTGA................1811.00100100000000
.......................................................................................................................................................................................................TTTACAACGA-GTGCAACTAA---A.............................................................................................................................................................................2111.00100000010000
..............................................................................................................................................CTATAGCGTTCT--CTTGTTTT---ATGCATTG..............................................................................................................................................................................................................................2811.00101000000000
..........................................................................................................................................................................................................................................................................GATTGG---------------------------------------------------------AATATGAAA------------------CCAGA---------GGAACC.....................2611.00100100000000
....................................................................................ATCGTCCTGGCAC--CCCATTATCT................................................................................................................................................................................................................................................................................................2311.00101000000000
............................................................................................................................................................................................................................................................GGA---TTCAC-CCGATTGG---------------------------------------------------------AATATGAAA------------------CC.......................................2711.00100100000000
...........................................................................................................................................................................................................................................................AGGA---TTCAC-CCGATTGG---------------------------------------------------------AATATGA.............................................................2411.00101000000000
..........................................................................................................................................................................................................................................................TAGGA---TTCAC-CCGATTGG---------------------------------------------------------AATATGAAA------------------CC.......................................2911.00100100000000
...........................................................................................................................................................................................................................A---ATATTTTAC---AATA-----ACGT--TAGGA---TT.........................................................................................................................................2511.00100000010000
...........................................................................................................CTATGTAACGGGTATGTGATA.............................................................................................................................................................................................................................................................................2111.00100010000000
............................................................................................................................................................................................................................................................................TTGG---------------------------------------------------------AATATGAAA------------------CCAGA---------GGAACTATT..................2711.00100100000000
......................................................................................................................................................................................T-----T-GAAT-CAACTTTACAACGA-GT.........................................................................................................................................................................................2211.00101000000000
.................................................................................................................................................TAGCGTTCT--CTTGTTTT---ATGCATTGTT............................................................................................................................................................................................................................2711.00101000000000
...........................................................................................................CTATGTAACGGGTATGTGAT..............................................................................................................................................................................................................................................................................2011.00101000000000
.........................................................................................................................................ATCGACTATAGCGTTCT--CTTGTT...........................................................................................................................................................................................................................................2311.00100100000000
..................................................................................................................................................................................................................................TTTTAC---AATA-----ACGT--TAGGA---TT.........................................................................................................................................2111.00101000000000
............................................................................................................................................................................................................................................................................TTGG---------------------------------------------------------AATATGAAA------------------CCAGA---------GGAACTAT...................2611.00100100000000
..................................................................................................................................................................................................................................................................TTCAC-CCGATTGG---------------------------------------------------------AATATGAAA------------------CCAGA---------T..........................2811.00100100000000
..............................................................................................................................................CTATAGCGTTCT--CTTGTTTT---ATGT..................................................................................................................................................................................................................................2420.50100000010000
..........................................................................................................................................TCGACTATAGCGTTCT--CTTGTTTT---A.....................................................................................................................................................................................................................................2530.33101000000000
droEug1
TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCATTGTTTT-TGT-----T-GAAT-CAACTTTACAACGA-GTGCAACTAA---ATATTTTAC---AATA-----ACGT--TAAGA---TTCGC-CCAATTGG---------------------------------------------------------AAAAAGAAA------------------CCAGA---------GGAATTATTGAAT----GATT--ACGTSizeHit CountTotal NormTotal
No Reads
droBia1
TTTTAC--------------------AATATCCCTTTGCTGCT-------------------------TATATATCTCC-----A-TTTCCTTTTGGCACTCTTAAGCTGAGTAACGGGTATCTGATAGTCGAAGCACTCGACTATAGCGTTCTTCCTTGCTTT---TTTCATTTT------------T-GTAT-G------------------------------------------------A-TC--TTTGA---TTTTG-TTTACTGA-------------ATTTTTTTTGAGACTAACAATAAGTT---------------------TACGAGTCTTAACATTA-----A----AATTTAACTA-------ACAGAA---------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTGTGTTCATCAATACCATTCGTTAAAATGTTA-----CGGCG------------------G----ATTAAAGTTTTTATCCCCATCTCCGTCGCA-CTCCCTTTAGCTGTGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGTTCTCTCTTGTTTT---ACACTTAATTTT---------T-AGCT-AAACTTTAGGGCCA-TTGCGC----ACC--------------------------------------GC-CTA----AACGATTATATAAAATTTTTC--G-------------GTTTTCGCATAAATTTATTGGACACAGAAA------------------CC---------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAATTGTTTTCTGT-----T-GAAT-CAACTTTACAACGA-GTGCAACAAC---ATATTTTAC---AATA-----ACGT--TAAGA---TGCGT-ACAATTGG---------------------------------------------------------AAAAAGAAA------------------CCAGA---------GAAATTATTGAAT----GATT--ACGTSizeHit CountTotal NormTotal
No Reads
droRho1
ATCT------------------------------------------------------------------------------------CCCTCGCA-CTCCCTTTACCTGAGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGTTCTCTCTTGTTTT------------TTTCTGT-----A-AATTCCAACTCAACGAAGT-ATGCCACTCC---AACA--TACGACAACT-----ATTTCCCAGGG---TT----TTGATTAAA--------------------------------------------------------ATACCGAAA------------------ATCGA---------GGTGTTTTCTTCG----GATT--TTGGSizeHit CountTotal NormTotal
No Reads
droFic1
TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAATTGTTTTCTGT-----T-GAAT-TAACTT---AACGA-GTGCAACTAA---ATATTTTAC---AATA-----ACGT--TAAGA---TACAC-CCGATTGG---------------------------------------------------------AAA-AGAAA------------------TCAGA---------GGAATTATTGAAT----GATT--ACGTSizeHit CountTotal NormTotal
No Reads
droKik1
TTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------AAT---AAGCATTGTTTTCTGT-----T-GAAT-CAACTTTACAACGA-GTGCAACCAC---ATATTTTAC--ACACATAGTAACGT--TAAGG---TGCGCCCCAATTGG---------------------------------------------------------AACAAGA----------------------------------AGAAATATTGAATGA-TGATT--ACGTSizeHit CountTotal NormTotal
No Reads
droAna3
TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCATTGTTTTCTGT-----T-GAAT-CAACTTTACAACGAGGTGCGC----ACC-----------------------------------GCCCC-CCAATTGG---------------------------------------------------------AAATGGAAT------------------CCGGA---------GGAA-TATTGAATGATTGATT--ACGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................ACAACGAGGTGCGC----ACC-----------------------------------GCCC.......................................................................................................................................2113.003100002
............................................................................................................................................................................................................................................................................TTGG---------------------------------------------------------AAATGGAAT------------------CCGGA---------GG.........................2012.002100010
..............................................................................................................................................................................................................CGAGGTGCGC----ACC-----------------------------------GCCCC-CCA..................................................................................................................................2112.002200000
..TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCATTGTTTTCTGT-----T-GAAT-C.........................................................................................................................................................................................................2411.001000001
............................................................................................................................................................................................T-GAAT-CAACTTTACAACGAGG..........................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................GCATTGTTTTCTGT-----T-GAAT-CAACC.....................................................................................................................................................................................................2411.001010000
...........................................................................................................................................................................................................CAACGAGGTGCGC----ACC-----------------------------------GCCCC-.....................................................................................................................................2111.001000001
.............................................................................................................................................................................................................ACGAGGTGCGC----ACC-----------------------------------GCCCC-CCAA.................................................................................................................................2311.001000001
........................................................................................................................................................................TGCATTGTTTTCTGT-----T-GAAT-CA........................................................................................................................................................................................................2211.001000001
............................................................................................................................................................................................................AACGAGGTGCGC----ACC-----------------------------------GCCCC-CCA..................................................................................................................................2311.001000001
.............................................................................................................................................................................................................ACGAGGTGCGC----ACC-----------------------------------GCCCC-CCA..................................................................................................................................2211.001000001
.............................................................................................................................................................................................................................................................................TGG---------------------------------------------------------AAATGGAAT------------------CCGGA---------GG.........................1911.001000001
............................................................................................................................................................................................T-GAAT-CAACTTTACAACGAGGTG........................................................................................................................................................................................2311.001010000
.........................................................................................................................................................................................................................................................................................................................................AAATGGAAT------------------CCGGA---------GGAA-T.....................1911.001001000
...................................................................................................................................................................................................CAACTTTACAACGAGGTGCGC----ACC-----------------------------------GCC........................................................................................................................................2711.001010000
.........................................................................................................................................................................................................................................................................................................................................AAATGGAAT------------------CCGGA---------GGAA-TATTGAAT..............2611.001001000
...T-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCATTGTTTTCTGT-----T-GAAT-CA........................................................................................................................................................................................................2411.001000001
.........................................................................................................................................................................................................................................................................................................................................AAATGGAAT------------------CCGGA---------GGAA-TAT...................2111.001000010
.................................................................................................................................................................................TTCTGT-----T-GAAT-CAACTTTACAACGAGG..........................................................................................................................................................................................2711.001100000
...................................................................................................................................................................................CTGT-----T-GAAT-CAACTTTACAACGAGGT.........................................................................................................................................................................................2611.001010000
droBip1
TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCATTGTTTTCTGT-----T-GAAT-CAACTTCACAACGA-GGAGGCCTAG---ACAT------------------CGT--TGGGG---GGCGC-CCGATTGG---------------------------------------------------------AAATGAAAT------------------CCTGA---------GGAA-TATTGAAA----GATT--ACGTSizeHit CountTotal NormTotal
No Reads
dp5
GTTTAT--------------------AATAATTGCTAATTGATTGCACACAT--------------------------------------------------------------------------------------CCTACTATA-------------TTGC---ATTCATTGTTTTCCGT-----TAGAAT-CAGCTTCACATCGA-GTGC-ATGAA---ATGTTTTAC---CATAGCGTAACCA--TAGGGTGTTGCGC-TTAATTGGC--------------------------------------------------------AAAAAGAGA------------------CCAGA---------G-AATTATTGAAT----GAGT--ACGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................TAGGGTGTTGCGC-TTAATTGG.............................................................................................................................2116.0060400002000
.......................................................................................................................................................................................................................................................A--TAGGGTGTTGCGC-TTAATTG..............................................................................................................................2113.0030200001000
...................................TAATTGATTGCACACAT--------------------------------------------------------------------------------------CCTA...............................................................................................................................................................................................................................................................2113.0030300000000
.............................................................................................................................................................................TGTTTTCCGT-----TAGAAT-CAGCT.....................................................................................................................................................................................................2112.0020200000000
.....................................................................................................................................................................................................................................TAC---CATAGCGTAACCA--TAGGG..............................................................................................................................................2112.0020100001000
............................................................................................................................................................................................................ATCGA-GTGC-ATGAA---ATGTTTT.......................................................................................................................................................................2112.0020200000000
.............................................................................................................................................................................................AGAAT-CAGCTTCACATCGA-GT.........................................................................................................................................................................................2112.0020200000000
......................................................................................................................................................................................................................................................................................................................................................................AGA---------G-AATTATTGAAT----GAGT--AC..2112.0020000000200
.....................................................................................................................................................................................................................................TAC---CATAGCGTAACCA--TAGGGTGTTG.........................................................................................................................................2612.0020200000000
............................................................................................................................................................................................TAGAAT-CAGCTTCACATCGA-G..........................................................................................................................................................................................2112.0020200000000
.................................................................................................................................................................................................................................................GTAACCA--TAGGGTGTTGCG.......................................................................................................................................1912.0020200000000
.......................................................................................................................................................................................................................................................................................................................................................................GA---------G-AATTATTGAAT----GAGT--ACG.2112.0020000000020
.....T--------------------AATAATTGCTAATTGATTGC...............................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
................................................................................................................................................................................................................................................CGTAACCA--TAGGGTGTTGCG.......................................................................................................................................2012.0020200000000
......................................................................................................................................................................................................................................AC---CATAGCGTAACCA--TAGGG..............................................................................................................................................2012.0020200000000
.................................................................................................................................................................................TTCCGT-----TAGAAT-CAGCTTCAC.................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................TATA-------------TTGC---ATTCATTGTTTTCCGT-----.................................................................................................................................................................................................................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................AAGAGA------------------CCAGA---------G-AATTATTGAAT----GAGT--....2711.0010010000000
..........................AATAATTGCTAATTGATTGCACACAT--------------------------------------------------------------------------------------C..................................................................................................................................................................................................................................................................2711.0010010000000
..................................................................................................................................................................................TCCGT-----TAGAAT-CAGCTTCACATC..............................................................................................................................................................................................2311.0010010000000
.................................................................................................................................................................................................T-CAGCTTCACATCGA-GTGC-AT....................................................................................................................................................................................2111.0010000001000
................................................................................................................................................................................................................................................CGTAACCA--TAGGGTGTTGC........................................................................................................................................1911.0010000001000
................................................................................................................................................................................TTTCCGT-----TAGAAT-CAGCTTCACATCGA-...........................................................................................................................................................................................2711.0010010000000
...........................................................................................................................................................................ATTGTTTTCCGT-----TAGAAT-CAG.......................................................................................................................................................................................................2111.0010100000000
.............................................CACACAT--------------------------------------------------------------------------------------CCTACTATA-------------TTGC---......................................................................................................................................................................................................................................2011.0010100000000
...........................ATAATTGCTAATTGATTGCACACAT--------------------------------------------------------------------------------------CC.................................................................................................................................................................................................................................................................2711.0010010000000
..................................................................................................................................................................................................................................................................TGCGC-TTAATTGGC--------------------------------------------------------AAAAAGAGA------------------CC.......................................2511.0010001000000
...................................................................................................................................................................................................................................................AACCA--TAGGGTGTTGCGC-TTA..................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................GTGTTGCGC-TTAATTGGC--------------------------------------------------------A...................................................................1911.0010100000000
.......................................................................................................................................................................................................................................C---CATAGCGTAACCA--TAGGG..............................................................................................................................................1911.0010000001000
...........................................................................................................................................................................................................................................CATAGCGTAACCA--TAGGGTG............................................................................................................................................2011.0010100000000
............................................................................................................................................TACTATA-------------TTGC---ATTCATTGTT............................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................AAAAAGAGA------------------CCAGA---------G-AATTAT...................2111.0010000001000
...............................................................................................................................................................................................AAT-CAGCTTCACATCGA-GTGC-A.....................................................................................................................................................................................2211.0010010000000
........................................GATTGCACACAT--------------------------------------------------------------------------------------CCTACTATA-------------.............................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................GT-----TAGAAT-CAGCTTCACATCGA-GTGC-......................................................................................................................................................................................2611.0010010000000
................................................................................................................................................................................................................A-GTGC-ATGAA---ATGTTTTAC---C.................................................................................................................................................................2011.0010001000000
.....................................................................................................................................................................................GT-----TAGAAT-CAGCTTCACATCGA-...........................................................................................................................................................................................2211.0010000100000
.........................................ATTGCACACAT--------------------------------------------------------------------------------------CCTACTATA-------------T............................................................................................................................................................................................................................................2111.0010000010000
...........................................................................................................................................................................................................CATCGA-GTGC-ATGAA---ATGTTT........................................................................................................................................................................2111.0010100000000
...........................ATAATTGCTAATTGATTGCACACAT--------------------------------------------------------------------------------------C..................................................................................................................................................................................................................................................................2611.0010010000000
...................................................................................................................................................................C---ATTCATTGTTTTCCGT-----TAG..............................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................AATTGGC--------------------------------------------------------AAAAAGAGA------------------CCAGA---------...........................2111.0010000001000
..............................................................................................................................................................................GTTTTCCGT-----TAGAAT-CAGCTT....................................................................................................................................................................................................2111.0010100000000
...................................TAATTGATTGCACACAT--------------------------------------------------------------------------------------CC.................................................................................................................................................................................................................................................................1911.0010001000000
.......................................................................................................................................................................................................................ATGAA---ATGTTTTAC---CATAGCG...........................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................C---CATAGCGTAACCA--TAGGGTG............................................................................................................................................2111.0010000010000
....AT--------------------AATAATTGCTAATTGATTG................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................ATTGATTGCACACAT--------------------------------------------------------------------------------------CCTACT.............................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................C---ATTCATTGTTTTCCGT-----TAGAAT-C.........................................................................................................................................................................................................2411.0010010000000
......................................................................................................................................................................................T-----TAGAAT-CAGCTTCACATCGA-...........................................................................................................................................................................................2111.0010000000010
..................................................................................................................................................................................TCCGT-----TAGAAT-CAGCTTCACAA...............................................................................................................................................................................................2211.0010000000100
..............................................................................................................................................................................................GAAT-CAGCTTCACATCGA-GT.........................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................ATTCATTGTTTTCCGT-----TAGA.............................................................................................................................................................................................................2011.0010000001000
...................................................................................................................................................................................................................................TTTAC---CATAGCGTAACCA--TAGG...............................................................................................................................................2211.0010100000000
....................................................................................................................................................................................................................................TTAC---CATAGCGTAACCA--TAG................................................................................................................................................2011.0010000001000
....................................................................................................................................................................................................................GC-ATGAA---ATGTTTTAC---CATAG.............................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................GC-ATGAA---ATGTTTTAC---CATAGCGT..........................................................................................................................................................2411.0010000100000
...........................................................................................................................................CTACTATA-------------TTGC---ATTCATTGTC............................................................................................................................................................................................................................2211.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................A---------G-AATTATTGAAT----GAGT--ACGT2111.0010000000010
.................................................................................................................................................TA-------------TTGC---ATTCATTGTTTTCCG.......................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................C-TTAATTGGC--------------------------------------------------------AAAAAGAGA------------------CC.......................................2111.0010100000000
........................................................................................................................................................................TTCATTGTTTTCCGT-----TAGAAT-..........................................................................................................................................................................................................2111.0010000000010
...............................................................................................................................................................................................................................ATGTTTTAC---CATAGCGTAACC......................................................................................................................................................2111.0010001000000
.............................................................................................................................................................................................................................................................................................................................................AGAGA------------------CCAGA---------G-AATTATTGAA...............2111.0010000000010
...............................................................................................................................................................................TTTTCCGT-----TAGAAT-CAGCTTC...................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................GTGTTGCGC-TTAATTGGC--------------------------------------------------------AA..................................................................2011.0010100000000
..............................................................................................................................................CTATA-------------TTGC---ATTCATTGTTTT..........................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................AC---CATAGCGTAACCA--TAGGGT.............................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................TAGGGTGTTGCGC-TTAATTG..............................................................................................................................2011.0010100000000
............................................................................................................................................................................TTGTTTTCCGT-----TAGAAT-CAGC......................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................C---CATAGCGTAACCA--TAGGGTGC...........................................................................................................................................2211.0010100000000
..........................................................................................................................................................................CATTGTTTTCCGT-----TAGAAT-CA........................................................................................................................................................................................................2111.0010000000010
.............................................................................................................................................................................................................TCGA-GTGC-ATGAA---ATGTTTTAC---CA................................................................................................................................................................2411.0010100000000
droPer2
GTTTAT--------------------AATAATTGCTAATTGATTGCACACAT--------------------------------------------------------------------------------------CCTACTATA-------------TTGC---ATTCATTGTTTTCCGT-----TAGAAT-CAGCTTCACATCGA-GTGC-ATGAA---ATGTTTTAC---CATAGCGTAACCA--TAGGGTGTTGCGC-TTAATTGGC--------------------------------------------------------AAAAAGAGA------------------CCAGA---------G-AATTATTGAAT----GAGT--ACGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................A--TAGGGTGTTGCGC-TTAATTGGC--------------------------------------------------------....................................................................2313.003300000
......................................................................................................................................................................................................................................................CA--TAGGGTGTTGCGC-TTAATTGGC--------------------------------------------------------....................................................................2412.002200000
........................................................................................................................................................................................................................................................................TTAATTGGC--------------------------------------------------------AAAAAGAGA------------------CCAGA---------...........................2311.001001000
..........................................................................................................................................................................................................................................................TAGGGTGTTGCGC-TTAATTGG.............................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................GTAACCA--TAGGGTGTTGCGC-T....................................................................................................................................2111.001010000
........................................................................................................................................................................................................................TGAA---ATGTTTTAC---CATAGCG...........................................................................................................................................................2011.001010000
.............................AATTGCTAATTGATTGCACACA..........................................................................................................................................................................................................................................................................................................................................................2211.001010000
..............................................................................................................................................................................GTTTTCCGT-----TAGAAT-CAGCTT....................................................................................................................................................................................................2111.001000001
................................................................................................................................................................................................................................TGTTTTAC---CATAGCGTAACCA--...................................................................................................................................................2111.001000010
.........................................................................................................................................................................................................................GAA---ATGTTTTAC---CATAGCGTA.........................................................................................................................................................2111.001010000
................................................................................................................................................................................................................................................................................................................................................GA------------------CCAGA---------G-AATTATTGAAT----G.........2011.001001000
..........................................................................................................................................................................CATTGTTTTCCGT-----TAGAAT-CAGCTTCAC.................................................................................................................................................................................................2811.001100000
..........................................................................................................................................................................................................ACATCGA-GTGC-ATGAA---ATGTTT........................................................................................................................................................................2211.001010000
..............................................................................................................................................................................................................................................................................GGC--------------------------------------------------------AAAAAGAGA------------------CCAGA---------G-AAT......................2111.001000010
.............................................CACACAT--------------------------------------------------------------------------------------CCTACTATA-------------TTGC---......................................................................................................................................................................................................................................2011.001001000
......................................................................................................................................................................................................................................................................................................................................................................AGA---------G-AATTATTGAAT----GAGT--A...2011.001000001
........................................................................................................................................................................................................................................................................................................................................................................A---------G-AATTATTGAAT----GAGT--AC..1911.001010000
................................................................................................................................................................................................................................................................................................................................................GA------------------CCAGA---------G-AATTATTGAAT----GAGT--....2311.001001000
...........................................................................................................................................................................................................................................................AGGGTGTTGCGC-TTAATTGGC--------------------------------------------------------....................................................................2111.001001000
............................................................................................................................................................................................................................................ATAGCGTAACCA--TAGGGTGTT..........................................................................................................................................2111.001000001
.......................................................................................................................................................................................................................................................A--TAGGGTGTTGCGC-TTAATTG..............................................................................................................................2111.001000001
...................................TAATTGATTGCACACAT--------------------------------------------------------------------------------------C..................................................................................................................................................................................................................................................................1811.001100000
......................................................................................................................................................................................................................................................................................................................................................................AGA---------G-AATTATTGAAT----GAGT--AC..2111.001010000
.....................................................................................................................................................................................................................................................................................................................................................................CAGA---------G-AATTATTGAAT----GAGT--AA..2211.001100000
................................................................................................................................................................................................................................TGTTTTAC---CATAGCGTAACC......................................................................................................................................................2011.001000001
.............................................................................................................................................................................................AGAAT-CAGCTTCACATCGA-G..........................................................................................................................................................................................2011.001001000
droWil2
GAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGA---------------------------------------------------------AAGTAAAGT------------------CAAAT---------GGTGTTA------------TT--TTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................GTAAAGT------------------CAAAT---------GGTGTT.....................1813.00300030
...........................................................................................................................................................................................................................................................................ATTGA---------------------------------------------------------AAGTAAAGT------------------CAAAT---------GGTGT......................2411.00101000
.........................................................................................................................................................................................................................................................................................................................................AAGTAAAGT------------------CAAAT---------GGTGT......................1911.00100100
..............................................................................................................................................................................................................................................................................GA---------------------------------------------------------AAGTAAAGT------------------CAAAT---------GGTGTTA------------TT--....2511.00100010
...........................................................................................................................................................................................................................................................................................................................................GTAAAGT------------------CAAAT---------GGTGTTA------------TT--TTT.2411.00100100
droVir3
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCATTGTTTT-TGTTTTGTT-GAA--------------------CAAAAAA---ATATTT-AC----ATA-----ATTT--AAGTT---TGCGC-TTAACTGAA--------------------------------------------------------AGAAAAGCG---ACAGATAATACGAAGTACGAGAAATCAAATGA------AAAT----GGTT--CTTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................TGAA--------------------------------------------------------AGAAAAGCG---ACAGATAATAC.............................................2412.002000000000020000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ACGAGAAATCAAATGA------AAAT----GG........2211.001000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................ACAGATAATACGAAGTACGAG...................................2111.001000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................AGAAAAGCG---ACAGATAATACG............................................2111.001000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................................................................................................................TA-----ATTT--AAGTT---TGCGC-TTAACTGAA--------------------------------------------------------AG..................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................GCATTGTTTT-TGTTTTGTT-G..............................................................................................................................................................................................................2011.001000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................CATTGTTTT-TGTTTTGTT-GAA--------------------CAAAAA..................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................ACAGATAATACGAAGTACGAGAAATC..............................2611.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................GAAAAGCG---ACAGATAATAC.............................................1911.001000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ACTGAA--------------------------------------------------------AGAAAAGCG---ACAGATAA................................................2311.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AGTT---TGCGC-TTAACTGAA--------------------------------------------------------AG..................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ACGAGAAATCAAATGA------AAAT----GGTT--CT..2611.001000000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................AAGTACGAGAAATCAAATGA------AA................2211.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................AAGCG---ACAGATAATACGAA..........................................1911.001000000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................................................TT-TGTTTTGTT-GAA--------------------CAAAA...................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GTACGAGAAATCAAATGA------AA................2011.001000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................T---TGCGC-TTAACTGAA--------------------------------------------------------AGAAAAGCG---ACAGA...................................................2911.001000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................A--------------------------------------------------------AGAAAAGCG---ACAGATAATAC.............................................2111.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GTACGAGAAATCAAATGA------AAAT----GGT.......2511.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TAATACGAAGTACGAGAAATCAAA...........................2411.001000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................G---ACAGATAATACGAAGTAC......................................1911.001000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TAACTGAA--------------------------------------------------------AGAAAAGCG---ACAGATAATAC.............................................2811.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................GCG---ACAGATAATACGAAGTACGAGAAAT...............................2811.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................ATATTT-AC----ATA-----ATTT--AAGTT---TGCGC-T....................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................CATTGTTTT-TGTTTTGTT-GAA--------------------A.......................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................GC-TTAACTGAA--------------------------------------------------------AGAAAAG.............................................................1811.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AA--------------------------------------------------------AGAAAAGCG---ACAGATAAT...............................................2011.001000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................AA--------------------------------------------------------AGAAAAGCG---ACAGATAATA..............................................2111.001000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AATACGAAGTACGAGAAATC..............................2011.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AACTGAA--------------------------------------------------------AGAAAAGCG---AC......................................................1811.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AA--------------------------------------------------------AGAAAAGCG---ACAGATAATACG............................................2311.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CAGATAATACGAAGTACGAGAAATCAAA...........................2811.001000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AAGTT---TGCGC-TTAACTGAA--------------------------------------------------------AG..................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TGAA--------------------------------------------------------AGAAAAGCG---ACAGATAATACGAAG.........................................2811.001000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................G---ACAGATAATACGAAGTACGAGAAATC..............................2711.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................ATGCATTGTTTT-TGTTTTGT.................................................................................................................................................................................................................2020.501001000000000000000000000000000000000000000000000000000000000000
droMoj3
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTGTTTT-TGTTTTGTT-GA--------TCACAACAA-T------------ATA--T-AC----ATA-----A-TT--TAAGA---TTGCG-CTAACTGA---------------------------------------------------------AAAGAAAAGGCGAAAAACAA-----A----GAGAAAGCCA-------ACAAAAT----GGTTAATTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................AAGA---TTGCG-CTAACTGA---------------------------------------------------------AAAGAAAA............................................................2511.00110

Generated: 05/19/2015 at 01:57 AM