dsi_11126

CTCACCCTGCCTCAGCTACGTGTCTGCAATTCGCCGCTATGATTTTCGCCGTGAGTGAAAGTTGGGAAAAACTAGTGTTTTTTGGAAGACTTTTTTTTATTTTCTTTAGATGTTACTCGAACGAGCTGTTCACAGAAAGACACAGTCTTGTGTAAGTTG ************************************************(((((.(((((((..(((((((....)))))))....))))))).))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries
................................................CCGTGAGTGAAAGTT................................................................................................	15	0	1	1.00	1	0	0	1	0	0	0
.....................................................................................................TTCTTTAGATGTTACTCGAACGAGCTG...............................	27	0	1	1.00	1	0	0	0	1	0	0
.....................................................................................................TTCTTTAGATGTTACTCGAACGAGC.................................	25	0	1	1.00	1	0	0	0	1	0	0
.......................................................................................................CTTTAGATGTTACTCGAACGAGCTGT..............................	26	0	1	1.00	1	0	1	0	0	0	0
.........................................................................................................TTAGATGTTACTCGAACGAGCTG...............................	23	0	1	1.00	1	1	0	0	0	0	0
..............................................................................TTTTTGGAAGGCTTTTGTTTATT..........................................................	23	2	1	1.00	1	0	0	1	0	0	0
..........................................TTTTCGCCGTGAGTGAAAGTTGGGA............................................................................................	25	0	1	1.00	1	1	0	0	0	0	0
.........................................................................................................TTAGATGTTACTCGAACGAGCTGTT.............................	25	0	1	1.00	1	0	1	0	0	0	0
.........................................................................................................TTAGATGTTACTCGAACGAA..................................	20	1	1	1.00	1	0	0	0	0	1	0
.......................................................................................................CTTTAGATGTTACTCGAACGAGCTGTT.............................	27	0	1	1.00	1	1	0	0	0	0	0
.......................................................TGAAAGTTGGGAAAAACTAGTGTTTT..............................................................................	26	0	1	1.00	1	1	0	0	0	0	0
................................................CCGTGAGGGAAAGTTGG..............................................................................................	17	1	2	0.50	1	0	1	0	0	0	0
................................................CCGTGAGTGAAAGTTGA..............................................................................................	17	1	3	0.33	1	1	0	0	0	0	0
..............................................................................TTTTTGGAAGGCTTTTGTATATTT.........................................................	24	3	3	0.33	1	0	0	1	0	0	0
.................................................CGTGAGGGAAAGTTGG..............................................................................................	16	1	4	0.25	1	0	0	0	0	0	1
..................................................GTGAGGGAAAGTTGG..............................................................................................	15	1	17	0.06	1	0	1	0	0	0	0
............................................................................................................CATGTAACTCGAACGAG..................................	17	2	17	0.06	1	0	0	0	1	0	0
............................................................................................................CATGTTAGTCGAACGA...................................	16	2	20	0.05	1	0	0	1	0	0	0

GAGTGGGACGGAGTCGATGCACAGACGTTAAGCGGCGATACTAAAAGCGGCACTCACTTTCAACCCTTTTTGATCACAAAAAACCTTCTGAAAAAAAATAAAAGAAATCTACAATGAGCTTGCTCGACAAGTGTCTTTCTGTGTCAGAACACATTCAAC ************************************************(((((.(((((((..(((((((....)))))))....))))))).))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M023 head	SRR902008 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.....GGACGGAGTCGATGCACAGACGT...................................................................................................................................	23	0	1	2.00	2	0	0	1	1	0	0	0	0
.............................................................................................................................................TGTCAGAACACATTCAAC	18	0	1	2.00	2	0	2	0	0	0	0	0	0
...........................................................................................................................TCGACAAGTGTCTTTCTGTGTC..............	22	0	1	2.00	2	0	2	0	0	0	0	0	0
.......................................................................................................................TTGCTCGACAAGTGTCTTTCTGTGT...............	25	0	1	2.00	2	1	0	0	0	1	0	0	0
..............CGATGCACAGACGTTAAGCGGCGAT........................................................................................................................	25	0	1	2.00	2	1	0	0	1	0	0	0	0
...................................................................................................................GAGCTTGCTCGACAAGTGTCTTTCTGTGT...............	29	0	1	1.00	1	0	0	0	0	0	0	1	0
..GTGGGACGGAGTCGATGCACAGACGT...................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................................................CTTGCTCGACAAGTGTCTTTCTGTGT...............	26	0	1	1.00	1	1	0	0	0	0	0	0	0
.............................................AGCGGCACTCACTTTCAACCC.............................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0
.................................................................................................................ATGAGCTTGCTCGACAAGTGTCTTTATGT.................	29	1	1	1.00	1	0	0	0	0	1	0	0	0
.....................................................................................................................GCTTGCTCGACAAGTGTCTTT.....................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
.........................CGTTAAGCGGCGATACTAAAA.................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0
.....................................................................................................................GCTTGCTCGACAAGTGTCTTTCTGTGT...............	27	0	1	1.00	1	1	0	0	0	0	0	0	0
....GGGACGGAGTCGATGCACAGACGTT..................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0
...TGGGACGGAGTCGATGCACAGACGT...................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0
.........................................................................................................................GCTCGACACGTGTCTT......................	16	1	3	0.33	1	1	0	0	0	0	0	0	0
............GTCGATGCACTGACGTT..................................................................................................................................	17	1	8	0.13	1	1	0	0	0	0	0	0	0
..........................................AAAAGCGGCACTCTC......................................................................................................	15	1	10	0.10	1	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	x:6253812-6253970 -	dsi_11126	CTC---------------------ACCCTGCCTCAGCTACGTGTCTGCAATTCGCCGCTATGATTTTCGCCG-------------TGAGTGAA-AGTTGGGAAA-----AACT-------------------------------------AGTGTTTTT-T--------GGAAGACT---------------------------------TTTTTTTATT------------------------TTCTTTAGATGTTACTCGAACGAGCTGTTCA-C---------AGAAAGA----------------------------------------------CACAGTCTT----GTGTAAGTTG
droSec2	scaffold_4:144314-144477 +		CTC---------------------ACCCTGCCTCAGCTACGTGTCTGCAATTCGCCGCTATGATTTTCGCCG-------------TGAGTGAA-AGTTGGGAAA-----AACT-------------------------------------AGTGTTTTTTT--------GAAAGACT---------------------------------TTTTTTTATT------------------------TTCTTTAGATGTTACTCGAACGAGCTGTTCA-C---------AGAAAGT----------------------------------------------CACAGTCTTTGGAGTGAAAGTTT
dm3	chrX:6650390-6650540 -		CTC---------------------ACTCTGCCAAGGCTACGTGTCTGCAATTCGCCGCGATGATTTTCGTCG-------------TAAGTGAA-AGTTGGGAAA-----AACT-------------------------------------AGGGTTTTT-CGTTTCGGGGAGAAAAT---------------------------------TTTTCTTATTT-----------------------TTTTGTAGATGTTACTCGAAGGAGCTGGCCA-T---------A---AGG----------------------------------------------CATAG------------------
droEre2	scaffold_4690:15575960-15576128 -		TGC---------------------ACACTGACACGGCTCCG--TCTGCAAATCGCCGCGATGAATT-CGCCG-------------TACGCGAACAGTTGAGACTATCGGAACT---------------------------------------------------------------T-----------ACCTTT-TAT------------TTATCTT-TTTTTATCTGACGGAATTTTTCAAATTTATTTTAATGTTTTTTGAATGAGCTGTAGTACAGAACTGAA--------------------------------------------------------------------GAAAACTA
droYak3	X:2613237-2613412 -		CTC---------------------ACACTAACACGGCTACA--ACTGCAATTCGCCGCGACGAATT-CGCCG-------------TATGC-------AGCGAATATCGAAACA-------------------------------------AGTGTGTTT------------------------------------TTT------------TTCTCTTATTTTTATCTGACAAG-------------ATTTTGGTGTTACTCAAACTAGCAGCAATACAGAACTGAG----------------------------------------AACAGAGCTAATTCACCGGCTT-GA--TGTGCGC-C
droEug1	scf7180000409522:321321-321363 -		CTC---------------------ACACCGACACGGGTACG--GCTTCTATTCGCAGCGACGAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000413955:107268-107522 -		CTC---------------------ACACCGACACGCCTACG--GGTTCAATTCGCCGCGCCGAGTT-CGCCG-------------CAACTATGCTATCGCGAGTATCGCAACCAGAACAGCGATGATCACTGCTGCTCTTAGAATGGAATTATATTTTTTT--------GGAAGGTGTGCAAGTTGGAT---------------------AATTTTGCTT------------------------T--TCTCGGTGTTT-CCGTACGGACAGCAGCTCTAGAATGACTGAAACTCACATTCTAGCCTTCAAGTAAACTTTTACAAGTGACAGATCGAGATCA--------------AAGGTTC
droEle1	scf7180000491044:553370-553425 -		CCC---------------------ACACCGACACGACTACG--GTCCCAATTCGCTGCGTTCAATT-CGCCG-------------CAACTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454072:761832-762046 +		CTCTTTCAGCACACGCACGAGCTCACACCGACA------CG--GATTAAATTCGCCGTGGTTAATT-CGCCCAAAACTATCGTTGTGTGT-------CGCGAATATCGCAAAA---------------------------------------------------------------T-----------TCTGCTGATTCTCTTTGCTTTTTTGT-----------------------TTTAGATTTTGTTAGTTGTTATTCGAACAGACTGCTGAGCACAAGTGACTTCGTTTCGCTTTCTGCCTTCCACGTTAACTTT----------------------------------TCACAACTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CTC---------------------ACCCTGCCTCAGCTACGTGTCTGCAATTCGCCGCTATGATTTTCGCCG-------------TGAGTGAA-AGTTGGGAAA-----AACT-------------------------------------AGTGTTTTT-T--------GGAAGACT---------------------------------TTTTTTTATT------------------------TTCTTTAGATGTTACTCGAACGAGCTGTTCA-C---------AGAAAGA----------------------------------------------CACAGTCTT----GTGTAAGTTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................CCG-------------TGAGTGAA-AGTT........................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTCTTTAGATGTTACTCGAACGAGCTG...........................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTCTTTAGATGTTACTCGAACGAGC.............................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................CTTTAGATGTTACTCGAACGAGCTGT..........................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTAGATGTTACTCGAACGAGCTG...........................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................TTTTCGCCG-------------TGAGTGAA-AGTTGGGA....................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTAGATGTTACTCGAACGAGCTGTT.........................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTAGATGTTACTCGAACGAA..............................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................CTTTAGATGTTACTCGAACGAGCTGTT.........................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................TGAA-AGTTGGGAAA-----AACT-------------------------------------AGTGTTTT............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................CCG-------------TGAGTGAA-AGTTGA......................................................................................................................................................................................................................................................................	17	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

CTC---------------------ACCCTGCCTCAGCTACGTGTCTGCAATTCGCCGCTATGATTTTCGCCG-------------TGAGTGAA-AGTTGGGAAA-----AACT-------------------------------------AGTGTTTTTTT--------GAAAGACT---------------------------------TTTTTTTATT------------------------TTCTTTAGATGTTACTCGAACGAGCTGTTCA-C---------AGAAAGT----------------------------------------------CACAGTCTTTGGAGTGAAAGTTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

CTC---------------------ACTCTGCCAAGGCTACGTGTCTGCAATTCGCCGCGATGATTTTCGTCG-------------TAAGTGAA-AGTTGGGAAA-----AACT-------------------------------------AGGGTTTTT-CGTTTCGGGGAGAAAAT---------------------------------TTTTCTTATTT-----------------------TTTTGTAGATGTTACTCGAAGGAGCTGGCCA-T---------A---AGG----------------------------------------------CATAG------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................TAAGTGAA-AGTTGGGAAA-----AACT-------------------------------------....................................................................................................................................................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TAAGTGAA-AGTTGGGAAA-----AACT-------------------------------------AGGG................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................CAATTCGCCGCGATGATTTTCGT....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTTTGTAGATGTTACTCGAAGGAGCT............................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................G-------------TAAGTGAA-AGTTGGGAAA-----AAA..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AGGAGCTGGCCA-T---------A---AGG----------------------------------------------CATA...................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GATTTTCGTCG-------------TAAGTGAA-AGTTGG......................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................AGTTGGGAAA-----AACT-------------------------------------AGGGTTT.............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CGAAGGAGCTGGCCA-T---------A---AGG----------------------------------------------C......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................GAA-AGTTGGGAAA-----AACT-------------------------------------AGGGTT..............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TGC---------------------ACACTGACACGGCTCCG--TCTGCAAATCGCCGCGATGAATT-CGCCG-------------TACGCGAACAGTTGAGACTATCGGAACT---------------------------------------------------------------T-----------ACCTTT-TAT------------TTATCTT-TTTTTATCTGACGGAATTTTTCAAATTTATTTTAATGTTTTTTGAATGAGCTGTAGTACAGAACTGAA--------------------------------------------------------------------GAAAACTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
TGC---------------------ACACTGACACGGCTCCG--T..............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0

droYak3

CTC---------------------ACACTAACACGGCTACA--ACTGCAATTCGCCGCGACGAATT-CGCCG-------------TATGC-------AGCGAATATCGAAACA-------------------------------------AGTGTGTTT------------------------------------TTT------------TTCTCTTATTTTTATCTGACAAG-------------ATTTTGGTGTTACTCAAACTAGCAGCAATACAGAACTGAG----------------------------------------AACAGAGCTAATTCACCGGCTT-GA--TGTGCGC-C	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................................................................................................................TGAG----------------------------------------AACAGAGCTAATTCACCGGCT...............	25	1	54.00	54	0	15	4	0	0	0	0	0	0	0	35
..................................................................................................................................................................................................................................................................................TACAGAACTGAG----------------------------------------AACAGAGCTAATTCACC...................	29	1	36.00	36	9	11	16	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TATCTGACAAG-------------ATTTTGGTGTTACTCA....................................................................................................	27	1	31.00	31	0	7	1	0	0	0	0	0	0	0	23
..................................................................................................................................................................................................................................................................................TACAGAACTGAG----------------------------------------AACAGAGCTAATT.......................	25	1	24.00	24	0	13	1	0	0	0	10	0	0	0	0
.....................................TACA--ACTGCAATTCGCCGCGACGAA..........................................................................................................................................................................................................................................................................................................	25	1	23.00	23	0	22	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TATCTGACAAG-------------ATTTTGGTGTTACT......................................................................................................	25	1	22.00	22	0	16	6	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TACAGAACTGAG----------------------------------------AACAGAGCTAATTCA.....................	27	1	20.00	20	0	19	0	1	0	0	0	0	0	0	0
.......................................................................................TGC-------AGCGAATATCGAAACA-------------------------------------AGTGTGTT............................................................................................................................................................................................................	27	1	17.00	17	0	4	0	0	0	0	0	0	0	0	13
.....................................TACA--ACTGCAATTCGCCGCGACGAAT.........................................................................................................................................................................................................................................................................................................	26	1	14.00	14	0	8	6	0	0	0	0	0	0	0	0
.....................................TACA--ACTGCAATTCGCCGCGACGAATT-.......................................................................................................................................................................................................................................................................................................	27	1	14.00	14	0	13	1	0	0	0	0	0	0	0	0
.....................................TACA--ACTGCAATTCGCCGCGACGA...........................................................................................................................................................................................................................................................................................................	24	1	13.00	13	0	12	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TATCTGACAAG-------------ATTTTGGTGTTACTC.....................................................................................................	26	1	10.00	10	0	6	4	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TACAGAACTGAG----------------------------------------AACAGAGCTAATTC......................	26	1	9.00	9	1	1	7	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TGAG----------------------------------------AACAGAGCTAATTCACCGGC................	24	1	9.00	9	0	6	3	0	0	0	0	0	0	0	0
.....................................................................................TATGC-------AGCGAATATCGAAACA-------------------------------------AGTGTG..............................................................................................................................................................................................................	27	1	9.00	9	0	5	0	0	0	0	4	0	0	0	0
...........................................................................................................................................................................................................................TTTTATCTGACAAG-------------ATTTTGGTGT..........................................................................................................	24	1	7.00	7	0	2	3	2	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TAGCAGCAATACAGAACTGAG----------------------------------------AACAGAGC............................	29	1	6.00	6	0	0	1	0	0	0	1	0	0	0	4
..........................................................................................................................................................................................................................................................................................TGAG----------------------------------------AACAGAGCTAATTCACCGGCTT-.............	26	1	5.00	5	0	5	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TACAGAACTGAG----------------------------------------AACAGAGCT...........................	21	1	5.00	5	1	1	0	1	0	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................TACAGAACTGAG----------------------------------------AACAGAGCTAATTCAC....................	28	1	5.00	5	1	4	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TAGCAGCAATACAGAACTGAG----------------------------------------AACAGA..............................	27	1	4.00	4	0	3	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TACAGAACTGAG----------------------------------------AACAGAGCTAAT........................	24	1	4.00	4	0	2	0	0	0	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................CAATACAGAACTGAG----------------------------------------AACAGAGCTAA.........................	26	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.TC---------------------ACACTAACACGGCTACA--ACTGCAA........................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AACTAGCAGCAATACAGAACTGAG----------------------------------------AACA................................	28	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ACTGAG----------------------------------------AACAGAGCTAATTCACCGGC................	26	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
.......................................................................................TGC-------AGCGAATATCGAAACA-------------------------------------AGTGTG..............................................................................................................................................................................................................	25	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................TAGCAGCAATACAGAACTGAG----------------------------------------AACA................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................TGC-------AGCGAATATCGAAACA-------------------------------------AGTGTGTTT------------------------------------.......................................................................................................................................................................	28	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AGCAATACAGAACTGAG----------------------------------------AACAGAGC............................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TAATTCACCGGCTT-GA--TGTGCGC-C	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAATACAGAACTGAG----------------------------------------AACAGAGCTAAT........................	27	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................GAG----------------------------------------AACAGAGCTAATTCACCGGCT...............	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
......................................ACA--ACTGCAATTCGCCGCGACGAA..........................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................GAACTGAG----------------------------------------AACAGAGCTAATTCACCGGC................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................TCGCCGCGACGAATT-CGCCG-------------TATGC-------AGC......................................................................................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TATCTGACAAG-------------ATTTTGGTGTTACC......................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GACAAG-------------ATTTTGGTGTTACTCAAACT................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GAG----------------------------------------AACAGAGCTAATTCACCGGCTT-GA--.........	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AACTAGCAGCAATACAGAACTGAG----------------------------------------AAC.................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................GAACTGAG----------------------------------------AACAGAGCTAATTCACC...................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.......................................................................................................TATCGAAACA-------------------------------------AGTGTGTTT------------------------------------TTT------------TTC.....................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................ACAGAACTGAG----------------------------------------AACAGAGCTAATTCA.....................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TTTTATCTGACAAG-------------ATTTTGG.............................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GAG----------------------------------------AACAGAGCTAATTCACCGGC................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................CACTAACACGGCTACA--ACTGCAATTCGCC..................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AGAACTGAG----------------------------------------AACAGAGCTAATTCACCG..................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TTT------------TTCTCTTATTTTTATCTGACAAG-------------AT..................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................ACTAGCAGCAATACAGAACTGAG----------------------------------------AACA................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................T------------------------------------TTT------------TTCTCTTATTTTTATCTGACA...................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GAG----------------------------------------AACAGAGCTAATTCACCGGCTT-G............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TTTTTATCTGACAAG-------------ATTTTGGTGT..........................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................AAACA-------------------------------------AGTGTGTTT------------------------------------TTT------------TTCTCTTAT...............................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................G----------------------------------------AACAGAGCTAATTCACCGGCTT-G............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AGCAGCAATACAGAACTGAG----------------------------------------AACA................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................AACTGAG----------------------------------------AACAGAGCTAATTCACCGGC................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................CGCCGCGACGAATT-CGCCG-------------TATGC-------AGC......................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TGAG----------------------------------------AACAGAGCTAATTCACCGGCTT-G............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TACA--ACTGCAATTCGCCGCGACG............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAATACAGAACTGAG----------------------------------------AACAGAGCT...........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................ATCTGACAAG-------------ATTTTGGTGTTACT......................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................AATACAGAACTGAG----------------------------------------AACAGAGCTAA.........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CAAACTAGCAGCAATACAGAACTGAG----------------------------------------....................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..C---------------------ACACTAACACGGCTACA--ACTGCAA........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................ATCTGACAAG-------------ATTTTGGTGTTACTCA....................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AGCTAATTCACCGGCTT-GA--TGTGCGC-C	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTTATCTGACAAG-------------ATTTTGGTGTTACT......................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TTTTGGTGTTACTCAAACTAGCAGT..........................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
................................................AATTCGCCGCGACGAATT-CGCCG-------------.....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................TAACACGGCTACA--ACTGCAATTCGCC..................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................CTGCAATTCGCCGCGACGAA..........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................TATGC-------AGCGAATATCGAAACA-------------------------------------AGTG................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................ACA--ACTGCAATTCGCCGCGACGAAT.........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TACAGAACTGAG----------------------------------------AACAGAGCTAA.........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TACA--ACTGCAATTCGCCGC................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................ACAGAACTGAG----------------------------------------AACAGAGCTAATT.......................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.TC---------------------ACACTAACACGGCTACA--ACTGCA.........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TTATCTGACAAG-------------ATTTTGGTGTTACT......................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................ACA--ACTGCAATTCGCCGCGACGA...........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................TATGC-------AGCGAATATCGAAACA-------------------------------------AGT.................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TAGCAGCAATACAGAACTGAG----------------------------------------AACAGAA.............................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................TGC-------AGCGAATATCGAAACA-------------------------------------AGTGTGT.............................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TCAAACTAGCAGCAATACAGAACTGAG----------------------------------------A...................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TCAAACTAGCAGCAATACAGAACT...............................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................TT-CGCCG-------------TATGC-------AGCGAATATCGAAA...........................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................TCGCCGCGACGAATT-CGCCG-------------TATGC-------A........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................CGAATATCGAAACA-------------------------------------AGTGTGTTT------------------------------------TTT------------........................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.TC---------------------ACACTAACACGGCTACA--ACTGCAAT.......................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ATACAGAACTGAG----------------------------------------AACAGAGCTAAT........................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................TTTTATCTGACAAG-------------ATTTTGGTGC..........................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TACAGAACTGAG----------------------------------------AACAGAGC............................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................G----------------------------------------AACAGAGCTAATTCACCGGCTT-GA--TG.......	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TATCTGACAAG-------------ATTTTGGTGTTA........................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TT------------TTCTCTTATTTTTATCTGACAAG-------------....................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TACTCAAACTAGCAGCAATACAGAAC................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................ATACAGAACTGAG----------------------------------------AACAGAGCT...........................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................TGACAAG-------------ATTTTGGTGTTACTCAAACT................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................ACACGGCTACA--ACTGCAATTCGCC..................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GAGCTAATTCACCGGCTT-GA--TGTGCGC-C	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................G----------------------------------------AACAGAGCTAATTCACCGGCTT-GA--.........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................TATCGAAACA-------------------------------------AGTGTGTTT------------------------------------TTT------------TTCTC...................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................TAACACGGCTACA--ACTGCAATTCGCCGC................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................CGCCG-------------TATGC-------AGCGAATATCGA.............................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................GAATATCGAAACA-------------------------------------AGTGTGTTT------------------------------------TTT------------T.......................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TTTTATCTGACAAG-------------ATTTTGGTGTTACC......................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TAGCAGCAATACAGAACTGAG----------------------------------------AACAGAG.............................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................AGCAATACAGAACTGAG----------------------------------------AACAGAGCT...........................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TCTGACAAG-------------ATTTTGGTGTTACTCAAAC.................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TCAAACTAGCAGCAATACAGAAC................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TAATTCACCGGCTT-GA--TGTGCGC-.	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

CTC---------------------ACACCGACACGGGTACG--GCTTCTATTCGCAGCGACGAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTC---------------------ACACCGACACGCCTACG--GGTTCAATTCGCCGCGCCGAGTT-CGCCG-------------CAACTATGCTATCGCGAGTATCGCAACCAGAACAGCGATGATCACTGCTGCTCTTAGAATGGAATTATATTTTTTT--------GGAAGGTGTGCAAGTTGGAT---------------------AATTTTGCTT------------------------T--TCTCGGTGTTT-CCGTACGGACAGCAGCTCTAGAATGACTGAAACTCACATTCTAGCCTTCAAGTAAACTTTTACAAGTGACAGATCGAGATCA--------------AAGGTTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCC---------------------ACACCGACACGACTACG--GTCCCAATTCGCTGCGTTCAATT-CGCCG-------------CAACTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTCTTTCAGCACACGCACGAGCTCACACCGACA------CG--GATTAAATTCGCCGTGGTTAATT-CGCCCAAAACTATCGTTGTGTGT-------CGCGAATATCGCAAAA---------------------------------------------------------------T-----------TCTGCTGATTCTCTTTGCTTTTTTGT-----------------------TTTAGATTTTGTTAGTTGTTATTCGAACAGACTGCTGAGCACAAGTGACTTCGTTTCGCTTTCTGCCTTCCACGTTAACTTT----------------------------------TCACAACTG	Size	Hit Count	Total Norm	Total
No Reads

dsi_11126

x:6253862-6253920 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads