ID:

dsi_11117

 Coordinate:

3l:16364829-16364978 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_16364695_16364828_+]; exon [3l_16364159_16364828_+]; intron [3l_16364829_16365459_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGCAGCTGCCCAGTCCCATCATCACGAGGCGCACTCGCACGGCCTCGACGTAAGTCCTCCTGCCACCCAACCAGCAAAACCCACCCACTACTGGCCCCACACACACTTGACCCCAAGGGGAACTTGGCCCCTATGCAGAGCCTTAATGGGGCCAAATAGGCGCCGAAAGTTCACATTATTTCACAAGGTTCGCTCTTTTGTACAAAAACCAAATACCACCTTTTGAAATAGAACAAGAATAGCGTGGGG
**************************************************............(((((((..((((................))))...........((((....)))))))....))))......((.(((((((...((.(((.....))).))((((..........))))..)))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
.............GTCCCATCATCACGAGGCGCACTCGCA.................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
......................TCACGAGGCGCACTCGCACGGCCTC........................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
....................................................................................................................................................................................................................AAGACCACCTTTAGAAATAGT................. 21 3 8 0.38 3 0 0 0 2 1
............................................................................................................................................................................................CATCGCTCTTATGTACAAAAA......................................... 21 3 4 0.25 1 0 0 1 0 0
............................................................................................................................................................................................CATCGCTCTTATGTACAAAA.......................................... 20 3 13 0.08 1 0 0 1 0 0
..........................................................TCCTGCCCCCCAACCA................................................................................................................................................................................ 16 1 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GACGTCGACGGGTCAGGGTAGTAGTGCTCCGCGTGAGCGTGCCGGAGCTGCATTCAGGAGGACGGTGGGTTGGTCGTTTTGGGTGGGTGATGACCGGGGTGTGTGTGAACTGGGGTTCCCCTTGAACCGGGGATACGTCTCGGAATTACCCCGGTTTATCCGCGGCTTTCAAGTGTAATAAAGTGTTCCAAGCGAGAAAACATGTTTTTGGTTTATGGTGGAAAACTTTATCTTGTTCTTATCGCACCCC
**************************************************............(((((((..((((................))))...........((((....)))))))....))))......((.(((((((...((.(((.....))).))((((..........))))..)))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
....................................................................................................................................................................................................................TTCTGGTGGAAATCTTTATCA................. 21 3 8 11.38 91 87 1 0 3 0 0 0 0 0 0
.........................................CCGGAGCTGAATCCAGGA............................................................................................................................................................................................... 18 2 3 6.33 19 0 16 0 3 0 0 0 0 0 0
........................................................................................GATGGCCGGAGTGTG................................................................................................................................................... 15 2 20 2.50 50 0 0 50 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCTGGTGGAAATCTTTATC.................. 19 2 2 1.50 3 2 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................CTTCTGGTGGAAATCTTTATC.................. 21 3 8 1.25 10 4 0 0 0 4 0 0 2 0 0
........................................GCCGGAGCTGAATCCAGG................................................................................................................................................................................................ 18 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................TTCTGGTGGAAATCTTTAT................... 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.............................................................................TTTGGGTGGCTGAGGACCGGT........................................................................................................................................................ 21 3 11 0.18 2 0 0 0 0 0 0 0 0 2 0
...................................TGAGTGCCGGAGCTGAATT.................................................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0
...............................................................GATGAGTTGGTAGTTTTGGG....................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................CTTCTGGTGGAAATCTTTAT................... 20 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................TCTGGTGGAAATCTTTATCA................. 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0
..........................................CGGAGCTGAATCCAGGAT.............................................................................................................................................................................................. 18 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0
............................................................................TTTTGGCTGGCTGATGTCC........................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................AGTGTTCCAAGCGAAG..................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................CGATGGCCGGGGTGTG................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................CAAGTGGTCCAAGCGA....................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TTTGGGTTATGGTGG............................. 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................AGTGAAGTAGAGTGTTCC............................................................. 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGTGGAAATCTTTATCAG................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...............................................CTGGATTCAGGAGGACCA......................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCAAGTGGTCCAAGCGA....................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................TCTGGTGGAAATCTTTA.................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Generated: 04/24/2015 at 04:16 AM