dsi_11088

Name	Class	Family	Strand
DM297_I-int	LTR	Gypsy	-

GCATTGGGGGTTACTCTTATCATTTTGTTTTCTTATATTTCTACATTACTAATCTGATTTTGGCAATTTTGCTTAAGAATTACGATTGTGGTTGGTTCTATTTATTTAATTATAGCATTCTCTCTTGTTTTTTATTGTTTTATTATTGATTTAACGATACATTCTCAAATTTGTTTGTAATGCACCTAAATATTTTTCAGGGTTTCCGGAGGTTACAATTGCACTAATTTTGAAGGATGTATTGTCAGCA **********************************************************************.(((((.......((((((((((..........)))))))))).......)))))...**********************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
..........TTACTCTTATCATTTTGTT.............................................................................................................................................................................................................................	19	0	13	2.08	27	27	0	0	0	0	0	0	0
..........TTACTCTTATCATTTTGT..............................................................................................................................................................................................................................	18	0	13	2.08	27	27	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TAATTTTGAAGGATGTATTGTCAGC.	25	0	2	0.50	1	0	0	0	0	1	0	0	0
........................................................................TTAAGAATTACGATTGTGGTTGGTT.........................................................................................................................................................	25	0	2	0.50	1	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................TTCCGGAGGTTACAATTGCACT.........................	22	0	2	0.50	1	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................ATCGCACTAATTTTGAAGGATGTATT.......	26	1	2	0.50	1	0	0	1	0	0	0	0	0
..............................................................................ATTACGATGGGGGTTGGT..........................................................................................................................................................	18	2	4	0.25	1	0	0	0	0	0	1	0	0
...............................................................................................................ATAGCATTCTCTCTTGTTT........................................................................................................................	19	0	20	0.15	3	0	0	0	3	0	0	0	0
..........................................................................................................TAACTATAGCATTCTCTCTTGTTTTT......................................................................................................................	26	1	9	0.11	1	0	0	0	0	0	0	1	0
..............................................................................................GTTCTATTGGTTTAACTATAG.......................................................................................................................................	21	3	10	0.10	1	0	0	1	0	0	0	0	0
..............................................................................................................TATAGCATTCTCTCTTGTT.........................................................................................................................	19	0	20	0.10	2	0	0	0	2	0	0	0	0
...........TACTCTTATCATTTTGT..............................................................................................................................................................................................................................	17	0	13	0.08	1	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................GGTTTCCGTAGGTTACC.................................	17	2	13	0.08	1	0	0	0	1	0	0	0	0
..........TTACTCTTATCATTTTGG..............................................................................................................................................................................................................................	18	1	13	0.08	1	0	0	0	0	0	0	0	1
...............................................................................TTACAATTGTGGTTGGGTCT.......................................................................................................................................................	20	2	13	0.08	1	0	0	0	0	0	1	0	0
........................................................................GTACTAATTACGATTGTGGT..............................................................................................................................................................	20	3	16	0.06	1	0	0	0	0	0	1	0	0
...............................................................................TTACGGTTGTGGTTAGTGCT.......................................................................................................................................................	20	3	17	0.06	1	0	0	0	0	0	1	0	0
..........................................ACTTCACTAATCTGATT...............................................................................................................................................................................................	17	2	17	0.06	1	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................GACTAATTTTGGAGGAT............	17	2	20	0.05	1	0	0	0	1	0	0	0	0

CGTAACCCCCAATGAGAATAGTAAAACAAAAGAATATAAAGATGTAATGATTAGACTAAAACCGTTAAAACGAATTCTTAATGCTAACACCAACCAAGATAAATAAATTAATATCGTAAGAGAGAACAAAAAATAACAAAATAATAACTAAATTGCTATGTAAGAGTTTAAACAAACATTACGTGGATTTATAAAAAGTCCCAAAGGCCTCCAATGTTAACGTGATTAAAACTTCCTACATAACAGTCGT **********************************************************************************************************************.(((((.......((((((((((..........)))))))))).......)))))...**********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M053 female body	M024 male body	SRR618934 dsim w501 ovaries
.....................................AAAGATGTAATGATTAGACTAAAACCGT.........................................................................................................................................................................................	28	0	2	1.00	2	2	0	0	0	0	0	0	0
...............................GAATATAAAGATGTAATGATT......................................................................................................................................................................................................	21	0	2	0.50	1	0	0	1	0	0	0	0	0
...................................ATAAAGATGTAATGATTAGACTAAAACCG..........................................................................................................................................................................................	29	0	2	0.50	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................ACACACATTACGTGGAT..............................................................	17	1	2	0.50	1	0	0	0	1	0	0	0	0
.........................................ATGTAATGATTAGACTAAAACCGT.........................................................................................................................................................................................	24	0	2	0.50	1	0	1	0	0	0	0	0	0
........................................................................................................................................................................................GGATTTATCGAAAGTCCC................................................	18	2	5	0.20	1	0	0	0	0	1	0	0	0
..................................................................................................................................................ACTAAATTACTCTGTAAGCGT...................................................................................	21	3	7	0.14	1	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................CCAAAGGCGTCCAAT...................................	15	1	9	0.11	1	0	1	0	0	0	0	0	0
..............................................................................................................................................................................AAAATGACGTGGATTTAT..........................................................	18	2	13	0.08	1	0	0	0	0	0	1	0	0
........................................................................................................................................................TTGCTATGTCAGAGTTTCC...............................................................................	19	3	17	0.06	1	0	0	0	0	1	0	0	0
.................................ATAGAAAGATGTAGTGA........................................................................................................................................................................................................	17	2	20	0.05	1	0	1	0	0	0	0	0	0
.........................CCACAAGAATATATAGATG..............................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0
........................................................................................................TAATTGATATCGTAAGAGAGAACAAA........................................................................................................................	26	2	20	0.05	1	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................AAGGCGTCCAAGGTTAA..............................	17	2	20	0.05	1	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:1369867-1370116 +	dsi_11088	GCATTGGGGGTTACTCTTATCATT-------------TTGTTTTCT-------TATATTTCTACA------------TTACTAATCTGATTTTGGCAATTTTGC---TTAAGAATT---------------------ACGATTGTGGTTGGTTCTATT-----------------TATTTAATTATAGCATTCTCTCTTGTTT---------------------------------------TTTATTGTTT---TATTATTGATTTAACGATACA--TTCTCAAATTTGTTTGTAATGCACCTAAA-----------------TA-TTTTTCA---------------------------GGGTTTCCGGAGGTTACAATTGCACTAATTTTGAAGGATGTATTGTCAGCA
droSec2	scaffold_5:5807538-5807776 +		GCATTGGGGGTTACTCTTATCATT-------------TTGTTTTCT-------TATATTTCTACA------------TTACTAATCTGATTTTGGCAATTTTGC---TTAAGAATT---------------------ACGATTGTGGTTGGTTCTATT-----------------TATTTAATTATAATATTCTCTCTTGTTT-----------------------------------------------------ATTATTGATTTAACGATACA--TTCTCAAATTTATTTGTAATGCACCTAAA-----------------TA-TTTTTCA---------------------------GGGTTTCCGGAGGTTACAATTGCACTAATTTTGAAGGATGTATTGTCAGCA
dm3	chr2R:447659-447915 +		GCGCTTGCTT--ACTCTTATCATT-------------TTGTTTCCT-------TCTATTTCTATT------------TTATTAAATTGATTTTGGGAATTTTGC---TTAAAAATTATTTGAGT-GAACTCCAGGTTACGATTGTGTTTGGTTTTATG-----------------TATTTTATTATAGCATTCTCTCTTATTT-----------------------------------------------------ATTATTGATTTATCGATACG--TTCACAAATTTGCTTGTAATGTACCTAAA-----------------TA-TTTTTCA---------------------------GGGTTTCCGGAAGTTGCAATAGCACTCATTTTAAAGGATGTATTATCAGCA
droEre2	scaffold_4770:6758850-6759106 +		TTAATTTT----------ATTACT-------------TTTTCTCAATTTCTACCGATATTCCAGAAAATGTTGAAATTTCTCGTTTGCACTTCCACTAG-CTGA---GTAACGGGTATCTGA---------------------------TAGTCGGGT-----------------TACTCGACTATAGCATTCTATCTTGTTT-ATTCTATTTTAATTTTTCTAGTTTTACCGCCAAAACTGTTTCCTT---TTAA--------AAAAGACATATT--------------------------------ATATCGGAAATTTGTTTA-TTTTTCA---------------------------TGGTTTTCTATGG---------TACAGTT---ATTGGGTAAATTGTGAGTA
droYak3	v2_chrX_random_058:20014-20211 +		ACATTGTTTT--ATTATTATAATT-------------TTGTTTTCA-------TTTATTTTAATA------------TCTCCATTTAGTTCTTGACAATTTTGT---GCAATTTTAGTTTCTGTTTGATTCCATGTAAGTATAATATTTGGTTCAACG-----------------TATTGAATTATTTCT---------------------------------------------------------TT---CGAG--------AGAGTTGGTATAAAATTACAAGTGGGATT--------------------------------------------------------------------------------------------CTTGCGCTTAATTATGTTTTTAATGCA
droEug1	scf7180000409665:19473-19652 -		TTATTCTA----------ATAATT-------------TTGTTTCCG-------TTTATTTTTATA------------TAGCCATTTAATTCTTTGCAATTTTGT---GCGATTGTAGTTTTAGTTAGATTCCATGTAAGTATAATATTTGGTTCAGCG-----------------TATAAAATCATTTAA---------------------------------------------------------TT---TGAG--------GGTGTTGGTATA--ATCACAAATTGGTTTCT--TGTGCTTAAT-----------------TA-TATT--------------------------------------------------------------------------------T
droBia1	scf7180000301499:13933-14114 +		GTTTTGGAAT--TTACTAA-----AAAAAGTCAATAGGTGGCGCTC-------TAAAATGTCGCT------------TTGCTGCTTATATATCGTCATTTTTGA---GTAAAGGGTATCTGA---------------------------TAGTCGAGG-----------------CACTCGACTATAGCGTTCTTTCTTGTTT---------------------------------------T-------------ATAATGTATTCAGCATTATT--CTAATAAATAT-----------------------------TCCTTTTC-----TATTTTTTTTA---------------------------------------------------------------------T
droTak1	scf7180000415424:21616-21826 -		TTATTTTATTTTATTTT-A---TT--TTATT------TTATTTTAT-------TTTATTT-TATT------------TTATTTATTT-------ATTTATTTAT---TTAAT---TATTTAA---------------------------TTATTTAATTATTTAATTATTTTAATTATTTAATTATTTAATTATTT-------A-----------------------------------------------------------ATTTATTTATTTA--TTTATTTATTTATT---------------------------TATTTAT-TTATTTATTTATTTA----------------TATCTTCTTCCTAACGCTACAAGTATAATA-----------------CTTATAA
droEle1	scf7180000490919:898-1092 +		CTTTTGTTCTTTATTTTTTCAG-------------------------------TATTATTTTATA------------TTTGTAATTTGAGTTTA----G-TTGA---GTTAGAATTTTCTAG-----------------------------TTTTGGG-----------------TTTTTTATTAATTGTTTGTTT-------T-----------------------------------------------------------TCT-------------TATTTAATTT-----------------------------TAACTTTG-----TATTTTTTGTATTTGCATTTTATTATAAAATTTAATCCTAACGCTACA--AGTTTGAAACTTATAAG-----TTAATGCGC
droRho1	scf7180000774800:34140-34392 +		ACTATAGCGTTCTCTCTTG-----TTAGGTT-----------TTTT-------TTTAGTTCAAAAAAAGATTTATTGTTGATAATGTGAATACTAAAT-GTTGTAATACAAAAACGACTAAAAA-TTATTTCTAATTAAAATTGTA----------------------------------------------------------AATCTAATTCGGATTTTCAAATTCGAATAGGAATATTTTTTAGTTTTT---TAAAATTCACTTTACAAAACA--ATCCTAAATTG------------------------------TTCTTAG--TATTTT---TAGTTTTCAAAAGTC---------------------AATACAAATGAATTTATTAAA---------------AAG
droFic1	scf7180000454160:5007-5130 -		TCATAGTATT--TTTTCT------------------------------------------TTACT------------TTATTAACTTTATTTTAATAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG--CTCTTG------CTTATAA----------------------TTTATTA-TATTTCA---------------------------GGATTTCCGGAGGCAATGATAGCACTAATCTTAAAGGATGTATTATCAGCT
droKik1	scf7180000299306:7816-7873 -		TTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA---------------------------GGATTTCCCGAAACCTTGATAGCACTTATTGTTAAAGACATATTGTCAGCG
droAna3	scaffold_12943:205102-205319 +		ACATTGTGTT--ATTCTTATAATT-------------TTATTTCCC-------TTTATTTGTATG------------TTGCTGTTTGAATTTTGACAATTTTGT---GTAAGAGTTGTTTGGGTCAGATTCCATGTAATTATTACATTTGGTTCAATA-----------------TACTTAATTATTTCT---------------------------------------------------------TT---TGTA--------AGGGCCGGTACAAAATTACATGTTGGGTTTC--TTCGTTTTATTATATTTGCAATACATTCA-CTATTTACTTCTTTG---------------------------------------------------------------------T
droBip1	scf7180000396662:121846-121953 -		ATTCCCAAAG--ATGCTTA-----TAATATTCT--------T-----------ATGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATGTGCCTATT-----------------TTTATTTTCA---------------------------GGATTTCCAGAAGCGTTAATAGCATTAATCCTAAGGGATATAATAGCAGCT
dp5	Unknown_singleton_654:126-208 +		ATTCTCAACC--ATTTTTA-----TTAAATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCA---------------------------GGATTTCCGGAAATTTTAATAGCACTGATATTTAGAGATATAATGTGTGCT
droPer2	scaffold_1:1383448-1383530 -		ATTCTCAACC--ATTTTTA-----TTAAATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCA---------------------------GGATTTCCGGAAATTTTAATAGCACTGATATTTAGAGATATAATGTGTGCT
droWil2	scf2_1100000004921:2476173-2476223 -		G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTTCCGGAGACATTGATAGCCTTGATCCTGAAAGATATTCTGTCGGCT
droMoj3	scaffold_6680:8444956-8445006 +		G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTTCCAGAGACGTTGATAGCATTAATATTCAAGGATGTCCTCGCCGCC
droGri2	scaffold_15110:11795201-11795262 -		TTTTCACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------GGATTCCCCGAGGCGTTGATCGCATTACTTTTCAAAGATGTTTTGTCCGCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCATTGGGGGTTACTCTTATCATT-------------TTGTTTTCT-------TATATTTCTACA------------TTACTAATCTGATTTTGGCAATTTTGC---TTAAGAATT---------------------ACGATTGTGGTTGGTTCTATT-----------------TATTTAATTATAGCATTCTCTCTTGTTT---------------------------------------TTTATTGTTT---TATTATTGATTTAACGATACA--TTCTCAAATTTGTTTGTAATGCACCTAAA-----------------TA-TTTTTCA---------------------------GGGTTTCCGGAGGTTACAATTGCACTAATTTTGAAGGATGTATTGTCAGCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........TTACTCTTATCATT-------------TTGTT..................................................................................................................................................................................................................................................................................................................................................................................	19	13	2.08	27	0	0	0	0	27	0	0	0	0	0	0	0	0	0	0	0	0
..........TTACTCTTATCATT-------------TTGT...................................................................................................................................................................................................................................................................................................................................................................................	18	13	2.08	27	0	0	0	0	27	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTGAAGGATGTATTGTCAGC.	25	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................TTAAGAATT---------------------ACGATTGTGGTTGGTT...................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TTCCGGAGGTTACAATTGCACT.........................	22	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................ATAGCATTCTCTCTTGTTT---------------------------------------..........................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................................................................................................................................................................................TATAGCATTCTCTCTTGTT..................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........TACTCTTATCATT-------------TTGT...................................................................................................................................................................................................................................................................................................................................................................................	17	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........TTACTCTTATCATT-------------TTGG...................................................................................................................................................................................................................................................................................................................................................................................	18	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

GCATTGGGGGTTACTCTTATCATT-------------TTGTTTTCT-------TATATTTCTACA------------TTACTAATCTGATTTTGGCAATTTTGC---TTAAGAATT---------------------ACGATTGTGGTTGGTTCTATT-----------------TATTTAATTATAATATTCTCTCTTGTTT-----------------------------------------------------ATTATTGATTTAACGATACA--TTCTCAAATTTATTTGTAATGCACCTAAA-----------------TA-TTTTTCA---------------------------GGGTTTCCGGAGGTTACAATTGCACTAATTTTGAAGGATGTATTGTCAGCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................................................................................................................................................................................................................................................ATTGCACTAATTTTGAAGGATGTATT.......	26	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGGATGTATTGTCAGC.	21	1	1.00	1	0	1	0	0

dm3

GCGCTTGCTT--ACTCTTATCATT-------------TTGTTTCCT-------TCTATTTCTATT------------TTATTAAATTGATTTTGGGAATTTTGC---TTAAAAATTATTTGAGT-GAACTCCAGGTTACGATTGTGTTTGGTTTTATG-----------------TATTTTATTATAGCATTCTCTCTTATTT-----------------------------------------------------ATTATTGATTTATCGATACG--TTCACAAATTTGCTTGTAATGTACCTAAA-----------------TA-TTTTTCA---------------------------GGGTTTCCGGAAGTTGCAATAGCACTCATTTTAAAGGATGTATTATCAGCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........TT--ACTCTTATCATT-------------TTGTTTC................................................................................................................................................................................................................................................................................................................................................................................	21	20	32.05	641	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	7	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	5	0	0	381	13	0	0	0	0	0	0	1	0	0	5	2	0	3	0	0	0	0	0	0	10	1	0	0	0	5	0	0	0	0	0	0	26	0	3	0	2	0	0	0	0	0	0	0	0	0	0	1	17	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24	0	7	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	48	22	0
.............CTCTTATCATT-------------TTGTTTCCT-------T......................................................................................................................................................................................................................................................................................................................................................................	21	20	11.55	231	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	4	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	7	0	24	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	2	49	61	3	0	0	0	0	0	0	2	0	0	1	0	1	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	24	16	0	0
.........T--ACTCTTATCATT-------------TTGTTTCCT-------TC.....................................................................................................................................................................................................................................................................................................................................................................	24	20	10.00	200	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	105	0	46	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0
.........T--ACTCTTATCATT-------------TTGTTTCCT-------TCTA...................................................................................................................................................................................................................................................................................................................................................................	26	20	9.30	186	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	106	1	61	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TT--ACTCTTATCATT-------------TTGTTTCCT-------TC.....................................................................................................................................................................................................................................................................................................................................................................	25	20	7.55	151	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	29	0	44	0	44	5	19	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............ACTCTTATCATT-------------TTGTTTCCT-------.......................................................................................................................................................................................................................................................................................................................................................................	21	20	6.75	135	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	4	0	44	4	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	21	0	3	0
...............CTTATCATT-------------TTGTTTCCT-------TCT....................................................................................................................................................................................................................................................................................................................................................................	21	20	5.15	103	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	37	39	1	0	0	0	0	0	0	1	0	0	1	2	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TTCCGGAAGTTGCAATAGCACTCATT.....................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
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...................TCATT-------------TTGTTTCCT-------TCTATT.................................................................................................................................................................................................................................................................................................................................................................	20	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TATCATT-------------TTGTTTCCT-------TCTA...................................................................................................................................................................................................................................................................................................................................................................	20	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ACTCTTATCATT-------------TTGTTTCCT-------TCTAT..................................................................................................................................................................................................................................................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ACTCTTATCATT-------------TTGTTTCCT-------TCTA...................................................................................................................................................................................................................................................................................................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........T--ACTCTTATCATT-------------TTGTT..................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........T--ACTCTTATCATT-------------TTGTTTCCT-------TCTATTT................................................................................................................................................................................................................................................................................................................................................................	29	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TT--ACTCTTATCATT-------------TTGTT..................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CTTATCATT-------------TTGTTTCCT-------TCTA...................................................................................................................................................................................................................................................................................................................................................................	22	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droEre2

TTAATTTT----------ATTACT-------------TTTTCTCAATTTCTACCGATATTCCAGAAAATGTTGAAATTTCTCGTTTGCACTTCCACTAG-CTGA---GTAACGGGTATCTGA---------------------------TAGTCGGGT-----------------TACTCGACTATAGCATTCTATCTTGTTT-ATTCTATTTTAATTTTTCTAGTTTTACCGCCAAAACTGTTTCCTT---TTAA--------AAAAGACATATT--------------------------------ATATCGGAAATTTGTTTA-TTTTTCA---------------------------TGGTTTTCTATGG---------TACAGTT---ATTGGGTAAATTGTGAGTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................TTCCACTAG-CTGA---GTAACGGG.........................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0

droYak3

ACATTGTTTT--ATTATTATAATT-------------TTGTTTTCA-------TTTATTTTAATA------------TCTCCATTTAGTTCTTGACAATTTTGT---GCAATTTTAGTTTCTGTTTGATTCCATGTAAGTATAATATTTGGTTCAACG-----------------TATTGAATTATTTCT---------------------------------------------------------TT---CGAG--------AGAGTTGGTATAAAATTACAAGTGGGATT--------------------------------------------------------------------------------------------CTTGCGCTTAATTATGTTTTTAATGCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................................................................................................TGGTATAAAATTACAAGTGGGATT--------------------------------------------------------------------------------------------CT.........................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7
............................................................................................................................................................................................................................................................................TTGGTATAAAATTACAAGTGGGATT--------------------------------------------------------------------------------------------...........................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6
...............................................................................................................................................................................TATTGAATTATTTCT---------------------------------------------------------TT---CGAG--------AGAGT...............................................................................................................................................	26	6	5.83	35	0	0	0	0	0	0	0	0	0	0	35
............................................................................................................................................................................................................................................................................TTGGTATAAAATTACAAGTGGGATT--------------------------------------------------------------------------------------------C..........................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5
...............................................................................TCCATTTAGTTCTTGACAATTTTGT---GCA..............................................................................................................................................................................................................................................................................................................	28	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TAAAATTACAAGTGGGATT--------------------------------------------------------------------------------------------CTTGCGCT...................	27	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TAAAATTACAAGTGGGATT--------------------------------------------------------------------------------------------CTTGCGC....................	26	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................TACAAGTGGGATT--------------------------------------------------------------------------------------------CTTGCGCTTAATTA.............	27	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TTGGTATAAAATTACAAGTGGGATT--------------------------------------------------------------------------------------------CT.........................	27	1	3.00	3	0	1	0	0	0	0	0	0	0	0	2
.....................................................................................................................................................................................ATTATTTCT---------------------------------------------------------TT---CGAG--------AGAGTTGG............................................................................................................................................	23	5	2.80	14	0	0	0	0	0	0	0	0	0	0	14
.............................................................AATA------------TCTCCATTTAGTTCTTGACAAT.........................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AAAATTACAAGTGGGATT--------------------------------------------------------------------------------------------CTTGCGCT...................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................TA------------TCTCCATTTAGTTCTTGACAATTTTG.....................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
............................................................TAATA------------TCTCCATTTAGTTCTTGACAAT.........................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................GTTTGATTCCATGTAAGTATAATATT........................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
........................................TTTTCA-------TTTATTTTAATA------------TCTCCATT.......................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................TAGTTTCTGTTTGATTCCATGTAAG.................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................ATTGAATTATTTCT---------------------------------------------------------TT---CGAG--------AGAGT...............................................................................................................................................	25	6	2.00	12	0	0	0	0	0	0	0	0	0	0	12
.......................................................................................................................................................................................TATTTCT---------------------------------------------------------TT---CGAG--------AGAGTTGGTA..........................................................................................................................................	23	5	1.80	9	0	8	0	0	0	0	1	0	0	0	0
.........................................TTTCA-------TTTATTTTAATA------------TCTCCATTTAG....................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................TTTCTGTTTGATTCCATGTAAGTATA.............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GGTATAAAATTACAAGTGGGATT--------------------------------------------------------------------------------------------CT.........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................TTTTAATA------------TCTCCATTTAGTTCT................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTTGATTCCATGTAAGTATAATATT........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTTGATTCCATGTAAGTATAATATT........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................TCTGTTTGATTCCATGTAAGTATAA............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................TCTGTTTGATTCCATGTAAGTATAAT...........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................TTGATTCCATGTAAGTATAATATTTGG.....................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................TTAGTTCTTGACAATTTTGT---GCAATT...........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................TATTTTAATA------------TCTCCATTTAGTTCT................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................T---GCAATTTTAGTTTCTGTTTGATTCC........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................TGATTCCATGTAAGTATAATATTTGGT....................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TACAAGTGGGATT--------------------------------------------------------------------------------------------CTTGCGCT...................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................TTTTGT---GCAATTTTAGTTTCTGTT...............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................TTAGTTTCTGTTTGATTCCATGTAAG.................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................TTTAATA------------TCTCCATTTAGTTCTTGACAAT.........................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................TTAATA------------TCTCCATTTAGTTCTTGACAAT.........................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TTTTAGTTTCTGTTTGATTCCATGTAA..................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TATAAAATTACAAGTGGGATT--------------------------------------------------------------------------------------------CTT........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................TAGTTTCTGTTTGATTCCATGTAAGTA...............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................TGACAATTTTGT---GCAATTTTAGTTTC...................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TATAAAATTACAAGTGGGATT--------------------------------------------------------------------------------------------CTTG.......................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................TCCATTTAGTTCTTGACAATTTTG.....................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TTGGTATAAAATTACAAGTGGGAT........................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................TTTCTGTTTGATTCCATGTAAGTATAATA..........................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................TCTTGACAATTTTGT---GCAATTTTAGT......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................TCCATTTAGTTCTTGACAATTTTGT---G................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................TGATTCCATGTAAGTATAATATTTGG.....................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TGTAAGTATAATATTTGGTTCAACG-----------------.............................................................................................................................................................................................................................................	25	5	0.60	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGAATTATTTCT---------------------------------------------------------TT---CGAG--------AGAGTTGGTA..........................................................................................................................................	28	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TT---CGAG--------AGAGTTGGTATAAAATTACA................................................................................................................................	26	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TATTTCT---------------------------------------------------------TT---CGAG--------AGAGTTGGTATA........................................................................................................................................	25	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................T--------------------------------------------------------------------------------------------CTTGCGCTTAATTATGTTTTTAA....	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TT--------------------------------------------------------------------------------------------CTTGCGCTTAATTATGTTTTTAA....	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGGGATT--------------------------------------------------------------------------------------------CTTGCGCTTAATTATGTT.........	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TT--------------------------------------------------------------------------------------------CTTGCGCTTAATTATGTTTTTAATGC.	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................ATTTCT---------------------------------------------------------TT---CGAG--------AGAGTTGGTA..........................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGAATTATTTCT---------------------------------------------------------TT---CGAG--------AGAGTT..............................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GAATTATTTCT---------------------------------------------------------TT---CGAG--------AGAGTTGGTA..........................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TGTAAGTATAATATTTGGTTCAACG-----------------TAT..........................................................................................................................................................................................................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCT---------------------------------------------------------TT---CGAG--------AGAGTTGGTATAAAATTAC.................................................................................................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................T---------------------------------------------------------TT---CGAG--------AGAGTTGGTATAAAATTACA................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TTGAATTATTTCT---------------------------------------------------------TT---CGAG--------AGAGTT..............................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................TTATTTCT---------------------------------------------------------TT---CGAG--------AGAGTTGGTA..........................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................T---------------------------------------------------------TT---CGAG--------AGAGTTGGTATAAAATTACAA...............................................................................................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TTATTCTA----------ATAATT-------------TTGTTTCCG-------TTTATTTTTATA------------TAGCCATTTAATTCTTTGCAATTTTGT---GCGATTGTAGTTTTAGTTAGATTCCATGTAAGTATAATATTTGGTTCAGCG-----------------TATAAAATCATTTAA---------------------------------------------------------TT---TGAG--------GGTGTTGGTATA--ATCACAAATTGGTTTCT--TGTGCTTAAT-----------------TA-TATT--------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTTTTGGAAT--TTACTAA-----AAAAAGTCAATAGGTGGCGCTC-------TAAAATGTCGCT------------TTGCTGCTTATATATCGTCATTTTTGA---GTAAAGGGTATCTGA---------------------------TAGTCGAGG-----------------CACTCGACTATAGCGTTCTTTCTTGTTT---------------------------------------T-------------ATAATGTATTCAGCATTATT--CTAATAAATAT-----------------------------TCCTTTTC-----TATTTTTTTTA---------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTATTTTATTTTATTTT-A---TT--TTATT------TTATTTTAT-------TTTATTT-TATT------------TTATTTATTT-------ATTTATTTAT---TTAAT---TATTTAA---------------------------TTATTTAATTATTTAATTATTTTAATTATTTAATTATTTAATTATTT-------A-----------------------------------------------------------ATTTATTTATTTA--TTTATTTATTTATT---------------------------TATTTAT-TTATTTATTTATTTA----------------TATCTTCTTCCTAACGCTACAAGTATAATA-----------------CTTATAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTTTTGTTCTTTATTTTTTCAG-------------------------------TATTATTTTATA------------TTTGTAATTTGAGTTTA----G-TTGA---GTTAGAATTTTCTAG-----------------------------TTTTGGG-----------------TTTTTTATTAATTGTTTGTTT-------T-----------------------------------------------------------TCT-------------TATTTAATTT-----------------------------TAACTTTG-----TATTTTTTGTATTTGCATTTTATTATAAAATTTAATCCTAACGCTACA--AGTTTGAAACTTATAAG-----TTAATGCGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACTATAGCGTTCTCTCTTG-----TTAGGTT-----------TTTT-------TTTAGTTCAAAAAAAGATTTATTGTTGATAATGTGAATACTAAAT-GTTGTAATACAAAAACGACTAAAAA-TTATTTCTAATTAAAATTGTA----------------------------------------------------------AATCTAATTCGGATTTTCAAATTCGAATAGGAATATTTTTTAGTTTTT---TAAAATTCACTTTACAAAACA--ATCCTAAATTG------------------------------TTCTTAG--TATTTT---TAGTTTTCAAAAGTC---------------------AATACAAATGAATTTATTAAA---------------AAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCATAGTATT--TTTTCT------------------------------------------TTACT------------TTATTAACTTTATTTTAATAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG--CTCTTG------CTTATAA----------------------TTTATTA-TATTTCA---------------------------GGATTTCCGGAGGCAATGATAGCACTAATCTTAAAGGATGTATTATCAGCT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA---------------------------GGATTTCCCGAAACCTTGATAGCACTTATTGTTAAAGACATATTGTCAGCG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ACATTGTGTT--ATTCTTATAATT-------------TTATTTCCC-------TTTATTTGTATG------------TTGCTGTTTGAATTTTGACAATTTTGT---GTAAGAGTTGTTTGGGTCAGATTCCATGTAATTATTACATTTGGTTCAATA-----------------TACTTAATTATTTCT---------------------------------------------------------TT---TGTA--------AGGGCCGGTACAAAATTACATGTTGGGTTTC--TTCGTTTTATTATATTTGCAATACATTCA-CTATTTACTTCTTTG---------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................TACAAAATTACATGTTGGGTTTC--TTCG...............................................................................................................	27	5	0.60	3	3	0	0	0	0	0
....................................................................................................TTGT---GTAAGAGTTGTTTGGGTCAGATTC.........................................................................................................................................................................................................................................................................................	28	7	0.29	2	2	0	0	0	0	0
...................................................................................................TTTGT---GTAAGAGTTGTTTGGGTCAGAT...........................................................................................................................................................................................................................................................................................	27	7	0.29	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................TACAAAATTACATGTTGGGTTTC--TTCGTT.............................................................................................................	29	5	0.20	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ACAAAATTACATGTTGGGTTTC--TT.................................................................................................................	24	6	0.17	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TATTATATTTGCAATACATTCA-CTATT................................................................................	27	6	0.17	1	1	0	0	0	0	0
....................................................................................................TTGT---GTAAGAGTTGTTTGGGTCAGAT...........................................................................................................................................................................................................................................................................................	26	7	0.14	1	1	0	0	0	0	0
.....................................................................................................TGT---GTAAGAGTTGTTTGGGTCAGATA..........................................................................................................................................................................................................................................................................................	26	7	0.14	1	1	0	0	0	0	0
....................................................................................................TTGT---GTAAGAGTTGTTTGGGTCAGATT..........................................................................................................................................................................................................................................................................................	27	7	0.14	1	1	0	0	0	0	0
............................................................................................................TAAGAGTTGTTTGGGTCAGA............................................................................................................................................................................................................................................................................................	20	7	0.14	1	1	0	0	0	0	0
....................................................................................................TTGT---GTAAGAGTTGTTTGGGTCAGA............................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	0	0	0	1	0
.......................................................................................................T---GTAAGAGTTGTTTGGGTCAGATTCCA.......................................................................................................................................................................................................................................................................................	27	7	0.14	1	1	0	0	0	0	0
...........................................................................................................................................TATTACATTTGGTTCAATA-----------------TACTT........................................................................................................................................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGCAATACATTCA-CTATTTACTTCTTTG---------------------------------------------------------------------.	28	8	0.13	1	1	0	0	0	0	0
.........T--ATTCTTATAATT-------------TTATTTCCC-------TTTATT.................................................................................................................................................................................................................................................................................................................................................................	28	9	0.11	1	1	0	0	0	0	0
........................................TTTCCC-------TTTATTTGTATG------------TTGCTGT........................................................................................................................................................................................................................................................................................................................................	25	9	0.11	1	1	0	0	0	0	0

droBip1

ATTCCCAAAG--ATGCTTA-----TAATATTCT--------T-----------ATGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATGTGCCTATT-----------------TTTATTTTCA---------------------------GGATTTCCAGAAGCGTTAATAGCATTAATCCTAAGGGATATAATAGCAGCT	Size	Hit Count	Total Norm	Total
No Reads

dp5

ATTCTCAACC--ATTTTTA-----TTAAATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCA---------------------------GGATTTCCGGAAATTTTAATAGCACTGATATTTAGAGATATAATGTGTGCT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................TTCCGGAAATTTTAATAGCACTGATA.....................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0

droPer2

ATTCTCAACC--ATTTTTA-----TTAAATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCA---------------------------GGATTTCCGGAAATTTTAATAGCACTGATATTTAGAGATATAATGTGTGCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTTCCGGAGACATTGATAGCCTTGATCCTGAAAGATATTCTGTCGGCT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................................................................................................................................................................................................................TTTCCGGAGACATTGATAGCCTTGATCC....................	28	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................ATAGCCTTGATCCTGAAAGATATTCT.......	26	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................CATTGATAGCCTTGATCCTG..................	20	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................ATAGCCTTGATCCTGAAAGAT............	21	1	1.00	1	0	0	1	0	0

droMoj3

G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTTCCAGAGACGTTGATAGCATTAATATTCAAGGATGTCCTCGCCGCC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TTTTCACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------GGATTCCCCGAGGCGTTGATCGCATTACTTTTCAAAGATGTTTTGTCCGCT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_11088

2r:1369917-1370066 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-4.6	-4.2	-4.2