ID:

dsi_11041

 Coordinate:

2r:5375290-5375439 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.4 -11.0

Flybase annnotation

CDS [2r_5375440_5375575_+]; exon [2r_5375440_5375575_+]; intron [2r_5365180_5375439_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGTGGCAGCAGCGGCAGGTGGTGATATCAGTTGGTTTTCGGCTTGCGACGGCGCTACAACGAGTGGGTGGGTGCAATGGGAGAATGGTTGCAGGAGCCAACCGGGCGAACACTTGACGAGGCGGGGAAACCAATAGTTCTACACCGCTGAAATTTGCATGCCAATTGGCCACTAATTTGACATTTCTATTGCCCTTTCAGAATGGACAGCTTCTGGGTGCAGAGCGCTATTGGCGCGATCAAGGCGATCG
******************************************************************(((..(((..(((.....(((((.....))))).))).)))..)))........********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 O002
Head
 M025
embryo
 M023
head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
..................................................................GTGGGTGCAATGGGAGAATGGTT................................................................................................................................................................. 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAATGGACAGCTTCTGGGT................................ 19 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0
................................................................GGGTGGGTGCAATGGGAGAAT..................................................................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GTGGAATGGACAGCTTCTGGGTGCAGA........................... 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTCTGGGTGCAGAGCGCTATTGGC................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................TCTGGGTGCAGAGCGCTATTGGCG............... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................TCGGCTTGCGACGGCGCTACAACGA............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CTTCTGGGTTCAGAGCGCT...................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................AGTGGGTGGGTGCAATGGGAGAA...................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................GGACAGCTTCTGGGTGCAGG........................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GCAGAGCGCTATTGGCGCGATCAAGGC..... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATGGACAGCTTCTGGGTGCAGAGCG........................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GACAGCTTCTGGGTGCAGAGCG........................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................ACCGGGCGAACACTTGACGAG.................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................TGCAGGAGCCAACCGGGC................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................GTGGAATGGACAGCTTCTGGGT................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GGAATGGACAGCTTCTGGGTGC.............................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CGGGCGAACACTTGACGAG.................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................CGAATGGACAGCTTCTGGGTGCAGAG.......................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AGAGCGCTATTGGCGCGATCAAGGCG.... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCTATTGGCGCGATCAAGG...... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................TTGGTTTTCGGCTTGCGACGGC...................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGCGCTATTGGCGCGATCAAGG...... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GGGAAACCAATAGTTCTACACCGCTGA.................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATGGACAGCTTCTGGGTGCAGAGCGCT...................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATGGACAGCTTCTGGGTGC.............................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGGTGCAGAGCGCTATTGGC................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTGCAGAGCGCTATTGGCGCGATCAAGG...... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TACAATATGGACAGCTTCTGGGT................................ 23 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................GGCTTGCGACGGCGCTACAACGA............................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AATTTGCATGCCAATTGGCCACTAATT......................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AGAGCGCTATTGGCGCGATCAAGG...... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GACAGCTTCTGGGTGCAGAGC......................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAAATGGACAGCTTCTGGGTGC.............................. 22 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......................GATATCAGTTGGTTTTCGGCTTGCGAC......................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGCTTCTGGGTGCAGAGC......................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCTATTGGCGCGATCAAGGCGAT.. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GGGAGTATGGTTGCA.............................................................................................................................................................. 15 1 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0
.............................GCCGGTATTCGGCTTGCGAC......................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................AATGGACAACACCTGGGTGC.............................. 20 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................TAATATCAGTTGGTTTCTGG................................................................................................................................................................................................................. 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................CGATTCAGATTGGACAGCTT...................................... 20 3 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................CGAACACTCGACGAG.................................................................................................................................. 15 1 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0
.................................GTTTTCGGATTGCGTCG........................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................CTATAGGCACGATCAA........ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
...................................TTTCGTCTTGCGACGT....................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TCACCGTCGTCGCCGTCCACCACTATAGTCAACCAAAAGCCGAACGCTGCCGCGATGTTGCTCACCCACCCACGTTACCCTCTTACCAACGTCCTCGGTTGGCCCGCTTGTGAACTGCTCCGCCCCTTTGGTTATCAAGATGTGGCGACTTTAAACGTACGGTTAACCGGTGATTAAACTGTAAAGATAACGGGAAAGTCTTACCTGTCGAAGACCCACGTCTCGCGATAACCGCGCTAGTTCCGCTAGC
**********************************************************************************************************************************(((..(((..(((.....(((((.....))))).))).)))..)))........****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
................................................GCCGCGATGTTGCTCACCCAC..................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0
..................ACCACTATTGTCAAC......................................................................................................................................................................................................................... 15 1 8 0.13 1 0 1 0 0
.............................................GCTGCAGCGATATTGC............................................................................................................................................................................................. 16 2 13 0.08 1 0 0 1 0
.....................................................GATGTTGCACACCCTCC.................................................................................................................................................................................... 17 2 14 0.07 1 0 0 1 0
......................................................................................................................................................................................................................CCCAGGTTTCGCGATA.................... 16 2 20 0.05 1 0 1 0 0
TCACAGTCGTCGCCG........................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1

Generated: 04/23/2015 at 01:20 PM