ID:

dsi_1104

 Coordinate:

2r:5838454-5838603 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.0 -29.9 -29.9

Flybase annnotation

CDS [2r_5838604_5838616_+]; three_prime_UTR [2r_5838617_5839161_+]; exon [2r_5838604_5839161_+]; intron [2r_5837478_5838603_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGGGGATAGCCCCGAAAATAACCAATCTGGGCGTGGGCCTTGCCAGGTGGTGTGTACATAAGTGCGTGATTCAGTGGAGCAGCTGGGCAGTTACCATTGGGCACTCTCTCAGCACGCTGTAAGATCCGCGATCGCGGTAGAAATTGCCATACCACAATTGATGCAATAACAACTCTCGTTTCATTTCGTTTCGTTTAAGGTGGCGCGCTTGAAGATTACCAGACGATTGTGGATCGGAGCACCAGTCGG
**************************************************..........((((((((((((..(((((((.((((((.(((..((...))..)))..))))))..)).......))))))))))))(((..(((((........)))))..))).................))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.......................................................................................................................................................................................................................ATTACCAGACGATTGTGGATC.............. 21 0 1 5.00 5 2 1 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATTACCAGACGATTGTGGATCGGAGC......... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CAGACGATTGTGGATCGGAGC......... 21 0 1 2.00 2 0 0 0 0 0 1 0 0 1 0 0 0
........................................................................................................................................................................................................................TTGCCAGACGATTGTGGATC.............. 20 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................CTCAGCACGCTGTAAGATCCGCGA...................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTACCAGACGATTGTGGATC.............. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CTCAGCACGCTGTAAGATCCG......................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ACCAGACGATTGTGGATCGGA........... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GATTACCAGACGATTGTGGAT............... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GTAACGATTGGGCACTGTCT............................................................................................................................................ 20 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GACGATTGTGGATCGGAGCACC...... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................ATTGTGGATCGGAGCACC...... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GATTGTGCATCGGAGCACCAG.... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................GACGATTGTGGATCGGAGCA........ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TACCAGACGATTGTGGATCGGA........... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................GCTGTAAGATCCGCGATCGCGGTAGAA........................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................CACGCTCTAAGATCCGCG....................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AAGATCCGCGATCGCGGTA.............................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................TTGGGCACTCTCTCAAC........................................................................................................................................ 17 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................CAATCTGGGCGTGGGG................................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................CCCTCGAAGAATACCAGACGAT...................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCGAAGAATACCAGACGAT...................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................GCGGTTACCATTAGGCAC................................................................................................................................................. 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CCCTCGAAGAATACCAGACGA....................... 21 3 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0 0
...........................................................................TGGAGCTGCTGGGCAGT.............................................................................................................................................................. 17 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................GAAGAATACCAGACGATGCT................... 20 3 9 0.22 2 0 0 0 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTCGAAGAATACCAGACGA....................... 19 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................GCCTGGTGGTGTGTACGGA............................................................................................................................................................................................. 19 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................TTGGGCACTGTCTCA.......................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................TGAAAGATCCGCGATC.................................................................................................................... 16 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................GATTGAGTGGCGCAGCT..................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................AATTGGGCACTGTCTCA.......................................................................................................................................... 17 2 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................GTGGAGCAGCTCGGTA................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................GCACGCTGTAAGGTTCGA........................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................CTCAATTGATCCAATAACT.............................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................GAACATAAGTGGGTGAGTCA................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

GGCCCCTATCGGGGCTTTTATTGGTTAGACCCGCACCCGGAACGGTCCACCACACATGTATTCACGCACTAAGTCACCTCGTCGACCCGTCAATGGTAACCCGTGAGAGAGTCGTGCGACATTCTAGGCGCTAGCGCCATCTTTAACGGTATGGTGTTAACTACGTTATTGTTGAGAGCAAAGTAAAGCAAAGCAAATTCCACCGCGCGAACTTCTAATGGTCTGCTAACACCTAGCCTCGTGGTCAGCC
**************************************************..........((((((((((((..(((((((.((((((.(((..((...))..)))..))))))..)).......))))))))))))(((..(((((........)))))..))).................))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...........................................................................................................................................................................TTGAGAGCAAAGTAAAGCAAA.......................................................... 21 0 1 1.00 1 0 0 1 0 0 0
........................................................TGTATTCACGCACTAAGTCAC............................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................CGTGAGAGAGTCGTGCGACAT................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
.........CGGGGCTTTTATTGGTTA............................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
........CCGGGGCTTTTATTGGTTAGA............................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................GTCTGCTAACACCTAGCCTCGT........ 22 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................ATGGTCTGCTAACACCTAGCCT........... 22 0 1 1.00 1 1 0 0 0 0 0
..............TTTTTATTGGTTAGACCTGCAT...................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 1 0
..................................................................................................................................................................................................................ACTTCTTATGGTCTGCTACG.................... 20 3 4 0.25 1 0 0 0 1 0 0
..............................................................................................................................................................................................................GGGAGCTTCTTATGGTCTGCT....................... 21 3 5 0.20 1 0 0 0 1 0 0
.........................................ACGGTCCACCACGCAAGT............................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 1
.............................................................................................................................................................................................AAAGCACATTCCACGGCTC.......................................... 19 3 15 0.07 1 0 0 0 1 0 0
.........................................................................................................AGACAGTCTTGCGAGATT............................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0

Generated: 04/24/2015 at 01:03 AM