ID:

dsi_11034

 Coordinate:

3l:20952065-20952214 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.6 -3.2 -3.1

Flybase annnotation

three_prime_UTR [3l_20950794_20952482_+]; exon [3l_20950657_20952482_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
TGTTTATAAAATCAATAGCTGAATTATTTAACTTCGTAAACTTGTCAGCAAAACTTAAAAAATATCCTGAACAGAAAACGGCAAAGAAAAATATTCTAATAGTGTTAAGTGGTCGAAACTATCTAAATAGCTCTTAGTCCCTAGAGAGCCATAGTTTTTAAATCAGCGTTTTGTTAATTTTAATTGATTAGTCTTAGTAGTTTTAATTTCAGCATTGGCATAATTTGGAAACACAAAAGCTGTCACGCTA
*******************************************************.......................((((.......((((((.....)))))).....))))....*********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 M023
head
 O001
Testis
 SRR902008
ovaries
 GSM343915
embryo
 SRR902009
testis
.......................................................TAAAAAATATCCTGAACAGAAAACGGC........................................................................................................................................................................ 27 0 1 4.00 4 2 1 1 0 0 0 0 0 0 0 0 0 0
............................TAACTTCGTAAACTTGTCAGCAAAACT................................................................................................................................................................................................... 27 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TCTAATAGTGTTAAGTGGTCGAAAC................................................................................................................................... 25 0 1 4.00 4 2 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................TGAACAGAAAACGGCAAAGAAAAATA............................................................................................................................................................. 26 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTCTAATAGTGTTAAGTGGTCGAAACT.................................................................................................................................. 27 0 1 3.00 3 1 0 0 0 0 0 2 0 0 0 0 0 0
................................................................................................................................................................................................................................TTGGAAACACAAAAGCTG........ 18 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0
....................................................................................................................................CTTAGTCCCTAGAGAGCC.................................................................................................... 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
................................................................TCCTGAACAGAAAACGGCAAAGAAAAA............................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTTTAATTGATTAGTCTTAGTAGT................................................. 24 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TGTTAAGTGGTCGAAACTATCTAAA........................................................................................................................... 25 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TTAATTTTAATTGATTAGTCTTAGTAGT................................................. 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TAATTGATTAGTCTTAGTAGTTTTAATT.......................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TAATTTCAGCATTGGCATAATTTGGA..................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................TCTAATAGTGTTAAGTGGTCGAAACT.................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................ATAGTGTTAAGTGGTCGAAAC................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................ATTCTAATGGTGTTAAGT............................................................................................................................................ 18 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................TAACTTCGTAGACTTGTCAGCAAAACT................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TATCCTGAACAGAAAACGGCAAAGAAAAA............................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CAGAAAACGGCAAAGAAAAATA............................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTTTAATTGATTAGTCTTAGTAGTT................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGTTTTAATTTCAGCATTGGCATAATT......................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................ATTATTTAACTTCGTAAACTTGT............................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................TATTTAACTTCGTAAACTTGT............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................ATATCCTGAACAGAAAACGGCAAAGAA.................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TAATTGATTAGTCTTAGTAGT................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................TTAAAAAATATCCTGAACAGAAAACGGC........................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTAATTGATTAGTCTTAGTAGC................................................. 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TAATTGATTAGTCTTAGTAGTTTTAAT........................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTAATTTTAATTGATTAGTCTTAGT.................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTTAATTTCAGCATTGGCATAATTT........................ 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................TTAACTTCGTAAACTTGTCAGCAAAACT................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................TATCTAAATAGCTCTTAGTCCCTAGA......................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................ACTTGTCAGCAAAACTTAAAAAATA.......................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTAATTGATTAGTCTTAGTAGTTTT.............................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TAAGTGGTCGAAACTATCTAAATAGCTC..................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CAGCATTGGCATAATTTGGAA.................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................AATTGATTAGTCTTAGTAGTTTTAAT........................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TGAACAGAAAACGGCAAAGAAAAA............................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TAATTTTAATTGATTAGTCTTAGTAGT................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CCCTAGAGTGCCATAGTTTTT........................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TCAGCATTGGCATAATTTGGAAACACA............... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................TATCCTGAACAGAAAACGGCAAAGAAAAAT.............................................................................................................................................................. 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTTGTTAATTTTAATTGATTAGTCTTA...................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGTCGAAACTATCTAAATAGCTCT.................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TATCCTGAACAGAAAACGGCAAAGAA.................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................TCCTGAACAGAAAACGGCAAAAAAAA................................................................................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AACAGAAAACGGCAAAGAAAAATA............................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................TTCTAATAGTGTTAAGTGGTCGAAA.................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................TAACTTCGTAAACTTGTCAGC......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTTAAATCAGCGTTTTGTTAATT....................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................TGGCATAATTTGGAAACACA............... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTCTAATAGTGTTAAGTGGTCGAAACTA................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................AACTTAAAAAATATCCTGAACA................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TAATTTGGAAACACAAAAGCTGTCACGCT. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTTTAATTGATTAGTCTTAGTATT................................................. 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTTAAATCAGCGTTTTGTTAA......................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTAATTGATTAGTCTTAGTAGTTTTAATT.......................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................AATTGATTAGTCTTAGTAGTTTTAATT.......................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TAGTTTCTAAATCGGCGTT................................................................................ 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................AGAACAGACAACGGCACAGAA.................................................................................................................................................................. 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AAAACGGCATAGAAAAA............................................................................................................................................................... 17 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTAATGTTAATCGATTAG........................................................... 18 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................AAATATCCTGAAAAGA............................................................................................................................................................................... 16 1 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

ACAAATATTTTAGTTATCGACTTAATAAATTGAAGCATTTGAACAGTCGTTTTGAATTTTTTATAGGACTTGTCTTTTGCCGTTTCTTTTTATAAGATTATCACAATTCACCAGCTTTGATAGATTTATCGAGAATCAGGGATCTCTCGGTATCAAAAATTTAGTCGCAAAACAATTAAAATTAACTAATCAGAATCATCAAAATTAAAGTCGTAACCGTATTAAACCTTTGTGTTTTCGACAGTGCGAT
***********************************************************************************************************************************.......................((((.......((((((.....)))))).....))))....******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
........................................................................................................................................CAGGCATCTCTCAGTATCA............................................................................................... 19 2 1 2.00 2 2 0 0 0 0 0
.....................................................................TTGTCTTTTGCCGTTTCTTTT................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................AAATTGAGTCGCAAACCA............................................................................ 18 2 1 1.00 1 0 0 1 0 0 0
........................................................................................................................................CAGGGATCTCTCGGTATCAAA............................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................AAAGGGATCTCTCAGTATCAA.............................................................................................. 21 3 5 0.20 1 0 1 0 0 0 0
............................................................................................................................................................AAATTTAGTTGCAAACCAAGT......................................................................... 21 3 6 0.17 1 0 0 1 0 0 0
.................................................................GGACTAGTCTTTCGGCGTTT..................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0
.............................TGGAAGCCTTTGAACAG............................................................................................................................................................................................................ 17 2 12 0.08 1 0 0 0 1 0 0
.............................................................................................................ACCAGCTTTGATTGA.............................................................................................................................. 15 1 13 0.08 1 0 0 1 0 0 0
.....................................................................TTGTCTTATGCCGTATCTTA................................................................................................................................................................. 20 3 16 0.06 1 0 0 0 0 1 0
................................................................................................................................................................................................................................GACATTTGTGTTTTCGA......... 17 2 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................................................................AAACTCAAAGTCGTAAC................................. 17 2 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:20952015-20952264 + dsi_11034 TGTTTAT---------------------AAAATCAATAGCTGAATTATTTAACTT-CGT---------------A---AACTTGTC--------AGCAAAAC-TTA-AA---AAATATCCT----GAA--CAGAAAACGGCAAAGAAA-AA-TATTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-ATCTAAATAGCTCTTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTTA--------------A--------------------------------A--TCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-AGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---CTA
droSec2 scaffold_11:1354620-1354869 + TGTTTAT---------------------AAAATCAATAGCTGAATTATTTAACTT-CGT---------------A---AACTTGTC--------AGCAAAAC-TTA-AA---AAATATCCT----GAA--CAGAAAACGGCAAAGAAA-AA-TATTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-ATCTAAATAGCTCTTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTTA--------------A--------------------------------A--TCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-AGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---CTA
dm3 chr3L:21430517-21430767 + TGTTTAT---------------------AAAATCAATAGCTTAATTATTTAACTT-CGT---------------A---AACTTGTC--------AGCAAAAC-TTAAAA---AAATATCCT----GAA--CAGAAAACGGCAAAGAAA-AA-TATTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-ATCTAATTAGCTCTTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTTA--------------A--------------------------------A--TCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-AGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---CTA
droEre2 scaffold_4784:21088363-21088615 + TGTTTAT---------------------AAAATTAATAGCTTAATTATTTAACTT-CGT---------------A---ATCTTATC--------CGAAAAAC-CTAAAA-CAAAATATCCT----GAA--CAGAAAACGGCAAACAAA-AA-AATTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-ATCTAATTAGCTCTTAG-----T-------------------------------------------------------------------CCCGAGAGA-GCCATAGTTTTAA--------------A--------------------------------A--TCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-AGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---CTA
droYak3 3L:19090390-19090642 - TGTTTAT---------------------AAAATTAATAGCTTAATTATTTAACTC-CGT---------------A---AACTTATC--------AGCAAAAC-TTA-AACAAAAATATCCT----GAA--CAGAATACGGCAAACAAA-AA-AATTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-ATCTAATTAGCTCTTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTAA--------------A--------------------------------A--TCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-AGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---ATG
droEug1 scf7180000409711:4595716-4595968 - TGTTTTTA-------------------AAAAATTCCTAGCTTAATTATTTAATTT-TGT---------------G---AACTTATC--------GAAAAATCCATA-AA---CAATACCCT----AAA--TAGAAAACGGAAAACAAA-AA-AATTCT-AATAGT-CTTAAGT--GGTCAAAACAACT-ATATAATT---TCGTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTAA--------------A--------------------------------T--GCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAATAGTTTTAATTTC-TGCA---TT---GGCATAATTTG-------GATA------CACAAAA-----------------GCTGT----CACG---CTA
droBia1 scf7180000302193:4609485-4609729 - TGTTTTA---------------------AAAATTCCTAGCTTAATTATTTAATTT-CCT---------------G---AACCTATC--------AACAAA-CCATA-AA---CAATACCCT------A--CAGAAAACGGCAAACAAA-AA-AATTCT-AATAGC-GTTAAGT--GGTCGAAA---CT-ATCTAACT---TCGTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTAA--------------A--------------------------------T--GCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-TGCA---TT---GGCGCAATTTG-------GAAA------CACAAAA-----------------GCTGT----TATG---CTG
droTak1 scf7180000415809:1014829-1015076 - TGTTTTG---------------------AAAATTCCTAGCTTAATTATTTAATTT-CGT---------------ATAACAACTATC--------AA-----CCATA-AA---CAATACCCC----AAA--CAGAAAACGGCAAACAAA-AA-AATTCT-AATAGC-GTTAAGT--GGTCGAAA---CT-ATCTAATT---TCGTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTAA--------------A--------------------------------T--GCAGC----G-TTTTGTT-AATTTTAATC-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-TGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----TACG-CTCTA
droEle1 scf7180000491193:1917916-1918165 - TGTTTTA---------------------AAAATTCCTAGCTTAATTATTTAATTT-TGT---------------A---AACTTATC--------AGAAAATCCATA-AA---CAATACCAT----AAA--CCGAAAACGGCAAACAAA-AATAATTTT-ATTAGT-GTTAAGT--GGTCGAAA---CT-ATATAATT---TTGTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTAA--------------A--------------------------------T--GCAGC----G-TTTTGTT-AATTTTAATTTGA------------------------------------TTAGTC-TTAGTAGTTTTAATTTT-TGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----TACG---CTA
droRho1 scf7180000780098:89861-90109 - TGTTTTA---------------------AAAATTCCTAGCTTAATTATTTAATTT-TGA---------------A---AACTTATC--------AGAAAATCCATA-CA---CAATACCAT----AAA--CAGAAAACGGCAAACAAA-AATAATTTT-AATAGT-TTTAAGA--GGCCGAAA---CT-ATCTAATT---TCGTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTAA--------------A--------------------------------T--GCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAATAGTTTTAATTTC-TGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----TACG---CTG
droFic1 scf7180000453929:564113-564348 + TGTTTTA---------------------AAAATTCCTAGTTTAATTATTTAATTT-CGT---------------T---AACTTATC--------AACGAAAC-T---------------AT----TTA--CAGAAAACGGCAA-CAAA-AA-AATTCT-AATAGC-GTTAAGT--GGTCGAAA---CT-ATCTAATT---TAGTAG-----T-------------------------------------------------------------------CCCTAGATA-GCCATAGTTTTAA--------------C--------------------------------T--GCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTTCTGCA---TT---GGCATAATTTG-------GAAA------CACTATA-----------------GCTGT----CCCG---CTG
droKik1 scf7180000302486:1269542-1269743 - TGTTTTAA--CG----------------GAAATTCCTAGCTTAATTATTTAATT-------------------------------------------------------------------------------------G----CAAAGAA-AATTCT-AATAGTCGGTAAGCGTGGTCGAAA---ATAACCTAATT---TCGTAG-----T-------------------------------------------------------------------CCCTAAAGA-GCCATAGTTTTAA--------------A--------------------------------AGAGCAGC----G-TTTTGTT-AATTTTAATT-GA----------------------------------TTTTAGTC-CTGGTAGTTTTAATTTC-TACAT-CCT---GGCATCGATTG-------GAGC-AC--CCACACAA-----------------G------------------
droAna3 scaffold_13337:10248391-10248683 + TGTTTTAAAACAGAGCAAAATAATATATACAATTCCTAGCTTAATTATTTAATTT-GAT---------------A---ATGTTATAAAGAGAAAAGAA---------AA---CACTACCCTAAATGAAAAGAGAATGTGGCAAGCAAATAA-AATTCT-AATAGT-TTTAAGC--GGTCGAAA---AT-ATACAATT---TTTTAACCCATT-------------------------------------------------------------------ACATAGAGA-GCCATAGTTTTTA--------------A--------------------------------A--GCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTCGAGCA---TTGGCGGCATACTTTG-------GAAACAAAAACACAAAA-----------------GCTGT----CAA-AGGCTA
droBip1 scf7180000396569:1115926-1116198 - TGTTTTTAAACG-------AAAATATA-TAAATTCCTAGCCTAATTATTTAATTT-TAT---------------ATAGAAATTATT----GAAGAGAAA---------A---CTCTACCCTAAATGAA--CAGAGAATGGCAAGCAAATAA-AATTCT-AATAGT-CGTAAGA--GGTCGAAA---CT-ATATAATT---T-TTAACCCGTA-------------------------------------------------------------------ACCTAGAGA-GCCATAGTTTGTA--------------A--------------------------------A--GCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-GGCA---TT---GGCATACTTTG-------GAAA----AACACAAAA-----------------GCTGT----CAA-CGGCTA
dp5 XR_group6:12776654-12776875 + TGTTTCA--------------------TTCAATTCCTAGCATAATTATTTAAAAT-GTT---------------A---ATCTTAAA-G-----GAGAAAAAC-CGA--------------T----AAT--GAGAAAACCGCTAACAAA-AA-AATTCT-TATAGT-TTTAAGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCAGA-GCCATAGTTTGTA--------------A--------------------------------T--GAAAC----G-TTTTGTT-AATATTAATT-GA------------------------------------TTAGTT-GTAATAGTTATAATTTC-TGCATAATT---GGCACAACTTG-------GAAA-------AGAAAA-----------------CCTGT----CACG---CTA
droPer2 scaffold_33:800701-800922 + TGTTTCA--------------------TTCAATTCCTAGCATAATTATTTAAAAT-GTT---------------A---ATCTTAAA-G-----GAGAAAAAC-CGA--------------T----AAT--GAGAAAACCGCTAACAAA-AA-AATTCT-TATAGT-TTTAAGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCAGA-GCCATAGTTTGTA--------------A--------------------------------T--GAAAC----G-TTTTGTT-AATATTAATT-GA------------------------------------TTAGTT-GTAATAGTTATAATTTC-TGCATAATT---GGCACAACTTG-------GAAA-------AGAAAA-----------------CCTGT----CACG---CTA
droWil2 scf2_1100000004768:410673-410858 + T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTAGTAGGAAAAGAACGAAAGA--------------------------------A--GCAGCAAATG-TTTTGTTTAATTTTATTT-TATATACTTATATATATATAAATAAATATATTTCATTTTTAGTTTGTAATAGTTT------A-AACA---TT---GGCATT---CAAAAAACCGAAC------AGCAACA---GCAGAAAGAGAA--AATGTCAAACGTG---TTA
droVir3 scaffold_13049:9619645-9619731 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-TTTTGTT-AATTTTAAA--AT-----------------------------CTAGTTTTTAGTC-GTTATAGTTTTATATTT-TGCAA-ATT---GGCACAATTTG-------AAAC----------GAA-----------------GCAAT----TACA---AAA
droMoj3 scaffold_6680:11145133-11145428 - TGTTTTT---------------------AA---TTCTAGCCTAATTATTTAAACATTG-----------------------TTCTA--------AGCAAACC-CCA-AT---ACACATC-T------------------------AAACGA-AATTTTCAAATAC-CTTAAGT--GGCAGCAGAAACA-ACCTATA----------------CTACATATATATCTCCCTATATATAAA-TATATATATATATATATATATACATAAATGCTATATAGACATTAGTTC-ACCTTAGTTCTTA--------------AAAACTTG-----------------------AAA--GT-GA----GTTTTTGTT-AATTTTAATT-CT-------------------------------AA-ATTTAGTC-GTTATAGTTTTATTTT---GAA---AA---AGAATCAATTA-------CAAA-AC--AAAC-AAA-----------------AATA-----TACA---AAA
droGri2 scaffold_15110:17394202-17394526 + TGTTTTT---------------------TAAATACCTAGCCTAATTATTTAAATTGTGTTTTAAGCCCCCTTTTTTAACACCCATT-------------------A-TACACACACATC-T------------------------AAACGA-AATTTT-AATTAC-CTTAAAT--GGCAGCAGAAGTA-ACCTAATA---ACGTAG-----TCTACAGATATA--------------AACTATA----------------------------CTATAGGCTTTAGTTGATCCTTAGTTTGTA--------------TAT-TTTGGCGGGCACCTTTTGGCGCCCATAAAA--G-TGA----G-TTTTGTT-AATTTTAAAT-AT-----------------------------ATAA-TTTTAGTC-GTTATAGTTTTATTCTA-CAAA---TT---GGCGCAATTTG-------AAAA------AA-AGCAATTATAAAAACAAAAAAACCAT----TCTGCTGATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGTTTAT---------------------AAAATCAATAGCTGAATTATTTAACTT-CGT---------------A---AACTTGTC--------AGCAAAAC-TTA-AA---AAATATCCT----GAA--CAGAAAACGGCAAAGAAA-AA-TATTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-ATCTAAATAGCTCTTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTTA--------------A--------------------------------A--TCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-AGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---CTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................TA-AA---AAATATCCT----GAA--CAGAAAACGGC...................................................................................................................................................................................................................................................................................................................................................................................................2714.00400000002110000000
.................................................TAACTT-CGT---------------A---AACTTGTC--------AGCAAAAC-T........................................................................................................................................................................................................................................................................................................................................................................................................................................2714.00400000002020000000
...........................................................................................................................................................TCT-AATAGT-GTTAAGT--GGTCGAAA---C.....................................................................................................................................................................................................................................................................................................................................................2514.00400000012010000000
........................................................................................................................T----GAA--CAGAAAACGGCAAAGAAA-AA-TA......................................................................................................................................................................................................................................................................................................................................................................................2613.00300000000030000000
..........................................................................................................................................................TTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-...................................................................................................................................................................................................................................................................................................................................................2713.00300200001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------GAAA------CACAAAA-----------------GCTG...............1812.00220000000000000000
.........................................................................................................................................................................................................CTTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCC............................................................................................................................................................................................................................................1812.00202000000000000000
.....................................................................................................................TCCT----GAA--CAGAAAACGGCAAAGAAA-AA-........................................................................................................................................................................................................................................................................................................................................................................................2712.00200000001010000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTTTAATT-GA------------------------------------TTAGTC-TTAGTAGT.............................................................................................2412.00200000010100000000
....................................................................................................................................................................T-GTTAAGT--GGTCGAAA---CT-ATCTAAA............................................................................................................................................................................................................................................................................................................................................2512.00200000001001000000
................................................................................................................................................................................................................................................................................................................................................................................TT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGT.............................................................................................2812.00200000001010000000
........................................................................................................................................................................................................................................................................................................................................................................................TAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATT......................................................................................2812.00200000002000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTC-AGCA---TT---GGCATAATTTG-------GA...................................................2612.00200000000200000000
...........................................................................................................................................................TCT-AATAGT-GTTAAGT--GGTCGAAA---CT-...................................................................................................................................................................................................................................................................................................................................................2612.00200000002000000000
................................................................................................................................................................ATAGT-GTTAAGT--GGTCGAAA---C.....................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...................................................................................................................TATCCT----GAA--CAGAAAACGGCAAAGAAA-AA-........................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
..................................................................................................................................CAGAAAACGGCAAAGAAA-AA-TA......................................................................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTT............................................................................................2511.00100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTTTAATTTC-AGCA---TT---GGCATAATT..............................................................2811.00100000010000000000
...........................................ATTATTTAACTT-CGT---------------A---AACTTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.............................................TATTTAACTT-CGT---------------A---AACTTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..................................................................................................................ATATCCT----GAA--CAGAAAACGGCAAAGAA.............................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................TAATT-GA------------------------------------TTAGTC-TTAGTAGT.............................................................................................2111.00100000000100000000
.......................................................................................................TTA-AA---AAATATCCT----GAA--CAGAAAACGGC...................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTAATT-GA------------------------------------TTAGTC-TTAGTAGC.............................................................................................2211.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAAT.......................................................................................2711.00100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................TT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGT................................................................................................2511.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATTTC-AGCA---TT---GGCATAATTT.............................................................2511.00100010000000000000
................................................TTAACTT-CGT---------------A---AACTTGTC--------AGCAAAAC-T........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
...........................................................................................................................................................................................T-ATCTAAATAGCTCTTAG-----T-------------------------------------------------------------------CCCTAGA..................................................................................................................................................................................................................................................2611.00100000001000000000
...............................................................................ACTTGTC--------AGCAAAAC-TTA-AA---AAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTT..........................................................................................2511.00100000001000000000
........................................................................................................................................................................TAAGT--GGTCGAAA---CT-ATCTAAATAGCTC......................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AGCA---TT---GGCATAATTTG-------GAA..................................................2111.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAAT.......................................................................................2611.00100000001000000000
........................................................................................................................T----GAA--CAGAAAACGGCAAAGAAA-AA-........................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................T-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGT.............................................................................................2711.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-AGCA---TT---GGCATAATTTG-------GAAA------CACA.......................................2711.00100000000001000000
...................................................................................................................TATCCT----GAA--CAGAAAACGGCAAAGAAA-AA-T.......................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................TTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTA..................................................................................................2711.00100000001000000000
............................................................................................................................................................................T--GGTCGAAA---CT-ATCTAAATAGCTCT.....................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
...................................................................................................................TATCCT----GAA--CAGAAAACGGCAAAGAA.............................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
..............................................................................................................................AA--CAGAAAACGGCAAAGAAA-AA-TA......................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
..........................................................................................................................................................TTCT-AATAGT-GTTAAGT--GGTCGAAA---......................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.................................................TAACTT-CGT---------------A---AACTTGTC--------AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
..........................................................................................................................................................................................................................................................................................................TTTA--------------A--------------------------------A--TCAGC----G-TTTTGTT-AATT.........................................................................................................................................................2311.00100000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GGCATAATTTG-------GAAA------CACA.......................................2011.00100000000100000000
..........................................................................................................................................................TTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-A..................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
...................................................................................................AAC-TTA-AA---AAATATCCT----GAA--CA............................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---CT.2911.00100000001000000000
..........................................................................................................................................................................................................................................................................................................TTTA--------------A--------------------------------A--TCAGC----G-TTTTGTT-AA...........................................................................................................................................................2111.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATT......................................................................................2911.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATT......................................................................................2711.00100000001000000000
droSec2
TGTTTAT---------------------AAAATCAATAGCTGAATTATTTAACTT-CGT---------------A---AACTTGTC--------AGCAAAAC-TTA-AA---AAATATCCT----GAA--CAGAAAACGGCAAAGAAA-AA-TATTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-ATCTAAATAGCTCTTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTTA--------------A--------------------------------A--TCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-AGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---CTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................CT-AATAGT-GTTAAGT--GGTCG............................................................................................................................................................................................................................................................................................................................................................2011.0010100
........................................................................................................................................................................................................TCTTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCAT..........................................................................................................................................................................................................................................2111.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTG-------GAAA------CACAAAA-----------------GCTGT----..........2211.0010100
..........................................................................................................................................................................................................................................................................................................TTTA--------------A--------------------------------A--TCAGC----G-TTTTGTT-.............................................................................................................................................................1911.0011000
....................................................................................................................ATCCT----GAA--CAGAAAACGGCAAAGAA.............................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.........................................................................................................................................................................................................................................................................................CTAGAGA-GCCATAGTTTTT...................................................................................................................................................................................................................................1911.0010010
...........................................................................................................................................................TCT-AATAGT-GTTAAGT--GGTCGAAA---CT-...................................................................................................................................................................................................................................................................................................................................................2611.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................ATT-GA------------------------------------TTAGTC-TTAGTAGT.............................................................................................1911.0010010
.....................................................TT-CGT---------------A---AACTTGTC--------AGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
TGTTTAT---------------------AAAATCAATAGCTTAATTATTTAACTT-CGT---------------A---AACTTGTC--------AGCAAAAC-TTAAAA---AAATATCCT----GAA--CAGAAAACGGCAAAGAAA-AA-TATTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-ATCTAATTAGCTCTTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTTA--------------A--------------------------------A--TCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-AGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---CTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................TAAGT--GGTCGAAA---CT-ATCTAATTAGC........................................................................................................................................................................................................................................................................................................................................2619.0090000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000101000000000000000200000000
.......................................................................................................................................................................TTAAGT--GGTCGAAA---CT-ATCTAATTAGC........................................................................................................................................................................................................................................................................................................................................2718.0080000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000310000000000000000000000000
...................................................................................................................................................................................................................T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTTA--------------A--------------------------------A--................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000110100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTTC-AGCA---TT---GGCATAATTTG-------GA...................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TAGT-GTTAAGT--GGTCGAAA---CT-ATC................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.......................................................................................................................................................................TTAAGT--GGTCGAAA---CT-ATCTAATTAG.........................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---C..2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................TCGAAA---CT-ATCTAATTAGCT.......................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATT......................................................................................2515.0050000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---C..2615.0050000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TAATT-GA------------------------------------TTAGTC-TTAGTAGT.............................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---C..2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................TATCCT----GAA--CAGAAAACGGCAAAGAA.............................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TCTTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTT......................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-AGCA---TT---GGCATAATTTG-------GAAA------CACA.......................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTA.........................................................................................2513.0030000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TCT-AATAGT-GTTAAGT--GGTCG............................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000101000000000000000000000
.................................................TAACTT-CGT---------------A---AACTTGTC--------AGCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATAGTTTTTA--------------A--------------------------------A--TCAGC----G-TTTTGT...............................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTC-AGCA---TT---GGCATAATTTG-------GA...................................................2613.0030000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GC.................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-------GAAA------CACAAAA-----------------GCTGT----C.........2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTAATT-GA------------------------------------TTAGTC-TTAGTAGTTT...........................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTTA--------------A--------------------------------...................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTG-------GAAA------CACAAAA-----------------GCTGT----C.........2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................CT-AATAGT-GTTAAGT--GGTCGAAA---CT-...................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTTTAATT-GA------------------------------------TTAGTC-TTAGTAGT.............................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TCTAATTAGCTCTTAG-----T-------------------------------------------------------------------CCCTAGAGA-...............................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATTTC-AGCA---TT---GGCATAATTTG-------GA...................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTT...........................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................GTC--------AGCAAAAC-TTAAAA---AAAT............................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TAGTTTTTA--------------A--------------------------------A--TCAGC----G-TTTTGTT-AA...........................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---TT---GGCATAATTTG-------GAAA------CACA.......................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TTATTTAACTT-CGT---------------A---AACTTGTC--------AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATAATTTG-------GAAA------CACAAAA-----------------GCTG...............2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTAATT-GA------------------------------------TTAGTC-TTAGTAGTT............................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTT...................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................................................................................................................................ATCTAATTAGCTCTTAG-----T-------------------------------------------------------------------CCCTAGAGA-...............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTAATTTC-AGCA---TT---GGC....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTAGTTTTAATTTC-AGCA---TT---GGCATA.................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AATT-GA------------------------------------TTAGTC-TTAGTAGTTTT..........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTT.....................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................T-GTTAAGT--GGTCGAAA---CT-ATCTAA.............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---TT---GGCATAATTTG-------GAAG------...........................................2111.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................T-AATAGT-GTTAAGT--GGTCGAAA---CT-A..................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................ATAGT-GTTAAGT--GGTCGAAA---CT-...................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................AG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTTA--------------A--------------------------------...................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTTTAATTTC-AGCA---TT---GGCATA.................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AGC----G-TTTTGTT-AATTTTT......................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droEre2
TGTTTAT---------------------AAAATTAATAGCTTAATTATTTAACTT-CGT---------------A---ATCTTATC--------CGAAAAAC-CTAAAA-CAAAATATCCT----GAA--CAGAAAACGGCAAACAAA-AA-AATTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-ATCTAATTAGCTCTTAG-----T-------------------------------------------------------------------CCCGAGAGA-GCCATAGTTTTAA--------------A--------------------------------A--TCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-AGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---CTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................T----GAA--CAGAAAACGGCAAACAAA-AA-AA......................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..........................................................................................................................................................................................................................................................................................................TTAA--------------A--------------------------------A--TCAGC----G-TTTTGTT-.............................................................................................................................................................1911.0010100000
..................................................................................................................................................................................................................................................................................................CCATAGTTTTAA--------------A--------------------------------A--TCAGC----G-TTTTGT...............................................................................................................................................................2611.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTAGTTTTAATTTC-AGCA---TT---GGCA...................................................................2611.0011000000
..............................................................................................................................................................................................................................................................................................GA-GCCATAGTTTTAA--------------A--------------------------------A--TC..............................................................................................................................................................................1911.0010100000
.................................................TAACTT-CGT---------------A---ATCTTATC--------CGAAAAAC-C........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
................................................................................................................................................................................................TAATTAGCTCTTAG-----T-------------------------------------------------------------------CCCGAGAGA-...............................................................................................................................................................................................................................................2411.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTAATTTC-AGCA---TT---GG.....................................................................2011.0010000010
droYak3
TGTTTAT---------------------AAAATTAATAGCTTAATTATTTAACTC-CGT---------------A---AACTTATC--------AGCAAAAC-TTA-AACAAAAATATCCT----GAA--CAGAATACGGCAAACAAA-AA-AATTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-ATCTAATTAGCTCTTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTAA--------------A--------------------------------A--TCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-AGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----CACG---ATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................ATTAGCTCTTAG-----T-------------------------------------------------------------------CCCTAG...................................................................................................................................................................................................................................................1920.50100100000000
......................................................................................................................................................................GTTAAGT--GGTCGAAA---CT-AT.................................................................................................................................................................................................................................................................................................................................................1920.50100000010000
................................................................................................................................................................ATAGT-GTTAAGT--GGTCGAAA---CT-...................................................................................................................................................................................................................................................................................................................................................2220.50100100000000
........................................................................................................................................................AATTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-...................................................................................................................................................................................................................................................................................................................................................2920.50100000010000
...............................................................................................................................................................AATAGT-GTTAAGT--GGTCGAAA---CT-...................................................................................................................................................................................................................................................................................................................................................2320.50100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................GA------------------------------------TTAGTC-TTAGTAGTTTTAA........................................................................................2120.50101000000000
.............................................................................................................................................................................................ATCTAATTAGCTCTTAG-----T-------------------------------------------------------------------CCCTAG...................................................................................................................................................................................................................................................2420.50101000000000
.............................................................................................................................................................................................................................................................................................................................................................A--TCAGC----G-TTTTGTT-AATTTTAATT-..................................................................................................................................................2420.50100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------...................2520.50100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATT-GA------------------------------------TTAGTC-TTAGTAGT.............................................................................................1920.50100000010000
.........................................................................................................................................................ATTCT-AATAGT-GTTAAGT--GGTCGAAA---CT-...................................................................................................................................................................................................................................................................................................................................................2820.50100100000000
..................................................................................................................................................................AGT-GTTAAGT--GGTCGAAA---CT-...................................................................................................................................................................................................................................................................................................................................................2020.50100100000000
droEug1
TGTTTTTA-------------------AAAAATTCCTAGCTTAATTATTTAATTT-TGT---------------G---AACTTATC--------GAAAAATCCATA-AA---CAATACCCT----AAA--TAGAAAACGGAAAACAAA-AA-AATTCT-AATAGT-CTTAAGT--GGTCAAAACAACT-ATATAATT---TCGTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTAA--------------A--------------------------------T--GCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAATAGTTTTAATTTC-TGCA---TT---GGCATAATTTG-------GATA------CACAAAA-----------------GCTGT----CACG---CTASizeHit CountTotal NormTotal
No Reads
droBia1
TGTTTTA---------------------AAAATTCCTAGCTTAATTATTTAATTT-CCT---------------G---AACCTATC--------AACAAA-CCATA-AA---CAATACCCT------A--CAGAAAACGGCAAACAAA-AA-AATTCT-AATAGC-GTTAAGT--GGTCGAAA---CT-ATCTAACT---TCGTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTAA--------------A--------------------------------T--GCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-TGCA---TT---GGCGCAATTTG-------GAAA------CACAAAA-----------------GCTGT----TATG---CTGSizeHit CountTotal NormTotal
No Reads
droTak1
TGTTTTG---------------------AAAATTCCTAGCTTAATTATTTAATTT-CGT---------------ATAACAACTATC--------AA-----CCATA-AA---CAATACCCC----AAA--CAGAAAACGGCAAACAAA-AA-AATTCT-AATAGC-GTTAAGT--GGTCGAAA---CT-ATCTAATT---TCGTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTAA--------------A--------------------------------T--GCAGC----G-TTTTGTT-AATTTTAATC-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-TGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----TACG-CTCTASizeHit CountTotal NormTotal
No Reads
droEle1
TGTTTTA---------------------AAAATTCCTAGCTTAATTATTTAATTT-TGT---------------A---AACTTATC--------AGAAAATCCATA-AA---CAATACCAT----AAA--CCGAAAACGGCAAACAAA-AATAATTTT-ATTAGT-GTTAAGT--GGTCGAAA---CT-ATATAATT---TTGTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTAA--------------A--------------------------------T--GCAGC----G-TTTTGTT-AATTTTAATTTGA------------------------------------TTAGTC-TTAGTAGTTTTAATTTT-TGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----TACG---CTASizeHit CountTotal NormTotal
No Reads
droRho1
TGTTTTA---------------------AAAATTCCTAGCTTAATTATTTAATTT-TGA---------------A---AACTTATC--------AGAAAATCCATA-CA---CAATACCAT----AAA--CAGAAAACGGCAAACAAA-AATAATTTT-AATAGT-TTTAAGA--GGCCGAAA---CT-ATCTAATT---TCGTAG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTTTTAA--------------A--------------------------------T--GCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAATAGTTTTAATTTC-TGCA---TT---GGCATAATTTG-------GAAA------CACAAAA-----------------GCTGT----TACG---CTGSizeHit CountTotal NormTotal
No Reads
droFic1
TGTTTTA---------------------AAAATTCCTAGTTTAATTATTTAATTT-CGT---------------T---AACTTATC--------AACGAAAC-T---------------AT----TTA--CAGAAAACGGCAA-CAAA-AA-AATTCT-AATAGC-GTTAAGT--GGTCGAAA---CT-ATCTAATT---TAGTAG-----T-------------------------------------------------------------------CCCTAGATA-GCCATAGTTTTAA--------------C--------------------------------T--GCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTTCTGCA---TT---GGCATAATTTG-------GAAA------CACTATA-----------------GCTGT----CCCG---CTGSizeHit CountTotal NormTotal
No Reads
droKik1
TGTTTTAA--CG----------------GAAATTCCTAGCTTAATTATTTAATT-------------------------------------------------------------------------------------G----CAAAGAA-AATTCT-AATAGTCGGTAAGCGTGGTCGAAA---ATAACCTAATT---TCGTAG-----T-------------------------------------------------------------------CCCTAAAGA-GCCATAGTTTTAA--------------A--------------------------------AGAGCAGC----G-TTTTGTT-AATTTTAATT-GA----------------------------------TTTTAGTC-CTGGTAGTTTTAATTTC-TACAT-CCT---GGCATCGATTG-------GAGC-AC--CCACACAA-----------------G------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TGTTTTAAAACAGAGCAAAATAATATATACAATTCCTAGCTTAATTATTTAATTT-GAT---------------A---ATGTTATAAAGAGAAAAGAA---------AA---CACTACCCTAAATGAAAAGAGAATGTGGCAAGCAAATAA-AATTCT-AATAGT-TTTAAGC--GGTCGAAA---AT-ATACAATT---TTTTAACCCATT-------------------------------------------------------------------ACATAGAGA-GCCATAGTTTTTA--------------A--------------------------------A--GCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTCGAGCA---TTGGCGGCATACTTTG-------GAAACAAAAACACAAAA-----------------GCTGT----CAA-AGGCTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................AATAGT-TTTAAGC--GGTCGAAA---......................................................................................................................................................................................................................................................................................................................................................2111.001000001
.......................TATATACAATTCCTAGCTTAATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..............................................................................ATGTTATAAAGAGAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
....................................................................................................................................................................................................T---TTTTAACCCATT-------------------------------------------------------------------ACATAGAGA-GC.............................................................................................................................................................................................................................................2411.001000010
.............................CAATTCCTAGCTTAATTATTTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.........................................................................................................................................................................................................................................................................................ATAGAGA-GCCATAGTTTTTA--------------....................................................................................................................................................................................................................2011.001000010
.GTTTTAAAACAGAGCAAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................AAATGAAAAGAGAATGTGG....................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
.............................................................................................................................................................................................ATACAATT---TTTTAACCCATT-------------------------------------------------------------------.........................................................................................................................................................................................................................................................2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAAAA-----------------GCTGT----CAA-AGGCC.2111.001010000
.............................................................................................................................................................................................ATACAATT---TTTTAACCCATT-------------------------------------------------------------------A........................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCA---TTGGCGGCATACTTTG-------GA...................................................2411.001100000
.........................................................................................................................................................ATTCT-AATAGT-TTTAAGC--GGTCGAAA---......................................................................................................................................................................................................................................................................................................................................................2611.001000010
...........................................................................................................................................................................................................TAACCCATT-------------------------------------------------------------------ACATAGAGA-GC.............................................................................................................................................................................................................................................2011.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTTCGAGCA---TTGGCGGC....................................................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................TTTAATT-GA------------------------------------TTAGTC-TTAGTAGC.............................................................................................2311.001010000
...............................................................................................................................................................................................................CCATT-------------------------------------------------------------------ACATAGAGA-GCCATA.........................................................................................................................................................................................................................................2011.001000001
...............................ATTCCTAGCTTAATTATTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
TGTTTTTAAACG-------AAAATATA-TAAATTCCTAGCCTAATTATTTAATTT-TAT---------------ATAGAAATTATT----GAAGAGAAA---------A---CTCTACCCTAAATGAA--CAGAGAATGGCAAGCAAATAA-AATTCT-AATAGT-CGTAAGA--GGTCGAAA---CT-ATATAATT---T-TTAACCCGTA-------------------------------------------------------------------ACCTAGAGA-GCCATAGTTTGTA--------------A--------------------------------A--GCAGC----G-TTTTGTT-AATTTTAATT-GA------------------------------------TTAGTC-TTAGTAGTTTTAATTTC-GGCA---TT---GGCATACTTTG-------GAAA----AACACAAAA-----------------GCTGT----CAA-CGGCTASizeHit CountTotal NormTotal
No Reads
dp5
TGTTTCA--------------------TTCAATTCCTAGCATAATTATTTAAAAT-GTT---------------A---ATCTTAAA-G-----GAGAAAAAC-CGA--------------T----AAT--GAGAAAACCGCTAACAAA-AA-AATTCT-TATAGT-TTTAAGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCAGA-GCCATAGTTTGTA--------------A--------------------------------T--GAAAC----G-TTTTGTT-AATATTAATT-GA------------------------------------TTAGTT-GTAATAGTTATAATTTC-TGCATAATT---GGCACAACTTG-------GAAA-------AGAAAA-----------------CCTGT----CACG---CTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................TTTAAGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCAGA-...............................................................................................................................................................................................................................................2115.0050000000500
..........................................................................................................................................................................AGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCAGA-GCC............................................................................................................................................................................................................................................2013.0031200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATT---GGCACAACTTG-------GAA..................................................2112.0020200000000
.........................................................................................................................................................................AAGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCAGA-GC.............................................................................................................................................................................................................................................2012.0020000000020
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTC-TGCATAATT---GGCAC..................................................................2112.0020200000000
......A--------------------TTCAATTCCTAGCATAATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................TAGCATAATTATTTAAAAT-GTT---------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................TAATT-GA------------------------------------TTAGTT-GTAATAGTT............................................................................................2211.0010000000001
....................................................................................................AC-CGA--------------T----AAT--GAGAAAACCGCT..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................TT-AATATTAATT-GA------------------------------------TTAGTT-G....................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-TGCATAATT---GGCACAACTT.............................................................2111.0010100000000
...................................................AAAT-GTT---------------A---ATCTTAAA-G-----GAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................AAAAT-GTT---------------A---ATCTTAAA-G-----GAG................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATAATT---GGCACAACTTG-------GA...................................................2211.0010100000000
...................................................................................................................................................................GT-TTTAAGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCA..................................................................................................................................................................................................................................................2111.0010000001000
.....................................................................................................C-CGA--------------T----AAT--GAGAAAACCGCTA.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------GAAA-------AGAAAA-----------------CCTGT----CACG---...2111.0010100000000
..........................................................................................................................................................................................................................................................................................TGCAGA-GCCATAGTTTGTA--------------A--------------------------------T--................................................................................................................................................................................2111.0010000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GGCACAACTTG-------GAAA-------AGAAA.....................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTTC-TGCATAATT---GGCAC..................................................................2311.0010010000000
........................................................................................................................................................................TAAGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCAGA-GC.............................................................................................................................................................................................................................................2111.0010000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTC-TGCATAATT---GGCACA.................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................TGCAGA-GCCATAGTTTGTA--------------A--------------------------------T--GAAA............................................................................................................................................................................2511.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTG-------GAAA-------AGAAAA-----------------CCTG...............2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTC-TGCATAATT---GGCACAACTT.............................................................2711.0010010000000
................................................................................................................................................................ATAGT-TTTAAGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCAGA-GC.............................................................................................................................................................................................................................................2811.0010100000000
.................................................................................................................................................................................TCGAAA---------------------------------------------------------------------------------------------------TGCAGA-GCCATAGTT......................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------GAAA-------AGAAAA-----------------CCTGT----CAC.......2011.0010100000000
..............................................................................................AGAAAAAC-CGA--------------T----AAT--GAGAAAACC.....................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATT-GA------------------------------------TTAGTT-GTAATAGTT............................................................................................2011.0010100000000
......................................................................................................................................................................................A---------------------------------------------------------------------------------------------------TGCAGA-GCCATAGTTTGTA--------------A--------------------------------...................................................................................................................................................................................2111.0010000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATT---GGCACAACTTG-------GAAA-------..........................................2111.0010100000000
.............................................................................................................................................................T-TATAGT-TTTAAGA--GGTCGAAA---------------------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................2211.0010000001000
....................................................................................................................................................................T-TTTAAGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCAGA-GC.............................................................................................................................................................................................................................................2411.0010000000100
........................................................................................................................................................................................................................................................................................................TTTGTA--------------A--------------------------------T--GAAAC----G-TTTTGTT-AA...........................................................................................................................................................2311.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTC-TGCATAATT---GGC....................................................................2011.0010100000000
droPer2
TGTTTCA--------------------TTCAATTCCTAGCATAATTATTTAAAAT-GTT---------------A---ATCTTAAA-G-----GAGAAAAAC-CGA--------------T----AAT--GAGAAAACCGCTAACAAA-AA-AATTCT-TATAGT-TTTAAGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCAGA-GCCATAGTTTGTA--------------A--------------------------------T--GAAAC----G-TTTTGTT-AATATTAATT-GA------------------------------------TTAGTT-GTAATAGTTATAATTTC-TGCATAATT---GGCACAACTTG-------GAAA-------AGAAAA-----------------CCTGT----CACG---CTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................TTAAGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCAGA-GC.............................................................................................................................................................................................................................................2212.002200000
......................................................................................................................................................................TTTAAGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCAG.................................................................................................................................................................................................................................................2011.001100000
................................................................................CTTAAA-G-----GAGAAAAAC-CGA--------------T----A..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.........................................................................................................................................................................AAGA--GGTCGAAA---------------------------------------------------------------------------------------------------TGCAGA-GC.............................................................................................................................................................................................................................................2011.001010000
droWil2
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----T-------------------------------------------------------------------CCCTAGAGA-GCCATAGTAGTAGGAAAAGAACGAAAGA--------------------------------A--GCAGCAAATG-TTTTGTTTAATTTTATTT-TATATACTTATATATATATAAATAAATATATTTCATTTTTAGTTTGTAATAGTTT------A-AACA---TT---GGCATT---CAAAAAACCGAAC------AGCAACA---GCAGAAAGAGAA--AATGTCAAACGTG---TTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................GA-GCCATAGTAGTAGGAAAAG............................................................................................................................................................................................................................2111.00100010
.....................................................................................................................................................................................................................................................................................................................ACGAAAGA--------------------------------A--GCAGCAAATG-TTT..................................................................................................................................................................2211.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATT---CAAAAAACCGAAC------AGCAACA---.................................2411.00100010
..............................................................................................................................................................................................................................................................................................GA-GCCATAGTAGTAGGAAAA.............................................................................................................................................................................................................................2011.00100100
...................................................................................................................................................................................................................................................................................................CATAGTAGTAGGAAAAGA...........................................................................................................................................................................................................................1811.00100010
.............................................................................................................................................................................................................................................................................................AGA-GCCATAGTAGTAGGAAAA.............................................................................................................................................................................................................................2111.00101000
droVir3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-TTTTGTT-AATTTTAAA--AT-----------------------------CTAGTTTTTAGTC-GTTATAGTTTTATATTT-TGCAA-ATT---GGCACAATTTG-------AAAC----------GAA-----------------GCAAT----TACA---AAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTATATTT-TGCAA-ATT---GGCACA.................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGTC-GTTATAGTTTTATAT......................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------AAAC----------GAA-----------------GCAAT----TACA---AAA2011.001000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA-ATT---GGCACAATTTG-------AAAC----------GAA-----------------GC.................2711.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATTT-TGCAA-ATT---GGCAC..................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-ATT---GGCACAATTTG-------AAAC----------GAA-----------------GC.................2611.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------AAAC----------GAA-----------------GCAAT----TACA---AA.1911.001000000000000000000000010000000000000000000000000000000000000000
droMoj3
TGTTTTT---------------------AA---TTCTAGCCTAATTATTTAAACATTG-----------------------TTCTA--------AGCAAACC-CCA-AT---ACACATC-T------------------------AAACGA-AATTTTCAAATAC-CTTAAGT--GGCAGCAGAAACA-ACCTATA----------------CTACATATATATCTCCCTATATATAAA-TATATATATATATATATATATACATAAATGCTATATAGACATTAGTTC-ACCTTAGTTCTTA--------------AAAACTTG-----------------------AAA--GT-GA----GTTTTTGTT-AATTTTAATT-CT-------------------------------AA-ATTTAGTC-GTTATAGTTTTATTTT---GAA---AA---AGAATCAATTA-------CAAA-AC--AAAC-AAA-----------------AATA-----TACA---AAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................CTACATATATATCTCCCTAT........................................................................................................................................................................................................................................................................................................2011.001100000
..........................................................................................................................................................................................CA-ACCTATA----------------CTACATATATATCTCCC...........................................................................................................................................................................................................................................................................................................2611.001100000
....................................................................................................................................................CGA-AATTTTCAAATAC-CTTAAGT--GGCAGC...........................................................................................................................................................................................................................................................................................................................................................2911.001000010
...........................................................................................................................................................................................A-ACCTATA----------------CTACATATATATCTCCCTAT........................................................................................................................................................................................................................................................................................................2811.001100000
...............................................................................................................................................................................................................................................................................TATATAGACATTAGTTC-ACCTTAGTTC.....................................................................................................................................................................................................................................2711.001100000
.GTTTTT---------------------AA---TTCTAGCCTAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................ATT-CT-------------------------------AA-ATTTAGTC-GTTATAGT.............................................................................................2311.001100000
............................AA---TTCTAGCCTAATTATTTAAACATTG-----------------------TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
droGri2
TGTTTTT---------------------TAAATACCTAGCCTAATTATTTAAATTGTGTTTTAAGCCCCCTTTTTTAACACCCATT-------------------A-TACACACACATC-T------------------------AAACGA-AATTTT-AATTAC-CTTAAAT--GGCAGCAGAAGTA-ACCTAATA---ACGTAG-----TCTACAGATATA--------------AACTATA----------------------------CTATAGGCTTTAGTTGATCCTTAGTTTGTA--------------TAT-TTTGGCGGGCACCTTTTGGCGCCCATAAAA--G-TGA----G-TTTTGTT-AATTTTAAAT-AT-----------------------------ATAA-TTTTAGTC-GTTATAGTTTTATTCTA-CAAA---TT---GGCGCAATTTG-------AAAA------AA-AGCAATTATAAAAACAAAAAAACCAT----TCTGCTGATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................AAT--GGCAGCAGAAGTA-ACCTAATA---........................................................................................................................................................................................................................................................................................................................................2411.00110

Generated: 05/18/2015 at 10:58 AM