ID:

dsi_11027

Coordinate:

3r:4197814-4197963 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-37.1	-37.1	-37.1

Flybase annnotation

Antisense to CDS [3r_4197966_4198107_-]; exon [3r_4197714_4197813_+]; CDS [3r_4197714_4197813_+]; Antisense to three_prime_UTR [3r_4197837_4197965_-]; Antisense to exon [3r_4197837_4198107_-]; intron [3r_4197814_4201350_+]

No Repeatable elements found

mature

star

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GTCTCCGTGGCAGCCTCGGTCTACAGCCTGATTGCCGTTTCCCTGGACAGGTAAGTTGAAAACACTCCAATTACGTGGCTATGAACTTTTATTGTGGGATCGTGGTTGTGGTGCTCAGGGAGGGATTGGTCTGGGTCTGGTGGGGATCGGGAACGGGATCGGGAGCGGGAAAGGTATTGAAAGTGGACCGTATTCACTGCACTTAATGATGCACGACGACGGCGGGGGCGGCATGATGCACTGGAACCAA ************************************************............((((.((((((((...((((((.......))))))...)))))))).)))).((((.......(((.(((.(((((.((...........)).))))).))).)))........)))).((((((.....))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M025 embryo	M024 male body	SRR902009 testis
..................................................................................................................................CTGGGTCGGGTGGGGA........................................................................................................	16	1	1	2.00	2	2	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGGACCGTATTCACTGCACTTAATGA.........................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................AATGATGGACGAAGACGACGGGGG......................	24	3	1	1.00	1	0	0	1	0	0	0	0	0
............................................................................................................................ATTGGTCTCGGTCTGGTGC...........................................................................................................	19	2	1	1.00	1	0	0	0	1	0	0	0	0
.........................................................................................................................................................................AAAATTTTTGAAAGTGGACCG............................................................	21	3	5	0.40	2	0	0	0	0	0	2	0	0
..............................ATTGCCGAGTCGCTGGACAGG.......................................................................................................................................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................ACGACAGCGGGGGCGCCA.................	18	2	3	0.33	1	0	0	0	0	1	0	0	0
...........................................................................................................................GATTGGTCTCGGTCTG...............................................................................................................	16	1	3	0.33	1	1	0	0	0	0	0	0	0
......................................................................................................................................................GAACGGGATCGGGAGC....................................................................................	16	0	3	0.33	1	0	1	0	0	0	0	0	0
............GCCGCGGTATACAGACTGA...........................................................................................................................................................................................................................	19	3	5	0.20	1	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................GACGGCGCGGGCGGCCTG...............	18	2	7	0.14	1	0	0	0	0	1	0	0	0
.........GCAGGTTCGGTCTAGAGC...............................................................................................................................................................................................................................	18	3	17	0.12	2	0	0	0	0	2	0	0	0
...........................................................................................................................................GAGAGGATCGTGAACGGGAT...........................................................................................	20	3	9	0.11	1	0	0	0	0	0	0	0	1
......................................................................................................................GGAGGGATTTGTCTGG....................................................................................................................	16	1	11	0.09	1	1	0	0	0	0	0	0	0
............GCCTCGGTATACAGAC..............................................................................................................................................................................................................................	16	2	15	0.07	1	0	0	1	0	0	0	0	0
...................................................TAAGTTGACAACACT........................................................................................................................................................................................	15	1	19	0.05	1	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................CGGGGGCGCCATGATT............	16	2	20	0.05	1	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................GACGGCGCGGGCGGCCCG...............	18	3	20	0.05	1	0	0	0	0	1	0	0	0
........................................................................................................................................CTGATGGGGATCGGG...................................................................................................	15	1	20	0.05	1	1	0	0	0	0	0	0	0
....................................................................................................................................................GGGAACCGGATCGGG.......................................................................................	15	1	20	0.05	1	1	0	0	0	0	0	0	0
................................................................................ATGAACTTTTACTGT...........................................................................................................................................................	15	1	20	0.05	1	0	0	1	0	0	0	0	0
..........................................................................GTGGCGATGAACTGTTATC.............................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0
..CTCCGTGGTAGGCTCG........................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	1	0	0	0

Anti-sense strand reads

-------------------------------------------------------------------------################################################################################################################################################################################# CAGAGGCACCGTCGGAGCCAGATGTCGGACTAACGGCAAAGGGACCTGTCCATTCAACTTTTGTGAGGTTAATGCACCGATACTTGAAAATAACACCCTAGCACCAACACCACGAGTCCCTCCCTAACCAGACCCAGACCACCCCTAGCCCTTGCCCTAGCCCTCGCCCTTTCCATAACTTTCACCTGGCATAAGTGACGTGAATTACTACGTGCTGCTGCCGCCCCCGCCGTACTACGTGACCTTGGTT ************************************************............((((.((((((((...((((((.......))))))...)))))))).)))).((((.......(((.(((.(((((.((...........)).))))).))).)))........)))).((((((.....))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
...................................................................................................................................................GCCCTTGCCCTAGCCCTC.....................................................................................	18	0	2	1.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................TGGCATAAGGGACGT.................................................	15	1	6	0.17	1	0	1	0	0	0	0
........................................................................................ACTGACATCCTAGCACCA................................................................................................................................................	18	3	20	0.10	2	0	0	0	2	0	0
........................................................................................................................................................................................................................GCTGCAGCCCCCGCC...................	15	1	15	0.07	1	0	0	1	0	0	0
............................................................................................................ACCACGCGACCCTCCCT.............................................................................................................................	17	2	15	0.07	1	0	0	1	0	0	0
............................................................................................................ACCGCGTGTGCCTCCCTAA...........................................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0
............................................................................................................ACCACGAGTACCTGCCTTA...........................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

Generated: 04/23/2015 at 10:49 PM