ID:

dsi_10980

 Coordinate:

3l:16357646-16357795 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-18.4 -18.3 -17.9 -17.8

Flybase annnotation

CDS [3l_16357839_16358448_+]; five_prime_UTR [3l_16357796_16357838_+]; exon [3l_16357796_16358448_+]; intron [3l_16350548_16357795_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAAGCGGCAGCTAGAAGCATTTCAGCCATCGATCGTGATAGATCCTAGATCGCAGATCCCTAAAAAAGTCACAAGCAACCAGAACCAAAGTGTAACTTAGTTATTTTTTTTTTGCTCAACTAAGTCAAGGTATATTATCCTAGAGCGGACATTCAATCTAGAACATAAACTAACCAAATACTCTTCTTTGACTTTTACAGAATTCTCGCAGAGTTCTCTAAACGATCTTGATTCATCGACAATATGGGCG
**************************************************.........((.....(((((.(((.............(((((...((((((....(((((((((((..........(((........))).)))))))..........))))....))))))....))))))))...))))).....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR902008
ovaries
 M053
female body
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
......................CAGCCATCGATCGTGATAGAT............................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
........................GCCATCGATCGTGATAGAT............................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0
................................................................................................................................GGTATATTATCCTAGAGCGGACATTC................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0
...................................TGATAGATCCTAGATCGCAGATCCC.............................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CTCTAAACGATCTTGATTCAGCGACAA........ 27 1 1 1.00 1 0 1 0 0 0 0 0 0
.......................AGCCATCGATCGTGATAGAT............................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TCTCGCAGAGTTCTCTAAACGA......................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................TCAGCCATCGATCGTGATAGAT............................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................CAGAGTTCTACAGACGATC....................... 19 3 10 0.40 4 0 1 0 0 0 3 0 0
..............................................AGAGCGCAGATACCTAAAA......................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 1 0 0 0
.......................CGCCATAGATCGTGATAG................................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................CTAACCAATTACTCTCCT............................................................... 18 2 6 0.17 1 0 0 0 1 0 0 0 0
..............................................AGAGCGCAGATACCAAAAAAA....................................................................................................................................................................................... 21 3 15 0.13 2 0 0 0 0 2 0 0 0
...............................................................................................................................................................................................................GCAGAGTTCTCTCAA............................ 15 1 18 0.06 1 0 0 0 0 0 0 1 0
................................................ATCGCAGAGTCCTAAAGAA....................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0
...............................................................................................................ATGCTCAAGTATGTCAAGG........................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTTCGCCGTCGATCTTCGTAAAGTCGGTAGCTAGCACTATCTAGGATCTAGCGTCTAGGGATTTTTTCAGTGTTCGTTGGTCTTGGTTTCACATTGAATCAATAAAAAAAAAACGAGTTGATTCAGTTCCATATAATAGGATCTCGCCTGTAAGTTAGATCTTGTATTTGATTGGTTTATGAGAAGAAACTGAAAATGTCTTAAGAGCGTCTCAAGAGATTTGCTAGAACTAAGTAGCTGTTATACCCGC
**************************************************.........((.....(((((.(((.............(((((...((((((....(((((((((((..........(((........))).)))))))..........))))....))))))....))))))))...))))).....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.............................................ATCTAGCGTCTAGGGATTTTTTCAGTGT................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................TGCTAGAACGAAGTGGCTGG......... 20 3 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TGCTAGAACGAAGTGGCGG.......... 19 3 15 1.00 15 15 0 0 0 0 0 0
..................................................................................................................................................CCTGGAACTTAGATCTTG...................................................................................... 18 2 5 0.80 4 2 0 0 2 0 0 0
........................................................................................................................................................................................................................AGAATTGCTGGAACTAAG................ 18 2 7 0.29 2 2 0 0 0 0 0 0
...........................................................................................................................................................................ACGGTTTTTGAGAAGAAACTGA......................................................... 22 3 4 0.25 1 0 0 1 0 0 0 0
...............................................................................................................................................................................................................CGTCTCAAGAGAGTT............................ 15 1 18 0.22 4 0 0 2 0 1 1 0
..............................................................................................................................................................................................................TCGTCTCAAGAGATTT............................ 16 1 5 0.20 1 0 0 0 0 1 0 0
........................................................................................................AAAAAAAAACTTGTTGATT............................................................................................................................... 19 2 20 0.10 2 0 0 0 0 2 0 0
.............................................................................................................AAAACGAGTGGCTTCAGT........................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0 0
..............................................................................................................................................................ATATAGTATTGGATTGGTTT........................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 04:14 AM