ID:

dsi_10964

Coordinate:

3r:17180724-17180873 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-28.8	-28.8	-28.6

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

GTTGTGCGGCGTGCTGTTGCCGGTTTTGTCTACAGCGAGGCGGTTGCTTGGTGAGAATCGAGCGGCATTGCCACAATGCCACAATCTGCGTTTGTTTTGGCCCAAAAGGGAGTAAATTATTAATTATAATTAATTAAAGGACGTGCCCGGCAGTAATTTGATTTGAGCAAACCCAATTTAGTTGTCTATTCGAGAGATTAACATCCAAGATAATTTATAAGAGTAATTAAACGTGTGCTATTTAAACACA ************************************************.......(((((.(((((((...)))))))(((((.((.((((((((...(((....)))....((((((.....))))))(((((((..((.(((...)))))..))))))).)))))))).)).....)))))...))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR553485 Chicharo_3 day-old ovaries
...................................................TGAGAATCGAGCGGC........................................................................................................................................................................................	15	0	1	1.00	1	0	1	0	0	0
....................................................GAGAATCGAGCGGCC.......................................................................................................................................................................................	15	1	4	0.75	3	2	0	1	0	0
...............................ACAGCTAACCGGTTGCTTGGT......................................................................................................................................................................................................	21	3	2	0.50	1	1	0	0	0	0
...................................................TGAGAATCGAGCGGCC.......................................................................................................................................................................................	16	1	2	0.50	1	0	0	1	0	0
...................................................TGAGAATCGGGCGGC........................................................................................................................................................................................	15	1	7	0.43	3	1	0	2	0	0
....................................................GAGAATCGGGCGGCTGTGCC..................................................................................................................................................................................	20	3	3	0.33	1	0	0	0	1	0
..........................................................................................................................ATTATAATTTATGAAAGG..............................................................................................................	18	2	20	0.10	2	0	2	0	0	0
...................................................TGAGAATCGGGCGGCC.......................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	1
.........................................................................................................................................AGGACGTGCCAGGCATT................................................................................................	17	2	20	0.05	1	1	0	0	0	0

Anti-sense strand reads

CAACACGCCGCACGACAACGGCCAAAACAGATGTCGCTCCGCCAACGAACCACTCTTAGCTCGCCGTAACGGTGTTACGGTGTTAGACGCAAACAAAACCGGGTTTTCCCTCATTTAATAATTAATATTAATTAATTTCCTGCACGGGCCGTCATTAAACTAAACTCGTTTGGGTTAAATCAACAGATAAGCTCTCTAATTGTAGGTTCTATTAAATATTCTCATTAATTTGCACACGATAAATTTGTGT ************************************************.......(((((.(((((((...)))))))(((((.((.((((((((...(((....)))....((((((.....))))))(((((((..((.(((...)))))..))))))).)))))))).)).....)))))...))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	O002 Head	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
...........................CAGATGTCCCTCCGCC...............................................................................................................................................................................................................	16	1	1	1.00	1	1	0	0	0	0
...........ACGACAACGGCCAAAACA.............................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0
................................................................................................................................................................TAGACTAGTTTGGGTTCAAT......................................................................	20	3	8	0.13	1	0	0	1	0	0
.............................................................CGCCTTAAGGGTGTTGCGGT.........................................................................................................................................................................	20	3	12	0.08	1	0	0	0	1	0
...............................................TACCAATCTTGGCTCGCCG........................................................................................................................................................................................	19	3	12	0.08	1	0	0	0	0	1
.......................................................................GTGTCACTGTGTTAGACTC................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0

Generated: 04/23/2015 at 02:18 PM