dsi_10961

################################################################################################################################################################## TCAGGAGCAGAAAGAGGAGCAGCGTTCGAGCCAGAAGTGAGCCATGTTTGGTGTGTACGCTTACGTTGTTGTTAGTTGTTTAATTGTAGCGAACATTGTTGTTGTTGTTAAGGTTTAAATGTGTGACTAAGAACTTACCAAGATGATTGTATAGCAAACGCT ************************************************..((((.((((.(((.....(((((....)))))))))))).))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	M024 male body	M025 embryo	SRR902009 testis	M053 female body	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	GSM343915 embryo	M023 head	O001 Testis	O002 Head
...........................................................................................................................TGACTAAGAACTTACCAAGATGATTGTA...........	28	0	1	3.00	3	0	0	1	0	0	0	2	0	0	0	0	0	0	0
......................................................................................................................................TTACCAAGATGATTGTATAGCAAACGC.	27	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................GTTGTTAGTTGTTTAATTGTAGC........................................................................	23	0	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................TAAATGTGTGACTAAGAACTTACCAAGATG.................	30	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TACCAAGATGATTGTATAGCAAAC...	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................GCAGCGTTCGAGCCAGAAGTG...........................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................CTTACCAAGATGATTGTATAGCA......	23	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................TTACCAAGATGATTGTATAGCAAA....	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AAGTGAGCCATGTTTGGTGTG...........................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................TAAGAACTTACCAAGATGATTGTATA.........	26	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................AGATGATTGTATAGCAAAC...	19	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................TAAGAACTTACCAAGATGATTGTATAGCAA.....	30	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................GTTTAATTGTAGCGAACATTG................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................TTAATTGTAGCGAACATTGTTGTTG..........................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TAATTGTAGCGAACATTGTTGTTGT.........................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TGACTAAGAACTTACCAAGATGAT...............	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................GTTGTTGTTAGTTGTTTAATTGTAGC........................................................................	26	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................TAAATGTGTGACTAAGAACTTACCAAGA...................	28	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................AATTGTAGCGAACATTGTTGTTGT.........................................................	24	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................TACGCTTACGTTGTTGTTAGTTGT...................................................................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TGACTAAGAACTTACCAAGATGA................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TGTTTAATTGTAGCGAACATTGTTGT............................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CAGCGATCGAGCCAGAAGTGA..........................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................TTACCAAGATGATTGTATAGC.......	21	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................TTTAATTGTAGCGAACATTGTTGTTGT.........................................................	27	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................ACTAAGAACTTACCAAGATGATTGTA...........	26	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................TGTTGTTAGTTGTTTAATTGTAGC........................................................................	24	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................TTGTAGCGAACATTGTTGTTGTGG.......................................................	24	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................TTGTTGTTGTTGTTAAGGTT...............................................	20	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................TGTTAAGGTTTAAATGTGTGACTAAGAACT...........................	30	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TTAAGGTTTAAATGTGTGACTAAGAAC............................	27	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TGTTAAGGTTTAAATGTGTGACTAAGAAC............................	29	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....AGCAGAAAGAGGAGCAGCGTT........................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................AAGTGGGCCATTTTTGGT..............................................................................................................	18	2	13	0.15	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0
...........AAGGGGAGTAGCGTTTGAG....................................................................................................................................	19	3	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0

AGTCCTCGTCTTTCTCCTCGTCGCAAGCTCGGTCTTCACTCGGTACAAACCACACATGCGAATGCAACAACAATCAACAAATTAACATCGCTTGTAACAACAACAACAATTCCAAATTTACACACTGATTCTTGAATGGTTCTACTAACATATCGTTTGCGA ************************************************..((((.((((.(((.....(((((....)))))))))))).))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR553488 RT_0-2 hours eggs
......................................................................................................................TACACACTGATTCTTGAAT.........................	19	0	1	1.00	1	1	0
............TCCCCTCGGCGCAAGCT.....................................................................................................................................	17	2	2	0.50	1	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:20951354-20951515 +	dsi_10961	TCAGGA-GCAGAAAGAGGAGCAGCG---TTCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGATTGTATAGCA-AACGCT
droSec2	scaffold_11:1353969-1354120 +		A-----------AAGAGGAGCAGCG---ATCGAACCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAATTTACCAAGATGATTGTATAGCA-AACGCT
dm3	chr3L:21429849-21430010 +		TCAGGA-GCAGAAAGAGGAGCAGCG---ATCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGATTGTATAGCA-AACGCT
droEre2	scaffold_4784:21087696-21087857 +		TCAGGA-GCAGAAAGAGGAGCAGCG---ATCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT
droYak3	v2_chr3L_random_023:3764-3925 +		TCAGGA-GCAGAAAGAGGAGCAGCG---ATCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT
droEug1	scf7180000409711:4596519-4596669 -		TGAG----------GAGGAGCAGCG---ATCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATG--TGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT
droBia1	scf7180000302193:4610261-4610422 -		TCAGGA-GCAGGAGGAGGAGCAGCG---ATCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT
droTak1	scf7180000415809:1015522-1015683 -		GCACGA-GCAGCAAGAGGAGCAGCC---ATCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT
droEle1	scf7180000491193:1918719-1918874 -		TCAGTC-------GGAGGAGCAGCG---ATCGAGACA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT
droRho1	scf7180000780098:90650-90798 -		--------------GAGGAGCAGCG---ATCGAGACA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT
droFic1	scf7180000453929:563420-563572 +		TGAG----------GAGGAGCAGCA---ATCGAGCCA-GGAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-AAAGAACTTACCAAGATGAATGTATAGCA-AACGCT
droKik1	scf7180000302486:1270249-1270413 -		TCCTGA-GCA---AGAGGAGCAGCAATCATCGATCCG-AAAG---TGA--------------------------------G-----CCA----------------------------GGTTTTGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGAAACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGACGTAAGAACTTACCAAGATGAATGTATAGCA-AACGCT
droAna3	scaffold_13337:10247757-10247906 +		TCCAGA-GCATTCAGAAGAGCAGCG---A----------------TGA--------------------------------G-----CCG----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT
droBip1	scf7180000396569:1116704-1116853 -		TCCAGA-GCATTCAGAAGAGCAGCG---A----------------TGA--------------------------------G-----TCG----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT
dp5	XR_group6:12775836-12775998 +		AGAGGG-CGAGGGCGAGGAGCAGCG---ATCGCGCAA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAGTGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCAAAACGCT
droPer2	scaffold_33:799878-800038 +		--AGGA-AGAGGGCGAGGAGCAGCG---ATCGCGCAA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAGTGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCAAAACGCT
droWil2	scf2_1100000004768:409222-409410 +		TCAAGAAGGAGGAGGAGCAGCAGCC---ATCGCTTCATCAAG---TGA---------------------ATA--------C-----CCGTTGT-----GTGTTTTAATTAATTTTTGGGTG-TGTGGTGTACGCTTACCGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACATTTGTT------------------------GTTGTTGTTAAAAAAGAAAAACAAAAAAAAGAGTTAAATGTGTGAC-TATACATATACCC-----------------------
droVir3	scaffold_13049:9618383-9618530 +		TTAACA-AAAGATAGA----CCGTA---ATCGTT----------------------------------------------G-----CCGTTGT---------------TG-TT-----G-C-TGCTGCATACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGAAACAT-TGTTGTTGTTCTTGTTGTTGTTGTTGTTGTTGTTGTTA-------------------AGGTCTA----------------GCTTACCAAGCTGA-----------------
droMoj3	scaffold_6680:11146322-11146479 -		ACATAG-ACTGTCAACTGGGTATTG---T----------------T----------------------------------G-----TCGTTGTTGTCGCTGTTGTCGTTG-TTGTTGCTTT-CGGTGTATACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGAAACCT-TGTT------------------------GTTGTTGTTA-------------------AGATTTAATCG--TAAC-TGAGAACTTACCGAGATGA-----------------
droGri2	scaffold_15110:17393104-17393306 +		GCAAGA-GCAGCTACGGCAACGGCG---ACGCTGCCA-TAAAACTTGAATCGTTGCTGCGATGTTGTTGCTGCCTGTTTGCTGCTGTCGTTGTTGCTGCTGTTGTTGTTG-TT-----G-T-TGGTGTATACGCTTA-TGTTGTTGTTAGTTGTTTAGTAGTAGCGAAACAT-TGTT---------------------------GTTGTTA-------------------AGGTTTAAAAG--TGAC-TAAGAACTTACCAAGATGA-----------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TCAGGA-GCAGAAAGAGGAGCAGCG---TTCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGATTGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................................................TGAC-TAAGAACTTACCAAGATGATTGTA............	28	1	3.00	3	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0
...............................................................................................................................................................................................................................................................TTACCAAGATGATTGTATAGCA-AACGC.	27	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
..............................................................................................................................................GTTGTTAGTTGTTTAATTGTAGC.......................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TAAATGTGTGAC-TAAGAACTTACCAAGATG..................	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TACCAAGATGATTGTATAGCA-AAC...	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................GCAGCG---TTCGAGCCA-GAAG---TG.............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CTTACCAAGATGATTGTATAGCA-......	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TTACCAAGATGATTGTATAGCA-AA....	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................AAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTG...........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TAAGAACTTACCAAGATGATTGTATA..........	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGATGATTGTATAGCA-AAC...	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TAAGAACTTACCAAGATGATTGTATAGCA-A.....	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................GTTTAATTGTAGCGA-ACAT-TG.............................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TTAATTGTAGCGA-ACAT-TGTT------------------------GTTG...............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................TAATTGTAGCGA-ACAT-TGTT------------------------GTTGT..............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGAC-TAAGAACTTACCAAGATGAT................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................GTTGTTGTTAGTTGTTTAATTGTAGC.......................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TAAATGTGTGAC-TAAGAACTTACCAAGA....................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................AATTGTAGCGA-ACAT-TGTT------------------------GTTGT..............................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TACGCTTA-CGTTGTTGTTAGTTGT..................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGAC-TAAGAACTTACCAAGATGA.................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TGTTTAATTGTAGCGA-ACAT-TGTT------------------------GT.................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TTACCAAGATGATTGTATAGC........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGT..............................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AC-TAAGAACTTACCAAGATGATTGTA............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................TGTTGTTAGTTGTTTAATTGTAGC.......................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................T-TGTT------------------------GTTGTTGTTA-------------------AGGTT.................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACT............................	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTA-------------------AGGTTTAAATGTGTGAC-TAAGAAC.............................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAAC.............................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....A-GCAGAAAGAGGAGCAGCG---TT..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

A-----------AAGAGGAGCAGCG---ATCGAACCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAATTTACCAAGATGATTGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................CA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGT..............................................................................................................................................................	21	1	1.00	1	0	0	1	0
...............................GAACCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGT............................................................................................................................................................	27	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................TTA-------------------AGGTTTAAATGTGTGAC-T...................................	21	1	1.00	1	0	1	0	0
...............AGGAGCAGCG---ATCGAACC........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
.................................................................................................................................TACGCTTA-CGTTGTTGTTAGT.....................................................................................................................................	21	1	1.00	1	0	1	0	0
................................................................................................................................................TGTTAGTTGTTTAATTGTAGC.......................................................................................................................	21	1	1.00	1	0	0	1	0
..............................CGAACCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGT............................................................................................................................................................	28	1	1.00	1	0	1	0	0

dm3

TCAGGA-GCAGAAAGAGGAGCAGCG---ATCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGATTGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................TGTTTAATTGTAGCGA-ACAT-TGTT------------------------GT.................................................................................	26	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TTAATTGTAGCGA-ACAT-TGTT------------------------GTTGT..............................................................................	26	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TAATTGTAGCGA-ACAT-TGTT------------------------GTTGT..............................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TT-TGGTGTGTACGCTTA-CGTTGTTG..........................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......GCAGAAAGAGGAGCAGCG---AT..............................................................................................................................................................................................................................................................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AGGA-GCAGAAAGAGGAGC.......................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GAGGAGCAGCG---ATCGAGCCA-GAAG---...............................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................AAGAACTTACCAAGATGATTGTATAGC........	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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TCAGGA-GCAGAAAGAGGAGC.......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........AAAGAGGAGCAGCG---ATCGAGC.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GAAAGAGGAGCAGCG---ATCGAGCCA-GA....................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................AACTTACCAAGATGATTG..............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GTTGTTGTTA-------------------AGGTTTAAATGTGT........................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CAGGA-GCAGAAAGAGGAGCAG.....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GATGATTGTATAGCA-AACGCT	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................TGTACGCTTA-CGTTGTTGTTAGT.....................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TAGCGA-ACAT-TGTT------------------------GTTGT..............................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TCAGGA-GCAGAAAGAGGAGCAGCG---ATCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........GAAAGAGGAGCAGCG---ATCGAGCCA-......................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................A-------------------AGGTTTAAATGTGTGAC-T...................................	19	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................CA----------------------------TGTT-TGGTGTGTACGCTTA-CGT...............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................TACCAAGATGAATGTATAGCA-AACGCT	27	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................GTTGTTGTTAGTTGTTTAA..............................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
......................................GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGG...............................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0	0

droYak3

TCAGGA-GCAGAAAGAGGAGCAGCG---ATCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................GTGTACGCTTA-CGTTGTTGTTAGTT....................................................................................................................................	25	2	1.00	2	0	1	0	0	0	0	1	0	0	0	0
..AGGA-GCAGAAAGAGGAGCAGC....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................C-TAAGAACTTACCAAGATGAAT...............	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................TTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTT.............................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................GAC-TAAGAACTTACCAAGATGA.................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................GTACGCTTA-CGTTGTTGTTAGTC....................................................................................................................................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................TGTTGTTAGTTGTTTAATTGTAGCGA-....................................................................................................................	26	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0
..............................CGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGT............................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................A-------------------AGGTTTAAATGTGTGAC-TAAGAAC.............................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................TAATTGTAGCGA-ACAT-TGTT------------------------GTT................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGT..............................................................................	28	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTT..............................................................................................................................................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................AATTGTAGCGA-ACAT-TGTT------------------------GTT................................................................................	22	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0
.............AGAGGAGCAGCG---ATCGAGC.........................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................GTTGTTAGTTGTTTAATTGTAGC.......................................................................................................................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
...............................GAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TG................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.......................................AAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTA.........................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TGAG----------GAGGAGCAGCG---ATCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATG--TGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCAGGA-GCAGGAGGAGGAGCAGCG---ATCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCACGA-GCAGCAAGAGGAGCAGCC---ATCGAGCCA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCAGTC-------GGAGGAGCAGCG---ATCGAGACA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

--------------GAGGAGCAGCG---ATCGAGACA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGAG----------GAGGAGCAGCA---ATCGAGCCA-GGAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-AAAGAACTTACCAAGATGAATGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCCTGA-GCA---AGAGGAGCAGCAATCATCGATCCG-AAAG---TGA--------------------------------G-----CCA----------------------------GGTTTTGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGAAACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGACGTAAGAACTTACCAAGATGAATGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCCAGA-GCATTCAGAAGAGCAGCG---A----------------TGA--------------------------------G-----CCG----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................GCAGCG---A----------------TGA--------------------------------G-----CCG----------------------------TGTT-TGGTGT............................................................................................................................................................	24	1	2.00	2	0	1	1	0	0	0
..............................................................................................................................GTGTACGCTTA-CGTTGTTGTT........................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................GA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGT..................................................	24	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................GAACTTACCAAGATGAATGTATA..........	23	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................GA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGC..................................................	24	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................TTAAATGTGTGAC-TAAGAACT............................	21	1	1.00	1	0	1	0	0	0	0
...................GCAGCG---A----------------TGA--------------------------------G-----CCG----------------------------TGTT-TGGT..............................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................TA-CGTTGTTGTTAGTTGTTTAATT............................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................GCTTA-CGTTGTTGTTAGTT....................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................G---A----------------TGA--------------------------------G-----CCG----------------------------TGTT-TGGTGTGT..........................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................GAACTTACCAAGATGAATGTA............	21	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................TACGCTTA-CGTTGTTGTTAGTT....................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
......................GCG---A----------------TGA--------------------------------G-----CCG----------------------------TGTT-TGGT..............................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................TGTTGTTAGTTGTTTAATTGTAGC.......................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................GTTGTTA-------------------AGGTTTAAATGTGT........................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................AGCGA-ACAT-TGTT------------------------GTTGTT.............................................................................	19	1	1.00	1	0	0	0	0	1	0

droBip1

TCCAGA-GCATTCAGAAGAGCAGCG---A----------------TGA--------------------------------G-----TCG----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAATGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCA-AACGCT	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGAGGG-CGAGGGCGAGGAGCAGCG---ATCGCGCAA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAGTGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCAAAACGCT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................TGTTAGTTGTTTAATTGTAGC.......................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................TTGTTGTTA-------------------AGGTTTAAGTGT..........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GATGAATGTATAGCAAAACG..	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................AAGTGTGTGAC-TAAGAACT............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................GTTGTTGTTAGTTGTTTAATTGTAGC.......................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................GAC-TAAGAACTTACCAAGATG..................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AAGATGAATGTATAGCAAAAC...	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........AGGGCGAGGAGCAGCG---ATCGCGCAA-......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................GTT-TGGTGTGTACGCTTA-CGT...............................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................TT------------------------GTTGTTGTTA-------------------AGGTTTAAG.............................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................GTACGCTTA-CGTTGTTGTTA.......................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................GCAGCG---ATCGCGCAA-GAAG---TGA--------------------------------G-----CC....................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................GTGTACGCTTA-CGTTGTTGTTAGTT....................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................TTAATTGTAGCGA-ACAT-TGTT------------------------GTT................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................AT-TGTT------------------------GTTGTTGTTA-------------------AGGT..................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.GAGGG-CGAGGGCGAGGAGC.......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................ATTGTAGCGA-ACAT-TGTT------------------------...................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................GTACGCTTA-CGTTGTTGTTAGTT....................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................AA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGT..............................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................GA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACG.......................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................T-TGTT------------------------GTTGTTGTTA-------------------......................................................	15	20	0.05	1	0	0	0	0	0	0	0	1	0	0

droPer2

--AGGA-AGAGGGCGAGGAGCAGCG---ATCGCGCAA-GAAG---TGA--------------------------------G-----CCA----------------------------TGTT-TGGTGTGTACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AGGTTTAAGTGTGTGAC-TAAGAACTTACCAAGATGAATGTATAGCAAAACGCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................GTTAGTTGTTTAATTGTAGC.......................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
............................................................................................................................................................................................................GTTGTTA-------------------AGGTTTAAGTGTGT........................................	21	1	3.00	3	0	0	1	0	0	2
......................................................................................................................................................................................................................................AGGTTTAAGTGTGTGAC-TAAGAACT............................	25	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................GTTAGTTGTTTAATTGTAG........................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................TAAGTGTGTGAC-TAAGAACT............................	20	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................GTTGTTGTTAGTTGTTTAATTGTAGC.......................................................................................................................	26	1	2.00	2	1	0	0	0	0	1
.......................................................................................................................................................................................................................................GGTTTAAGTGTGTGAC-TAAGAAC.............................	23	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................GA-ACAT-TGTT------------------------GTTGTTGTTA-------------------AG....................................................	22	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................ATTGTAGCGA-ACAT-TGTT------------------------GTT................................................................................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................TGTGTGAC-TAAGAACTTACCAAGATGA.................	27	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................T------------------------GTTGTTGTTA-------------------AGGTTTAAGTGTGTGA......................................	27	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................TAATTGTAGCGA-ACAT-TGTT------------------------GTTGTT.............................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................GTTTAAGTGTGTGAC-TAAGAACTTACC........................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................C-TAAGAACTTACCAAGATGAAT...............	22	1	1.00	1	1	0	0	0	0	0

droWil2

TCAAGAAGGAGGAGGAGCAGCAGCC---ATCGCTTCATCAAG---TGA---------------------ATA--------C-----CCGTTGT-----GTGTTTTAATTAATTTTTGGGTG-TGTGGTGTACGCTTACCGTTGTTGTTAGTTGTTTAATTGTAGCGA-ACATTTGTT------------------------GTTGTTGTTAAAAAAGAAAAACAAAAAAAAGAGTTAAATGTGTGAC-TATACATATACCC-----------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................TTAATTAATTTTTGGGTG-T.................................................................................................................................................................	19	1	3.00	3	0	0	0	3	0
....................................................................................................GTTTTAATTAATTTTTGGGTG-TGTGGT............................................................................................................................................................	27	1	2.00	2	0	0	1	1	0
.................................................................................................................................................GTTAGTTGTTTAATTGTAGC.......................................................................................................................	20	1	2.00	2	0	0	0	2	0
................................................................................................................................................TGTTAGTTGTTTAATTGT..........................................................................................................................	18	1	1.00	1	0	0	0	1	0
.CAAGAAGGAGGAGGAGCAGCAGCC---AT..............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
....................................ATCAAG---TGA---------------------ATA--------C-----CCGTTGT-----GT........................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..............................................................................................................ATTTTTGGGTG-TGTGGTGTACGC......................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
....................................................................................................................................GCTTACCGTTGTTGTTAG......................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..................................................................................................................TTGGGTG-TGTGGTGTACGC......................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................AATTTTTGGGTG-TGTGGTGTACGCT.....................................................................................................................................................	25	1	1.00	1	0	0	0	0	1
.......................................................................................................TTAATTAATTTTTGGGTG-TGTGGT............................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................AAAAAAAGAGTTAAATGTGTGAC-T...................................	24	1	1.00	1	0	0	0	1	0
........................................AG---TGA---------------------ATA--------C-----CCGTTGT-----GTGTT.....................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................ATTGTAGCGA-ACATTTGTT------------------------GTTGTT.............................................................................	25	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................CAAAAAAAAGAGTTAAATGTGT........................................	22	1	1.00	1	0	0	0	1	0
....................................................................................................GTTTTAATTAATTTTTGGGT....................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
............................................................................................................TAATTTTTGGGTG-TGTGGTGTACGCT.....................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.................................................................................................................................................GTTAGTTGTTTAATTGTAG........................................................................................................................	19	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................AGCGA-ACATTTGTT------------------------GTTGTT.............................................................................	20	1	1.00	1	0	0	0	1	0
....................................................................................................GTTTTAATTAATTTTTGGGTG-T.................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
........................................................................................................................................................GTTTAATTGTAGCGA-ACATTTGTT------------------------GTT................................................................................	27	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................GA-ACATTTGTT------------------------GTTGTTGTT..........................................................................	20	2	0.50	1	0	0	0	1	0
...........................................................................................................................................................................TTTGTT------------------------GTTGTTGTTAAA.......................................................................	18	9	0.11	1	0	0	0	0	1
......AGGAGGAGGAGCAGCAGC....................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0

droVir3

TTAACA-AAAGATAGA----CCGTA---ATCGTT----------------------------------------------G-----CCGTTGT---------------TG-TT-----G-C-TGCTGCATACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGAAACAT-TGTTGTTGTTCTTGTTGTTGTTGTTGTTGTTGTTGTTA-------------------AGGTCTA----------------GCTTACCAAGCTGA-----------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............A----CCGTA---ATCGTT----------------------------------------------G-----CCGTTGT---------------TG-.............................................................................................................................................................................	22	1	55.00	55	1	8	2	2	1	1	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	11	1	1	5	6	0	1	0	1	0	2	1	0	2	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............A----CCGTA---ATCGTT----------------------------------------------G-----CCGTTGT---------------T...............................................................................................................................................................................	21	1	19.00	19	0	5	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	1	0	2	1	1	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................CCGTA---ATCGTT----------------------------------------------G-----CCGTTGT---------------TG-.............................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0
...............A----CCGTA---ATCGTT----------------------------------------------G-----CCGTTGT---------------TT-.............................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............A----CCGTA---ATCGTT----------------------------------------------G-----CCGTTGT---------------................................................................................................................................................................................	20	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............A----CCGTA---ATCGTT----------------------------------------------G-----CCGTTGT---------------TA-.............................................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............A----CCGTA---ATCGTT----------------------------------------------G-----CCGTTGT---------------TA-A............................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
TTAACA-AAAGATAGA----CCGTA---ATC.............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CATACGCTTA-CGTTGTTGTTAGT.....................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................GTTAGTTGTTTAATTGTAGCGA.....................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GTTGTTGTTGTTA-------------------AGGTCTA----------------GC.............................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TA---ATCGTT----------------------------------------------G-----CCGTTGT---------------TG-TT-----G-....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............A----CCGTA---ATCGTT----------------------------------------------G-----CCGTTGT---------------TG-A............................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................A-------------------AGGTCTA----------------GCTTACCAAGCT...................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTAACA-AAAGATAGA----CCGT....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GTTA-------------------AGGTCTA----------------GCTTACCAAGC....................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TGTTAGTTGTTTAATTGTAGC.......................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGTTA-------------------AGGTCTA----------------GCTTACCAAGCTGA-----------------	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGTTGTTGTTA-------------------AGGTCTA----------------GCTC...........................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............A----CCGTA---ATCGTT----------------------------------------------G-----CCGTTGT---------------AA-.............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTAACA-AAAGATAGA----CCGTA---................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TGCATACGCTTA-CGTTGTTGTTAGTT....................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTGTTGTTGTTA-------------------AGGTCTA----------------G..............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TGTTGTTAGTTGTTTAATTGT..........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................GT---------------TG-TT-----G-C-TGCTGCATACGCTTA-CGTT..............................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................GTTGTTA-------------------AGGTCTA----------------GCTTACCA.......................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCATACGCTTA-CGTTGTTGTTAGTTGT..................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GTTGTTGTTA-------------------AGGTCTA----------------GCTT...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCATACGCTTA-CGTTGTTGTTAGTT....................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CGTT----------------------------------------------G-----CCGTTGT---------------TG-TT-----G-C-TGCTGC............................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CGTT----------------------------------------------G-----CCGTTGT---------------TG-TT-----G-C-TGCT..............................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GTTGTTGTTGTTGTTGTTA-------------------AG....................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TTGT---------------TG-TT-----G-C-TGCTGCAT..........................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GTT----------------------------------------------G-----CCGTTGT---------------TG-TT-----G-C-T.................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................CGTTGT---------------TG-TT-----G-C-TGCTGC............................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GTT----------------------------------------------G-----CCGTTGT---------------TG-TT-----G-C-TG................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACATAG-ACTGTCAACTGGGTATTG---T----------------T----------------------------------G-----TCGTTGTTGTCGCTGTTGTCGTTG-TTGTTGCTTT-CGGTGTATACGCTTA-CGTTGTTGTTAGTTGTTTAATTGTAGCGAAACCT-TGTT------------------------GTTGTTGTTA-------------------AGATTTAATCG--TAAC-TGAGAACTTACCGAGATGA-----------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................GTCGTTG-TTGTTGCTTT-CGGT..............................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................GTTGTTAGTTGTTTAATTGTAGC.......................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................GTATACGCTTA-CGTTGTTGTTAGTT....................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..ATAG-ACTGTCAACTGGGTATTG---T----------------T----------------------------------G-----TC....................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................CGCTGTTGTCGTTG-TTGTTGCT.....................................................................................................................................................................	22	2	0.50	1	0	0	0	0	1	0
................................................................................................CGCTGTTGTCGTTG-TTGTTGC......................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
............................................................................................TTGTCGCTGTTGTCGTTG-TT...........................................................................................................................................................................	20	3	0.33	1	0	0	0	0	1	0
.........................................................................................TTGTTGTCGCTGTTGTCGTTG-.............................................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	1

droGri2

GCAAGA-GCAGCTACGGCAACGGCG---ACGCTGCCA-TAAAACTTGAATCGTTGCTGCGATGTTGTTGCTGCCTGTTTGCTGCTGTCGTTGTTGCTGCTGTTGTTGTTG-TT-----G-T-TGGTGTATACGCTTA-TGTTGTTGTTAGTTGTTTAGTAGTAGCGAAACAT-TGTT---------------------------GTTGTTA-------------------AGGTTTAAAAG--TGAC-TAAGAACTTACCAAGATGA-----------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_10961

3l:20951404-20951465 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-8.2	-7.7	-7.7