ID:

dsi_1095

 Coordinate:

3l:8158331-8158480 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.0 -12.9 -12.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TAGTCTGTGTTTCTAACATTCTAAATCCGGCATTTTAAATATTCTGAAAGGTAAGTGGAGCATTCGTTTAGCGTTATATAAGCCGGTTCAAACTCCACGCCAAACACCCACACTTCTGATCGCATTCCGCCCAGCTATTTACTGCACTCAACGGCTGACTTGCAATTTATCTGAGCAAATAAAAAATGGTGGATTTCCAAATCGGTTGCGATACGTAAATTTGCCACAATCAAGCCTCCTTAATGCAAAT
*********************************************************........((((.((((..........((........)))))).)))).......(((..(((.(((.((.((((((.......)))........))).))..))).))).....))).************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M053
female body
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
........................ATCCGGCATTTTAAATATTCTGAAA......................................................................................................................................................................................................... 25 0 1 11.00 11 5 6 0 0 0 0 0 0 0 0
........................ATCCGGCATTTTAAATATTCTGAAAG........................................................................................................................................................................................................ 26 0 1 6.00 6 3 3 0 0 0 0 0 0 0 0
......................AAATCCGGCATTTTAAATATTCTGAAA......................................................................................................................................................................................................... 27 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0
.......................AATCCGGCATTTTAAATATTCTGAAAG........................................................................................................................................................................................................ 27 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0
.......................AATCCGGCATTTTAAATATTCTGAAA......................................................................................................................................................................................................... 26 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
...........TCTAACATTCTAAATCCGGCATT........................................................................................................................................................................................................................ 23 0 1 3.00 3 0 2 0 1 0 0 0 0 0 0
..........................CCGGCATTTTAAATATTCTGAAAGATG..................................................................................................................................................................................................... 27 2 1 3.00 3 1 1 1 0 0 0 0 0 0 0
...........TCTAACATTCTAAATCCG............................................................................................................................................................................................................................. 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..........................CCGGCATTTTAAATATTCTGAAA......................................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........TCTAACATTCTAAATCCGGC........................................................................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
........GTTTCTAACATTCTAAATCCGGC........................................................................................................................................................................................................................... 23 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
.....................TAAATCCGGCATTTTAAATATTCTGAAA......................................................................................................................................................................................................... 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................CAACGGCTGACTTGCAATTTATCTGAGC.......................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........GTTTCTAACATTCTAAATCCGAC........................................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................TCTAAATCCGGCATTTTAAATATTC.............................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................TAAATCCGGCATTTTAAATATTCTGAA.......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................GCATTTTAAATATTCTGAAAGATG..................................................................................................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................CATTTTAAATATTCTGAAA......................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................ATATTCTGAAAGGTAAGTGGAGCATT.......................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................GGCATTTTAAATATTCTG............................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........TCTAACATTCTAAATCCGG............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................CGTTCAAACTCTAGGCCAAAC................................................................................................................................................. 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........TCTAACATTCTAAATCCGGCATTT....................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................CCGGCATTTTAAATATTCTGAAAGAT...................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................GAGCATTCGTTTAGCGTTATA............................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................TTTCCAAATCGGTTGCGA....................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............CTAACATTCTAAATCCGGC........................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................TAAATCCGGCATTTTAAATATTC.............................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
......................AAATCCGGCATTTTAAATATTCTGAAAG........................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................AATCCGGCATTTTAAATATTCTGAAAGA....................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................ATCCGGCATTTTAAATATTCTGAAAGAT...................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................GGCATTTTAAATATTCTGAAAGATG..................................................................................................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........TTCTAACATTCTAAATCCGGC........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................AACACCCACACTTCTGATCGC............................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................CATTTTAAATATTCTGAAAG........................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................ATCCGGCATTTTAAATATTCTG............................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............AACATTCTAAATCCGGCATT........................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...ACTGTGTTTCTAACATTC..................................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................TTATGAAAGGTAAGTGGAGCATTCGTT...................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
............................GGCATTTTAAATATTCTGAAAGGTA..................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................GCGTTCGTTTAGCGTT............................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0
...............................ATTTTAAATATTCTGAAAGATGG.................................................................................................................................................................................................... 23 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................GTTCAAACTCGACGC...................................................................................................................................................... 15 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0
................................TTTTAAATATTCTGAAAGATG..................................................................................................................................................................................................... 21 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.....................................................................AGCGTTCTGTAAGCCG..................................................................................................................................................................... 16 2 20 0.15 3 0 0 0 0 1 2 0 0 0 0
.................................................GGTAAGAGGAGCATT.......................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................CTTATCGGCTGACTTGCA...................................................................................... 18 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0
..................................TTAAATATTCTGAAAGATG..................................................................................................................................................................................................... 19 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0
.AGTCTGTGTTTTTAA.......................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0
...........................................CTGAAGGTTAAGTGGAG.............................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
........................................ATTCTGAAAGTTACGTCG................................................................................................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................GTAGAGCATTCGTTTTG................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ATCAGACACAAAGATTGTAAGATTTAGGCCGTAAAATTTATAAGACTTTCCATTCACCTCGTAAGCAAATCGCAATATATTCGGCCAAGTTTGAGGTGCGGTTTGTGGGTGTGAAGACTAGCGTAAGGCGGGTCGATAAATGACGTGAGTTGCCGACTGAACGTTAAATAGACTCGTTTATTTTTTACCACCTAAAGGTTTAGCCAACGCTATGCATTTAAACGGTGTTAGTTCGGAGGAATTACGTTTA
**************************************************************************........((((.((((..........((........)))))).)))).......(((..(((.(((.((.((((((.......)))........))).))..))).))).....))).********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...................................................................................................................................................AGCTCCCGACTGAAAGTTA.................................................................................... 19 3 20 45.35 907 676 228 0 0 3 0 0
..................................................................................................GGGTTTGTGGGTGTGAAGACT................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................AGTTTGAGGGGCGGACTGTG............................................................................................................................................... 20 3 7 0.29 2 0 1 0 0 0 1 0
...........................................................................TAGACTCGGCCTAGTTTGAG........................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0
....................................................................................CCTAGTTTGAGATGCAGTTT.................................................................................................................................................. 20 3 4 0.25 1 0 1 0 0 0 0 0
.............................................................................................................TGTGATGAATAGCGTAAAGCG........................................................................................................................ 21 3 4 0.25 1 0 0 0 1 0 0 0
............................................................................ATACTCGGCCTAGTTTG............................................................................................................................................................. 17 2 9 0.11 1 0 1 0 0 0 0 0
....................................................................................................GCTTGTGGGTCGGAAGACTA.................................................................................................................................. 20 3 9 0.11 1 0 0 1 0 0 0 0
..................................................................................................................................................CAGTTCCCGACTGAAAGTTA.................................................................................... 20 3 10 0.10 1 0 1 0 0 0 0 0
..................................................................................................CGGTTTGCGGGTATGAA....................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................ACGGGGTTAGTTCGG.............. 15 1 19 0.05 1 0 0 0 0 0 0 1
.......................................................................................AGTTTGAGGGGCGGACTGT................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0

Generated: 04/24/2015 at 10:43 AM