ID:

dsi_10937

 Coordinate:

3r:13594574-13594865 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.0 -9.4

Flybase annnotation

five_prime_UTR [3r_13594442_13594554_-]; exon [3r_13594285_13594554_-]; Antisense to five_prime_UTR [3r_13594674_13595097_+]; Antisense to exon [3r_13594674_13595361_+]

No Repeatable elements found

Sense Strand Reads

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------###############################
AACTGCAGTCGGTTTTTTTGTGTGTGCGGGTGTTTGGTTGCAAGCGAAATGTAAGTAAAAGAATAGTAGTGGTCAATTTCACGCGTGCGGTCTTAAGAATCCGTCGCTTTGTGTGTTTACTAAAACTAAAGTGTTACTGAGCAGTTGCTCTTAGCGCATGCCACACTTACAATTATTGCGGTTTTAACACTTTGATCTTAAACTATTACTTTCCTAAATTACTAAACAAAATAAAAATAAGCGGAGCAACTACAGCCAAATCAACAGTATGACCAGTTGCAGACTACTTGAAATGCCCGCTGGTACTATAAAGCAGTTAGGTATATTTACGTTTAATTTCAGTATATTTTCGTTAGCCAACCACACTGGCGTGGAGTTCAAAACAAAACAAA
***************************************************...........(((.................(((.((((..........)))))))..)))**************************************************************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
...........................................................................................CTTAAGAATCCGTCGCTTTGT........................................................................................................................................................................................................................................................................................ 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
................................................................................................................GTGTTTACTAAAACTAAAGTGT.................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................TGCGGGTGTTTGGTTGC............................................................................................................................................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................TAAGTAAAAGAATAGTAGTGG................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................CGGTCTTAAGAATCCGTCGC............................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TTGCAGACGACTTGAA.................................................................................................... 16 1 6 1.00 6 3 0 0 0 0 1 2 0 0 0
.............................................................................................TAAGAATCCGTCGCTTTGTGT...................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TTGCAGACGACTTGA..................................................................................................... 15 1 16 0.56 9 5 0 0 0 0 1 1 0 2 0
..............................................................................................................................................................................................................................................................................................................GTTCTAGAAAGCAGTTAGG....................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................TGCAGACGACTTGAATTG................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0
..............................TGTTTGGTTGTAATCGAA........................................................................................................................................................................................................................................................................................................................................................ 18 2 16 0.13 2 0 0 0 0 0 0 0 2 0 0
...................................................................................CGTCCGGTCTTAAGAG..................................................................................................................................................................................................................................................................................................... 16 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................TAAAGTGTAACGGAGGAGT....................................................................................................................................................................................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................CTTGAAATACACCCTGGTA....................................................................................... 19 3 19 0.05 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................ATACAGCAGTGAGGAATAT.................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................AGGAGTTGGGTATATTGAC.............................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................ATGCCCGGTCGTACT..................................................................................... 15 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................GTTTTGATGCAAGCGAAA....................................................................................................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................GAGCAGTTGCTTATAGAGC........................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

##################################################################################################################################################################################################################################################------------------------------------------------------------------------------------------------------------------------------------------------------
TTGACGTCAGCCAAAAAAACACACACGCCCACAAACCAACGTTCGCTTTACATTCATTTTCTTATCATCACCAGTTAAAGTGCGCACGCCAGAATTCTTAGGCAGCGAAACACACAAATGATTTTGATTTCACAATGACTCGTCAACGAGAATCGCGTACGGTGTGAATGTTAATAACGCCAAAATTGTGAAACTAGAATTTGATAATGAAAGGATTTAATGATTTGTTTTATTTTTATTCGCCTCGTTGATGTCGGTTTAGTTGTCATACTGGTCAACGTCTGATGAACTTTACGGGCGACCATGATATTTCGTCAATCCATATAAATGCAAATTAAAGTCATATAAAAGCAATCGGTTGGTGTGACCGCACCTCAAGTTTTGTTTTGTTT
****************************************************************************************************************************************************************************************************************************************************************************************...........(((.................(((.((((..........)))))))..)))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
...................................................................................................................................................................................................................................................CTCGTTGATGTCGGTTTA................................................................................................................................... 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CGGTTTAGTTTTCATACTGGTCAA.................................................................................................................. 24 1 1 2.00 2 0 0 2 0 0 0 0 0 0
......................................................................CCAGTTGAAGTGCGCA.................................................................................................................................................................................................................................................................................................................. 16 1 1 2.00 2 0 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................TGGACAACGTCTGCTGAACATT................................................................................................... 22 3 1 2.00 2 0 0 0 0 0 0 1 1 0
..........................GCCCACAAACCAACGTTC............................................................................................................................................................................................................................................................................................................................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................................GTACGGTGTGAATGTTAA.......................................................................................................................................................................................................................... 18 0 1 2.00 2 1 0 0 0 1 0 0 0 0
......................................................................CCAGTTGAAGTGCGC................................................................................................................................................................................................................................................................................................................... 15 1 3 2.00 6 0 6 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................GTCGGTTTAGTTGTCATA.......................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................CCTCGTTGATGTCGGTTT.................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................GTCGGTTTAGTTGTCATACT........................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................CGTTGATGTCGGTTTAGTTGTCATA.......................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................GTTGATGTCGGTTTAG.................................................................................................................................. 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................GTACGGTGTGAATGTTAATAACG..................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................CCTCGTTGATGTCGGTTTA................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TTCGCCTCGTTGATGTCGGTTTA................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................CGTTGATGTCGGTTTAGTTGT.............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................CCTCGTTGATGTCGGTTTAG.................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................CGTTGATGTCGGTTTAG.................................................................................................................................. 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................ATGAAAGGATTTAATGATTTG..................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................CCGGTTTAGTTGTCATACTGGTC.................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................CAGTTGAAGTGCGCA.................................................................................................................................................................................................................................................................................................................. 15 1 4 1.00 4 0 3 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................TTGATGTCGGTTTAGTTGTC............................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................TGTCGGTTTAGTTGTCATA.......................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................CGCCAGTTGAAGTGCGCA.................................................................................................................................................................................................................................................................................................................. 18 2 2 1.00 2 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................GGTCGGTTTAGTTGTCATA.......................................................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................ACGAGAATCGCGTACGGTGTGAATG.............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................GATGTCGGTTTAGTTGTCA............................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................CCTCCTTGATGTCGGTTT.................................................................................................................................... 18 1 2 1.00 2 2 0 0 0 0 0 0 0 0
..............................................................................AGTCCGCACGCCAGATT......................................................................................................................................................................................................................................................................................................... 17 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................TGGGGTGGCCGCACGTCAAG............. 20 3 8 0.25 2 0 0 0 0 0 2 0 0 0
.............................................................................................ATTGTCAGGCAGCGA............................................................................................................................................................................................................................................................................................ 15 2 20 0.20 4 0 4 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGATTTAATGATATGTT................................................................................................................................................................... 17 1 5 0.20 1 0 0 0 0 0 1 0 0 0
....................................................................CGCCAGTTGAAGTGCGCAA................................................................................................................................................................................................................................................................................................................. 19 3 11 0.18 2 2 0 0 0 0 0 0 0 0
......................................................................CCAGTTGAAGTGCGCAATC............................................................................................................................................................................................................................................................................................................... 19 3 6 0.17 1 0 1 0 0 0 0 0 0 0
.....................................................................GCCAGTTGAAGTGCGCAA................................................................................................................................................................................................................................................................................................................. 18 3 20 0.15 3 1 0 0 0 1 0 1 0 0
.....................................................................GCCAGTTAAAGTGCGCAAT................................................................................................................................................................................................................................................................................................................ 19 3 8 0.13 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................TTGCTGTCGGTTTAGTTTTC............................................................................................................................. 20 2 17 0.12 2 0 0 0 0 0 0 0 0 2
......................................................................CCAGCTAAATTGCGCA.................................................................................................................................................................................................................................................................................................................. 16 2 12 0.08 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................GGTCAACGTCGGATG......................................................................................................... 15 1 13 0.08 1 0 1 0 0 0 0 0 0 0
.........................................................................................CAGATTTATTAGGCAGCAA............................................................................................................................................................................................................................................................................................ 19 3 13 0.08 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................AATGTGAAACTAGAATCT.............................................................................................................................................................................................. 18 2 15 0.07 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................................TGACTTGTCAACCAGAA................................................................................................................................................................................................................................................ 17 2 16 0.06 1 0 0 0 1 0 0 0 0 0
.....................................................................GCCAGTTGAAGTGCGC................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................................AGTTTTGTTTTGTTT 15 0 20 0.05 1 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................................................................................CAATCGGTTGGTGTA.......................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................GTTTGTTTTATTTTTAT......................................................................................................................................................... 17 1 20 0.05 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................CCTCGTCGATGTGGGTT..................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................AAAAGCTATCGGTTG............................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:13594524-13594915 - dsi_10937 AACTGCAGTCGGTTTTTTTGTG--------TGT---------------------GCGGGTGTTTGGTTGCA-AGCGAAATGTAAGTAAAAGAA-TAGTAGTGGT----------------------CAATT-TCACGCGTGCGGTCTTAAGAATCCGTCGCTTTG-TGT--GTTTACT--A--AAACT--AAAGTG--------------------------------------------T------------TACTG-AGCAGTTGCTCT-------TAGC---------GCATGCCACACTTACAATTATTGCGGTTTTAACACTTTGATCTTAAAC-TATTACTTTCCT-AAATTACTAAACAAAATAAA-------AATAAGCGGAGCAACTACAG-------CC-AAATC-AA-------CAGTATGACCAGTTGCAGACTA-CTTGAAATGC-----------CC-GCTGGTACTATAAAGCAGTTAGGTATATTTACGTT-TA------A------------------------TTTCAGTATATTTTCG-------TTAGCCAACCACACTGGCGTGGAGTTCAAAACAAAACAAA
droSec2 scaffold_0:14459864-14460255 - AACTGCAGTCGGTTTTTGTGTG--------TGA---------------------GCGGGTGTTTGGTTGCA-AGCGAAATGTAAGTAAAAGAA-TAGTAGTGGT----------------------CAATT-TCACGCGTGCGGTCATAAGAATCCGTCGCTTTG-TGT--GTTTACT--A--AAACT--AAAGTG--------------------------------------------T------------TACTG-AGCAGTTGCTCT-------TAGC---------GCATGCCACACTTACAATTATTGCGGTTTTAACACTTTGATCTTAAAC-TATTACTTTCCT-AAATTACTAAACAAAATAAA-------AATAAGCGGAGCAACTACAG-------CC-AAATC-AA-------CAGTATGACCAGTTGCAGGCTA-CTTGAAATGC-----------CC-GCTGGTACTATAAAGCAGTTTGGTATATTTACGTT-TA------A------------------------TTTCAGTATATTTTCG-------TTAGCCACCCACACTGGCGTGGAGTTCAAAACAAAACAAA
dm3 chr3R:7505119-7505511 + AACTGCAGTCGGTGATTGTGTG--------TGC---------------------GTGGGTGTTTGGTTGCAAAGCGAAATGTAAGTAAAAGAA-TAG-AGTGGT----------------------CAATT-TCACGCGTGCGGTCTTAAGAATCCGTCGCTTTG-TGT--GTTTACT--A--AAACT--AAAGTG--------------------------------------------T------------TACTT-AGCAGTTGCTCT-------TAGC---------GCATGCAACACTTACAATTATTGCGGTTTTAACACTTTGATCTTAAAC-TATTACTTTCCT-AAATTACTAAACAAAATAAA-------AATAAGCGGAGCAACTACAG-------CC-AAATC-AA-------CAGTATGGCCAGTTGCAGGCGACTCTGAAATGC-----------CC-GCTGGTGCTATAAAGCAATTTGGTATATTTACGTT-TA------A------------------------TTTCAGTATATTTTAG-------TTAGACAGCCACACTGGCGTGGAGTTCAAAACAAAACAAA
droEre2 scaffold_4770:14113056-14113444 - AACTTCAGTCGGTTT-TGTGTG--------TGT---------------------GTGGGTGTTTGGTTGCA-AGCGAAATGAAAGTAAAAGAA-TAGTGG-TGT----------------------CAATT-TCACGCGTGTGGTCTTAAAAATCCGTCGCTTAG-TGT--GTTTAGT--A--AAATT--AAAGTG--------------------------------------------T------------TACTT-AGCAATTGCTCT-------TAGC---------TCAGGCCACACTTACAATTATTACGGTATAAACACTGTGATCTTATAT-TATGTT--TTCT-AAATTACTAAACAAAATAAA-------AATAAGCAGAGCAACTACAG-------CC-AGATC-AA-------CAGTAGGACCAGTTGCGGGCGACTCTGAAATCC-----------CC-GCCAGTAATCAAAAGCATTTTGGTATATTAACGTT-GA------A------------------------GTGTAGTATATTTTCG-------TAGGCCAGTCACACTGGCGTGGAGTTCAAAACAAAACAAA
droYak3 3R:16916174-16916545 - AACTGCAGTCGGTGTTTGTGTG--------TGT---------------------GTGGGTGTTTGATTGCA-AGCGAAATGAAAGTAAAAGAA-TAGTAGTTGT----------------------CAATT-TCACGCGTGTGGTCTTAAAAATCCGTCGCTTTG---T--GTTTTGT--A--AAATA--AAACTG--------------------------------------------T------------TACTT-AGCAGTTGCTCT-------TAGC---------TCAGGCCACACTTACAATAATTGCGGTATAGACACTGTGATCTTATAG-TATGTTTTTCCT-AAATTACTAAACAAAATAAA-------AATAAGCAGAGCAACCACAG-------CC-AAATC-AA-------CAGTAGGACCAGTTGCGGGCGACTCTGAAATCC-----------GC-GCGAGTAAGCCAAACCATTTTGGTATATTTATGTT-GA------A------------------------ATGTAGTATATTTTTG--------------------------TGGAGTTCAAAACAAAACAAA
droEug1 scf7180000409797:1143585-1143965 + AACTGCAGTCGGTGTTTGTGTG--------GGT-------------------------GTTTTTGATTGCA-AGCGTAATGAAAGTAAAAGAA-TAGTAGTTGT----------------------CAATT-TCATG--TGTGGGCCTAAATATAAGTTATTTTG-TTT--GGTAACT--T--AAGTT--TAGGGT--------------------------------------------C------------TACTG-AACAGTTGCCTT-------TAAC---------TCAGGCCACACTTACAATTATTCTAGTTTAGACACTGTTTTCTTATACTTATGTTTTTCCT-AAATTACTAAACAAAATAAA-------AATAAGCAGCTCAACTACAG-------CC-AAATC-AA-------CAGTAGGACCTGTTGTTGGAAGGAGGGAAATAC-----------CA-GCCTG-----TAAGTC--ATTGGTATATTTATGTG-GT------G------------------------TTTTAGTATATTTTTG-------TAAAGCGGTCTCACTGAGCCGGAGTTCAAAACAAAACAAA
droBia1 scf7180000302113:3363039-3363409 + AACTGCAGTCGGTGTGTGTTGTTGTGTTG-TGT---------------------GGGTGTGTTTAATTGCA-GGCGAAATGAAA---AAAGAA-TAGTAGGTTG----------------------TAAAT-TCATG--TGTGATCTTAAGTTTATCGTGTTCTT-CGA--GTTTACT--A--GTAAT--TGAGGG--------------------------------------------C------------T--------------TCG-------TAGC---------AGAGGCCACACTTACAGTTGCTGCTGGGTAAACACTTTTCACCTAAACTTATGATTTTCCT-AAATTTCTAAACAAAATAAA-------AATATTCA----AGCTACAG-------CG-AAACG-AA-------GAGTAAGACCTTGACTGGCTGGCAGAGAAATGC-----------GC-TCCAC-----------TCCTTGGTATTTTTCTATT-TA------A--TTC-------------------ATTTAGTATATTTTCG-------TGCAGCGGTCACACTGGCCCGGAGTTAAAAACAAAACAAA
droTak1 scf7180000410579:171905-172264 - AACTGCAGTCGGTGTGTGTGGG--------T---------------------------GTGTTTGATTGCA-AGCGAAATGAAA--AAAAGAA-TAGTAGTTGT----------------------AAATT-TCATG--TGTGGGTTCGAGTATTGCTCGTTTTTACGT--GTAAACT--T--TAATT--TAAGGT--------------------------------------------A------------TAAAT-AACAGTTGCCCC-------TTAA---------ACAGGCCCCACTTACAATTGTTGCGGTCTAGACACTTTTCTCTTAAACTTATGTTTTCCCT-AAATTACTAAACAAAATAAA-------AATAAG--------CTACGG-------CC-AAATG-AA-------GAGTAAGACCGTTTCTGGGCGACCACAAAATGA-----------CA-GCCAC-----------TCTTTGGTATTTTTCTATA-AC------T------------------------TTTTAGTATATTT-------------AATGGTCACCCTAGACTGGAGTTCAAAACAAAACAAA
droEle1 scf7180000491080:2183445-2183822 - TGCC---------------------------------------------------TGTGTGTTTAATTGCA-AGCGAAATGAAAGTGAAAGAA-TAGT--TCGT----------------------CAATT-TCATG--TGTTAGCTTAAATGTTAGGCGTTTTT-CGT--GCTAACT--T--AAATT--AAAT-TTGCC-----------------------------------------------------------AGCATT-TCTCTTGGCAAGGATC---TCG---TTGCCCCACACTTACAATTATTGCGCTTTAAACACTGTTCTCTTATACTTAGGTTTTTC-TAAATTTACTAAACAAAATAAA-------AATAAGCA-----GCTACAG-------CCCAAATCAAA-------TAGTAAGACCAGCTGATGAAGTCATTGAAATCA-----------CCAACTGTTTCT--ACCCCTTTTTAGTATATTTATTATATATGTGTAG----T-------------------ATTTAGTATATTCCTA--TATCCTTAACCGGTCACACTGAAGTGGAGTTCAA-----AACAAA
droRho1 scf7180000779338:142297-142687 - T----------------GTGTG--------TGG---------------------GTGTGTGTTTAATTGCA-AGCGAAATGAAAGTAAAAGAA-TAG---TTGT----------------------TAATT-TCATG--TGTAGGCTCAAGTGTTAGGCGTTTTT-CGT--GTAAACT--A--AAATG--CAGGATTGCCGCCATT-------------------------CCA----GGT------------TGCTAAAACCGTTGCTCT-------TAAA---------CCAAACGACACTTACAATTATTGCGGTTTAAACACTGTTCTCTTATACTTAAGTTTTTCTT-AATTTACTAAACAAAATAAA-------AATAAGCA-----GCTACAG-------CCCAAATCAAA-------CAGTAATACCAGCTGTGGAAATCAGTGAAATCA-----------CCAACCGCAACT--ACTCCGGTTTGGTATATTTATGGTTTT-GTGTTTTGCAT-------------------ATTTAGTATATTTTCG-------TAAATCGGTCACACCAAACTGGAGTTCAA-----AACAAA
droFic1 scf7180000453488:321551-321948 - AACTGCAGTCGGTGTGTGTGGG--------TGT-------------------------A---TTGATTGCA-AGCGAAATGAAAGTAAAAGAA-TAG---TGGT----------------------CAATTTTCATA--TGTGGTCTTAAATGTTAGTCGTTTCT-GGT--GTAAGCT--A--AAAT---AAAGTTTGCC-CCTTT-------------------------CCA----GGT------------TGCTGCAGCAGTTGTTTT-------CAAC---------TCAGCCAACACTTACAATTATTTTGATTAAGACACTGTTCTCTTATACTTATGTTTTTCTT-AAATTACTAAACAAAATAAA-------AATAAGCA-----GCTACAG-------CCTAATTCAAA-------CAGTATGACCAGTTTCGTGTAAACATGAAATTG-----------CC-GCCAA-----TAA--CTGTTTGGTATCTTCCGGTA-TT------G--TACGGTTAA-------------T-----AATATTTAAGTACAGCCCACAGCGGTCACACTAATTGAGAGTTCAAAACAAAACAAA
droKik1 scf7180000302355:893759-894071 + TACTGCAGTCGTTGTGTGTGTT--------TGT-------------------------GTGTTT-----------GTGATGAAAGTAAAAAAAACAA---TTGTTAAT------------------TATGT-ACATG--TGTGTTCATA-GTGCTAGGAGTGTTT-CGT--GT----T--A--AAATT--AAAGTGCGCC-CATAT-------------------------CCA----GGTGAGTTTTCCAAC-GCTCCCACAGTTTGCCC-------TAAC---------TCATAGTACACTTACACTGATAGCCGGCTTAAAACTTTTCTCTTACACTTATGTTTTACTT-AAATTATAATACAAAATAAA-------AATAAGCAG-----CTGAAATTTCTGGCCCAACTCGAA-------TAGTGTGACCGGGTTGTTTAAACAGTGAAATGC-----------CA-GC----------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13340:13970208-13970557 + AACTGCAGTCAGTTAGTAATTGTGGG----TTT---------------------TTGTTATTGTTGTTGCG-AACATAATGAAATTATAGGAG-TAA---AATG----------------------CAAAT-TATAG--TGTAAGCT-AATTGTTATCGGGTTAT-CTTGTGG----GGGTAGGTATTTCGG------------------------------------------------G------------TGC--------------TTGGCAAACAGT---------TCATGAAGCACTTACAGTGATCACCGTTTAAAAACTGTGTTCTTATATTTATGTTTTT-CT-AAATGAAAATAAAAACTATA-------AAC-AG-----CAGCTACAGATTCG-----GGCTCAAAAAGTGTTTAATGTGACCGTCGGCGGGGACACGACAAAATC-----------CC-GCTAC-----------TCGCCG-------------AT--------TATTCGATTAA-----------------------------------------AAACCTATCGATTTGGCAGTTC-----AAAACAAA
droBip1 scf7180000395971:1176691-1177042 - AGCTGCAGTTAGTTAGTCAGTGTAAGTTGATTT---------------------GTGTTATTGTTGTTGCG-AATATAATGAAATTATAGCAA-TAA---TTGC----------------------AAA-T-TATAG--TGTAAGCT-AATTGTTCTTTGGTTAT-CTTGTGA----GGAAAAGTATTTGTG------------------------------------------------G------------TGT--------------TTGCCAAACAGT---------TCATAGCACACTTACAGTGATCAGCGTTTCAAATCTGGTTCCTTATTT-TATGAATTTC-T-AAAT-------GAAAATAAAAACTATAAAC-AG-----CAGCTAGAGAATCG-----GGCTCAAAAAGTGTTTAATGTGACCGTTTGCGGTGTGGAATAAAATACC----------TC-ACTA------TCAACCG------------------AT--------TATTCGATTAA-----------------------------------------AAACCTCTCCCC-CAGCAGTTC-----AAAACAAA
dp5 2:25857792-25858170 - AACTGCAATTGGTGTTAATACA--------TGT-------------------------GTGTT---TTGTG-AGTACAATGAAAGTAAAAGGT-TTGT------TAA---------------------ATGTT--------------------------GTTTTG---T--GTTCAGA--C--ACATT--A------GTCTGCATTAGCCTCTACGGAAGAGATTTTCCACCCAGATGGTAGAATTTTCCATCAACTG-AACGGTGGCTGA-------CGCCACATGATTATCCAGCAACACTTACTTTGATTGCTAAATAAAAACTTGG--CTTATTC-TAGTATTTTTAC-AATTTATTAAAAAAAA-----------ACTATGCA------CTAAAA-------TATA-------GTGGGCTGAGTGTGGCCGGCTTTTGGAATACAGAAAATACCAAAGAAATCGA-------------AAACCG------------------AT--------AAAGCGAGCAAAAACAGGGATGATATTTTGTACA--------------------------C----AGATTTTTT-----AAAACAAA
droPer2 scaffold_6:1077296-1077640 + AACTGCAATTGGTGTTAATACA--------TGT-------------------------GTGTT---TTGTG-AGTACAATGAAAGTAAAAGGT-TTGT------TAA---------------------ATGTT--------------------------GTTTTG---T--GTTCAGA--C--ACATT--A------GCCTGCATTAGACTCTACGGAAGAGATTTTCCACCCAGATGGGAGAATTTTCCATCAACTG-AACAGTGGCTTA-------CGCCACATAATTGTCCAGCAACACTTACTTTGATTGCTAAATAAAAACTTGG--CTTATTC-TAGTATTTTTAC-AATTTATTAAAAAAAA-----------ACTATGCA------CTAAAA-------TATA-------GTGGGCTGAGTGTGGCCGGTTTTTGGAATACAGAAAATACCAAAGAAA----------------------------------------------------------------------------------------TCG-------AAAGCCGATAA-------------AGCGAGCAAAAACAGG
droWil2 scf2_1100000004902:6783509-6783646 - GATTGTAGTAAGTGTGCGTGTG--------TGTGTGTTCGTGCGTTCAGTGCGTGTGTCTGTGTGTGTGCA-AGCACAATGAAAATAAAATAA-TTG---TTGTTAATCACATAATTGAGTTGTGTTAATT-TCACCCATAACATCTTAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:8555176-8555284 - TACTGTAATTAATGTGCGTGTG--------TGT---------------------GTGTGTGGT-------G-AGTGCA--------------------------------------------------------------------------------TGATTTG-TGT--GT---------------------------------------------------------------------------------------------------------TAGC---------GCATG--------------------------------------------------TTATTT-AAAACATGCAATAAAATAAT-------AATGTTAA--------------------------------------------------------------------------------------------------------------------------------T------------------------GTTAAT---------------------------------------------------TACATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AACTGCAGTCGGTTTTTTTGTG--------TGT---------------------GCGGGTGTTTGGTTGCA-AGCGAAATGTAAGTAAAAGAA-TAGTAGTGGT----------------------CAATT-TCACGCGTGCGGTCTTAAGAATCCGTCGCTTTG-TGT--GTTTACT--A--AAACT--AAAGTG--------------------------------------------T------------TACTG-AGCAGTTGCTCT-------TAGC---------GCATGCCACACTTACAATTATTGCGGTTTTAACACTTTGATCTTAAAC-TATTACTTTCCT-AAATTACTAAACAAAATAAA-------AATAAGCGGAGCAACTACAG-------CC-AAATC-AA-------CAGTATGACCAGTTGCAGACTA-CTTGAAATGC-----------CC-GCTGGTACTATAAAGCAGTTAGGTATATTTACGTT-TA------A------------------------TTTCAGTATATTTTCG-------TTAGCCAACCACACTGGCGTGGAGTTCAAAACAAAACAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................CTTAAGAATCCGTCGCTTTG-T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00202000000000000000
.......................................................................................................................................................................GT--GTTTACT--A--AAACT--AAAGTG--------------------------------------------T------------...............................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
................................T---------------------GCGGGTGTTTGGTTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.................................................................................TAAGTAAAAGAA-TAGTAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.............................................................................................................................................CGGTCTTAAGAATCCGTCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000100000000
...................................................................................................................................................TAAGAATCCGTCGCTTTG-TGT--.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
droSec2
AACTGCAGTCGGTTTTTGTGTG--------TGA---------------------GCGGGTGTTTGGTTGCA-AGCGAAATGTAAGTAAAAGAA-TAGTAGTGGT----------------------CAATT-TCACGCGTGCGGTCATAAGAATCCGTCGCTTTG-TGT--GTTTACT--A--AAACT--AAAGTG--------------------------------------------T------------TACTG-AGCAGTTGCTCT-------TAGC---------GCATGCCACACTTACAATTATTGCGGTTTTAACACTTTGATCTTAAAC-TATTACTTTCCT-AAATTACTAAACAAAATAAA-------AATAAGCGGAGCAACTACAG-------CC-AAATC-AA-------CAGTATGACCAGTTGCAGGCTA-CTTGAAATGC-----------CC-GCTGGTACTATAAAGCAGTTTGGTATATTTACGTT-TA------A------------------------TTTCAGTATATTTTCG-------TTAGCCACCCACACTGGCGTGGAGTTCAAAACAAAACAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......AGTCGGTTTTTGTGTG--------TGA---------------------GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGCGTGGAGTTCAAAA.........2011.0010010
....................................................................................................................................................................................................................................................................................................................................................................................A-------AATAAGCGGAGCAACTACA.............................................................................................................................................................................................................2020.5010001
dm3
AACTGCAGTCGGTGATTGTGTG--------TGC---------------------GTGGGTGTTTGGTTGCAAAGCGAAATGTAAGTAAAAGAA-TAG-AGTGGT----------------------CAATT-TCACGCGTGCGGTCTTAAGAATCCGTCGCTTTG-TGT--GTTTACT--A--AAACT--AAAGTG--------------------------------------------T------------TACTT-AGCAGTTGCTCT-------TAGC---------GCATGCAACACTTACAATTATTGCGGTTTTAACACTTTGATCTTAAAC-TATTACTTTCCT-AAATTACTAAACAAAATAAA-------AATAAGCGGAGCAACTACAG-------CC-AAATC-AA-------CAGTATGGCCAGTTGCAGGCGACTCTGAAATGC-----------CC-GCTGGTGCTATAAAGCAATTTGGTATATTTACGTT-TA------A------------------------TTTCAGTATATTTTAG-------TTAGACAGCCACACTGGCGTGGAGTTCAAAACAAAACAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................TG--------TGC---------------------GTGGGTGTTTGGTTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......AGTCGGTGATTGTGTG--------TGC---------------------GT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
....................................................................................................TGGT----------------------CAATT-TCACGCGTGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000
........................................................................................................................................GCGTGCGGTCTTAAGAATCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010
.......................................................................................................................................CGCGTGCGGTCTTAAGAATCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
....................TG--------TGC---------------------GTGGGTGTTTGGTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........TCGGTGATTGTGTG--------TGC---------------------GTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ACTGCAGTCGGTGATTGTGTG--------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAG-------TTAGACAGCCACACTGGCGT....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGAGTTCAAAACAAAA....1911.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCACACTGGCGTGGA.................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGTGTG--------TGC---------------------GTGGGTGTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....GCAGTCGGTGATTGTGTG--------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............TTGTGTG--------TGC---------------------GTGGGTGTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.........................................................GGTGTTTGGTTGCAAAGCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTGGCGTGGAGTTCAAA..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................CTTAAGAATCCGTCGCTTTG-......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................GTTGCAAAGCGAAATGTAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AGCAACTACAG-------CC-AAATC-............................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGCGTGGAGTTCAAAA.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CTT-AGCAGTTGCTCT-------TAGC---------GCA......................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................GTTTGGTTGCAAAGCGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................TGTGTG--------TGC---------------------GTGGGTGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................TAAGCGGAGCAACTACAG-------CT-CT................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................AA-------AATAAGCGGAGCAACTA...............................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................CTTAAGAATCCGTCGCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.............................................................................................................................................................TCGCTTTG-TGT--GTTTACG--C--.....................................................................................................................................................................................................................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AACTTCAGTCGGTTT-TGTGTG--------TGT---------------------GTGGGTGTTTGGTTGCA-AGCGAAATGAAAGTAAAAGAA-TAGTGG-TGT----------------------CAATT-TCACGCGTGTGGTCTTAAAAATCCGTCGCTTAG-TGT--GTTTAGT--A--AAATT--AAAGTG--------------------------------------------T------------TACTT-AGCAATTGCTCT-------TAGC---------TCAGGCCACACTTACAATTATTACGGTATAAACACTGTGATCTTATAT-TATGTT--TTCT-AAATTACTAAACAAAATAAA-------AATAAGCAGAGCAACTACAG-------CC-AGATC-AA-------CAGTAGGACCAGTTGCGGGCGACTCTGAAATCC-----------CC-GCCAGTAATCAAAAGCATTTTGGTATATTAACGTT-GA------A------------------------GTGTAGTATATTTTCG-------TAGGCCAGTCACACTGGCGTGGAGTTCAAAACAAAACAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGCCAGTCACACTGGCGTGGAGT...............2516.0060000006
droYak3
AACTGCAGTCGGTGTTTGTGTG--------TGT---------------------GTGGGTGTTTGATTGCA-AGCGAAATGAAAGTAAAAGAA-TAGTAGTTGT----------------------CAATT-TCACGCGTGTGGTCTTAAAAATCCGTCGCTTTG---T--GTTTTGT--A--AAATA--AAACTG--------------------------------------------T------------TACTT-AGCAGTTGCTCT-------TAGC---------TCAGGCCACACTTACAATAATTGCGGTATAGACACTGTGATCTTATAG-TATGTTTTTCCT-AAATTACTAAACAAAATAAA-------AATAAGCAGAGCAACCACAG-------CC-AAATC-AA-------CAGTAGGACCAGTTGCGGGCGACTCTGAAATCC-----------GC-GCGAGTAAGCCAAACCATTTTGGTATATTTATGTT-GA------A------------------------ATGTAGTATATTTTTG--------------------------TGGAGTTCAAAACAAAACAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
AACTGCAGTCGGTGTTTGTGTG--------GGT-------------------------GTTTTTGATTGCA-AGCGTAATGAAAGTAAAAGAA-TAGTAGTTGT----------------------CAATT-TCATG--TGTGGGCCTAAATATAAGTTATTTTG-TTT--GGTAACT--T--AAGTT--TAGGGT--------------------------------------------C------------TACTG-AACAGTTGCCTT-------TAAC---------TCAGGCCACACTTACAATTATTCTAGTTTAGACACTGTTTTCTTATACTTATGTTTTTCCT-AAATTACTAAACAAAATAAA-------AATAAGCAGCTCAACTACAG-------CC-AAATC-AA-------CAGTAGGACCTGTTGTTGGAAGGAGGGAAATAC-----------CA-GCCTG-----TAAGTC--ATTGGTATATTTATGTG-GT------G------------------------TTTTAGTATATTTTTG-------TAAAGCGGTCTCACTGAGCCGGAGTTCAAAACAAAACAAASizeHit CountTotal NormTotal
No Reads
droBia1
AACTGCAGTCGGTGTGTGTTGTTGTGTTG-TGT---------------------GGGTGTGTTTAATTGCA-GGCGAAATGAAA---AAAGAA-TAGTAGGTTG----------------------TAAAT-TCATG--TGTGATCTTAAGTTTATCGTGTTCTT-CGA--GTTTACT--A--GTAAT--TGAGGG--------------------------------------------C------------T--------------TCG-------TAGC---------AGAGGCCACACTTACAGTTGCTGCTGGGTAAACACTTTTCACCTAAACTTATGATTTTCCT-AAATTTCTAAACAAAATAAA-------AATATTCA----AGCTACAG-------CG-AAACG-AA-------GAGTAAGACCTTGACTGGCTGGCAGAGAAATGC-----------GC-TCCAC-----------TCCTTGGTATTTTTCTATT-TA------A--TTC-------------------ATTTAGTATATTTTCG-------TGCAGCGGTCACACTGGCCCGGAGTTAAAAACAAAACAAASizeHit CountTotal NormTotal
No Reads
droTak1
AACTGCAGTCGGTGTGTGTGGG--------T---------------------------GTGTTTGATTGCA-AGCGAAATGAAA--AAAAGAA-TAGTAGTTGT----------------------AAATT-TCATG--TGTGGGTTCGAGTATTGCTCGTTTTTACGT--GTAAACT--T--TAATT--TAAGGT--------------------------------------------A------------TAAAT-AACAGTTGCCCC-------TTAA---------ACAGGCCCCACTTACAATTGTTGCGGTCTAGACACTTTTCTCTTAAACTTATGTTTTCCCT-AAATTACTAAACAAAATAAA-------AATAAG--------CTACGG-------CC-AAATG-AA-------GAGTAAGACCGTTTCTGGGCGACCACAAAATGA-----------CA-GCCAC-----------TCTTTGGTATTTTTCTATA-AC------T------------------------TTTTAGTATATTT-------------AATGGTCACCCTAGACTGGAGTTCAAAACAAAACAAASizeHit CountTotal NormTotal
No Reads
droEle1
TGCC---------------------------------------------------TGTGTGTTTAATTGCA-AGCGAAATGAAAGTGAAAGAA-TAGT--TCGT----------------------CAATT-TCATG--TGTTAGCTTAAATGTTAGGCGTTTTT-CGT--GCTAACT--T--AAATT--AAAT-TTGCC-----------------------------------------------------------AGCATT-TCTCTTGGCAAGGATC---TCG---TTGCCCCACACTTACAATTATTGCGCTTTAAACACTGTTCTCTTATACTTAGGTTTTTC-TAAATTTACTAAACAAAATAAA-------AATAAGCA-----GCTACAG-------CCCAAATCAAA-------TAGTAAGACCAGCTGATGAAGTCATTGAAATCA-----------CCAACTGTTTCT--ACCCCTTTTTAGTATATTTATTATATATGTGTAG----T-------------------ATTTAGTATATTCCTA--TATCCTTAACCGGTCACACTGAAGTGGAGTTCAA-----AACAAASizeHit CountTotal NormTotal
No Reads
droRho1
T----------------GTGTG--------TGG---------------------GTGTGTGTTTAATTGCA-AGCGAAATGAAAGTAAAAGAA-TAG---TTGT----------------------TAATT-TCATG--TGTAGGCTCAAGTGTTAGGCGTTTTT-CGT--GTAAACT--A--AAATG--CAGGATTGCCGCCATT-------------------------CCA----GGT------------TGCTAAAACCGTTGCTCT-------TAAA---------CCAAACGACACTTACAATTATTGCGGTTTAAACACTGTTCTCTTATACTTAAGTTTTTCTT-AATTTACTAAACAAAATAAA-------AATAAGCA-----GCTACAG-------CCCAAATCAAA-------CAGTAATACCAGCTGTGGAAATCAGTGAAATCA-----------CCAACCGCAACT--ACTCCGGTTTGGTATATTTATGGTTTT-GTGTTTTGCAT-------------------ATTTAGTATATTTTCG-------TAAATCGGTCACACCAAACTGGAGTTCAA-----AACAAASizeHit CountTotal NormTotal
No Reads
droFic1
AACTGCAGTCGGTGTGTGTGGG--------TGT-------------------------A---TTGATTGCA-AGCGAAATGAAAGTAAAAGAA-TAG---TGGT----------------------CAATTTTCATA--TGTGGTCTTAAATGTTAGTCGTTTCT-GGT--GTAAGCT--A--AAAT---AAAGTTTGCC-CCTTT-------------------------CCA----GGT------------TGCTGCAGCAGTTGTTTT-------CAAC---------TCAGCCAACACTTACAATTATTTTGATTAAGACACTGTTCTCTTATACTTATGTTTTTCTT-AAATTACTAAACAAAATAAA-------AATAAGCA-----GCTACAG-------CCTAATTCAAA-------CAGTATGACCAGTTTCGTGTAAACATGAAATTG-----------CC-GCCAA-----TAA--CTGTTTGGTATCTTCCGGTA-TT------G--TACGGTTAA-------------T-----AATATTTAAGTACAGCCCACAGCGGTCACACTAATTGAGAGTTCAAAACAAAACAAASizeHit CountTotal NormTotal
No Reads
droKik1
TACTGCAGTCGTTGTGTGTGTT--------TGT-------------------------GTGTTT-----------GTGATGAAAGTAAAAAAAACAA---TTGTTAAT------------------TATGT-ACATG--TGTGTTCATA-GTGCTAGGAGTGTTT-CGT--GT----T--A--AAATT--AAAGTGCGCC-CATAT-------------------------CCA----GGTGAGTTTTCCAAC-GCTCCCACAGTTTGCCC-------TAAC---------TCATAGTACACTTACACTGATAGCCGGCTTAAAACTTTTCTCTTACACTTATGTTTTACTT-AAATTATAATACAAAATAAA-------AATAAGCAG-----CTGAAATTTCTGGCCCAACTCGAA-------TAGTGTGACCGGGTTGTTTAAACAGTGAAATGC-----------CA-GC----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
AACTGCAGTCAGTTAGTAATTGTGGG----TTT---------------------TTGTTATTGTTGTTGCG-AACATAATGAAATTATAGGAG-TAA---AATG----------------------CAAAT-TATAG--TGTAAGCT-AATTGTTATCGGGTTAT-CTTGTGG----GGGTAGGTATTTCGG------------------------------------------------G------------TGC--------------TTGGCAAACAGT---------TCATGAAGCACTTACAGTGATCACCGTTTAAAAACTGTGTTCTTATATTTATGTTTTT-CT-AAATGAAAATAAAAACTATA-------AAC-AG-----CAGCTACAGATTCG-----GGCTCAAAAAGTGTTTAATGTGACCGTCGGCGGGGACACGACAAAATC-----------CC-GCTAC-----------TCGCCG-------------AT--------TATTCGATTAA-----------------------------------------AAACCTATCGATTTGGCAGTTC-----AAAACAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................TTATCGGGTTAT-CTTGTGG----GG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droBip1
AGCTGCAGTTAGTTAGTCAGTGTAAGTTGATTT---------------------GTGTTATTGTTGTTGCG-AATATAATGAAATTATAGCAA-TAA---TTGC----------------------AAA-T-TATAG--TGTAAGCT-AATTGTTCTTTGGTTAT-CTTGTGA----GGAAAAGTATTTGTG------------------------------------------------G------------TGT--------------TTGCCAAACAGT---------TCATAGCACACTTACAGTGATCAGCGTTTCAAATCTGGTTCCTTATTT-TATGAATTTC-T-AAAT-------GAAAATAAAAACTATAAAC-AG-----CAGCTAGAGAATCG-----GGCTCAAAAAGTGTTTAATGTGACCGTTTGCGGTGTGGAATAAAATACC----------TC-ACTA------TCAACCG------------------AT--------TATTCGATTAA-----------------------------------------AAACCTCTCCCC-CAGCAGTTC-----AAAACAAASizeHit CountTotal NormTotal
No Reads
dp5
AACTGCAATTGGTGTTAATACA--------TGT-------------------------GTGTT---TTGTG-AGTACAATGAAAGTAAAAGGT-TTGT------TAA---------------------ATGTT--------------------------GTTTTG---T--GTTCAGA--C--ACATT--A------GTCTGCATTAGCCTCTACGGAAGAGATTTTCCACCCAGATGGTAGAATTTTCCATCAACTG-AACGGTGGCTGA-------CGCCACATGATTATCCAGCAACACTTACTTTGATTGCTAAATAAAAACTTGG--CTTATTC-TAGTATTTTTAC-AATTTATTAAAAAAAA-----------ACTATGCA------CTAAAA-------TATA-------GTGGGCTGAGTGTGGCCGGCTTTTGGAATACAGAAAATACCAAAGAAATCGA-------------AAACCG------------------AT--------AAAGCGAGCAAAAACAGGGATGATATTTTGTACA--------------------------C----AGATTTTTT-----AAAACAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........TTGGTGTTAATACA--------TGT-------------------------GTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGCCGGCTTTTGGAAT.............................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TA-------GTGGGCTGAGTGTGGCCGG.......................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................ATCAACTG-AACGGTGGCTGA-------C.....................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................C--ACATT--A------GTCTGCATTAGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................ATGTT--------------------------GTTTTG---T--GTTCAGA--C--.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
AACTGCAATTGGTGTTAATACA--------TGT-------------------------GTGTT---TTGTG-AGTACAATGAAAGTAAAAGGT-TTGT------TAA---------------------ATGTT--------------------------GTTTTG---T--GTTCAGA--C--ACATT--A------GCCTGCATTAGACTCTACGGAAGAGATTTTCCACCCAGATGGGAGAATTTTCCATCAACTG-AACAGTGGCTTA-------CGCCACATAATTGTCCAGCAACACTTACTTTGATTGCTAAATAAAAACTTGG--CTTATTC-TAGTATTTTTAC-AATTTATTAAAAAAAA-----------ACTATGCA------CTAAAA-------TATA-------GTGGGCTGAGTGTGGCCGGTTTTTGGAATACAGAAAATACCAAAGAAA----------------------------------------------------------------------------------------TCG-------AAAGCCGATAA-------------AGCGAGCAAAAACAGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................ATTGTCCAGCAACACTTACTT........................................................................................................................................................................................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................................................ACTG-AACAGTGGCTTA-------CGCCA.................................................................................................................................................................................................................................................................................................................................2111.001010000
droWil2
GATTGTAGTAAGTGTGCGTGTG--------TGTGTGTTCGTGCGTTCAGTGCGTGTGTCTGTGTGTGTGCA-AGCACAATGAAAATAAAATAA-TTG---TTGTTAATCACATAATTGAGTTGTGTTAATT-TCACCCATAACATCTTAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......GTAAGTGTGCGTGTG--------TGTGTGTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24140.07100100
droGri2
TACTGTAATTAATGTGCGTGTG--------TGT---------------------GTGTGTGGT-------G-AGTGCA--------------------------------------------------------------------------------TGATTTG-TGT--GT---------------------------------------------------------------------------------------------------------TAGC---------GCATG--------------------------------------------------TTATTT-AAAACATGCAATAAAATAAT-------AATGTTAA--------------------------------------------------------------------------------------------------------------------------------T------------------------GTTAAT---------------------------------------------------TACATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:53 PM