ID:

dsi_10928

 Coordinate:

3l:18456641-18456790 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.0 -39.0 -38.9

Flybase annnotation

CDS [3l_18456791_18456814_-]; five_prime_UTR [3l_18456815_18457008_-]; exon [3l_18456791_18457008_-]; intron [3l_18444130_18456790_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGTATCTATACCATATAGATCCGACCATGGCGACCGAAACTACAAAAATGGTAAGTTTGATTTTGAGACCGCGGTAATTACTTGTGATTAGGCAGGTGATTAGTGATTAGTGGTTTGCAGCTGGGAATTTGGGAACGTGGCGGTATTCCGTCTTTTCCGGTTAATTGCTTTTCGTTGACCTTGAGAACCTGCCTTAATGCCCGGCAAGCCCCTAGGACTTTTTATGACGAACAGTTAAGATCCGACTGAA
**************************************************.(((((((....((((((((((..(((((((((((......))))))))))).......))))))).)))....)))))))((((...(((((....)))))..))))(((((((........)))))))(((((.......)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M024
male body		 M053
female body
 SRR902009
testis
 GSM343915
embryo
 M023
head
 SRR618934
dsim w501 ovaries
...........................TGGCGACCGAAACTACAAAAATGAG...................................................................................................................................................................................................... 25 2 1 45.00 45 15 0 16 10 4 0 0 0 0 0 0 0
.........................CATGGCGACCGAAACTACAAAAATGAG...................................................................................................................................................................................................... 27 2 1 24.00 24 10 0 6 2 6 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACAAAAATGGAG..................................................................................................................................................................................................... 26 2 1 12.00 12 10 0 0 0 2 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACAAAAATGGT...................................................................................................................................................................................................... 25 0 1 11.00 11 7 0 2 1 1 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACGAAAATGAG...................................................................................................................................................................................................... 25 3 1 11.00 11 0 11 0 0 0 0 0 0 0 0 0 0
.........................CATGGCGACCGAAACTACAAAAATGGAG..................................................................................................................................................................................................... 28 2 1 8.00 8 8 0 0 0 0 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACGAAAATGAGAA.................................................................................................................................................................................................... 27 3 1 5.00 5 0 5 0 0 0 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACGAAAATGAGA..................................................................................................................................................................................................... 26 3 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACGAAAATGAA...................................................................................................................................................................................................... 25 3 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0
.......ATACCATATAGATCCGACCATGGC........................................................................................................................................................................................................................... 24 0 1 4.00 4 0 0 0 0 0 2 1 0 0 1 0 0
...........................TGGCGACCGAAACTACGAAAATGA....................................................................................................................................................................................................... 24 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.........................CATGGCGACCGAAACTACAAAAATGGT...................................................................................................................................................................................................... 27 0 1 3.00 3 1 0 1 0 1 0 0 0 0 0 0 0
.........................CATGGCGACCGAAACTACGAAAATGAG...................................................................................................................................................................................................... 27 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................CAACCATGGCGACCGAAACTACAAAAA.......................................................................................................................................................................................................... 27 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
.............TATAGATCCGACCATGGC........................................................................................................................................................................................................................... 18 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
...........................TGGCGACCGAAACTACAAAAATGG....................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACAAAAATGAGA..................................................................................................................................................................................................... 26 2 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACAAAAATGAGT..................................................................................................................................................................................................... 26 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GGGAATTCGGGAGCGTCGCG............................................................................................................ 20 3 2 1.50 3 0 0 0 0 0 0 0 0 3 0 0 0
...........................TGGCGACCGAAACTGCAAAAATGAG...................................................................................................................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................TCCAACCATGGCGACCGAAACTACAAAAA.......................................................................................................................................................................................................... 29 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACAAAAATGA....................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......ATACCATATAGATCCGACC................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............ATATAGATCCGACCATGGC........................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................GTGATTAGGCAGGTGATTAGT.................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................CATGGCGACCGAAACTACAAAAATG........................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................CATGGCGACCGAAACTACAAAAATGGTTA.................................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTTCAAAAATGAG...................................................................................................................................................................................................... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............ATAGATCCGACCATGGCGAC........................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................CATGGCGACCGATACTACAAAAATG........................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................CATGGCGACCGAAACTACAAAAATGAGT..................................................................................................................................................................................................... 28 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................TGGCGACCGAGACTACAAAAATGGT...................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........ACCATATAGATCCGACCATGGC........................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............ATATAGATCCGACCATGGCGACCGAAAC.................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...................TACAACCATGGCGACCGAAACTACGAAAA.......................................................................................................................................................................................................... 29 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........CATATAGATCCGACCATGGCGACC....................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................TGGCGACCGAAACTACAAAAATGCGC..................................................................................................................................................................................................... 26 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................CAACCATGGCGACCGAAACTACGAA............................................................................................................................................................................................................ 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................CATGGCGACCGAAACTACGAAAATGA....................................................................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACAAAAATGGAGT.................................................................................................................................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACGAAAATGAAAA.................................................................................................................................................................................................... 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............ATAGATCCGACCATGGCGACCGAAACT................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............ATATAGATCCGACCATGG............................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................CATGGCGACCGAAACTACAAAAATGA....................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACAAAAATGTGA..................................................................................................................................................................................................... 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......ATACCATATAGATCCGAC................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................GGCGACCGAAACTACGAAAATGAGA..................................................................................................................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACGAAAA.......................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACAAAAA.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......ATACCATATAGATCCGACCATGGCGAC........................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................TGGCGACCGAAACTACAAAAATGGTT..................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACAAAAATAAG...................................................................................................................................................................................................... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................TGGCGACCGAAACTACAAAAATGGTA..................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................AATTGGTTTTCGTCGACC...................................................................... 18 2 4 0.50 2 0 0 0 0 0 0 1 0 0 0 1 0
........................................................................................TAGGCATGTGATCAGTGAT............................................................................................................................................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................GTGAATTGATTATCGTTGACC...................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................TCAATTGGTTTTCGTCGACC...................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................CTTCTCGTTGATCCTGAGAA............................................................... 20 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................GGGAATTCGGGAGCGTCGC............................................................................................................. 19 3 18 0.11 2 0 0 0 0 0 0 0 0 2 0 0 0
.............................................................................TTACTTGTGTTTAGG.............................................................................................................................................................. 15 1 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................TGTTGAGGCCGCGGTA.............................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCATAGATATGGTATATCTAGGCTGGTACCGCTGGCTTTGATGTTTTTACCATTCAAACTAAAACTCTGGCGCCATTAATGAACACTAATCCGTCCACTAATCACTAATCACCAAACGTCGACCCTTAAACCCTTGCACCGCCATAAGGCAGAAAAGGCCAATTAACGAAAAGCAACTGGAACTCTTGGACGGAATTACGGGCCGTTCGGGGATCCTGAAAAATACTGCTTGTCAATTCTAGGCTGACTT
**************************************************.(((((((....((((((((((..(((((((((((......))))))))))).......))))))).)))....)))))))((((...(((((....)))))..))))(((((((........)))))))(((((.......)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
....................GGTTGGTACCGCTGGCTTTGATGTTT............................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0
...........................ACCGCTGGCTTTGATGTTTTTACCAAT.................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
.....................GTTGGTACCGCTGGCTTTGATGTTT............................................................................................................................................................................................................ 25 1 1 1.00 1 0 1 0 0
....................................................................................ACTAAGCCGTCCACTCA..................................................................................................................................................... 17 2 7 0.86 6 3 3 0 0
....AAATATGGTATATCTA...................................................................................................................................................................................................................................... 16 1 16 0.38 6 2 1 3 0
....................................................................................ACTAAGCCGTCCACTC...................................................................................................................................................... 16 2 20 0.25 5 2 2 1 0
....................................................................................ACTAAGCCGTCCACTCAAC................................................................................................................................................... 19 3 20 0.25 5 3 2 0 0
....................................................................................ACTAAGCCGTCCACTCAACA.................................................................................................................................................. 20 3 6 0.17 1 1 0 0 0
.....GATATGGTACCTCTAG..................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0
....................GGCTGGCACTGCTGGGTT.................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1
...........................................................................................................................................................................................................................AAAATACGGCTTGTCAC.............. 17 2 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:18456591-18456840 - dsi_10928 AGTATC--------TATACC-----A--TAT--AGAT--CCGACCATGGCGACCGAAACTACAAAAATGGTAAGT------T--TGATTTTGAGACC----------GCGGTAATTACTTGTG--------------------ATTAGG--CA------GGTGATTAGTGATTAGTGGTTTGCAGCTG------------------GG-AATTTGG--GAACGTGGCGGTA-TTC-----C-GTC--TT--TTCC--GGTTAATTGCTTTT-CGTTGACCTTGAGAACCTG------------CCTTAATGC-CC-G-GCAAGCCCCTAGGACTT--TTTAT-------------GACGAAC----------------A-------GTTAAGATCCG--------------ACTGAA
droSec2 scaffold_19:801421-801670 - AGTATC--------TATACC-----A--TAT--AGAT--CCAACCATGGCGACCGAAACTACAAAAATGGTAAGT------T--TGATTTTGAGACC----------GCGGTAATTACTTGTG--------------------ATTAGG--CA------GGTGATTAGTGATTAGTGGTTTGCAGCTA------------------GG-AATTTGG--GAACGTGGCGGTA-TTC-----C-GTC--TT--TTCC--GGTTAATTGCTTTT-CGTTGACCTTGAGAACCTG------------CCTTAATGC-CC-G-GCAAGCCCCTAGGACTT--TTTAT-------------GACGAAC----------------T-------GTTAAGATCCG--------------ACTGAA
dm3 chr3L:18838936-18839187 - AGTATC--------TATACC-----A--TAT--AGATCCCCAACCATGGCGACCGAAACTACAAAAATGGTAAGT------T--TGATTTTGAGAAA----------GCGGTAATTACTTGTG--------------------ATTAGG--CA------GGTGATTAGTGATAAGTGGTTTGCAGCTA------------------GA-AATTTGG--GAACGTGGCGGCA-TTT-----C-GTC--TT--TTCC--GGTTAATTGCTTTT-CGTTGACCTTGAGAACCTG------------CCTTAATGC-CC-G-GCAAGCCCCTAGGACTT--TT-------------CGCGACGAAC----------------T-------GTTAAGATCCG--------------ACTGAA
droEre2 scaffold_4784:15095602-15095885 + ACTATC--------TATACC-----A--TAT--AGATCCCCAACCATGGCGACCGAAACTACAAAAATGGTAAGT------T--CGATTTTAAGTCC----------GTGGTAATTATATATGTATAATATATAATAGGTGTTGTTAGG--CTTTCACTTGTGACTA-------GTGGCTTGCAGGTG------------------GG-AATTTGG--GAACGTGGCAGTG-TTC-----TTCGTG-TT--TTTC--GGTTAATTGCTTTT-CGTTGACCTTG--AACTCG---------CCGCCTTAATGC-CC-G-GCAAGCCCCTAGTACTT--TTGACGGCTTT---TCGTAACGAAC----------------C-------TTTGAGATCCG--------------ATTGAA
droYak3 3L:15234243-15234498 + ACTATC--------TATACC-----A--TAT--AGAT-CCCAATCATGGCGACCGAAACCACAAAAATGGTAAGT------T--CGATTTTGAGTCCG----T--CGTTGGTAATTGCTTGTG--------------------ATTAGG--CTTTCACTTGTGACTA--------TGG----------------------------CT-ATATGGG--GAACGTGGCAGTG-TTC-----CTTGTG-TT--TGTC--GGTTAATTGCTTTT-CGTTGACCTTG--AACCCG---------TCGCCTTAATGC-CC-G-GCAAGCCCCTAGCACTT--TTGACGGCTTT---TCGAAACGAAC----------------T-------GTTGAGATCCG--------------ATTGCA
droEug1 scf7180000409471:653084-653340 + AC------------TATATA-----G--TAT--AGAT---CCATCATGGCTACCGAAACAACGAAAATGGTAAGT------T--TGATTTAGAGC-T----------AAAGTAATTACTTGTG--------------------ATT--------------------AG-------T-ATTTCCTGCCG------AGGGAATTTTGGGG-ATTTTGG--GAACGTGGCAACA-TTT-----C-CAC--AC--TTTC--GGTTAATTGCTTTT-CTTTGACCTTG--AACCTG------------CTTAAATGC-CG-G-GCAAACCTCTCAGGCTT--TTAACGGCTTT---TCGTAACGAAC----------------A-------TTTAAGATTCGAATCGGATCACCCGCTAG-A
droBia1 scf7180000302529:665133-665360 + TC------------CATATA-----G--TAT--AGAT---CAGCCATGGCGACCGAGACCACGAAAATGGTGAGT------T--CGATTTC-TGTTC----------ATGCTAATTACCCGTG--------------------ATTAGG--GA-------GTGATTAG-------T-GCTTCCTGCTG------------------GA-ACTCTGG--GAACGTGGCGAGG-TTT-----C-CA----C--CACC--GGTTAATTGTTTTT-CGATGACCTTG--AACCTG------------C-CTAATGC-CC-G-GCAAGCC-CTAGGACTT--TT-GCGGCTTT---CCGCA---------------------------------GAGATCCG--------------AGAGAA
droTak1 scf7180000415184:215969-216213 + TC------------TATATT-----A--TAA--AGAT---CAGCTATGGCGACCGAAACTACGAAAATGGTGAGT------T--TGATTTCTAGTTC----------ATGGTAATTACCTGTG--------------------ATTAGA--GA------AGTGATTAG-------T-ATTTCCTGTTG------------------GA-ACTTTGG--GAACGTGGAAAAA-TTT-----T-CAC--AT--TTTC--GGTTAATTGTTTTT-CGTTGACCTTG--AACCTG-----------CCTTTAATGC-CC-G-GCAAGCCCCTAAGACTT--TTAACGGCTTT---TCGTAGCGAAC----------------T-------GTTGAGATCCG--------------ATAG-A
droEle1 scf7180000490993:1749874-1750125 - ACTATA--------TATA-------A--AAT--AGAT---CAACCATGGCGACTGAAACTACAAAAATGGTGAGT------T--TGATATTCAGTTT----------ATGGTAATTACTTGTG--------------------ATTAGGAAAA------GGTGATTAG-------C-ATTTCCTGCTG------------------GG-ACTTTGG--GAACGTGGCAC-ATTTT-----CTCAT--AT--ATTC--GGTTAATTGTTTTT-CGCTGACCTTG--AACCTG-----------GTTTTAATGCGCC-G-ACAAGCCCCTAGGACTT--TTAACGGCTTT---TCGCACCGACC----------------T-------TTTACGATCCG--------------GTAGAA
droRho1 scf7180000779212:8937-9183 + AC------------TATATA-----A--TAT--AGAT---CAACCATGGCGACCGAAACAACGAAAATGGTAAGT------T--TGATTTTCAGTTC----------ATGGTAATTACTTGTG--------------------ATTAGA--GA------GGTGATTAG-------C-ATTTCCTGCTG------------------GG-ACTTTGG--GAACGTGGCAACC-TTT-----T-CAC--TT--ATTC--GGTTAATTGTTTTT-CGTTGACCTTG--AACCTG-----------GCCTTAATGC-CC-G-GCAAGCCCCTAGGACTTACTTAACGGCTTT---CCGTAACAAAC----------------T-------TTAACGATCCG--------------ATAG-A
droFic1 scf7180000453824:195525-195769 - G-TATA--------TATA-------T--TAA--AGAT---CAACCATGGCTACCGAAACCACGAAAATGGTGAGT------T--TGATTTCGAGCTC----------CTGGTAATTACTCGTG--------------------ATTAGA--GA------GGTGATTAG-------C-ATTTCCTGCTG------------------CG-ACATTGG--GAACGTGGCAGCG-GTT-----T-CAC--AT--TTTG--GGTTAATGGTTTTT-CTTTGACCTTG--AACCGG------------CTTTAATGC-CC-G-CCAAGCCCCTAGGACTT--TTAACGGCTTT---TCATAACGACA----------------A-------ATTGCGATCTA--------------ATGG-A
droKik1 scf7180000302248:131747-131981 + AC------------TACATA-----G--TAT--AGAA-TTGAGCCATGGCTACCGAAACCACAAAGATGGTAAGT------TTTTGATATC-AGATT----------TTGGTAATTACGTGTG--------------------ATTAGA--AA------GGTGATTAG-------C-ATTTCCCGTTA------------------GAGGTATTGAAAAAACGTGGCAAAG-TGC-GGTCT-G-C--TTTTTGTGAGGTTTAATTGTTTTCGTGTTGACCTTG--AACCTG------------GTTTAATGA-CA-GGCCAAGCCCCTAGGTATT--TTTAGGGGTTT---TGGT--------------------------------------------------------------
droAna3 scaffold_13337:18597289-18597564 + CACGAC--------TATTCC-----ACATAT--TGAT---CAGCCATGGCAACTGAAACAACGAAAATGGTAAGA------T--TGATTTTCATC-GAGAGGTCTATATGGTAATTACTTGTG--------------------ATTAGA--GA------GGTGATTAG-------T----------T----------------------AGATTGG--GAACATGGCCATA-TTTTTTTCC-CTCT-AT--TTTCGTGTTTAATTGCTTTT-CGTTGACCTTG--AACCAG------------GTGTAATGC-GTGGGACAAGCCCCTTGGCTTT--TT--CGGATTT---TCCTCAAAAACACA---AAAAAAAGTATAAAAGTTGTTACGACGCGA-------------ATAG-A
droBip1 scf7180000396741:1785897-1786140 + AC------------CGAACC-----ACACAC--TGAT---CAGCCATGGCAACCGAAACAACGAAAATGGTAAGA------T--TCATTTTCTTC-GAGAGGTGTATATGGTAATTACTTGCG--------------------ATTAAA--AA------GGTGATTAG-------T-ATTTCCTGTGG------------------------------------------------------------------C--GTTCAATTGTTTTT-CGTTGACCTTG--AATCAG------------GTGTAATGC-GTGTGACAAGCCCCTTGG-CTT--TTTACAGATTT---TCCTAAAAAAAAAAACAAAAAAAAA-ATCTTAGTTTTTATGACGCG--------------ATAA-A
dp5 XR_group6:4117164-4117473 + AGCATCGAAAGATATATACCATATAC--CATAATTAC---CAGCCATGGCAACCGAGACTACCAAAATGGTGAGTGCTGATT--CGATTTTGATTCGA----TTCCCATGTTAATTACTCGTG--------------------ATTAGA--AA------GGTGATTAG-------C-ATTTCCTGTTGATTTCTATTCAATTTCGAGA-ACTTCGA--GAACGTGGCAACA-TTG-----T-CTCGCTTTCC--G--TTTTACCTGC-------TTGACCTTG--AACCTGTGTTTGTTTCGGGCCTAATTC-GG-G-ACAGGCCCCTAGGACTT--TAAACGGCTTTTTTTCGAAATGAAC----------------TGTTGG--TTTATGGCCCG--------------ATAGAA
droPer2 scaffold_9:2406878-2407186 + AGAATCGAAAGATATATACCATATAC--CATAATTAC---CAGCCATGGCAACCGAGACTACCAAAATGGTGAGTGCTGATT--CGATTTTGATTCGA----TTCCCATGTTAATTACTCGTG--------------------ATTAGA--AA------GGTGATTAG-------C-ATTTCCTGTTGATTTCTATTCAATTTCGAGA-ACTTCGA--GAACGTGGCAACA-TTG-----T-CTCGCTTTCC--G--TTTTACCTGC-------TTGACCTTG--AACCTGTGTTTGTTTCGGGCCTAATTC-GA-G-ACAGGCCCCTAGGACTT--TTAACGGCTTT-TTTCGAAATGAAC----------------TGTTGG--TTTATGGCCCG--------------ATAGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGTATC--------TATACC-----A--TAT--AGAT--CCGACCATGGCGACCGAAACTACAAAAATGGTAAGT------T--TGATTTTGAGACC----------GCGGTAATTACTTGTG--------------------ATTAGG--CA------GGTGATTAGTGATTAGTGGTTTGCAGCTG------------------GG-AATTTGG--GAACGTGGCGGTA-TTC-----C-GTC--TT--TTCC--GGTTAATTGCTTTT-CGTTGACCTTGAGAACCTG------------CCTTAATGC-CC-G-GCAAGCCCCTAGGACTT--TTTAT-------------GACGAAC----------------A-------GTTAAGATCCG--------------ACTGAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................TGGCGACCGAAACTACAAAAATGAG..........................................................................................................................................................................................................................................................................................................................................................25145.004500000016151040000000
............................................CATGGCGACCGAAACTACAAAAATGAG..........................................................................................................................................................................................................................................................................................................................................................27124.0024000000610260000000
..............................................TGGCGACCGAAACTACAAAAATGGAG.........................................................................................................................................................................................................................................................................................................................................................26112.0012000000010020000000
..............................................TGGCGACCGAAACTACAAAAATGGT..........................................................................................................................................................................................................................................................................................................................................................25111.001100000027110000000
............................................CATGGCGACCGAAACTACAAAAATGGAG.........................................................................................................................................................................................................................................................................................................................................................2818.00800000008000000000
...............ATACC-----A--TAT--AGAT--CCGACCATGGC...............................................................................................................................................................................................................................................................................................................................................................................2414.00401200000000100000
............................................CATGGCGACCGAAACTACAAAAATGGT..........................................................................................................................................................................................................................................................................................................................................................2713.00300000011010000000
............................TAT--AGAT--CCGACCATGGC...............................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
..............................................TGGCGACCGAAACTACAAAAATGG...........................................................................................................................................................................................................................................................................................................................................................2412.00200000002000000000
..............................................TGGCGACCGAAACTACAAAAATGAGT.........................................................................................................................................................................................................................................................................................................................................................2612.00200000002000000000
..............................................TGGCGACCGAAACTACAAAAATGA...........................................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
...............ATACC-----A--TAT--AGAT--CCGACC....................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.........................A--TAT--AGAT--CCGACCATGGC...............................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
........................................................................................................................GTG--------------------ATTAGG--CA------GGTGATTAGT........................................................................................................................................................................................................................................................2111.00100010000000000000
............................................CATGGCGACCGAAACTACAAAAATG............................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
.............................AT--AGAT--CCGACCATGGCGAC............................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
............................................CATGGCGACCGAAACTACAAAAATGAGT.........................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.................ACC-----A--TAT--AGAT--CCGACCATGGC...............................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.........................A--TAT--AGAT--CCGACCATGGCGACCGAAAC......................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
...................C-----A--TAT--AGAT--CCGACCATGGCGACC...........................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
..............................................TGGCGACCGAAACTACAAAAATGCGC.........................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
..............................................TGGCGACCGAAACTACAAAAATGGAGT........................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
.............................AT--AGAT--CCGACCATGGCGACCGAAACT.....................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.........................A--TAT--AGAT--CCGACCATGG................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
............................................CATGGCGACCGAAACTACAAAAATGA...........................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
...............ATACC-----A--TAT--AGAT--CCGAC.....................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..............................................TGGCGACCGAAACTACAAAAA..............................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
...............ATACC-----A--TAT--AGAT--CCGACCATGGCGAC............................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
..............................................TGGCGACCGAAACTACAAAAATGGTT.........................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
..............................................TGGCGACCGAAACTACAAAAATAAG..........................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
..............................................TGGCGACCGAAACTACAAAAATGGTA.........................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
droSec2
AGTATC--------TATACC-----A--TAT--AGAT--CCAACCATGGCGACCGAAACTACAAAAATGGTAAGT------T--TGATTTTGAGACC----------GCGGTAATTACTTGTG--------------------ATTAGG--CA------GGTGATTAGTGATTAGTGGTTTGCAGCTA------------------GG-AATTTGG--GAACGTGGCGGTA-TTC-----C-GTC--TT--TTCC--GGTTAATTGCTTTT-CGTTGACCTTGAGAACCTG------------CCTTAATGC-CC-G-GCAAGCCCCTAGGACTT--TTTAT-------------GACGAAC----------------T-------GTTAAGATCCG--------------ACTGAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................AT--CCAACCATGGCGACCGA.........................................................................................................................................................................................................................................................................................................................................................................1921.0020020
...............ATACC-----A--TAT--AGAT--CCAACCAT..................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...............ATACC-----A--TAT--AGAT--CCAACCATGGCGACCG..........................................................................................................................................................................................................................................................................................................................................................................2911.0011000
..............................................................................................................................................................................GTGGTTTGCAGCTA------------------GG-AAT.............................................................................................................................................................................................................1911.0010010
...............ATACC-----A--TAT--AGAT--CCAACCATGGC...............................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.........................A--TAT--AGAT--CCAACCATGGCGACC...........................................................................................................................................................................................................................................................................................................................................................................2311.0010010
..................................GAT--CCAACCATGGCGACCGA.........................................................................................................................................................................................................................................................................................................................................................................2020.5010100
..............................................TGGCGACCGAAACTACAAAAATGAG..........................................................................................................................................................................................................................................................................................................................................................2520.5010010
dm3
AGTATC--------TATACC-----A--TAT--AGATCCCCAACCATGGCGACCGAAACTACAAAAATGGTAAGT------T--TGATTTTGAGAAA----------GCGGTAATTACTTGTG--------------------ATTAGG--CA------GGTGATTAGTGATAAGTGGTTTGCAGCTA------------------GA-AATTTGG--GAACGTGGCGGCA-TTT-----C-GTC--TT--TTCC--GGTTAATTGCTTTT-CGTTGACCTTGAGAACCTG------------CCTTAATGC-CC-G-GCAAGCCCCTAGGACTT--TT-------------CGCGACGAAC----------------T-------GTTAAGATCCG--------------ACTGAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................CATGGCGACCGAAACTACAAAAATGA...........................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AC----------------T-------GTTAAGATCCG--------------ACTGA.1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GACCGAAACTACAAAAATG............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TCC--GGTTAATTGCTTTT-CGT..............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................ATCCCCAACCATGGCGACCGAA........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................G--------------------ATTAGG--CA------GGTGATTAG.........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TTTT-CGTTGACCTTGAGAACCTG------------C.................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TAGGACTT--TT-------------CGCGACGAAC----------------T-------GT.............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GACCGAAACTACAAAAAT.............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................CTACAAAAATGGTAAGT------T--TGATTTTGA....................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TTGAGAAA----------GCGGTAATTACTTA........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................GATAAGTGGTTTGCAGCTA------------------GA-AATT............................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CCATGGCGACCGAAACTACAAAAATG............................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CCCCAACCATGGCGACCGAAACTACAAAAA..............................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TT-----C-GTC--TT--TTCC--GGTTAATTG.......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................................................................................................................................................................................................................................................................................................................................................T-------------CGCGACGAAC----------------T-------GTTAAGATCCG--------------ACT...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GATCCCCAACCATGGCGAC............................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................ATCCCCAACCATGGCGAC............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................A--TAT--AGATCCCCAACCATGGCGACC...........................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AT--AGATCCCCAACCATGGCGA.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droEre2
ACTATC--------TATACC-----A--TAT--AGATCCCCAACCATGGCGACCGAAACTACAAAAATGGTAAGT------T--CGATTTTAAGTCC----------GTGGTAATTATATATGTATAATATATAATAGGTGTTGTTAGG--CTTTCACTTGTGACTA-------GTGGCTTGCAGGTG------------------GG-AATTTGG--GAACGTGGCAGTG-TTC-----TTCGTG-TT--TTTC--GGTTAATTGCTTTT-CGTTGACCTTG--AACTCG---------CCGCCTTAATGC-CC-G-GCAAGCCCCTAGTACTT--TTGACGGCTTT---TCGTAACGAAC----------------C-------TTTGAGATCCG--------------ATTGAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................AT--AGATCCCCAACCATGGC...............................................................................................................................................................................................................................................................................................................................................................................1912.0020200000
ACTATC--------TATACC-----A--TAT--AGATC...........................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.....C--------TATACC-----A--TAT--AGATCCCCAACCAT..................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
droYak3
ACTATC--------TATACC-----A--TAT--AGAT-CCCAATCATGGCGACCGAAACCACAAAAATGGTAAGT------T--CGATTTTGAGTCCG----T--CGTTGGTAATTGCTTGTG--------------------ATTAGG--CTTTCACTTGTGACTA--------TGG----------------------------CT-ATATGGG--GAACGTGGCAGTG-TTC-----CTTGTG-TT--TGTC--GGTTAATTGCTTTT-CGTTGACCTTG--AACCCG---------TCGCCTTAATGC-CC-G-GCAAGCCCCTAGCACTT--TTGACGGCTTT---TCGAAACGAAC----------------T-------GTTGAGATCCG--------------ATTGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................ATATGGG--GAACGTGGCAGTG-TT.......................................................................................................................................................................................2211.00100000010000
.............................AT--AGAT-CCCAATCATGGCGACCGAAACC.....................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
................TACC-----A--TAT--AGAT-CCCAATCATGGC...............................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.........................A--TAT--AGAT-CCCAATCATGGC...............................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.........................A--TAT--AGAT-CCCAATCATGGCGAC............................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...............ATACC-----A--TAT--AGAT-CCCAATCATGGC...............................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..................................GAT-CCCAATCATGGCGACCGA.........................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...................................................................................................................................................................................................................................AGTG-TTC-----CTTGTG-TT--TGTC--GGTTA...........................................................................................................................................................2411.00100010000000
...................................................................................................................................................................................................................ATGGG--GAACGTGGCATC...........................................................................................................................................................................................17180.06100000100000
droEug1
AC------------TATATA-----G--TAT--AGAT---CCATCATGGCTACCGAAACAACGAAAATGGTAAGT------T--TGATTTAGAGC-T----------AAAGTAATTACTTGTG--------------------ATT--------------------AG-------T-ATTTCCTGCCG------AGGGAATTTTGGGG-ATTTTGG--GAACGTGGCAACA-TTT-----C-CAC--AC--TTTC--GGTTAATTGCTTTT-CTTTGACCTTG--AACCTG------------CTTAAATGC-CG-G-GCAAACCTCTCAGGCTT--TTAACGGCTTT---TCGTAACGAAC----------------A-------TTTAAGATTCGAATCGGATCACCCGCTAG-ASizeHit CountTotal NormTotal
No Reads
droBia1
TC------------CATATA-----G--TAT--AGAT---CAGCCATGGCGACCGAGACCACGAAAATGGTGAGT------T--CGATTTC-TGTTC----------ATGCTAATTACCCGTG--------------------ATTAGG--GA-------GTGATTAG-------T-GCTTCCTGCTG------------------GA-ACTCTGG--GAACGTGGCGAGG-TTT-----C-CA----C--CACC--GGTTAATTGTTTTT-CGATGACCTTG--AACCTG------------C-CTAATGC-CC-G-GCAAGCC-CTAGGACTT--TT-GCGGCTTT---CCGCA---------------------------------GAGATCCG--------------AGAGAASizeHit CountTotal NormTotal
No Reads
droTak1
TC------------TATATT-----A--TAA--AGAT---CAGCTATGGCGACCGAAACTACGAAAATGGTGAGT------T--TGATTTCTAGTTC----------ATGGTAATTACCTGTG--------------------ATTAGA--GA------AGTGATTAG-------T-ATTTCCTGTTG------------------GA-ACTTTGG--GAACGTGGAAAAA-TTT-----T-CAC--AT--TTTC--GGTTAATTGTTTTT-CGTTGACCTTG--AACCTG-----------CCTTTAATGC-CC-G-GCAAGCCCCTAAGACTT--TTAACGGCTTT---TCGTAGCGAAC----------------T-------GTTGAGATCCG--------------ATAG-ASizeHit CountTotal NormTotal
No Reads
droEle1
ACTATA--------TATA-------A--AAT--AGAT---CAACCATGGCGACTGAAACTACAAAAATGGTGAGT------T--TGATATTCAGTTT----------ATGGTAATTACTTGTG--------------------ATTAGGAAAA------GGTGATTAG-------C-ATTTCCTGCTG------------------GG-ACTTTGG--GAACGTGGCAC-ATTTT-----CTCAT--AT--ATTC--GGTTAATTGTTTTT-CGCTGACCTTG--AACCTG-----------GTTTTAATGCGCC-G-ACAAGCCCCTAGGACTT--TTAACGGCTTT---TCGCACCGACC----------------T-------TTTACGATCCG--------------GTAGAASizeHit CountTotal NormTotal
No Reads
droRho1
AC------------TATATA-----A--TAT--AGAT---CAACCATGGCGACCGAAACAACGAAAATGGTAAGT------T--TGATTTTCAGTTC----------ATGGTAATTACTTGTG--------------------ATTAGA--GA------GGTGATTAG-------C-ATTTCCTGCTG------------------GG-ACTTTGG--GAACGTGGCAACC-TTT-----T-CAC--TT--ATTC--GGTTAATTGTTTTT-CGTTGACCTTG--AACCTG-----------GCCTTAATGC-CC-G-GCAAGCCCCTAGGACTTACTTAACGGCTTT---CCGTAACAAAC----------------T-------TTAACGATCCG--------------ATAG-ASizeHit CountTotal NormTotal
No Reads
droFic1
G-TATA--------TATA-------T--TAA--AGAT---CAACCATGGCTACCGAAACCACGAAAATGGTGAGT------T--TGATTTCGAGCTC----------CTGGTAATTACTCGTG--------------------ATTAGA--GA------GGTGATTAG-------C-ATTTCCTGCTG------------------CG-ACATTGG--GAACGTGGCAGCG-GTT-----T-CAC--AT--TTTG--GGTTAATGGTTTTT-CTTTGACCTTG--AACCGG------------CTTTAATGC-CC-G-CCAAGCCCCTAGGACTT--TTAACGGCTTT---TCATAACGACA----------------A-------ATTGCGATCTA--------------ATGG-ASizeHit CountTotal NormTotal
No Reads
droKik1
AC------------TACATA-----G--TAT--AGAA-TTGAGCCATGGCTACCGAAACCACAAAGATGGTAAGT------TTTTGATATC-AGATT----------TTGGTAATTACGTGTG--------------------ATTAGA--AA------GGTGATTAG-------C-ATTTCCCGTTA------------------GAGGTATTGAAAAAACGTGGCAAAG-TGC-GGTCT-G-C--TTTTTGTGAGGTTTAATTGTTTTCGTGTTGACCTTG--AACCTG------------GTTTAATGA-CA-GGCCAAGCCCCTAGGTATT--TTTAGGGGTTT---TGGT--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CACGAC--------TATTCC-----ACATAT--TGAT---CAGCCATGGCAACTGAAACAACGAAAATGGTAAGA------T--TGATTTTCATC-GAGAGGTCTATATGGTAATTACTTGTG--------------------ATTAGA--GA------GGTGATTAG-------T----------T----------------------AGATTGG--GAACATGGCCATA-TTTTTTTCC-CTCT-AT--TTTCGTGTTTAATTGCTTTT-CGTTGACCTTG--AACCAG------------GTGTAATGC-GTGGGACAAGCCCCTTGGCTTT--TT--CGGATTT---TCCTCAAAAACACA---AAAAAAAGTATAAAAGTTGTTACGACGCGA-------------ATAG-ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............ATTCC-----ACATAT--TGAT---CAGCCATGGCAACT...........................................................................................................................................................................................................................................................................................................................................................................2912.002200000
.............................................ATGGCAACTGAAACAACGAAAA..............................................................................................................................................................................................................................................................................................................................................................2211.001010000
................................................................................................................................................TTAGA--GA------GGTGATTAG-------T----------T----------------------AGATTGG--.......................................................................................................................................................................................................2511.001000010
..................CC-----ACATAT--TGAT---CAGCCATGGC...............................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...........................ATAT--TGAT---CAGCCATGGC...............................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..................CC-----ACATAT--TGAT---CAGCCAC..................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.............................AT--TGAT---CAGCCATGGCAACT...........................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............ATTCC-----ACATAT--TGAT---CAGCCATG.................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.............................AT--TGAT---CAGCCATGGCAACC...........................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...GAC--------TATTCC-----ACATAT--TGAT---CAGC.....................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..................CC-----ACATAT--TGAT---CAGCCATGGCAACT...........................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...............ATTCC-----ACATAT--TGAT---CAGCCATGGC...............................................................................................................................................................................................................................................................................................................................................................................2511.001010000
droBip1
AC------------CGAACC-----ACACAC--TGAT---CAGCCATGGCAACCGAAACAACGAAAATGGTAAGA------T--TCATTTTCTTC-GAGAGGTGTATATGGTAATTACTTGCG--------------------ATTAAA--AA------GGTGATTAG-------T-ATTTCCTGTGG------------------------------------------------------------------C--GTTCAATTGTTTTT-CGTTGACCTTG--AATCAG------------GTGTAATGC-GTGTGACAAGCCCCTTGG-CTT--TTTACAGATTT---TCCTAAAAAAAAAAACAAAAAAAAA-ATCTTAGTTTTTATGACGCG--------------ATAA-ASizeHit CountTotal NormTotal
No Reads
dp5
AGCATCGAAAGATATATACCATATAC--CATAATTAC---CAGCCATGGCAACCGAGACTACCAAAATGGTGAGTGCTGATT--CGATTTTGATTCGA----TTCCCATGTTAATTACTCGTG--------------------ATTAGA--AA------GGTGATTAG-------C-ATTTCCTGTTGATTTCTATTCAATTTCGAGA-ACTTCGA--GAACGTGGCAACA-TTG-----T-CTCGCTTTCC--G--TTTTACCTGC-------TTGACCTTG--AACCTGTGTTTGTTTCGGGCCTAATTC-GG-G-ACAGGCCCCTAGGACTT--TAAACGGCTTTTTTTCGAAATGAAC----------------TGTTGG--TTTATGGCCCG--------------ATAGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................TTCAATTTCGAGA-ACTTCGA--G......................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................TTTGTTTCGGGCCTAATTC-GG-G-ACA................................................................................................2511.0010100000000
..................................................................ATGGTGAGTGCTGATT--CG...........................................................................................................................................................................................................................................................................................................................................1811.0010000100000
droPer2
AGAATCGAAAGATATATACCATATAC--CATAATTAC---CAGCCATGGCAACCGAGACTACCAAAATGGTGAGTGCTGATT--CGATTTTGATTCGA----TTCCCATGTTAATTACTCGTG--------------------ATTAGA--AA------GGTGATTAG-------C-ATTTCCTGTTGATTTCTATTCAATTTCGAGA-ACTTCGA--GAACGTGGCAACA-TTG-----T-CTCGCTTTCC--G--TTTTACCTGC-------TTGACCTTG--AACCTGTGTTTGTTTCGGGCCTAATTC-GA-G-ACAGGCCCCTAGGACTT--TTAACGGCTTT-TTTCGAAATGAAC----------------TGTTGG--TTTATGGCCCG--------------ATAGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................TTTCC--G--TTTTACCTGC-------TTGAC..........................................................................................................................................2114.004400000
...........................................................................................................................................................................................................CGAGA-ACTTCGA--GAACGTGGC..............................................................................................................................................................................................2111.001001000
....................................................................................................................................................................................................................................................................................................................................CCCTAGGACTT--TTAACGGC........................................................................1911.001100000

Generated: 05/18/2015 at 04:00 PM