ID:

dsi_10925

 Coordinate:

2l:10514118-10514267 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.7 -14.5 -14.3 -14.1

Flybase annnotation

three_prime_UTR [2l_10513914_10515442_-]; exon [2l_10513914_10515596_-]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
AAACATCCGTGAAAAGGCATTCAACAAGTCATCAAATACGCACGGCATTTGTAAGCTCTTCCAATTTTAATTCGCTTTACTAAAGCAGATTGTATACAAAAATTTGGAGACTTCGGGGTACCACATAAGTAATTGGCTAAGAACCTGTAATCAGTGTTTTTTTTTATTAGAGGGAGTTTGACTAGAATCCTTACTACTATTTTAAACAGTAATTATATAAAAGGCTAGGATTATAGGCTAAGCTTAACTG
*****************************************************************************.........................(((((.((((((...............((((.....(((((((((....))).))))))....))))...))))))...))).))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M025
embryo
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 M053
female body
 O001
Testis
 GSM343915
embryo
.............................................................................TACTAAAGCAGATTGTATACAAAAATT.................................................................................................................................................. 27 0 1 9.00 9 1 2 0 4 0 1 0 1 0 0 0 0 0
.................................................................................................................................................................TGTTATTAGAAGGAGTTTTACTA.................................................................. 23 3 1 5.00 5 0 0 5 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTATATAAAAGGCTAGGATTATAGGC............ 26 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TTTTATTAGAGGGAGTTTGACTAGAA............................................................... 26 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TAATTGGCTAAGAACCTGTAATCAG................................................................................................ 25 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTTTTTATTAGAGGGAGTTTGACTAGAA............................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTCGGGGTACCACATAAGTAATTGGC................................................................................................................. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTTTTTTATTAGAGGGAGTTTGAC.................................................................... 24 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................TACCACATAAGTAATTGGCTAAGAACC......................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TACAAAAATTTGGAGACTTCGGGGT................................................................................................................................... 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TTTTTATTAGAGGGAGTTTGACTAGA................................................................ 26 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................TTTTTATTAGAGGGAGTTTGACTAGAA............................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TTATTAGAGGGAGTTTGACTAGAATC............................................................. 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
........................................................................CGCTTTACTAAAGCAGATTGTATACAAAA..................................................................................................................................................... 29 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTTTTTTATTAGAGGGAGTTTGACTAGAA............................................................... 29 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TAAACAGTAATTATATAAAAGGCTAGGA.................... 28 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................TTTTTTTATTAGAGGGAGTTTGACTAGA................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGACTAGAATCCTTACTACTATTTTAAA............................................ 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................TTAGAGGGAGTTTGACTAGAATCCT........................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTTTTTTTATTAGAGGGAGTTTGAC.................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................ACGCACGGCATTTGTAAGC.................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..................ATTCAACAAGTCATCAAATACGCACGGC............................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................GTAATCAGTGTTTTTTTTTATTAGAGG............................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................TACGCACGGCATTTGTAAGCT................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAAAGGCTAGGATTATA............... 17 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................TTTTATTAGAGGGAGTTTGACTAGA................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AATTATATAAAAGGCTAGGATT.................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................TTTTTTTTATTAGAGGGAGTTTGACTA.................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGGCTAGGATTATAGGCTAAGCTTAACT. 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAGGATTATAGGCTAAGCTT..... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................ACTAAAGCAGATTGTATACAAAAATTT................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTGGCTAAGAACCTGTAATCAGTGTT............................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................CCACATAAGTAATTGGCTAAGAACC......................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAAGTAATTGGCTAAGTA........................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTGTATACAAAAATTTGGAGACTTCG....................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................TAATTGGCTAAGAACCTGTAATCG................................................................................................. 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................AGGGAGTTTGACTAGAAT.............................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
AAACATCCGTGAAAAGGCATTCAACA................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................TTTGACTAGAATCCTTACTACT.................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....TCCGTGAAAAGGCATTCAACAAGTCATC......................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................CAAAAATTTGGAGACTTCGGGGTACCACA............................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGACTAGAATCCTAACTACTATTTT............................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TACTAAAGCAGATTGTATACAAAAA.................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....TCCGTGAAAAGGCATTCAACAAGTCA........................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGATTATAGGCTAAGCT...... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................ATCAGTGTTTTTTTTTATTAGAGG............................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................TATAAAAGGCTAGGATTATAGGCTAAGC....... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTTATTAGAGGGAGTTTGACTAGAA............................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCAGTGTTTTTTTTTATTAGAGGGA........................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TTGTATTAGAGGGAGTTTGACTAGAA............................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TTTGGAGACTTCGGGGTACCACATAT.......................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................CGCTTTACTAAAGCAGATTGTATACA........................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TGTATACAAAAATTTGGAGACTTCGGGG.................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TACTAAAGCAGATTGTATACAAAAAT................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AAAAATTTGGAGACTTCGGG..................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................TGTTTTTTTTTATTAGAGGGAGTT........................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AGATTGTATACAAAAATTTGGAGACT.......................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................AATACAAAAATTTGGAGACTTCGGGGT................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TATATAAAAGGCTAGGATTATAGGC............ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTTTATTTTATTAGAGG............................................................................. 17 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CATTTATTAGATAAAAGGCT........................ 20 3 20 0.25 5 0 0 0 0 0 0 0 0 5 0 0 0 0
..........................................................................................................................................................TATTTTATTTTATTAGAGG............................................................................. 19 2 15 0.20 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTTATTTTATTAGAGG............................................................................. 16 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAGACTTCGGGGT................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................TTTTTTATTTTTATTAGAGGGA........................................................................... 22 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................TTTAATGCGCTTTACCAA....................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................ACGGCTAGGATTTTACGCT........... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AGTTAATGGGTAAGAACCT........................................................................................................ 19 3 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TTATTAGATAAAAGGCT........................ 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTTGTAGGCACTTTTCCGTAAGTTGTTCAGTAGTTTATGCGTGCCGTAAACATTCGAGAAGGTTAAAATTAAGCGAAATGATTTCGTCTAACATATGTTTTTAAACCTCTGAAGCCCCATGGTGTATTCATTAACCGATTCTTGGACATTAGTCACAAAAAAAAATAATCTCCCTCAAACTGATCTTAGGAATGATGATAAAATTTGTCATTAATATATTTTCCGATCCTAATATCCGATTCGAATTGAC
***************************************************************.........................(((((.((((((...............((((.....(((((((((....))).))))))....))))...))))))...))).))***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
......GGCACTTTTGCGTGAGTTG................................................................................................................................................................................................................................. 19 2 4 3.25 13 13 0 0 0 0 0 0
...........................................CCGTAAACTTTTGAGAAGGCTA......................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0
....TAGGCAGTCTTCGGTAAGTTG................................................................................................................................................................................................................................. 21 3 2 0.50 1 0 1 0 0 0 0 0
..........................................................................................................................................................................TCCGTCAGACTGATCTCAGG............................................................ 20 3 3 0.33 1 0 0 0 1 0 0 0
.................................................ACATTCGAGAGGGTTG......................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1
..........................................................................................................................................................................TCCCTCAAAGTGTTCTAA.............................................................. 18 3 20 0.05 1 0 0 0 0 1 0 0
............................................................................................................................................................AAAAAAAAATTGTCTCCC............................................................................ 18 2 20 0.05 1 0 0 0 0 1 0 0
......................................................................................................AAACCTCTGCGGCCCC.................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0
.................................................................................................................GGCGCATGGTGTATTC......................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:10514068-10514317 - dsi_10925 AAA-CATCCGTGA------------AAA-------------------GGCATTC-----------AACA-------------------AGTCATCAAATA--CGCACG--GCA-TTTGTAAGCTCTTCCAATTTTAATTCGCTTTACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----TTTGGAGACTTCG---GGGTAC---------------CACATAAGTAATTGGC--TA-AGAA-CCTG------------------TAATCAGTGTT---TTT--------TTT-----T-ATTA--GAG--------------------GGAGTTTGACT----------AGAATCCTTACTA--CT--ATT-----T--TA---AACAGTAATTATATAAAAGGCTAGGATTA---------------------------TAGGC-TAAGCTTAACTG
droSec2 scaffold_3:6256034-6256282 - AAA-CATCCGTGA------------AAA-------------------GGCATTC-----------AACA-------------------AGTCATCAAATA--CGCACG--GCA-TTTGTAAGCTCTTCCAATTTTAATTCGCTTTACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----TTTGGAGACTCCG---GGGTAC---------------CACATAAGTAATTGGC--TA-AGAA-CCTG------------------TAATCAGTGTT---TTT---------TT-----T-ATTA--GAG--------------------GGAGTTTGACT----------AGAATCCTAACTA--CT--ATT-----T--TA---AACAGTAATTATATAAAAGGCTAGGATTA---------------------------TAGGC-TAAGCTTAACTG
dm3 chr2L:10837886-10838153 - AAA-CATCCGTGA--------------A-------------------GGCATTC-----------AACA-------------------AGTCATCAAATA--TGCACG--ACA-TTTGTAAGCTCTTCCAATTTTAATTCGCTTTACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----GTTGGACACTTCG---GGGTAC---------------CACATAAGTAATTGGC--TA-AGAA-TCTG------------------TAATCAGTGTT---TTTTTTTTTATTTT-----T-ATTA--GAG--------------------GGAGTGTGATT----------AGAATCCTAACTA--TT--ATA-----T--TA---AACAGTAATTATATAAAAGGCTAGGATTAT-AGGT--------------ATATTTTTAGGC-TAAGCTTAACTG
droEre2 scaffold_4929:14592305-14592567 + AAA-CATCCGTGA------------AAA-------------------GGCATTC-----------AACA-------------------AGTCATCAAATA--TGCGCG--GCA-TTTGTAAGCTCTTCCAATTTTAATTCGCCTTACTAAA------GCAG--------ATTGTATGAAA---------------------------------------AA----TTTGGAGTCTTCG---GGGTAC---------------CACATAAGTAATTGGC--TA-AGAT-ACTG------------------TACTCAGTGTT---TTTAC------TTT-----T-ATTA--GAG--------------------GGAGTTTGACA----------AGAATCCTAACTA--CT--ACA-----G--TA---AACAGTAATTATACAAAAGACTAGGCTTAT-AGGT--------------ATATTTTTAGGC-TAAGCTTAACTG
droYak3 2L:7245556-7245814 - AAA-CATCTGTGA------------AAA-------------------GGCATTC-----------AACA-------------------AGTCATCAAATA--TGCGCG--GCA-TTTGTAAGCTCTTCCAATTTTAATTCGCCTTACTAAA------GCAG--------ATTGTATAAAA---------------------------------------AA----TTTGCAGTCTTCG---GGGTAC---------------CACATAAGAAATTGGC--TA-AGAT-CCTG------------------TACTCAGTGTT---TTTTT------CTT-----T-ATTA--GAG--------------------GGAGTTTGACA----------AGAATCCTAACTA--CT--ATA-----T--T-------AGTAATTATACAAAAGACTAGGTTTAT-AGGT--------------ATATTTCTAGGC-TAAGCTTAACTG
droEug1 scf7180000409554:3855770-3856019 - CGT-CATCCGTGC------------GAA-------------------CGCAAAC-----------AAAA-------------------AGTCATCAAATA--TTCGCG--ACA-TTTGTAAGCTCTTCCAATTTTAATTCGTCTTACTAA-------GCAA--------ACTGTATAAA----------------------------------------------------GTCT-CT---GGGTAG---------------TACATAAGCAATTGGA--TA-CAAAACCTT------------------TATTCAGTGGT---TTT---------TT-----T-AGTA--GAGAGAG----------------AGAGTTTGACG----------AAAAACACAACTCTTCTATATA-----T--TA---TACAGTAACT-----ATAGGCTAGGATTAT-AGGT--------------AT---CTTAGGT-TAAGGTTAACTG
droBia1 scf7180000302422:2279067-2279321 + AAT-CATCGGTGA------------AAT-------------------GGCAGTC-----------AA-A-------------------AGTCATCAAATA--TTCTCG--ACA-TTTGTAAGCTCTTCCAATTTTAATTCGTCTTACTAAA------AATG--------ATTGTATACAA----------------------------------------A----TTTTGAGTATATG---GGGTAG---------------CACATAAGCAATTGGT--CA-TAAT-CCTA------------------TGTTCAGTGGA---TAC--------TTT-----T-TTAA--GGG--------------------GGAGTTTCACA----------AGAAACCTAACTCTTCT--TTA-----T--TA---TACAGTAATTATACAATAGACTAGGATTGT-AGGT--------------A------TAGGC-TAAGTTTACCTG
droTak1 scf7180000415385:305380-305636 - AAT-CATCGGTGA------------AAT-------------------GGCAGTG-----------AAAA-------------------AGTCATCAAATA--TTCGCG--ACA-TTTGTAAGCTCTTCCAATTTTAATTCGTCTCACTAAA------GAAA--------ATTGTATACAA----------------------------------------A----TTTTGAGTCTATG---GGGTAG---------------CACTTAAGCAATTGGC--AA-AGAT-CCTA------------------TATTCAGTGGA---TAA--------TTT---T-A-TATA--GGG--------------------GGAGTTTGACA----------AGAAACATAACTCTTCT--ATA-----T--TA---TACAGTAATTATACAATAGACTAGGATTTT-AGGT--------------A------TAGGC-TAAGTTTACCTG
droEle1 scf7180000490971:16552-16813 + TAT-CATCCGTCA------------AAA-------------------GGAAGTC-----------AAAA-------------------AGTCCTCA-ATA--TGCTCG--ACA-TTTGTAAGCTCTTCCAATTTTAAATCGTCTTACTAAA------GCAA--------ATTGTATACAA----------------------------------------A----TTTTGAGTACATG---TGGTAG---------------CGCATAAGCAATTGGC--TA-AGAT-CCTG------------------TATTCAGTGCT---TTTTA------TTT-----T---TT--GATGG------------------AGAGAGCGACA----------AC-----TTTCTCTTCA--AAACCATATAGTTAATTACAGTAAT-------TAGACTAGGACTTTAAGGT--------------ATATTCTTAGGC-TAAGCTTACCTG
droRho1 scf7180000780178:22761-23020 - AAT-CATCCGTCA------------AAA-------------------GGGAGT------------AAAA-------------------AGTCGTCAGATA--TTCTCG--ACA-TTTGTAAGCTCTTCCAATTTTAAATCGTCTTACTAAA------GGAA--------ATTGTATACAG----------------------------------------A----TTTTGATTATATG---GGGTAG---------------TACATAAGTAATTGGC--TA-AGAT-CCTG------------------TATTCAGTGCT---TTT----------T---T-A-A-AT--GAG--------------------GGAGT--AAAA----------AGAAAC-TATATATTCTA-ATATTATATAGTTAATTGCAGT-------AAATAGACTAGGATTAT-AGGT--------------ATCTGCTTAGGC-TAAGTTTACCTG
droFic1 scf7180000454111:285421-285679 - TCTTCAACCATCA------------AGA-------------------GGAAGTC-----------AAAA-------------------AGTCAACAAAAA--TTCGCG--ACA-TTTGTAAGCTCTTCCAATTTTAATTCGTCTTACTAAA------GCAA--------ATTGTACACAA----------------------------------------A----TT---------TG---GGGTAG---------------CACATAAGAAATTGGC--TA-AGAT-CATA------------------TGATAAGTGGTGTTTTTTT------TTT-----A-AATA--GAG--------------------GGAGTTTGACA----------AGAAATCTAACTCTTTT--ATA-----T--AA---ATCCTTAATTATACAATATGTTAGGACTGT-AGGT--------------ATCTTCTTAGAC-TAAGATTAACTG
droKik1 scf7180000302472:2468532-2468824 + ATC-CATCCGATC------------AGC------------CAAAAAAGGAAGCC---GAG-----AAAT-------------------CCCCGTCAGACTTGTGTGCG--ACA-TTTGTAAGCTCTTCCAATTTTAACTTGTC--ACTAAATAAGCAACAA--------GCTGTATACAA----------------------------------------A----ATTTAAGTCGTCG---GGATTT---------------ACCATTAGCAATTGGCGCTA-AGAT-CCTG------------------AATTCTCTATA---TAT--------TTTTTTT-TAATTA--GAGAGAGAGAGAAAGAGAAAGAGGAAGTTTGACC----------AGAAACTAAACTCTTCT--TTA-----C--TA----------TGTATACTAGAAATTAGG------AGGT--------------ATCTTCCTAGGC-TAAGTTTAATTG
droAna3 scaffold_12916:14693139-14693380 - ATC-CATCCGCCA------------GTT-------------------GGAGGTC---ACAAGATCAACA-------------------GTTCATCGGGCT--TAACCG--ACACTTTGTAAGCTCTTCCAATTTTAATTCGTGTTACTAAA-----AGCGA--------ACTGTG----A----------------------------------------A----ATTCGATTGATTT---GGGTAT---------------TTAATAAGCGATTGGC--GGAAGTT-ACTC------------------TATTTAGGGGT---TTT-------------------------------------------------------------------------CAGAACTGTTCG--TAA-----T--TA---TATCCTAGCTGTAATATATTTTAGAATTAG-TGAT--------------CTATTCGTAAGC-TAAGTTTAATTG
droBip1 scf7180000396572:2292689-2292970 + ATC-CAGCCACCAGCTGCGTCA---TAT-------------------GGAGCTCAAGACAAGATCAGCA-------------------GTTCATCGGGCT--TAACCG--ACACTTTGTAAGCTCTTCCAATTTTAAATCGTGTTACTAAA------TCGA--------ACTCTAAAAAA--------------------------------------TGT----ATTCGATTGATTT---GGGTAT---------------TTTATAAGCGATTGGC--GGAAGTT-ATTGTATTG----------------TTTGGGGT---TT----------TC-----A-AACA--GCA--------------------ACAGTTTTCCGACACGAATTGGGAATCGGAACTGTTCG--TAA-----T--TA---TATCCTAGTTGTAATATATTTTAGAA-----------------------------TTAAGT-TAAGGTTAATTG
dp5 4_group4:3042902-3043125 - ATC-CATCCATTC------------AAG-------------------GGAA--------------------------------------GCCAGCAAGTT--TGCGCG--CCA-TTTGTAAGCTCTTCCAATTTTAATTCGTGTCATTAAG------------------------------------------------------------------------------------------TGGGTC---------------CCCGTTATGAATTGGC--TA-AGAT-TATT------------------GAACAAAACCA---TTT--------C-----T-AGACTG--GGG--------------------AAAAGTTGAAG----------GAAAAT------A--CT--ACACCATGTAGTA---------AATTGTACAATAGAATAGTATTAG-TGGT--------AATGCTATCTTTTTAAGC-TAAGTTTACCTG
droPer2 scaffold_10:2057748-2057971 - ATC-CATCCATTC------------AAG-------------------GGAA--------------------------------------GCCAGCAAGTT--TGCGCG--CCA-TTTGTAAGCTCTTCCAATTTTAATTCGTGTCATTAAG------------------------------------------------------------------------------------------TGGGTC---------------CCCGTTATGAATTGGC--TA-AGAT-TATT------------------GAACAAAACCA---TTT--------C-----T-AGACTG--GGG--------------------AAAAGTTGAAG----------GAAAAT------A--CT--ACACCATGTAGTA---------AATTGTACAATAGACTAGTATTAG-TGGT--------AATGCTATCTTTTTAAGC-TAAGTTTACCTG
droWil2 scf2_1100000004516:3534255-3534278 + ------------------------------------------------------------------------------------------------------------------TTTGTAAGCTCTTCCAATTTTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:15776604-15776905 + AC---ATCGACG----------------------------------------TC-----------AG-C-------------------AATAATCGCAAC--TGCTCG--GGA-CTTGTAAGCTCTTCCAATTTTAAACTGTCAAACAAAA------GCAA--------AAAAAAAAAA----GTTAAATATA-------ATATGTATGTTAAGTGAGATT----ATTGAAGATTCCAAATGGATATCGCAAATTTATGAATAGCAATAACAATTGGC--TA-TATT-AGTT------------AATTTGTGTTCAGTG--------------------------------GGG--------------------GGC-C--ATCT----------AGGGTA-TATATATATAT-ATTATATATATTTATTCACATA-------GATTAGGTTAGTTTTAA---GCACAACTTTTTTGTTGTTCATTTATGC-TAAGGTTAATTG
droMoj3 scaffold_6500:18773514-18773823 + ACA-CGGCGGAGA------------GCTAAGCCTATCACCACGT---CGAGCCT-----------CAGT-------------------AGTCATCGCAGC--TGTTCGGGACT-TTTGTAAGCTCTTCCAATTTTAATCTGTTC-ATAAAA------GAAGAAAATAGAAAAGAAAAAA----GAAAAATATATATATATTAAAATATGTTACGTGAGAA---------------T-----GGATATATCAAATTTATAAATGGC--AATTAATTGG------------CTA------------------TATTAGATGAT---TTG---------TT---TAT-GTCT--GGG--------------------GGCATGTATA------------GGGTA-T--------------------ATTTATTCATATA-------GTTTAGGCTAGTTTTAA---GCACAACTTTTTTGTTGTTCACTTATGC-TAAGGTTAATTG
droGri2 scaffold_15126:2071009-2071346 - CAG-CAACAACAAGAAAAATCATCCGGC-------------------GGAGTGT---GCAGCATCGACAGTCTTCACGTTAACATTGCAGCCATCA---C--TGTTTG--GGA-CTTGTAAGCACTTCCAATTTTAATCTGTCGCAAGAAA------AAGT--------ACTACACC--ATTAAAAAA----ATGTCTTTTTAAGTATGTAAAATGAGATTCCAGAATTGAATAAC--------------AAGTTTATT---CAATAAAATAATTAAA--CA-AGCT-ATTA--TAGTCAGGTA------TATTCAATAAT---TTG------------------CTTAGCGAG--------------------GG--CATGTA------------GGGTA-T--------------------ATTTATCCATTTA-------GGTTAGGCTAATTTTAA---GCACAACTTTTTTGTTGTTTACTTAAGCTTAAGGTTAATTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAA-CATCCGTGA------------AAA-------------------GGCATTC-----------AACA-------------------AGTCATCAAATA--CGCACG--GCA-TTTGTAAGCTCTTCCAATTTTAATTCGCTTTACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----TTTGGAGACTTCG---GGGTAC---------------CACATAAGTAATTGGC--TA-AGAA-CCTG------------------TAATCAGTGTT---TTT--------TTT-----T-ATTA--GAG--------------------GGAGTTTGACT----------AGAATCCTTACTA--CT--ATT-----T--TA---AACAGTAATTATATAAAAGGCTAGGATTA---------------------------TAGGC-TAAGCTTAACTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................TACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----TT.....................................................................................................................................................................................................................................................................................2719.00900000021001014000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATAAAAGGCTAGGATTA---------------------------TAGGC-............2613.00300000021000000000
...............................................................................................................................................................................................................................................................................................................................................TTT-----T-ATTA--GAG--------------------GGAGTTTGACT----------AGAA.........................................................................................................2613.00300000012000000000
..............................................................................................................................................................................................................................................................................TAATTGGC--TA-AGAA-CCTG------------------TAATCAG...........................................................................................................................................................................................2513.00300300000000000000
.....................................................................................................................................................................................................................................................................................................................................TT--------TTT-----T-ATTA--GAG--------------------GGAGTTTGACT----------AGAA.........................................................................................................2812.00200000002000000000
..........................................................................................................................................................................................................................................TTCG---GGGTAC---------------CACATAAGTAATTGGC--................................................................................................................................................................................................................................2612.00200000020000000000
....................................................................................................................................................................................................................................................................................................................................TTT--------TTT-----T-ATTA--GAG--------------------GGAGTTTGAC........................................................................................................................2412.00200000000100010000
....................................................................................................................................................................................................................................................TAC---------------CACATAAGTAATTGGC--TA-AGAA-CC......................................................................................................................................................................................................................2712.00200000020000000000
...............................................................................................................................................................................TACAA--------------------------------------AAA----TTTGGAGACTTCG---GGGT...................................................................................................................................................................................................................................................................2512.00200000001100000000
......................................................................................................................................................................................................................................................................................................................................T--------TTT-----T-ATTA--GAG--------------------GGAGTTTGACT----------AGA..........................................................................................................2612.00200000001010000000
......................................................................................................................................................................................................................................................................................................................................T--------TTT-----T-ATTA--GAG--------------------GGAGTTTGACT----------AGAA.........................................................................................................2712.00200000011000000000
.................................................................................................................................................................................................................................................................................................................................................T-----T-ATTA--GAG--------------------GGAGTTTGACT----------AGAATC.......................................................................................................2612.00200000000200000000
...........................................................................................................................................CGCTTTACTAAA------GCAG--------ATTGTATACAA--------------------------------------AA............................................................................................................................................................................................................................................................................................2912.00200000020000000000
....................................................................................................................................................................................................................................................................................................................................TTT--------TTT-----T-ATTA--GAG--------------------GGAGTTTGACT----------AGAA.........................................................................................................2912.00200000000200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TA---AACAGTAATTATATAAAAGGCTAGGA................................................2812.00200000010010000000
....................................................................................................................................................................................................................................................................................................................................TTT--------TTT-----T-ATTA--GAG--------------------GGAGTTTGACT----------AGA..........................................................................................................2811.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................TGACT----------AGAATCCTTACTA--CT--ATT-----T--TA---AA........................................................................2811.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................TTA--GAG--------------------GGAGTTTGACT----------AGAATCCT.....................................................................................................2511.00100000001000000000
................................................................................................................................................................................................................................................................................................................................T---TTT--------TTT-----T-ATTA--GAG--------------------GGAGTTTGAC........................................................................................................................2511.00100000000000010000
...................................................................................................A--CGCACG--GCA-TTTGTAAGC.............................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
..................................................ATTC-----------AACA-------------------AGTCATCAAATA--CGCACG--GC........................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
...................................................................................................................................................................................................................................................................................................G------------------TAATCAGTGTT---TTT--------TTT-----T-ATTA--GAG--------------------G.................................................................................................................................2711.00100010000000000000
..................................................................................................TA--CGCACG--GCA-TTTGTAAGCT............................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGCTAGGATTA---------------------------TA................1711.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................TTT-----T-ATTA--GAG--------------------GGAGTTTGACT----------AGA..........................................................................................................2511.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTATATAAAAGGCTAGGATT..............................................2211.00101000000000000000
................................................................................................................................................................................................................................................................................................................................T---TTT--------TTT-----T-ATTA--GAG--------------------GGAGTTTGACT----------A............................................................................................................2711.00100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTAGGATTA---------------------------TAGGC-TAAGCTTAACT.2811.00100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGATTA---------------------------TAGGC-TAAGCTT.....2011.00110000000000000000
.................................................................................................................................................ACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----TTT....................................................................................................................................................................................................................................................................................2711.00100000000000001000
.................................................................................................................................................................................................................................................................................TTGGC--TA-AGAA-CCTG------------------TAATCAGTGTT---....................................................................................................................................................................................2611.00100100000000000000
......................................................................................................................................................................................................................................................C---------------CACATAAGTAATTGGC--TA-AGAA-CC......................................................................................................................................................................................................................2511.00100000000100000000
..........................................................................................................................................................................TTGTATACAA--------------------------------------AAA----TTTGGAGACTTCG---.......................................................................................................................................................................................................................................................................2611.00100000000001000000
..............................................................................................................................................................................................................................................................................TAATTGGC--TA-AGAA-CCTG------------------TAATCG............................................................................................................................................................................................2411.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................AG--------------------GGAGTTTGACT----------AGAAT........................................................................................................1811.00100001000000000000
AAA-CATCCGTGA------------AAA-------------------GGCATTC-----------AACA-------------------................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................TTTGACT----------AGAATCCTTACTA--CT--..........................................................................................2211.00100100000000000000
......TCCGTGA------------AAA-------------------GGCATTC-----------AACA-------------------AGTCATC.........................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
.................................................................................................................................................................................CAA--------------------------------------AAA----TTTGGAGACTTCG---GGGTAC---------------CACA..............................................................................................................................................................................................................................................2911.00100000001000000000
................................................................................................................................................TACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----.......................................................................................................................................................................................................................................................................................2511.00100000000000010000
......TCCGTGA------------AAA-------------------GGCATTC-----------AACA-------------------AGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATTA---------------------------TAGGC-TAAGCT......1811.00110000000000000000
........................................................................................................................................................................................................................................................................................................................ATCAGTGTT---TTT--------TTT-----T-ATTA--GAG--------------------G.................................................................................................................................2411.00100000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAAGGCTAGGATTA---------------------------TAGGC-TAAGC.......2811.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................TT-----T-ATTA--GAG--------------------GGAGTTTGACT----------AGAA.........................................................................................................2511.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................TCAGTGTT---TTT--------TTT-----T-ATTA--GAG--------------------GGA...............................................................................................................................2511.00100000001000000000
.................................................................................................................................................................................................................................TTTGGAGACTTCG---GGGTAC---------------CACATAT...........................................................................................................................................................................................................................................2611.00100000000000010000
...........................................................................................................................................CGCTTTACTAAA------GCAG--------ATTGTATACA.....................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...........................................................................................................................................................................TGTATACAA--------------------------------------AAA----TTTGGAGACTTCG---GGG....................................................................................................................................................................................................................................................................2811.00100000000000001000
................................................................................................................................................TACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----T......................................................................................................................................................................................................................................................................................2611.00100000010000000000
..................................................................................................................................................................................AA--------------------------------------AAA----TTTGGAGACTTCG---GG.....................................................................................................................................................................................................................................................................2011.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................TGTT---TTT--------TTT-----T-ATTA--GAG--------------------GGAGTT............................................................................................................................2411.00100000001000000000
...............................................................................................................................................................AG--------ATTGTATACAA--------------------------------------AAA----TTTGGAGACT.............................................................................................................................................................................................................................................................................2611.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAAAAGGCTAGGATTA---------------------------TAGGC-............2511.00100000000100000000
droSec2
AAA-CATCCGTGA------------AAA-------------------GGCATTC-----------AACA-------------------AGTCATCAAATA--CGCACG--GCA-TTTGTAAGCTCTTCCAATTTTAATTCGCTTTACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----TTTGGAGACTCCG---GGGTAC---------------CACATAAGTAATTGGC--TA-AGAA-CCTG------------------TAATCAGTGTT---TTT---------TT-----T-ATTA--GAG--------------------GGAGTTTGACT----------AGAATCCTAACTA--CT--ATT-----T--TA---AACAGTAATTATATAAAAGGCTAGGATTA---------------------------TAGGC-TAAGCTTAACTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................CTTCCAATTTTAATTCGCTTTA......................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..A-CATCCGTGA------------AAA-------------------GGCATTC-----------AACA-------------------AG..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
................................................................................................................A-TTTGTAAGCTCTTCCAAT....................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
dm3
AAA-CATCCGTGA--------------A-------------------GGCATTC-----------AACA-------------------AGTCATCAAATA--TGCACG--ACA-TTTGTAAGCTCTTCCAATTTTAATTCGCTTTACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----GTTGGACACTTCG---GGGTAC---------------CACATAAGTAATTGGC--TA-AGAA-TCTG------------------TAATCAGTGTT---TTTTTTTTTATTTT-----T-ATTA--GAG--------------------GGAGTGTGATT----------AGAATCCTAACTA--TT--ATA-----T--TA---AACAGTAATTATATAAAAGGCTAGGATTAT-AGGT--------------ATATTTTTAGGC-TAAGCTTAACTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAAAAGGCTAGGATTAT-AGGT--------------A........................26135.003500000000000000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000003012100000
..........................................................................................................................................................................................................................................................................TAAGTAATTGGC--TA-AGAA-TCTG------------------TAATC.............................................................................................................................................................................................27133.00330000000000000000000000000000000000001000000000000000000000000000000000000000041000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001020501000000000000020000010000000000000000000000000000000000000000000000000000000000000000000000040000001000000000000000000900000
.......................................................................................................................................................................................................................................................................................................................................................T-ATTA--GAG--------------------GGAGTGTGATT----------AGAATCC......................................................................................................26130.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011201000100000000000000001000000000000000000000000000000000000000000000000000010400001000000000000000000111500000
.................................................................................................................................................................................................................................................................................................................................................T-----T-ATTA--GAG--------------------GGAGTGTGATT----------AGAATCC......................................................................................................27128.002800000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000002600000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAAGGCTAGGATTAT-AGGT--------------A........................24125.002500000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011900000
.................................................................................................................................................................................................................................................................................TTGGC--TA-AGAA-TCTG------------------TAATCAGTGTT---....................................................................................................................................................................................26124.002400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004142000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATAAAAGGCTAGGATTAT-AGGT--------------A........................27122.002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000022001500000
..........................................................................................................................................................................................................................................TTCG---GGGTAC---------------CACATAAGTAATTGGC--................................................................................................................................................................................................................................26121.00210000000000000000000000000000000000000100000000000000000000000000000000000000011010000010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200130000000000000000000000000000000000000000000000000000000000000000000000030000110000000000000000010300000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGCTAGGATTAT-AGGT--------------ATATT....................26120.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000101400000
......TCCGTGA--------------A-------------------GGCATTC-----------AACA-------------------AGTCATC.........................................................................................................................................................................................................................................................................................................................................................................................................................26120.00200000000000000000000000000000000000000000001000010000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000002000200000010000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000800000
................................................................................................................................................TACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----GT.....................................................................................................................................................................................................................................................................................27120.002000000000000000000000000000000000000000000100000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000001300000
..............................................................................................................................................................................................................................................................................TAATTGGC--TA-AGAA-TCTG------------------TAATCAGT..........................................................................................................................................................................................26117.001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000001300000
...............................................................................................................................................................................TACAA--------------------------------------AAA----GTTGGACACTTCG---GGGT...................................................................................................................................................................................................................................................................25116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010200000010000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001100400000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGGATTAT-AGGT--------------ATATTT...................20115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007012500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................TCATCAAATA--TGCACG--ACA-TTTGTAAGC.............................................................................................................................................................................................................................................................................................................................................................................................28115.00150000000000000000000000000000000000000000000000000000000000000000000000000000022610000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGATTAT-AGGT--------------ATATTTTTAGGC-............25114.00140000000000000000000000000000000000000000010000000100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002020700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TTGGC--TA-AGAA-TCTG------------------TAATCAGTGTT---T...................................................................................................................................................................................27114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004400000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
..............................................................................................................................................................................................................................................................................TAATTGGC--TA-AGAA-TCTG------------------TAATCAGTG.........................................................................................................................................................................................27114.00140000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000010010000000000000000000000000000000000000000000000000000200000000000000010101000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000200100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAAGGCTAGGATTAT-AGGT--------------ATA......................26113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000200000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001800000
..........................................................................................................................................................................................................................................................................TAAGTAATTGGC--TA-AGAA-TCTG------------------TAAT..............................................................................................................................................................................................26113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004030300000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000
......TCCGTGA--------------A-------------------GGCATTC-----------AACA-------------------AGTCATCA........................................................................................................................................................................................................................................................................................................................................................................................................................27112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000
...............................................................................................................................................TTACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----GT.....................................................................................................................................................................................................................................................................................28111.00110000000000000000000000000000000000000001000000000100000000000000000000000000030100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000
........................................................................................................CACG--ACA-TTTGTAAGCTCTTCCAATTT..................................................................................................................................................................................................................................................................................................................................................................................27111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000012110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TATACAA--------------------------------------AAA----GTTGGACACTTCG---GGG....................................................................................................................................................................................................................................................................26111.00110000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000000100000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGGATTAT-AGGT--------------ATATT....................19110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005020300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----GTTGGA.................................................................................................................................................................................................................................................................................2819.0090000000000000000000000000000000000000000000000000000000000000000000000000000022010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATAAAAGGCTAGGATTAT-AGG........................................2519.0090000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000300000
.....................................................................................................................................................................................................................................................................................C--TA-AGAA-TCTG------------------TAATCAGTGTT---....................................................................................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003300200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TAC---------------CACATAAGTAATTGGC--TA-AGAA-TC......................................................................................................................................................................................................................2718.0080000000000000000000000000000000000000000000000000000000000010000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................TAATTGGC--TA-AGAA-TCTG------------------TAATCAGTGT........................................................................................................................................................................................2818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000400000
.......................................................................................................................................................................................................................................................................................................................................................T-ATTA--GAG--------------------GGAGTGTGATT----------AGAATCCT.....................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000500000
..................................................................................................TA--TGCACG--ACA-TTTGTAAGCTCTTCCAA.....................................................................................................................................................................................................................................................................................................................................................................................2817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................TACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----G......................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000300000
..................................................................................................TA--TGCACG--ACA-TTTGTAAGCTCTTC........................................................................................................................................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000020000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATCCGTGA--------------A-------------------GGCATTC-----------AACA-------------------AGTCATC.........................................................................................................................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000101000000000000000000300000
..........................................................................................................................................................................................................................................................................................................................................................TTA--GAG--------------------GGAGTGTGATT----------AGAATCC......................................................................................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000600000
.................................................................................................................................................................................................................................................................................TTGGC--TA-AGAA-TCTG------------------TAATCAGTGT........................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000001000000100000
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..........................................................................................................................................................................................................................................................................TAAGTAATTGGC--TA-AGAA-TC......................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................C-----------AACA-------------------AGTCATCAAATA--TGCACG--ACA-......................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................T-----T-ATTA--GAG--------------------GGAGTGTGATT----------AGA..........................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................TACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----GTT....................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................TTGTAAGCTCTTCCAATTTTAATTCGC..........................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TAAGTAATTGGC--TA-AGAA-TCTG------------------TAATCAGT..........................................................................................................................................................................................3012.0020000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ACTTCG---GGGTAC---------------CACATAAGTAATTGGC--................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ATTTT-----T-ATTA--GAG--------------------GGAGTG............................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................ATACAA--------------------------------------AAA----GTTGGACACTTCG---GT.....................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................CATTC-----------AACA-------------------AGTCATCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TAATTCGCTTTACTAAA------GCAG--------ATTGTAT........................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AG--------ATTGTATACAA--------------------------------------AAA----GTTGGACACT.............................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ACG--ACA-TTTGTAAGCTCTTCCAATTTTAA...............................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................AATTCGCTTTACTAAA------GCAG--------ATTGTATA.......................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ATTGGC--TA-AGAA-TCTG------------------TAATCAGTGTT---T...................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TTACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----.......................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TGCACG--ACA-TTTGTAAGCTCTTCCAATT...................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAAGGCTAGGATTAT-AGGT--------------ATAT.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................TCATCAAATA--TGCACG--ACA-TTTGT.................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CG--ACA-TTTGTAAGCTCTTCCAATTT..................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGATT----------AGAATCCTAACTA--T.............................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TTTTATTTT-----T-ATTA--GAG--------------------GGAGTGTGA.........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................TTCG---GGGTAC---------------CACATAAGTAATTGGC--A...............................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TGTATACAA--------------------------------------AAA----GTTGGACACTTCG---GGG....................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ATTGGC--TA-AGAA-TCTG------------------TAATCAGTG.........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATCCGTGA--------------A-------------------GGCATTC-----------AACA-------------------AGT.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................A-TCTG------------------TAATCAGTGTT---T...................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TCTG------------------TAATCAGTGTT---TTTTTTTTTATT........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----GTTGGAC................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................C---------------CACATAAGTAATTGGC--TA-AGAA-TCT.....................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TTGGACACTTCG---GGGTAC---------------CACATAAG..........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................CCAATTTTAATTCGCTTTACTAAA------GCAG--------A..............................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTATATAAAAGGCTAGGA................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CCGTGA--------------A-------------------GGCATTC-----------AACA-------------------AGTCATC.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................CACG--ACA-TTTGTAAGCTCTTCCAA.....................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..A-CATCCGTGA--------------A-------------------GGCATTC-----------AACA-------------------AGTC............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................GTCATCAAATA--TGCACG--AC........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TT-----T-ATTA--GAG--------------------GGAGTGTGATT----------AGA..........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................TA-AGAA-TCTG------------------TAATCAGT..........................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TCG---GGGTAC---------------CACATAAGTAATTGGC--T...............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................ACTTCG---GGGTAC---------------CACATAAGTAATTGGC--AT-C............................................................................................................................................................................................................................3111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCCTAACTA--TT--ATA-----T--TA---AACAGTA...................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TCGCTTTACTAAA------GCAG--------ATTGTATAC......................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GTTGGACACTTCG---GGGTAC---------------CACATAAG..........................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................CATTC-----------AACA-------------------AGTCATCAAATA--TGCACG--A.........................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TCTTCCAATTTTAATTCGCTTTAC.....................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..A-CATCCGTGA--------------A-------------------GGCATTC-----------AACA-------------------AGT.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ACA-TTTGTAAGCTCTTCCAAT....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TACTAAA------GCAG--------ATTGTATACAA--------------------------------------AAA----GG.....................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................TT----------AGAATCCTAACTA--TT--ATA-----T--TA---AA........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAA-CATCCGTGA------------AAA-------------------GGCATTC-----------AACA-------------------AGTCATCAAATA--TGCGCG--GCA-TTTGTAAGCTCTTCCAATTTTAATTCGCCTTACTAAA------GCAG--------ATTGTATGAAA---------------------------------------AA----TTTGGAGTCTTCG---GGGTAC---------------CACATAAGTAATTGGC--TA-AGAT-ACTG------------------TACTCAGTGTT---TTTAC------TTT-----T-ATTA--GAG--------------------GGAGTTTGACA----------AGAATCCTAACTA--CT--ACA-----G--TA---AACAGTAATTATACAAAAGACTAGGCTTAT-AGGT--------------ATATTTTTAGGC-TAAGCTTAACTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................TTCG---GGGTAC---------------CACATAAGTAATTGGC--................................................................................................................................................................................................................................2615.0051000004
.........................................................................................................................................................................................................................................................................................................................TCAGTGTT---TTTAC------TTT-----T-ATTA--GAG--------------------G.................................................................................................................................2511.0011000000
.......................................................................................................................................................................................................................................................................................................................................................T-ATTA--GAG--------------------GGAGTTTGACA----------AGAATCC......................................................................................................2611.0011000000
...............................................................................................................................................................................................................................................................................AATTGGC--TA-AGAT-ACTG------------------TACTCAGT..........................................................................................................................................................................................2511.0010000100
............................................................................................................................................................................GTATGAAA---------------------------------------AA----TTTGGAGTCTTCG---GG.....................................................................................................................................................................................................................................................................2511.0010000100
.................................................................................................................................................................................................................................................................................TTGGC--TA-AGAT-ACTG------------------TACTCAGTGTT---....................................................................................................................................................................................2611.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................TGACA----------AGAATCCTAACTA--CT--ACA-----G--T..............................................................................2511.0010100000
.........GTGA------------AAA-------------------GGCATTC-----------AACA-------------------AGT.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAAAGACTAGGCTTAT-AGGT--------------A........................2411.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................TGACA----------AGAATCCTAACTA--CT--ACA-----G--...............................................................................2411.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAAAGACTAGGCTTAT-AGGT--------------.........................2411.0011000000
.................................................................................................................................................................................................................................TTTGGAGTCTTCG---GGGTAC---------------C.................................................................................................................................................................................................................................................2011.0010100000
...........................................................................................................................................................................................................................AA----TTTGGAGTCTTCG---GGGTA..................................................................................................................................................................................................................................................................2011.0010000010
.................................................................................................................................................ACTAAA------GCAG--------ATTGTATG.......................................................................................................................................................................................................................................................................................................................................1811.0010000010
...........GA------------AAA-------------------GGCATTC-----------AACA-------------------AGTC............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
droYak3
AAA-CATCTGTGA------------AAA-------------------GGCATTC-----------AACA-------------------AGTCATCAAATA--TGCGCG--GCA-TTTGTAAGCTCTTCCAATTTTAATTCGCCTTACTAAA------GCAG--------ATTGTATAAAA---------------------------------------AA----TTTGCAGTCTTCG---GGGTAC---------------CACATAAGAAATTGGC--TA-AGAT-CCTG------------------TACTCAGTGTT---TTTTT------CTT-----T-ATTA--GAG--------------------GGAGTTTGACA----------AGAATCCTAACTA--CT--ATA-----T--T-------AGTAATTATACAAAAGACTAGGTTTAT-AGGT--------------ATATTTCTAGGC-TAAGCTTAACTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................AATTTTAATTCGCCTTACTAAA------GCAG--------AT.............................................................................................................................................................................................................................................................................................................................................2818.00800000000008
............................................................................................ATCAAATA--TGCGCG--GCA-TTTGTA................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.................................................................................................................................................................................................................................................................................TTGGC--TA-AGAT-CCTG------------------TACTCAGT..........................................................................................................................................................................................2311.00100001000000
............................................................................................................................................................................................................................................................................AGAAATTGGC--TA-AGAT-CCT.....................................................................................................................................................................................................................1911.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACAAAAGACTAGGTTT..............................................2011.00100000010000
................................................................................................................................................................................................................................................................................ATTGGC--TA-AGAT-CCTG------------------TACTCAGTGTT---....................................................................................................................................................................................2711.00100000010000
.......................................................................................................................................AATTCGCCTTACTAAA------GCAG--------ATT............................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACAAAAGACTAGGTTTAT-AGGT--------------.........................2511.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................T-ATTA--GAG--------------------GGAGTTTGACA----------AGA..........................................................................................................2211.00100100000000
.......................................................................................................................................................................................................................................GTCTTCG---GGGTAC---------------CACATAA...........................................................................................................................................................................................................................................2011.00101000000000
...................................................................................................................................................................................................................................................................................GGC--TA-AGAT-CCTG------------------TACTCAGT..........................................................................................................................................................................................2111.00100000010000
droEug1
CGT-CATCCGTGC------------GAA-------------------CGCAAAC-----------AAAA-------------------AGTCATCAAATA--TTCGCG--ACA-TTTGTAAGCTCTTCCAATTTTAATTCGTCTTACTAA-------GCAA--------ACTGTATAAA----------------------------------------------------GTCT-CT---GGGTAG---------------TACATAAGCAATTGGA--TA-CAAAACCTT------------------TATTCAGTGGT---TTT---------TT-----T-AGTA--GAGAGAG----------------AGAGTTTGACG----------AAAAACACAACTCTTCTATATA-----T--TA---TACAGTAACT-----ATAGGCTAGGATTAT-AGGT--------------AT---CTTAGGT-TAAGGTTAACTGSizeHit CountTotal NormTotal
No Reads
droBia1
AAT-CATCGGTGA------------AAT-------------------GGCAGTC-----------AA-A-------------------AGTCATCAAATA--TTCTCG--ACA-TTTGTAAGCTCTTCCAATTTTAATTCGTCTTACTAAA------AATG--------ATTGTATACAA----------------------------------------A----TTTTGAGTATATG---GGGTAG---------------CACATAAGCAATTGGT--CA-TAAT-CCTA------------------TGTTCAGTGGA---TAC--------TTT-----T-TTAA--GGG--------------------GGAGTTTCACA----------AGAAACCTAACTCTTCT--TTA-----T--TA---TACAGTAATTATACAATAGACTAGGATTGT-AGGT--------------A------TAGGC-TAAGTTTACCTGSizeHit CountTotal NormTotal
No Reads
droTak1
AAT-CATCGGTGA------------AAT-------------------GGCAGTG-----------AAAA-------------------AGTCATCAAATA--TTCGCG--ACA-TTTGTAAGCTCTTCCAATTTTAATTCGTCTCACTAAA------GAAA--------ATTGTATACAA----------------------------------------A----TTTTGAGTCTATG---GGGTAG---------------CACTTAAGCAATTGGC--AA-AGAT-CCTA------------------TATTCAGTGGA---TAA--------TTT---T-A-TATA--GGG--------------------GGAGTTTGACA----------AGAAACATAACTCTTCT--ATA-----T--TA---TACAGTAATTATACAATAGACTAGGATTTT-AGGT--------------A------TAGGC-TAAGTTTACCTGSizeHit CountTotal NormTotal
No Reads
droEle1
TAT-CATCCGTCA------------AAA-------------------GGAAGTC-----------AAAA-------------------AGTCCTCA-ATA--TGCTCG--ACA-TTTGTAAGCTCTTCCAATTTTAAATCGTCTTACTAAA------GCAA--------ATTGTATACAA----------------------------------------A----TTTTGAGTACATG---TGGTAG---------------CGCATAAGCAATTGGC--TA-AGAT-CCTG------------------TATTCAGTGCT---TTTTA------TTT-----T---TT--GATGG------------------AGAGAGCGACA----------AC-----TTTCTCTTCA--AAACCATATAGTTAATTACAGTAAT-------TAGACTAGGACTTTAAGGT--------------ATATTCTTAGGC-TAAGCTTACCTGSizeHit CountTotal NormTotal
No Reads
droRho1
AAT-CATCCGTCA------------AAA-------------------GGGAGT------------AAAA-------------------AGTCGTCAGATA--TTCTCG--ACA-TTTGTAAGCTCTTCCAATTTTAAATCGTCTTACTAAA------GGAA--------ATTGTATACAG----------------------------------------A----TTTTGATTATATG---GGGTAG---------------TACATAAGTAATTGGC--TA-AGAT-CCTG------------------TATTCAGTGCT---TTT----------T---T-A-A-AT--GAG--------------------GGAGT--AAAA----------AGAAAC-TATATATTCTA-ATATTATATAGTTAATTGCAGT-------AAATAGACTAGGATTAT-AGGT--------------ATCTGCTTAGGC-TAAGTTTACCTGSizeHit CountTotal NormTotal
No Reads
droFic1
TCTTCAACCATCA------------AGA-------------------GGAAGTC-----------AAAA-------------------AGTCAACAAAAA--TTCGCG--ACA-TTTGTAAGCTCTTCCAATTTTAATTCGTCTTACTAAA------GCAA--------ATTGTACACAA----------------------------------------A----TT---------TG---GGGTAG---------------CACATAAGAAATTGGC--TA-AGAT-CATA------------------TGATAAGTGGTGTTTTTTT------TTT-----A-AATA--GAG--------------------GGAGTTTGACA----------AGAAATCTAACTCTTTT--ATA-----T--AA---ATCCTTAATTATACAATATGTTAGGACTGT-AGGT--------------ATCTTCTTAGAC-TAAGATTAACTGSizeHit CountTotal NormTotal
No Reads
droKik1
ATC-CATCCGATC------------AGC------------CAAAAAAGGAAGCC---GAG-----AAAT-------------------CCCCGTCAGACTTGTGTGCG--ACA-TTTGTAAGCTCTTCCAATTTTAACTTGTC--ACTAAATAAGCAACAA--------GCTGTATACAA----------------------------------------A----ATTTAAGTCGTCG---GGATTT---------------ACCATTAGCAATTGGCGCTA-AGAT-CCTG------------------AATTCTCTATA---TAT--------TTTTTTT-TAATTA--GAGAGAGAGAGAAAGAGAAAGAGGAAGTTTGACC----------AGAAACTAAACTCTTCT--TTA-----C--TA----------TGTATACTAGAAATTAGG------AGGT--------------ATCTTCCTAGGC-TAAGTTTAATTGSizeHit CountTotal NormTotal
No Reads
droAna3
ATC-CATCCGCCA------------GTT-------------------GGAGGTC---ACAAGATCAACA-------------------GTTCATCGGGCT--TAACCG--ACACTTTGTAAGCTCTTCCAATTTTAATTCGTGTTACTAAA-----AGCGA--------ACTGTG----A----------------------------------------A----ATTCGATTGATTT---GGGTAT---------------TTAATAAGCGATTGGC--GGAAGTT-ACTC------------------TATTTAGGGGT---TTT-------------------------------------------------------------------------CAGAACTGTTCG--TAA-----T--TA---TATCCTAGCTGTAATATATTTTAGAATTAG-TGAT--------------CTATTCGTAAGC-TAAGTTTAATTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................AATAAGCGATTGGC--GGAAGTT-A.......................................................................................................................................................................................................................2211.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TGAT--------------CTATTCGTAAGC-TAAGTTT.....2411.001000010
......................................................................................................................................................................................................................................................T---------------TTAATAAGCGATTGGC--GGAAGTT-AC......................................................................................................................................................................................................................2611.001000010
...............................................................................................................................................................GA--------ACTGTG----A----------------------------------------A----ATTCGATTG..............................................................................................................................................................................................................................................................................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG-TGAT--------------CTATTCGTAAGC-C...........2011.001010000
.....................................................C---ACAAGATCAACA-------------------GTTCATCGGG......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................AA-----T--TA---TATCCTAGCTGTAAT...........................................................2011.001010000
...................................................................................................................................................................................................................................................GTAT---------------TTAATAAGCGATTGGC--GGA.............................................................................................................................................................................................................................2311.001000010
droBip1
ATC-CAGCCACCAGCTGCGTCA---TAT-------------------GGAGCTCAAGACAAGATCAGCA-------------------GTTCATCGGGCT--TAACCG--ACACTTTGTAAGCTCTTCCAATTTTAAATCGTGTTACTAAA------TCGA--------ACTCTAAAAAA--------------------------------------TGT----ATTCGATTGATTT---GGGTAT---------------TTTATAAGCGATTGGC--GGAAGTT-ATTGTATTG----------------TTTGGGGT---TT----------TC-----A-AACA--GCA--------------------ACAGTTTTCCGACACGAATTGGGAATCGGAACTGTTCG--TAA-----T--TA---TATCCTAGTTGTAATATATTTTAGAA-----------------------------TTAAGT-TAAGGTTAATTGSizeHit CountTotal NormTotal
No Reads
dp5
ATC-CATCCATTC------------AAG-------------------GGAA--------------------------------------GCCAGCAAGTT--TGCGCG--CCA-TTTGTAAGCTCTTCCAATTTTAATTCGTGTCATTAAG------------------------------------------------------------------------------------------TGGGTC---------------CCCGTTATGAATTGGC--TA-AGAT-TATT------------------GAACAAAACCA---TTT--------C-----T-AGACTG--GGG--------------------AAAAGTTGAAG----------GAAAAT------A--CT--ACACCATGTAGTA---------AATTGTACAATAGAATAGTATTAG-TGGT--------AATGCTATCTTTTTAAGC-TAAGTTTACCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................TAAG------------------------------------------------------------------------------------------TGGGTC---------------CCCGTTATGAATTGGC--................................................................................................................................................................................................................................2613.0030300000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-TGGT--------AATGCTATCTTTTTAAGC-............2411.0010100000000
.........................................................................................................................................................................................................................................................................................................................CAAAACCA---TTT--------C-----T-AGACTG--GGG--------------------AAAAGTT...........................................................................................................................2911.0010000001000
...................................................................................................................................................................................................................................................................................GGC--TA-AGAT-TATT------------------GAACAAAACCA---TT..................................................................................................................................................................................2611.0010100000000
..............................................................................................................................................................................................................................................................................................T-TATT------------------GAACAAAACCA---TTT--------C-----T-AGACG............................................................................................................................................................2611.0010000000100
............................................................................................................................CTTCCAATTTTAATTCGTGTC.......................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
ATC-CATCCATTC------------AAG-------------------GGAA--------------------------------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................AAAACCA---TTT--------C-----T-AGACTG--G........................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................ATTGGC--TA-AGAT-TATT------------------GAAC..............................................................................................................................................................................................2011.0010000000001
......................................................................................................................................TAATTCGTGTCATTAAG------------------------------------------------------------------------------------------TGGGTC---------------CCCGT.............................................................................................................................................................................................................................................2811.0010100000000
droPer2
ATC-CATCCATTC------------AAG-------------------GGAA--------------------------------------GCCAGCAAGTT--TGCGCG--CCA-TTTGTAAGCTCTTCCAATTTTAATTCGTGTCATTAAG------------------------------------------------------------------------------------------TGGGTC---------------CCCGTTATGAATTGGC--TA-AGAT-TATT------------------GAACAAAACCA---TTT--------C-----T-AGACTG--GGG--------------------AAAAGTTGAAG----------GAAAAT------A--CT--ACACCATGTAGTA---------AATTGTACAATAGACTAGTATTAG-TGGT--------AATGCTATCTTTTTAAGC-TAAGTTTACCTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTTTAAGC-TAAGTTTACCT.2311.001010000
...................................................................................................................................................TAAG------------------------------------------------------------------------------------------TGGGTC---------------CCCGTTATGAATTGGC--................................................................................................................................................................................................................................2611.001010000
..........................................................................................................................................................................................................................................................................TTATGAATTGGC--TA-AGAT-TATT------------------GAAC..............................................................................................................................................................................................2611.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GTA---------AATTGTACAATAGACTAGTATT..............................................2511.001010000
droWil2
------------------------------------------------------------------------------------------------------------------TTTGTAAGCTCTTCCAATTTTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AC---ATCGACG----------------------------------------TC-----------AG-C-------------------AATAATCGCAAC--TGCTCG--GGA-CTTGTAAGCTCTTCCAATTTTAAACTGTCAAACAAAA------GCAA--------AAAAAAAAAA----GTTAAATATA-------ATATGTATGTTAAGTGAGATT----ATTGAAGATTCCAAATGGATATCGCAAATTTATGAATAGCAATAACAATTGGC--TA-TATT-AGTT------------AATTTGTGTTCAGTG--------------------------------GGG--------------------GGC-C--ATCT----------AGGGTA-TATATATATAT-ATTATATATATTTATTCACATA-------GATTAGGTTAGTTTTAA---GCACAACTTTTTTGTTGTTCATTTATGC-TAAGGTTAATTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................AACTGTCAAACAAAA------GCAA--------AAAAAAAAG......................................................................................................................................................................................................................................................................................................................................2812.002000000000000000000000000001100000000000000000000000000000000000
........................................................................................AATAATCGCAAC--TGCTCG--GGA-CTTGT.................................................................................................................................................................................................................................................................................................................................................................................................2612.002001000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CGCAAATTTATGAATAGCAAT............................................................................................................................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACATA-------GATTAGGTTAGTTTTAA---.........................................2611.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAGGTTAGTTTTAA---GCA......................................2011.001000000000000001000000000000000000000000000000000000000000000000
..................................................................G-C-------------------AATAATCGCAAC--TGCTCG--GGA-CT....................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................AC--TGCTCG--GGA-CTTGTAAGCTCTTCC.......................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ATATCGCAAATTTATGAATAGCA..............................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TGAGATT----ATTGAAGATTCCAAATGGATA..................................................................................................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................GTGTTCAGTG--------------------------------GGG--------------------GGC-C--ATCT----------.............................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................TTATGAATAGCAATAACAATT.....................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCACATA-------GATTAGGTTAGTTTT..............................................2511.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTCACATA-------GATTAGGTTAGTTT...............................................2711.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
ACA-CGGCGGAGA------------GCTAAGCCTATCACCACGT---CGAGCCT-----------CAGT-------------------AGTCATCGCAGC--TGTTCGGGACT-TTTGTAAGCTCTTCCAATTTTAATCTGTTC-ATAAAA------GAAGAAAATAGAAAAGAAAAAA----GAAAAATATATATATATTAAAATATGTTACGTGAGAA---------------T-----GGATATATCAAATTTATAAATGGC--AATTAATTGG------------CTA------------------TATTAGATGAT---TTG---------TT---TAT-GTCT--GGG--------------------GGCATGTATA------------GGGTA-T--------------------ATTTATTCATATA-------GTTTAGGCTAGTTTTAA---GCACAACTTTTTTGTTGTTCACTTATGC-TAAGGTTAATTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................TATAAATGGC--AATTAATTGG------------C......................................................................................................................................................................................................................2111.001100000
..........................CTAAGCCTATCACCACGT---CGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
............................................................................................................................................................................................................ATATGTTACGTGAGAA---------------T-----GGATATATC..............................................................................................................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................A-T--------------------ATTTATTCATATA-------GTTTAGGCC....................................................2411.001000010
...............................................................................................................................CCAATTTTAATCTGTTC-ATA....................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..................................ATCACCACGT---CGAGCCT-----------CAGT-------------------AGTC............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTGTTCACTTATGC-TAAG........2511.001000001
..................................................................................................................................................................................................................................................................................................TA------------------TATTAGATGAT---TTG---------TT---TAT-GT.............................................................................................................................................................2311.001100000
droGri2
CAG-CAACAACAAGAAAAATCATCCGGC-------------------GGAGTGT---GCAGCATCGACAGTCTTCACGTTAACATTGCAGCCATCA---C--TGTTTG--GGA-CTTGTAAGCACTTCCAATTTTAATCTGTCGCAAGAAA------AAGT--------ACTACACC--ATTAAAAAA----ATGTCTTTTTAAGTATGTAAAATGAGATTCCAGAATTGAATAAC--------------AAGTTTATT---CAATAAAATAATTAAA--CA-AGCT-ATTA--TAGTCAGGTA------TATTCAATAAT---TTG------------------CTTAGCGAG--------------------GG--CATGTA------------GGGTA-T--------------------ATTTATCCATTTA-------GGTTAGGCTAATTTTAA---GCACAACTTTTTTGTTGTTTACTTAAGCTTAAGGTTAATTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................TTTG--GGA-CTTGTAAGCACTTCCA......................................................................................................................................................................................................................................................................................................................................................................................2311.00110
...............................................................................................................................................................................................................................................................................................................................AT---TTG------------------CTTAGCGAG--------------------GG--CATGTA------------GG..........................................................................................................2411.00101

Generated: 05/18/2015 at 08:34 PM