ID:

dsi_10910

 Coordinate:

3r:14900293-14900665 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.7 -18.6 -18.6

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_10910  3r:14900315-14900329 -
  2. dsi_11108  3r:14900683-14900697 -
star
  1. dsi_10910  3r:14900455-14900474 -
  2. 3r:14900931-14900950 -

Sense Strand Reads

CAACTGGACTCCAAATTGAGTTCCACAGTCCAAAGTCCAGAAGCGGAGAGGTCCAAAGAAACTCCAGCGCCCAAGAAGAATGTGAAAAAAACGCCGGCTGCACTTCAGTGCGTCGACGCGGCTGCAAATCTCCTGGCGGAACAATCATCTAATGAAATGAATGAAGAAGGACCCTCTGCGCCCAAGAAGAATGTGAAGAAAGTGCCGGCTGCACGTCAGTGTGTCAAGGTGACTGCAAATCTTCTGGAGGAACAAGCATCTAATGAAAATGAAGTAAGAAATATTTACAGATATATAAATATTTGTTCAAAAATTACAAAATGAAAAATATTTAGAAAACAGGAACAAAAAGGAAGGACAAAAAGGAACAACTGGACTCCAAATTGAGTTCCACAGTCCAAAGTCCAAAATCAGCGAGGTCCAAAGAATCTCCAAGGTCCAAAGAAACTCCTGCGCCCAAGAAGAATGTGAAA
*************************************************************************************************************************************************************************************************************************************************..(((..(((((.....((....)).......(((((.....))))).......(((((((((.((((............)))))))))))))...........(((...((.((..((............))..))))...))).))))).))).....************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..................AGTTCTACAGTCCGACGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 3 12 7.58 91 77 14 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTACAGTCCGACGTC.................................................................... 19 3 12 7.58 91 77 14 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTACAGTCCGACGTC.................................................................... 20 3 5 6.20 31 23 8 0 0 0 0 0 0
.................GAGTTCTACAGTCCGACGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 3 5 6.20 31 23 8 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................AAACAGAGTTCTACAGTCCA......................................................................... 20 3 9 2.11 19 16 3 0 0 0 0 0 0
............AAACAGAGTTCTACAGTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 3 9 2.11 19 16 3 0 0 0 0 0 0
................TGAGTTCTACAGTCCGACGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 3 3 1.00 3 2 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................CGAAATGGAACAACTGGAC................................................................................................ 19 2 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTCTACAGTCCGACGTC.................................................................... 21 3 3 1.00 3 2 1 0 0 0 0 0 0
.............AACAGAGTTCTACAGTCCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 3 5 0.80 4 3 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................AACAGAGTTCTACAGTCCAAA....................................................................... 21 3 5 0.80 4 3 1 0 0 0 0 0 0
............AAACAGAGTTCTACAGTCCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 21 3 4 0.75 3 1 2 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................AAACAGAGTTCTACAGTCCAA........................................................................ 21 3 4 0.75 3 1 2 0 0 0 0 0 0
..................................................................GCGCCCAAGACGAACGTGAAA.................................................................................................................................................................................................................................................................................................................................................................................................. 21 2 3 0.67 2 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCCAAGACGAACGTGAAA 21 2 3 0.67 2 2 0 0 0 0 0 0 0
..................AGTTCCACAGTCCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 15 0 2 0.50 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCACAGTCCAA........................................................................ 15 0 2 0.50 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................TTCTGGAGGAACAAGCATCT.................................................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................................................ATTGAGTTCTACAGTCCGACG...................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................AAGAGAGTTCTACAGTCCAAAG...................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0
.............AAGAGAGTTCTACAGTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0
..............ATTGAGTTCTACAGTCCGACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................TTCTGGAGGAACAAGCATCTA................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................TCTTCTGGAGGAACAAGCATC..................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................AAACAGAGTTCTACAGTCCAAA....................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................AATGAAAATGAAGTAAGAAAT............................................................................................................................................................................................... 21 0 3 0.33 1 0 0 0 1 0 0 0 0
............AAACAGAGTTCTACAGTCCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTACAGTCCGAAATC.................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAGAAACTGCCGGCTGGACG.................................................................................................................................................................................................................................................................. 20 2 3 0.33 1 1 0 0 0 0 0 0 0
..................................................................GCGCCCAAGACGAAAGTGAAA.................................................................................................................................................................................................................................................................................................................................................................................................. 21 2 3 0.33 1 1 0 0 0 0 0 0 0
...................................................................................GAAAAAAACGCCGGCTGCA................................................................................................................................................................................................................................................................................................................................................................................... 19 0 3 0.33 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................TGAAGAAACTGCCGGCTGGACT.................................................................................................................................................................................................................................................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCCAAGACGAAAGTGAAA 21 2 3 0.33 1 1 0 0 0 0 0 0 0
.................GAGTTCTACAGTCCGAAATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTACAGTCCGAAG...................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0
.................GAGTTCTACAGTCCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................AAAACGAGTTCTACAGTCCA......................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAGTTCTACAGTCCAAA....................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0
............AAAAAGAGTTCTACAGTCCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0
............AAAACGAGTTCTACAGTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGTCCAAAGCA........................... 16 1 9 0.22 2 0 0 2 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTACAGTCCAA........................................................................ 16 1 5 0.20 1 1 0 0 0 0 0 0 0
.................GAGTTCTACAGTCCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 16 1 5 0.20 1 1 0 0 0 0 0 0 0
.................GAGTTCTACAGTCCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 2 17 0.18 3 3 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTACAGTCCGAA....................................................................... 17 2 17 0.18 3 3 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................................AACAACTGGACTCCACCT......................................................................................... 18 2 6 0.17 1 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTACAGTCCGACGT..................................................................... 19 3 6 0.17 1 1 0 0 0 0 0 0 0
.................GAGTTCTACAGTCCGACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 3 6 0.17 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTACAGTCCAAAA...................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0
.................GAGTTCTACAGTCCAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................AATAGAGTTCTACAGTCCGAA....................................................................... 21 3 15 0.13 2 2 0 0 0 0 0 0 0
.............AATAGAGTTCTACAGTCCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 3 15 0.13 2 2 0 0 0 0 0 0 0
.................AAGTTCTACAGTCCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.10 2 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................ATAAGGGAGAACAAAAAGGAA......................................................................................................... 21 3 20 0.10 2 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................................................ACAGAGTTCTACAGTCCAAA....................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCTACAGTCCAAA....................................................................... 17 2 20 0.10 2 2 0 0 0 0 0 0 0
.................................................................................................................................................................................................TGAAGAATGTGCCGG......................................................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 1 0 0 0 0
..............................................................TCCAGCGCCGAAGTAGAA......................................................................................................................................................................................................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 1 0 0 0 0
..............ACAGAGTTCTACAGTCCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0
............AAAAAGAGTTCTACAGTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................AAGTTGAGTTCTACAGTCCGA........................................................................ 21 3 11 0.09 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAGTTCTACAGTCCA......................................................................... 20 3 11 0.09 1 1 0 0 0 0 0 0 0
............AAGTTGAGTTCTACAGTCCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 21 3 11 0.09 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTACAGTCCGATGTC.................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................................................................AATCATCGAGGTCCCAAAAA............................................. 20 3 14 0.07 1 1 0 0 0 0 0 0 0
..................AGTTCTACAGTCCGATGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0
.................GAGTTCTACAGTCAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 2 17 0.06 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTACAGTCAAAA....................................................................... 17 2 17 0.06 1 1 0 0 0 0 0 0 0
..................AGTTCCACAGTCCGACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 2 17 0.06 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCACAGTCCGACG...................................................................... 17 2 17 0.06 1 1 0 0 0 0 0 0 0
............................................................................................................................................................ATGAATGAAGAAGAA.............................................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................................................................................................................................AGAGTTCTACAGTCCAA........................................................................ 17 2 20 0.05 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................GGAACAAGCTTCTAAC................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1
................AGAGTTCTACAGTCCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 1 0 0 0 0 0
..........................................................................................................AGTGCGTCGACCCAGC............................................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTACAGTCCAACGA..................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0
.................GAGTTCTACAGTCCAACGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................AGAAGAAATGAACAAAAAGGA....................................................................................................................... 21 3 20 0.05 1 0 0 0 0 1 0 0 0
.......................................................................TAAGAAGACTGTGAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................. 21 3 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

GTTGACCTGAGGTTTAACTCAAGGTGTCAGGTTTCAGGTCTTCGCCTCTCCAGGTTTCTTTGAGGTCGCGGGTTCTTCTTACACTTTTTTTGCGGCCGACGTGAAGTCACGCAGCTGCGCCGACGTTTAGAGGACCGCCTTGTTAGTAGATTACTTTACTTACTTCTTCCTGGGAGACGCGGGTTCTTCTTACACTTCTTTCACGGCCGACGTGCAGTCACACAGTTCCACTGACGTTTAGAAGACCTCCTTGTTCGTAGATTACTTTTACTTCATTCTTTATAAATGTCTATATATTTATAAACAAGTTTTTAATGTTTTACTTTTTATAAATCTTTTGTCCTTGTTTTTCCTTCCTGTTTTTCCTTGTTGACCTGAGGTTTAACTCAAGGTGTCAGGTTTCAGGTTTTAGTCGCTCCAGGTTTCTTAGAGGTTCCAGGTTTCTTTGAGGACGCGGGTTCTTCTTACACTTT
************************************************************************..(((..(((((.....((....)).......(((((.....))))).......(((((((((.((((............)))))))))))))...........(((...((.((..((............))..))))...))).))))).))).....************************************************************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR902009
testis
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..........GGTGTACCTCAAGGTGACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 3 8 2.75 22 19 3 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................GGTGTACCTCAAGGTGACAG........................................................................... 20 3 8 2.75 22 19 3 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................GGTGTACCTCAAGGTGACAGG.......................................................................... 21 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0
..........GGTGTACCTCAAGGTGACAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................CACGCAGCTGCGCCGACGTTT......................................................................................................................................................................................................................................................................................................................................................... 21 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................................................TACCTCAAGGTGTCAGGA......................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................TCCTTCCTTTTTTGGCTTGTTG..................................................................................................... 22 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
..............TACCTCAAGGTGTCAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGGTTCGTTGAGGA..................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................GGTTTCTTCTTACACATATTTC............................................................................................................................................................................................................................................................................... 22 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0
...............................TTTCAGGTCTTCGCTACTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0
..................................................................CGCGGGTTCTTCTTACAC..................................................................................................................................................................................................................................................................................................................................................................................................... 18 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGGTTCTTCTTACAC... 18 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CGCGGGTTCTTCTTACAC...................................................................................................................................................................................................................................................................................... 18 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TGATGTTTCGAAGACC.................................................................................................................................................................................................................................. 16 2 20 0.10 2 0 0 0 0 0 0 2 0 0 0
.......................................................................................TTTTGCGGGCTAGGTGAAG............................................................................................................................................................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0
............................AGGTTTAAAGTCTTCGACTC......................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1
...................................AGGTCTTCGGCACTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................... 16 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................GTTCCACGGACGTTT.......................................................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................GCAACTGCGCCGACG............................................................................................................................................................................................................................................................................................................................................................ 15 1 19 0.05 1 0 0 0 0 0 0 1 0 0 0
..........................................................TTTGAGGTCGCTGGGTCAT............................................................................................................................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..................................................................................ACTTGTTGTGCGGCCG....................................................................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..............TACCTCAAGGTGACAGGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................ATGGCTATATATTTA............................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................................................................................................................TACCTCAAGGTGACAGGTG........................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:14900243-14900715 - dsi_10910 CAACTGGACTCCAAATTGAGTTCCACAGTCCAAAGTCCAGAAGCGGAGAGGTCCAAAGAAACTC------------------CAGCGCCCAAGAAGAATGTGAAAAAAACGCCGGCTGCACTTCAGTGCGTCGACGCGGCTGCAAATCTCCTGGCGGAACAATCATCTAATGAAATGAATGAAGAAGGACCCTCTGCGCCCAAGAAGAATGTGAAGAAAGTGCCGGCTGCACGTCAGTGTGTCAAGGTGACTGCAAATCTTCTGGAGGAACAAGCATCTAATG---------AAAATGAAGTAAGAAATATTTACAGATATATAAATATTTG---TTCAAAAATTACAAA-------------ATGAAAAATATTTAGAAAACAGGAACAAAAAGGAAGGACAAAAAGGAACAACTGGACTCCAAATTGAGTTCCACAGTCCAAAGTCCAAAATCAGCGAGGTCCAAAGAATCTCCAAGGTCCAAAGAAACTCCTGCGCCCAAGAAGAATGTGAAA------
droSec2 scaffold_0:15766111-15766543 - CAACTGGACTCCAAATTGAGTTCCACAGTCCAAAGTCCAGAAACAGCGAGGTCCAAAGAATCTCCCAGGTCCACAGAAACTCTTGCGCCCAAGAAGAATGTGAAAAAAACGCCGGCTGCACTTCAGTGCGTCGACGCGGCTGCAAGTCTCCTGGCGGAACAATCATCTAATGAAATGAATGAAGAAGGACCCTCTGCGCCCAAGAAGAATGTGAAGAAACCGCCGGCTGCACGTCAGTGTGACAAGGTGGCTGCAAATCTTCTAGAGGCACAAGAATCTAATG---------AAAGTGAAGTAAGAAATATCCAAAGATATTCATTAATATA---TTAAAATATTACAAA-------------ATATAAAATGCTTAGAAAACAGGCACAAAAAAGAAGGTCGAAAAA---CTACCGTCATCCAAAATAAGTTCCACA------AGTCCAGAAGCAGCGA---CCA----------------------------------------------------AAGA
dm3 chr3R:6174932-6175306 + CAACTGGATTCCAAATTGAGTTCCACAGTCCAAAATACAGAAGCAGCGAGGTCCAAAGAAACTC------------------CTGCACCCAAGAAGAATGTTAAGAAACTGCAGGCTGCACTTCCGTGCGCCGACGCGGCTGCAAATCTTTTGGAGGAACAAGCATCTAATGAAATGAATGAAGAAGGACCTCCTGTGCCCAAGAAAAATGTGAAGAAACTTCCGGCTGCACGTCAGTGTGTCAAGGTGGCTGCAAATCTTCTAGACGCACAAGAATCTATCG---------AAAATGAAGTAAGAAATATCCAAAGATATAAAAATATTTG---TTCAAACATTACAAA-------------ATATAAAATATTTAGAAAACAGGAACAAAAAGGAAGGATGGGAAGCAACTGC--------------------------------------------------------------------------------------------------------AGG
droYak3 3R:10202110-10202393 + --------------------------------------------------GTCCAAAGAACCTC------------------CGGCGCC---------------------------------------------------------------------------------------------------------------CAAGAAGAATGCGAAGAAACTGCCGGATGTACGAGAGTCCGCCGACGTGGCTGTAAATCTTCCCAAGACCCTGGTATCTGAGGTACAATCTCATAAGACAGTAAGAAATATTCT-ATATATATACACACTTA---TTAATATATTATGAA-------------AAATAAAATAAGCAGGCAGCAGATACAAAAAAAAAGGGTGAAAAG---CAGCCGGCTTCCAAAGTGAGTTCCACAATCGAAAGTCCTGAAGCAGCGA---CCA------------------------------------AACAAAATGTAAGATTAAGA
droBia1 scf7180000302402:8257638-8257848 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTCCTGCTCCCAAGAAGGATGTGAAGGAGCTGCAGGTGGCCCGCCAGTCGCTGCGTGACGCAATGAATCTCCTGGCCGAAAAAACATCTAACG---------ACGAAGAGGTTAGTAAGGATTATATTTACATCCATCTTAAACCTTACCATTCTTTGAGATAGGAAACTGCCATGGGAAAAAATCAGAAGTCGGGAAAGAAAATGGTTGATA-------------------------------------------------------------------------------------------------------------------AAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAACTGGACTCCAAATTGAGTTCCACAGTCCAAAGTCCAGAAGCGGAGAGGTCCAAAGAAACTC------------------CAGCGCCCAAGAAGAATGTGAAAAAAACGCCGGCTGCACTTCAGTGCGTCGACGCGGCTGCAAATCTCCTGGCGGAACAATCATCTAATGAAATGAATGAAGAAGGACCCTCTGCGCCCAAGAAGAATGTGAAGAAAGTGCCGGCTGCACGTCAGTGTGTCAAGGTGACTGCAAATCTTCTGGAGGAACAAGCATCTAATG---------AAAATGAAGTAAGAAATATTTACAGATATATAAATATTTG---TTCAAAAATTACAAA-------------ATGAAAAATATTTAGAAAACAGGAACAAAAAGGAAGGACAAAAAGGAACAACTGGACTCCAAATTGAGTTCCACAGTCCAAAGTCCAAAATCAGCGAGGTCCAAAGAATCTCCAAGGTCCAAAGAAACTCCTGCGCCCAAGAAGAATGTGAAA------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................AGTTCCACAGTCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCACAGTCCAA..............................................................................1520.50100000000000001000
...................................................................................................................................................................................................................................................................TTCTGGAGGAACAAGCATCT...................................................................................................................................................................................................................................................2020.50100000000000001000
...................................................................................................................................................................................................................................................................TTCTGGAGGAACAAGCATCTA..................................................................................................................................................................................................................................................2120.50100000000000001000
.................................................................................................................................................................................................................................................................TCTTCTGGAGGAACAAGCATC....................................................................................................................................................................................................................................................2120.50100000000000001000
.......................................................................................................................................................................................................................................................................................AATG---------AAAATGAAGTAAGAAAT.....................................................................................................................................................................................................................2130.33100000000010000000
.....................................................................................................GAAAAAAACGCCGGCTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................1930.33101000000000000000
droSec2
CAACTGGACTCCAAATTGAGTTCCACAGTCCAAAGTCCAGAAACAGCGAGGTCCAAAGAATCTCCCAGGTCCACAGAAACTCTTGCGCCCAAGAAGAATGTGAAAAAAACGCCGGCTGCACTTCAGTGCGTCGACGCGGCTGCAAGTCTCCTGGCGGAACAATCATCTAATGAAATGAATGAAGAAGGACCCTCTGCGCCCAAGAAGAATGTGAAGAAACCGCCGGCTGCACGTCAGTGTGACAAGGTGGCTGCAAATCTTCTAGAGGCACAAGAATCTAATG---------AAAGTGAAGTAAGAAATATCCAAAGATATTCATTAATATA---TTAAAATATTACAAA-------------ATATAAAATGCTTAGAAAACAGGCACAAAAAAGAAGGTCGAAAAA---CTACCGTCATCCAAAATAAGTTCCACA------AGTCCAGAAGCAGCGA---CCA----------------------------------------------------AAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................CACGTCAGTGTGACAAGGTGG................................................................................................................................................................................................................................................................................2111.0010100
dm3
CAACTGGATTCCAAATTGAGTTCCACAGTCCAAAATACAGAAGCAGCGAGGTCCAAAGAAACTC------------------CTGCACCCAAGAAGAATGTTAAGAAACTGCAGGCTGCACTTCCGTGCGCCGACGCGGCTGCAAATCTTTTGGAGGAACAAGCATCTAATGAAATGAATGAAGAAGGACCTCCTGTGCCCAAGAAAAATGTGAAGAAACTTCCGGCTGCACGTCAGTGTGTCAAGGTGGCTGCAAATCTTCTAGACGCACAAGAATCTATCG---------AAAATGAAGTAAGAAATATCCAAAGATATAAAAATATTTG---TTCAAACATTACAAA-------------ATATAAAATATTTAGAAAACAGGAACAAAAAGGAAGGATGGGAAGCAACTGC--------------------------------------------------------------------------------------------------------AGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................TGAAGAAGGACCTCCTGTGCCCAAGAA............................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGTGAAGAAACTTCCGGCTG.....................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................GTTAAGAAACTGCAGGCTGC...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TGTTAAGAAACTGCAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...................................................TCCAAAGAAACTC------------------CTGCACCCAAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GTGTCAAGGTGGCTGCAAATCTT.....................................................................................................................................................................................................................................................................2321.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................GAATCTATCG---------AAAATGAA..............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................GCACGTCAGTGTGTCAAGGTGGCTGC............................................................................................................................................................................................................................................................................2621.0020000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................CAGGAACAAAAAGGAAGGATGGGA....................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AATGAATGAAGAAGGACCTCCTGTGC...................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AGGTGGCTGCAAATCTTCTAGACG..............................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TGCACGTCAGTGTGTCAAGGTG.................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................................................................................................................TGTGTCAAGGTGGCTGCAAATCTT.....................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................GTGTGTCAAGGTGGCTGCA...........................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GTGTCAAGGTGGCTGCAAAT........................................................................................................................................................................................................................................................................2020.5010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................GCACGTCAGTGTGTCAAGGTGGCT..............................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AAAATATTTG---TTCAAACG...................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droYak3
--------------------------------------------------GTCCAAAGAACCTC------------------CGGCGCC---------------------------------------------------------------------------------------------------------------CAAGAAGAATGCGAAGAAACTGCCGGATGTACGAGAGTCCGCCGACGTGGCTGTAAATCTTCCCAAGACCCTGGTATCTGAGGTACAATCTCATAAGACAGTAAGAAATATTCT-ATATATATACACACTTA---TTAATATATTATGAA-------------AAATAAAATAAGCAGGCAGCAGATACAAAAAAAAAGGGTGAAAAG---CAGCCGGCTTCCAAAGTGAGTTCCACAATCGAAAGTCCTGAAGCAGCGA---CCA------------------------------------AACAAAATGTAAGATTAAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droBia1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTCCTGCTCCCAAGAAGGATGTGAAGGAGCTGCAGGTGGCCCGCCAGTCGCTGCGTGACGCAATGAATCTCCTGGCCGAAAAAACATCTAACG---------ACGAAGAGGTTAGTAAGGATTATATTTACATCCATCTTAAACCTTACCATTCTTTGAGATAGGAAACTGCCATGGGAAAAAATCAGAAGTCGGGAAAGAAAATGGTTGATA-------------------------------------------------------------------------------------------------------------------AAGASizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 06:08 PM