ID:

dsi_10890

 Coordinate:

3r:17180079-17180154 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGGGATCCGGAGTGAGGTTGCAGCAGTCAATAGCTCGCGGTCGGTTATCGGTAGGTGGAGTCTCGAATGCTAGACTATTCTCAGCTTTTAAAGATAACATTTAATTGATAAACAATTTCTTTTTAGTTTGAAGCACCGGAGTGGAAATCAATCTCGGCGAACGCCAAGGACTTGGT
**************************************************.((((((..((((.(((.((((((....))).))).)))..))))..)))))).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 M023
head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..................................................................................................................................ATGCACCGGACTCGAAATC........................... 19 3 20 2.60 52 0 40 0 0 0 12 0 0 0
.........................................................................................................................TATCGTTTGAAGCACCGGAGTGGAAATC........................... 28 2 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................TTTGAAGCACCGGAGTGGAAATCAAT........................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....TCCGGAGTGAGGTTGCAGCAGTCAAT................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................AATCAATCTCGGCGAACGCCAAGGA...... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................AGTCATTAGCTCGCG......................................................................................................................................... 15 1 3 1.00 3 3 0 0 0 0 0 0 0 0
.........................GTCATTAGCTCGCGTT....................................................................................................................................... 16 2 20 0.30 6 6 0 0 0 0 0 0 0 0
................GTTGTTGCAGTTAATAGCTC............................................................................................................................................ 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0
......................GCAGTATGTAGCTCGCGGT....................................................................................................................................... 19 3 7 0.14 1 0 0 0 0 0 0 1 0 0
........................AGTCATTAGCTCGCGTT....................................................................................................................................... 17 2 9 0.11 1 1 0 0 0 0 0 0 0 0
...............................................TCGGTAGTTCGAGTCT................................................................................................................. 16 2 20 0.10 2 0 0 0 0 0 0 0 2 0
............................................TTCTCGGTAGGTGGA..................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 0 0 1
.................................................................................CAGCTTTTAAGGATA................................................................................ 15 1 18 0.06 1 0 0 0 1 0 0 0 0 0
........................AGTCATTAGCTCGCGT........................................................................................................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCCTAGGCCTCACTCCAACGTCGTCAGTTATCGAGCGCCAGCCAATAGCCATCCACCTCAGAGCTTACGATCTGATAAGAGTCGAAAATTTCTATTGTAAATTAACTATTTGTTAAAGAAAAATCAAACTTCGTGGCCTCACCTTTAGTTAGAGCCGCTTGCGGTTCCTGAACCA
**************************************************.((((((..((((.(((.((((((....))).))).)))..))))..)))))).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553488
RT_0-2 hours eggs
...........................................................CTGAGCTTAAGATGTGATAA................................................................................................. 20 3 6 0.17 1 1 0 0
..........................................................TCAGAGCTTGAGATCT...................................................................................................... 16 2 20 0.05 1 0 0 1
...............................................................................TAGTCGAAAATTTCTAGAGT............................................................................. 20 3 20 0.05 1 0 1 0

Generated: 04/23/2015 at 02:17 PM