ID:

dsi_1088

 Coordinate:

3r:26357186-26357335 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.4 -11.2

Flybase annnotation

exon [3r_26356671_26358594_+]; CDS [3r_26356671_26357940_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
GCCGCAACAGCAGCAGCAGCAGCAGCAACTCCATCAAAACACTGCAACAGGTAACAGCAACAACAACAATTTAATGCGCAGCACACTCGGTTTAGTATCCATTAAAACCAACAACACGCCGACAGCCAAGTCGGTTAGCAATCTGATGGCTGCTAACGCCACAGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGGTGGCTCCTCTATGGACATTGTGCAGCAGCAACAGCAACACAACAAG
*********************************************************************************************.....((((((.............((((((......))))))........))))))...************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
................................................................................................................................................................................................................................TGCAGCAGCAACAGCAAC........ 18 0 20 4.80 96 0 72 0 0 24 0 0 0 0 0 0
.....................GCAGCAACTCCATCAAAACACT............................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................TAAGTCGGTTAGCAATCTGATGGCTGC................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CAAGTCGGTTAGCAATCTGATGGCTG.................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................AGCCAAGTCGGTTAGCAATCTG......................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................AGTATCCATTAAAACCAACAACACGCC.................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................GTTAGCAATCTGATGGCT................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................CAAGTCGGTTAGCAATCTGATGGCTGC................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCTATGGACATTGTGCAGCAGCAACAG............ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................AATTTAATGCGCAGCACACTCGGTT.............................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TCCATTAAAACCAACAACACGCCGAC............................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................TCTATGGACATTGTGCAGCAGCAACAGC........... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..........................AACTCCATCAAAACACTGCAACAGAAA..................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCTATGGACATTGTGCAGCAGCAAC.............. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........GCAGCAGCAGCAGCAGCAACTCTATCA...................................................................................................................................................................................................................... 27 1 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................CAGTCGGATGGCTGCTAACC............................................................................................ 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................CAGCAAGATACTCGA...................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................GTTGAGTATCCGTTAAA................................................................................................................................................ 17 2 18 0.11 2 0 0 0 0 0 0 0 0 0 2 0
...........................................................................................................................................................ACCCCACAGCCAGCA................................................................................ 15 1 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0
..........CAGCAGCAGCAGCAGCAACTC........................................................................................................................................................................................................................... 21 0 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................AGCAAGATACTCGAG..................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................GGTTGCTCCTCTCTGGA............................... 17 2 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0
.................AGCAGCAGCAACTCCA......................................................................................................................................................................................................................... 16 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CGGCGTTGTCGTCGTCGTCGTCGTCGTTGAGGTAGTTTTGTGACGTTGTCCATTGTCGTTGTTGTTGTTAAATTACGCGTCGTGTGAGCCAAATCATAGGTAATTTTGGTTGTTGTGCGGCTGTCGGTTCAGCCAATCGTTAGACTACCGACGATTGCGGTGTCGGTCGTTCTATGAGTTCGACCGGTGGTTACACCGGTTACCACCGAGGAGATACCTGTAACACGTCGTCGTTGTCGTTGTGTTGTTC
**************************************************************************************************.....((((((.............((((((......))))))........))))))...********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
........................................................................................................TCTGGTTGTTGTGCG................................................................................................................................... 15 1 20 2.00 40 39 0 0 0 0 0 1
.....................................................................................................AATTTTGGTTGTTGTGCG................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................TCCGGTTGTTGTGCGGCTGTC............................................................................................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGCAACAAGTCGTCGTTGTCAT.......... 22 3 3 0.33 1 0 0 1 0 0 0 0
........................................................................................................TCCGGTTGTTGTGCGGCT................................................................................................................................ 18 2 10 0.30 3 3 0 0 0 0 0 0
........................................................................................................TCCGGTTGTTGTGCGGCTG............................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0 0
..................................................................................................GGTTATGTTGGTTATTGTGCG................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0
...................................................ATTGTCCTAGTTGTTGTAAAAT................................................................................................................................................................................. 22 3 6 0.17 1 0 0 1 0 0 0 0
.........................................................................................................CTGGTTGTTGTGCGACTG............................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0
........................................................................................................TCCGGTTGTTGTGCGACTGTC............................................................................................................................. 21 3 6 0.17 1 1 0 0 0 0 0 0
..........................................................................................................TGGTTGATGTGCTGCTGTGG............................................................................................................................ 20 3 7 0.14 1 0 0 0 1 0 0 0
........................................................................................................TTTGGTTGTTGTGCGCCA................................................................................................................................ 18 2 9 0.11 1 1 0 0 0 0 0 0
..........................................................................................................TGGTTGTTGTGCGCC................................................................................................................................. 15 1 19 0.11 2 2 0 0 0 0 0 0
........................................................................................................TCCGGTTGTTGTGCGACTGT.............................................................................................................................. 20 3 20 0.10 2 2 0 0 0 0 0 0
.......................................................................................................TTCTGGTTGTTGTGCG................................................................................................................................... 16 1 11 0.09 1 1 0 0 0 0 0 0
..................................................................................................GGTAGTTCCGGTTGTTGTGCG................................................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0 0
........................................................................................................TCCGGTTGTTGTGCGGCTGC.............................................................................................................................. 20 3 11 0.09 1 1 0 0 0 0 0 0
...................................................................................................................TGCGGCTGTCCGTTC........................................................................................................................ 15 1 12 0.08 1 1 0 0 0 0 0 0
..........................................................................................................CGGTTGTTGTGCGACTGT.............................................................................................................................. 18 2 14 0.07 1 1 0 0 0 0 0 0
.....................................................................................................AATTCCGGTTGTTGTGCG................................................................................................................................... 18 2 14 0.07 1 0 0 0 0 1 0 0
..........................................................................................................................GTGGGTTCAGGCAATCGTTG............................................................................................................ 20 3 16 0.06 1 0 0 0 0 0 1 0
..........................................................................................................................................................................TCTAAGAGTTCGACCCG............................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0
..........................................................................................................................................................................GCTCTGAGTTCGAACGGT.............................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................................TTGTGGTTGTTGTGCGCC................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:26357136-26357385 + dsi_1088 GCC-GCAACAGCAGCAGCAGCAG--CAG-CAACTCCATCAAAA---------------------CACTGCAACAGGTAACAGCAACA------------ACAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCGGTTAGCAATCTGATGGCTGCTAACGCCACAGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGG---TGGCT-----------------C--CTCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------AGCAACA------CAACAAG
droSec2 scaffold_4:5870733-5870982 + GCC-GCAACAGCAGCAGCAGCAG--CAG-CAACTCCATCAAAA---------------------CACTGCAACAGGTAACAGCAACA------------ACAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCGGTTAGCAATCTGATGGCTGCTAACGCCACAGCCAGCAAGATACTAAAGCTGGCCACCAATGTGGCCAATGG---TGGCT-----------------C--CTCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------AGCAACA------CAACAAG
dm3 chr3R:27052754-27053000 + GCC-GCAACAGCAGCAGCAGCA------GCAACTCCATCAAAA---------------------CACTGCAACAGGTAACAGCAACA------------ACAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCGGTTAGCAATCTGATGGCTGCTAATGCCACAGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGG---TGGCT-----------------C--CTCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------AGCAGCA------CAACAAG
droEre2 scaffold_4820:927721-927961 - GCC-GCAACAACAGCAGCA---------GCAACTCCATCAAAA---------------------CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCTGTTAGTAATCTGATGGCTGCCAATGCCACAGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGG---TGGCT-----------------C--CACTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------AGCAACA------CAACAAG
droYak3 3R:27989299-27989536 + GCC-GCAACAGCAGCA------------GCAACTCCATCAAAA---------------------CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCGGTTAGCAATCTGATGGCTGCCAATGCTACAGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAACGG---TGGCT-----------------C--CTCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------AGCAACA------CAACAAG
droEug1 scf7180000407010:23626-23866 + ACA-GCAGCAGCA---------------GCAACTCCATCAAAA---------------------CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAACAA-----------------------------------C---ACACCGACAGCCAAGTCGGTTAGCAATCTAATGGCTGCCAATGCCACAGCCAGCAAGATACTCAAGCTGGCCACTAATGTGGCCAACGG---TGGCT-----------------C--CTCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC------AGCA---GCAGTCGCA------CAACAAG
droBia1 scf7180000302113:259874-260117 - GCA-ACAACAGCAGCA------------GCAACTCCATCAGAA---------------------CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCTGTTAGCAATCTAATGGCCGCCAATGCCACAGCCAGCAAGATACTTAAGCTGGCCACCACTGTGGCCAACGG---CGGCG-----------------C--CTCAA-------TGGACATTGTGCA--------GCAGCA-------------------------AC------AGCA---CCAGCAGCA------CAACAAG
droTak1 scf7180000415286:173855-174093 + CCCAGCAACAGCAGCAGCAGCA------GCAACTCCACCAGAA------------CT---C---CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCTGTTAGCAATCTGATGGCCGCCAATGCCACAGCCAGCAAGATACTCAAGCTGGCCACAAATGTGGCCAACGG---AGGCG-----------------C--CTCTA-------TGGA-----------------GCTCCA-------------------------GC---------------AGCAGCA------CAGCAAG
droEle1 scf7180000491194:1061841-1062084 + GCA-GCAACAGCAACAGCAGCA------GCAACTCCATCAGAA---------------------CACTCCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAACAA-----------------------------------C---ACGCCGACAACTAAGTCGGTAAGCAATCTAATGGCTGCCAATGCCACCGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGG---TGGTG--------G------GTC--CACCA-------TAGACATTGTGCA--------GCAGC-------------------------------------------AGCAGCA------CAATAAG
droRho1 scf7180000777206:274391-274634 - GCA-GCAACAGCAGCA------------GCAACTCCATCAGAA---------------------CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAACAA-----------------------------------T---ACGCCGACAGCCAAGTCGGTTAGCAACCTAATGGCTGCCAATGCCACCGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAACGGAGGTGGGT-----------------C--CGCCA-------TGGACATTGTGCA--------GCAGCA-------------------------AC------AG------CAGCAGCT------CAACAAG
droFic1 scf7180000453782:253101-253332 - GCA-GCA---------------------GCCACTCCACCAGAG---------------------CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCGGTTAGCAATCTAATGGCTGCCAATGCCACAGCCAGCAAGATACTTAAGCTGGCCACCAATGTGGCCAATGG---TGGCT-----------------C--CACCA-------TGGACATTGTGCA--------GCAGCA-------------------------AC------AG------CAGCAGCA------CAACAAG
droKik1 scf7180000301923:167961-168255 + GCA-ACACCAGCAACAGCAGCAGCA---GCAGCTCCAACAGAA------------CGGCGG---CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAGCAA-----------CA---ATCACAATAATGGCAACAAC---ACGCCGACTGCCAAGTCGGTTAGCAATTTAATGGCAGCCAATGCAACGGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGG---TGCCT-----------------C--CACAGCAT----TGGACATTGTGCA--------GCAGCA-------------------------ACAATTGCAGCA---GCAGCAGCACAACGGTAGCAAC
droAna3 scaffold_13340:14443167-14443419 + ACA-GCAACAGCAGCAG------------ATCCTGCAGCAGAA------------CGGCGGCAACAGTGCAACAGGTAACAGCAACA------------ACAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------C---CAACCGGCTGCCAAATCGGTAAGCAATCTTATGGCTGCCAATGCAACGGCCAGCAAGATTCTCAAGCTGGCCACCAATGTGGCCAACGG---CGGCT-----------------C--CGCCG-------TCGACATCGTACA--------GCACCA-------------------------GC---------------AG---CTCAATGGCAATAAG
droBip1 scf7180000395971:727028-727271 - GCC-ACAGCAG---------------------ATCCTACAGAA------------CGGCGGCCCCAGTGCAACAGGTAACACCAACA------------ACAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------T---CAACCGGCTGCCAAATCGGTAAGCAATCTTATGGCTGCCAACGCAACGGCCAGCAAGATTCTCAAGCTGGCCACCAATGTGGCCAACGG---CGGCT-----------------C--CGCCG-------TAGACATCGTTCA--------GCATCA-------------------------GC---------------AG---CTCAATGGCAACAAG
dp5 2:78181-78460 - TCC-ACAGCAGCAGCAGCATCA------------GCATCAGAACCACCACCAGAATGGCGG---CTCAGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAATAGCCACA--GCAGCA------ACAGCAATGGGAACAACGCAAAT------CCCAAGACTGTTAGCAACCTAATGGCTGCCAATGCAACGGCCAGTAAGATACTCAAACTCGCCACCAACGTGGCCAACGG---TGGCTCTGTAGTGGCGCC----------C-AA------TGTCGTTGACCAAGTAGTCA--AGC------------------------------------------------------------AA-
droPer2 scaffold_7:2869963-2870239 - TCC-ACAGCAGCAGCAGCAGCA---------------TCAGAACCACCACCAGAATGGCGG---CTCAGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAATAGCCACA--GCAGCA------ACAGCAATGGGAACAACGCAAAT------CCCAAGACTGTTAGCAACCTAATGGCTGCCAATGCAACGGCCAGTAAGATACTCAAACTCGCCACCAACGTGGCCAACGG---TGGCTCTGTAGTGGCGCC----------C-AA------TGTCGTTGACCAAGTAGTCA--AGC------------------------------------------------------------AA-
droWil2 scf2_1100000004921:719137-719439 + GCA-GCAACAGCAGCAGCAGCAG---------CAACATCAAAA------------TGGCAG---CTTAGCAACAGGTAACAACAACA---ACAGCAACAACAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCAATTAAAACCACTAGCAAC-----------------AACAATTGCAACAAT---AATCC------AAAGTCTGTTAGCAATTTAATGGCTGCCAATGCAACGGCCAATAAGATCCTCAAATTGGCCACCAATGTGGCAAATGG---CGTTG---TCGCTG------CTC--CACCGCATGTGGTGGATATTGTTCA--------GCAGCACAAAATCATTGAAAATTCGGTTAAAAC-----------------------------GGCAGT
droVir3 scaffold_13042:988883-989105 - GCA-ACAACAGCAGCAACAACAA--CAA-CAACTTCATGC-AA---------------------CCCATC----AGCAACAACAACAACAACA------ACAAC---------AACAAC-AAGCACA----AT---------TCCATTTCAAACAACAA-----------CAACACAAACAATTAAAACAAATAC---TCGC------------------CTAATTTCATGT---CTCACGCCACAAC-AACAACA-----------ACAACAACTGTTAACTGTAG---CAGCG-----------------C--CT----------GCGACAACA-ACA--------ACAGCA-------------------------GC---------------AGCAACA-----GCAACAA-
droMoj3 scaffold_6473:2597919-2598172 + GCA-GCAGCAGCAGCAGCTGCAG--CAG-CAGTTGCAG-------------------------------CAACA-ACAGCTGCAACA------------ACAACAACTTCAGCAGCAGC-AG-------------------------CAACACCATCACCAACA--GCAGCA------GCAGCAGCAACACCAC-----CATCAACAGCCGCAGCAG-CAACAACATCAGG-TCGGCAGTCAGGCGGCCAACAAAATGCTAATCATACCGA-------AGCCCATTG---AATCG---ATGATG--CCCAGCCCGCCCGA-------CAAGCATCAG----------------------------------------------TTGCAGCAGCAGCAGCAGCA-----ACAACAAC
droGri2 scaffold_2234:219-454 + ACA-GCAACAGCAGCAGCAGAAG--CAA-CAA-------------------------------------CAACA-GCAGCTGCAACA------------GCAACAAATTGAGAAACAACAACAGTCAGCCAATTTGGTTGTTTCCATTG---CCACCGT----AGCGCCGCA------AC-----------------------TGCAACAAGAACAG-CAGCAGCC-AATTGCA----GCGCCACCGC-AGCAACAT---CAA--CAGCAACAAACTTCGCCAGTTG---TGCCACAGCAGCAGC--------------A-------TCAGCAAC-AGCA--------GCAGCA-------------------------AC---------------AGCAGCA-----GCAACAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCC-GCAACAGCAGCAGCAGCAG--CAG-CAACTCCATCAAAA---------------------CACTGCAACAGGTAACAGCAACA------------ACAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCGGTTAGCAATCTGATGGCTGCTAACGCCACAGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGG---TGGCT-----------------C--CTCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------AGCAACA------CAACAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................TGCA--------GCAGCA-------------------------AC---------------AGCAAC..............18204.80960000247200000000000
......................G--CAG-CAACTCCATCAAAA---------------------CACT............................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.................................................................................................................................................................................................................CAAGTCGGTTAGCAATCTGATGGCTG.....................................................................................................................................................................................2611.00100000000000010000
..............................................................................................................................................................................................................AGCCAAGTCGGTTAGCAATCTG............................................................................................................................................................................................2211.00100000001000000000
.......................................................................................................................................A---GTATCCATTAAAACCAACAA-----------------------------------C---ACGCC.....................................................................................................................................................................................................................2711.00100000000100000000
........................................................................................................................................................................................................................GTTAGCAATCTGATGGCT......................................................................................................................................................................................1811.00100000000001000000
.................................................................................................................................................................................................................CAAGTCGGTTAGCAATCTGATGGCTGC....................................................................................................................................................................................2711.00100000001000000000
............................................................................................................................................................................................................................................................................................................................TCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------AG..................2711.00100000001000000000
........................................................................................................AATTTAATGCGCAGC-ACACTCG----GTT..........................................................................................................................................................................................................................................................................................2511.00100000001000000000
..............................................................................................................................................TCCATTAAAACCAACAA-----------------------------------C---ACGCCGAC..................................................................................................................................................................................................................2611.00100010000000000000
............................................................................................................................................................................................................................................................................................................................TCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------AGC.................2811.00100000010000000000
............................................................................................................................................................................................................................................................................................................................TCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------....................2511.00100000000100000000
...........CAGCAGCAGCAG--CAG-CAACTC.............................................................................................................................................................................................................................................................................................................................................................................................21140.07100000000001000000
..................AGCAG--CAG-CAACTCCA...........................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
droSec2
GCC-GCAACAGCAGCAGCAGCAG--CAG-CAACTCCATCAAAA---------------------CACTGCAACAGGTAACAGCAACA------------ACAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCGGTTAGCAATCTGATGGCTGCTAACGCCACAGCCAGCAAGATACTAAAGCTGGCCACCAATGTGGCCAATGG---TGGCT-----------------C--CTCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------AGCAACA------CAACAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................CTGCAACAGGTAACAGCAACA------------.............................................................................................................................................................................................................................................................................................................................2111.0010001
...........................................................................................................................................................................................................................................................CAAGATACTAAAGCTGGCCACCAAT............................................................................................................................................2511.0011000
......AACAGCAGCAGCAGCAG--CAG-CAAC...............................................................................................................................................................................................................................................................................................................................................................................................24200.1020020
....GCAACAGCAGCAGCAGCAG--CA.....................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
dm3
GCC-GCAACAGCAGCAGCAGCA------GCAACTCCATCAAAA---------------------CACTGCAACAGGTAACAGCAACA------------ACAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCGGTTAGCAATCTGATGGCTGCTAATGCCACAGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGG---TGGCT-----------------C--CTCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------AGCAGCA------CAACAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................TTAATGCGCAGC-ACACTCG----GTTTA---GT...................................................................................................................................................................................................................................................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................GACAGCCAAGTCGGTTAGCAATCTGA...........................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................ATCAAAA---------------------CACTGCAACAGGTAACAGCAAC..........................................................................................................................................................................................................................................................................................................................................2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................AGCCAAGTCGGTTAGCAATCTGATGG........................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CCATCAAAA---------------------CACTGCAACAGGTAACA...............................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................ACCAATGTGGCCAATGG---T.............................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GCCAAGTCGGTTAGCAATCTGATGGC.......................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................C--CTCTA-------TGGACATTGTGCA--------....................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TAATGCGCAGC-ACACTCG----GTTTA---GTT..................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................CAGCCAAGTCGGTTAGCAATCTGAT..........................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................CCATCAAAA---------------------CACTGCAACAGGTAAC................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................ACAGCCAAGTCGGTTAGCAATCTGA...........................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CAGCCAAGTCGGTTAGCAATCTGA...........................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................CAAGTCGGTTAGCAATCTGATGGC.......................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AAAA---------------------CACTGCAACAGGTAACAGC.............................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TGTGGCCAATGG---TGGCT-----------------C--CTCTA-------T........................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................CAAGTCGGTTAGCAATCTGATGG........................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CAAAA---------------------CACTGCAACAGGTAAC................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CAACTCCATCAAAA---------------------CACTGCAAC.......................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGCAGCAGCA------GCAACTCCAT..........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................GCAACTCCATCAAAA---------------------CACT............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TCGGTTAGCAATCTGATGGCTGC....................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................C--CTCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------A...................2811.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCAACTCCATCAAAA---------------------CACTGCAACAGA....................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CTCCATCAAAA---------------------CACTGCAACAGGTAAC................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CAAAA---------------------CACTGCAACAGGTAACAGC.............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................AA-----------------------------------C---ACGCCGACAGCCAAGTCGGTTAGC..................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TCCATTAAAACCAACAA-----------------------------------C---ACGCCGAC..................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGCA------GCAACTCCATCAAAA---------------------CACTGCA.........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................GTGGCCAATGG---TGGCT-----------------C--CT...................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................AATGG---TGGCT-----------------C--CTCTA-------TGG......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CAATTTAATGCGCAGC-ACACTC..................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CAACTCCATCAAAA---------------------CACTGCAACA......................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TAATGCGCAGC-ACACTCG----GTTTA---G....................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................................................................................................................................................................................GGCT-----------------C--CTCTA-------TGGACATTGTGCA--------GC..................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CAGC-ACACTCG----GTTTA---GTATCCA..............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
........................................................................................................AATTTAATGCGCAGC-ACACTCG----GTT..........................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CAACTCCATCAAAA---------------------CACTGCAACAGGTA..................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TAATGCGCAGC-ACACTCG----GTTTA---GTA..................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................................TAATGCCACAGCCAGCAAGATACT............................................................................................................................................................2411.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................C--CTCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------AG..................2911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................GACATTGTGCA--------GCAGCA-------------------------AC---------------AGCAGC..............2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GCAACAGGTAACAGCAACA------------ACAA.........................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................TCGGTTAGCAATCTGATGGCTGCT...................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CCATCAAAA---------------------CACTGCAACAGGTAACAG..............................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................GCAGCA-------------------------AC---------------AGCAGCA------CAACAA.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................AGTCGGTTAGCAATCTGATGGCTGCTA..................................................................................................................................................................................2711.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TA---GTATCCATTAAAACCAACAA-----------------------------------C---ACGCC.....................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................GC-ACACTCG----GTTTA---GTATCCA..............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CCATCAAAA---------------------CACTGCAACAGGTAACAGCA............................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCAACTCCATCAAAA---------------------CACTGC..........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................ATTAAAACCAACAA-----------------------------------C---ACGCC.....................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................TGCGCAGC-ACACTCG----GTTTA---GTAT.................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......ACAGCAGCAGCAGCA------GCAACTCCATC.........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GCAGC-ACACTCG----GTTTA---GTATCC...............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CATTGTGCA--------GCAGCA-------------------------AC---------------AGCA................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAGCA------GCAACTCCATCAAAA---------------------CACTGCA.........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................A------GCAACTCCATCAAAA---------------------CACTGCAACAG.....................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................ACGCCGACAGCCAAGTCGGTTAGC..................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................GACAGCCAAGTCGGTTAGCAATCTGATGGC.......................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TCCATCAAAA---------------------CACTGCAACAGGTA..................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTTAATGCGCAGC-ACACTCG----GTTTA---G....................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CAGCCAAGTCGGTTAGCAATCTGATGG........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................AAA---------------------CACTGCAACAGGTAACAGCA............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ACTCCATCAAAA---------------------CACTGCAACA......................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TACTCAAGCTGGCCACCAATGT..........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TA-------TGGACATTGTGCA--------GCAGCA-------------------------A....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................CAGCA------GCAACTCCATCAAAA---------------------CACT............................................................................................................................................................................................................................................................................................................................................................2411.0010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AACTCCATCAAAA---------------------CACTGCAAC.......................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CCAAGTCGGTTAGCAATCTGATGGC.......................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................CAAGTCGGTTAGCAATCTGATGGCTGC....................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CAAAA---------------------CACTGCAACAGGTAACA...............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TAATGCGCAGC-ACACTCG----GTTTA---GT...................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TTA---GTATCCATTAAAACCAACAA-----------------------------------C---AC........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................CAGGTAACAGCAACA------------ACAA.........................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................GTAACAGCAACA------------ACAACA.......................................................................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CC-GCAACAGCAGCAGCAGCA------G...................................................................................................................................................................................................................................................................................................................................................................................................21150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................GTGCA--------GCAGCA-------------------------AC---------------AGCAGC..............19110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......AACAGCAGCAGCAGCA------GCAA................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CAACAGCAGCAGCAGCA------GCAA................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......AACAGCAGCAGCAGCA------GCAAC...............................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..C-GCAACAGCAGCAGCAGCA------....................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CAACAGCAGCAGCAGCA------GCA.................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......AACAGCAGCAGCAGCA------GC..................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACAGCAGCAGCAGCA------GCAAC...............................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..C-GCAACAGCAGCAGCAGCA------GCA.................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCC-GCAACAACAGCAGCA---------GCAACTCCATCAAAA---------------------CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCTGTTAGTAATCTGATGGCTGCCAATGCCACAGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGG---TGGCT-----------------C--CACTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------AGCAACA------CAACAAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................GCAAGATACTCAAGCTGGCCACCAATGC..........................................................................................................................................2811.0010100000
...........................................................................................................................................................................................................................................................................................................................CACTA-------TGGACATTGTGCA--------GC..................................................................2011.0010000100
.....................................TCAAAA---------------------CACTGCAACAGG....................................................................................................................................................................................................................................................................................................................................................1811.0010100000
..................................................................................................................................................................................................................................................................................................................................................CA--------GCAGCA-------------------------AC---------------AGCAACA------CAA....2030.3310000100
droYak3
GCC-GCAACAGCAGCA------------GCAACTCCATCAAAA---------------------CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCGGTTAGCAATCTGATGGCTGCCAATGCTACAGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAACGG---TGGCT-----------------C--CTCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC---------------AGCAACA------CAACAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................GGCT-----------------C--CTCTA-------TGGACATTGTGCA--------....................................................................2311.00101000000000
..........................................................................................................TTTAATGCGCAGC-ACACTCG----GTT..........................................................................................................................................................................................................................................................................................2311.00100000010000
....................................................................................................................................................................................................................................................................CAAGCTGGCCACCAATGTGGC.......................................................................................................................................2111.00101000000000
......AACAGCAGCA------------GCAACTCCATC.........................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.................................................................................................................................................................................................................CAAGTCGGTTAGCAATCTGATGGCTGC....................................................................................................................................................................................2711.00100000010000
................................CTCCATCAAAA---------------------CACTGCAACAG.....................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.....................................................................................................................................................AAACCAACAA-----------------------------------C---ACGCCGAC..................................................................................................................................................................................................................1911.00110000000000
...............................................................................................................................................................................................................................................................................................................................................GTGCA--------GCAGCA-------------------------AC---------------AGCAACA------.......2070.14101000000000
droEug1
ACA-GCAGCAGCA---------------GCAACTCCATCAAAA---------------------CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAACAA-----------------------------------C---ACACCGACAGCCAAGTCGGTTAGCAATCTAATGGCTGCCAATGCCACAGCCAGCAAGATACTCAAGCTGGCCACTAATGTGGCCAACGG---TGGCT-----------------C--CTCTA-------TGGACATTGTGCA--------GCAGCA-------------------------AC------AGCA---GCAGTCGCA------CAACAAGSizeHit CountTotal NormTotal
No Reads
droBia1
GCA-ACAACAGCAGCA------------GCAACTCCATCAGAA---------------------CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCTGTTAGCAATCTAATGGCCGCCAATGCCACAGCCAGCAAGATACTTAAGCTGGCCACCACTGTGGCCAACGG---CGGCG-----------------C--CTCAA-------TGGACATTGTGCA--------GCAGCA-------------------------AC------AGCA---CCAGCAGCA------CAACAAGSizeHit CountTotal NormTotal
No Reads
droTak1
CCCAGCAACAGCAGCAGCAGCA------GCAACTCCACCAGAA------------CT---C---CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCTGTTAGCAATCTGATGGCCGCCAATGCCACAGCCAGCAAGATACTCAAGCTGGCCACAAATGTGGCCAACGG---AGGCG-----------------C--CTCTA-------TGGA-----------------GCTCCA-------------------------GC---------------AGCAGCA------CAGCAAGSizeHit CountTotal NormTotal
No Reads
droEle1
GCA-GCAACAGCAACAGCAGCA------GCAACTCCATCAGAA---------------------CACTCCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAACAA-----------------------------------C---ACGCCGACAACTAAGTCGGTAAGCAATCTAATGGCTGCCAATGCCACCGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGG---TGGTG--------G------GTC--CACCA-------TAGACATTGTGCA--------GCAGC-------------------------------------------AGCAGCA------CAATAAGSizeHit CountTotal NormTotal
No Reads
droRho1
GCA-GCAACAGCAGCA------------GCAACTCCATCAGAA---------------------CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAACAA-----------------------------------T---ACGCCGACAGCCAAGTCGGTTAGCAACCTAATGGCTGCCAATGCCACCGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAACGGAGGTGGGT-----------------C--CGCCA-------TGGACATTGTGCA--------GCAGCA-------------------------AC------AG------CAGCAGCT------CAACAAGSizeHit CountTotal NormTotal
No Reads
droFic1
GCA-GCA---------------------GCCACTCCACCAGAG---------------------CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAACAA-----------------------------------C---ACGCCGACAGCCAAGTCGGTTAGCAATCTAATGGCTGCCAATGCCACAGCCAGCAAGATACTTAAGCTGGCCACCAATGTGGCCAATGG---TGGCT-----------------C--CACCA-------TGGACATTGTGCA--------GCAGCA-------------------------AC------AG------CAGCAGCA------CAACAAGSizeHit CountTotal NormTotal
No Reads
droKik1
GCA-ACACCAGCAACAGCAGCAGCA---GCAGCTCCAACAGAA------------CGGCGG---CACTGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAGCAA-----------CA---ATCACAATAATGGCAACAAC---ACGCCGACTGCCAAGTCGGTTAGCAATTTAATGGCAGCCAATGCAACGGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGG---TGCCT-----------------C--CACAGCAT----TGGACATTGTGCA--------GCAGCA-------------------------ACAATTGCAGCA---GCAGCAGCACAACGGTAGCAACSizeHit CountTotal NormTotal
No Reads
droAna3
ACA-GCAACAGCAGCAG------------ATCCTGCAGCAGAA------------CGGCGGCAACAGTGCAACAGGTAACAGCAACA------------ACAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------C---CAACCGGCTGCCAAATCGGTAAGCAATCTTATGGCTGCCAATGCAACGGCCAGCAAGATTCTCAAGCTGGCCACCAATGTGGCCAACGG---CGGCT-----------------C--CGCCG-------TCGACATCGTACA--------GCACCA-------------------------GC---------------AG---CTCAATGGCAATAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................CG-------TCGACATCGTACA--------GCACCA-------------------------G....................................2211.001100000
.....................................................................................................AACAATTTAATGCGCAGC-AC......................................................................................................................................................................................................................................................................................................2011.001010000
.....................................GCAGAA------------CGGCGGCAACAGTGC..........................................................................................................................................................................................................................................................................................................................................................2111.001100000
................G------------ATCCTGCAGCAGAA------------CGGCGGCAAC...............................................................................................................................................................................................................................................................................................................................................................2511.001010000
...............................................................................................................................................................................................................................ATCTTATGGCTGCCAATGCA.............................................................................................................................................................................2011.001100000
......................................................................................................................C-ACACTCG----GTTTA---GTATCC...............................................................................................................................................................................................................................................................................1911.001000001
........................................................................................................AATTTAATGCGCAGC-ACACTCG----.............................................................................................................................................................................................................................................................................................2211.001010000
.........................................AA------------CGGCGGCAACAGTGCAACAGGTA..................................................................................................................................................................................................................................................................................................................................................2511.001100000
............................................................................................................................................TATCCATTAAAACCAACAA-----------------------------------C---CAA.......................................................................................................................................................................................................................2311.001010000
............................................................................................................................................................................................................................................................................................................................................ATCGTACA--------GCACCA-------------------------GC---------------AG---CTC............2111.001010000
...................................................................................................................................................................................................................................................ACGGCCAGCAAGATTCTCA..........................................................................................................................................................1911.001000001
........................................GAA------------CGGCGGCAACAGTGC..........................................................................................................................................................................................................................................................................................................................................................1811.001100000
droBip1
GCC-ACAGCAG---------------------ATCCTACAGAA------------CGGCGGCCCCAGTGCAACAGGTAACACCAACA------------ACAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAACCAACAA-----------------------------------T---CAACCGGCTGCCAAATCGGTAAGCAATCTTATGGCTGCCAACGCAACGGCCAGCAAGATTCTCAAGCTGGCCACCAATGTGGCCAACGG---CGGCT-----------------C--CGCCG-------TAGACATCGTTCA--------GCATCA-------------------------GC---------------AG---CTCAATGGCAACAAGSizeHit CountTotal NormTotal
No Reads
dp5
TCC-ACAGCAGCAGCAGCATCA------------GCATCAGAACCACCACCAGAATGGCGG---CTCAGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAATAGCCACA--GCAGCA------ACAGCAATGGGAACAACGCAAAT------CCCAAGACTGTTAGCAACCTAATGGCTGCCAATGCAACGGCCAGTAAGATACTCAAACTCGCCACCAACGTGGCCAACGG---TGGCTCTGTAGTGGCGCC----------C-AA------TGTCGTTGACCAAGTAGTCA--AGC------------------------------------------------------------AA-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................AACGG---TGGCTCTGTAGTGGC...............................................................................................................2012.0020000000002
.........................................................................................................................................................CAATAGCCACA--GCAGCA------ACA...........................................................................................................................................................................................................................................2012.0020200000000
............................................................................................................................................................................................GAACAACGCAAAT------CCCAAGAC.........................................................................................................................................................................................................2111.0010010000000
..............................................................................................................................................................GCCACA--GCAGCA------ACAGCAATG.....................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................CCCAAGACTGTTAGCAACCTAAT..........................................................................................................................................................................................2311.0010100000000
......................................................................................................................................................................GCAGCA------ACAGCAATGGGAAC................................................................................................................................................................................................................................2011.0010000010000
.................CATCA------------GCATCAGAACCACCACCA............................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...........................................................GG---CTCAGCAACAGGTAACAG..............................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............AGCATCA------------GCATCAGAACCACC................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............GCAGCATCA------------GCATCAGAACCAC.................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
......AGCAGCAGCAGCATCA------------GCATCAGAACCA..................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
....................CA------------GCATCAGAACCACCACCAGAAT........................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
................................................................................................................................................................................................................................................................TACTCAAACTCGCCACCAACGT..........................................................................................................................................2211.0010100000000
..............................................................................................................................................................................................................................AACCTAATGGCTGCCAATGCAAC...........................................................................................................................................................................2311.0010100000000
...........................................................................................................TTAATGCGCAGC-ACACTCG----GTT..........................................................................................................................................................................................................................................................................................2211.0010000100000
.......................................................................................................................................................................CAGCA------ACAGCAATGGGAACAAC.............................................................................................................................................................................................................................2211.0010000001000
...............AGCATCA------------GCATCAGAACCACCAC..............................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.CC-ACAGCAGCAGCAGCATCA------------..............................................................................................................................................................................................................................................................................................................................................................................................2050.2010000001000
....ACAGCAGCAGCAGCATCA------------GCATC.........................................................................................................................................................................................................................................................................................................................................................................................2360.1710001000000
droPer2
TCC-ACAGCAGCAGCAGCAGCA---------------TCAGAACCACCACCAGAATGGCGG---CTCAGCAACAGGTAACAGCAA---------------CAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCCATTAAAGCCAATAGCCACA--GCAGCA------ACAGCAATGGGAACAACGCAAAT------CCCAAGACTGTTAGCAACCTAATGGCTGCCAATGCAACGGCCAGTAAGATACTCAAACTCGCCACCAACGTGGCCAACGG---TGGCTCTGTAGTGGCGCC----------C-AA------TGTCGTTGACCAAGTAGTCA--AGC------------------------------------------------------------AA-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................A---------------TCAGAACCACCACCAGAAT........................................................................................................................................................................................................................................................................................................................................................................2013.003300000
..........................................ACCACCACCAGAATGGCGG---CT..............................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................................................................................................................................................................GCAGCA------ACAGCAATGGGAAC................................................................................................................................................................................................................................2011.001000001
......................................................................................................................................................................................................AAT------CCCAAGACTGTTAGCAAC...............................................................................................................................................................................................2111.001100000
........................................................................................................................................................................................................T------CCCAAGACTGTTAGCAAC...............................................................................................................................................................................................1911.001100000
droWil2
GCA-GCAACAGCAGCAGCAGCAG---------CAACATCAAAA------------TGGCAG---CTTAGCAACAGGTAACAACAACA---ACAGCAACAACAACAATTTAATGCGCAGC-ACACTCG----GTTTA---GTATCAATTAAAACCACTAGCAAC-----------------AACAATTGCAACAAT---AATCC------AAAGTCTGTTAGCAATTTAATGGCTGCCAATGCAACGGCCAATAAGATCCTCAAATTGGCCACCAATGTGGCAAATGG---CGTTG---TCGCTG------CTC--CACCGCATGTGGTGGATATTGTTCA--------GCAGCACAAAATCATTGAAAATTCGGTTAAAAC-----------------------------GGCAGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................GCGCAGC-ACACTCG----GTTTA---G....................................................................................................................................................................................................................................................................................2011.00100001
..........................................................................................................................................................................................................................................................ATAAGATCCTCAAATTGGC...................................................................................................................................................1911.00110000
.......ACAGCAGCAGCAGCAG---------CAAC............................................................................................................................................................................................................................................................................................................................................................................................20200.10202000
GCA-GCAACAGCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
....GCAACAGCAGCAGCAGCAG---------C...............................................................................................................................................................................................................................................................................................................................................................................................20200.05100001
droVir3
GCA-ACAACAGCAGCAACAACAA--CAA-CAACTTCATGC-AA---------------------CCCATC----AGCAACAACAACAACAACA------ACAAC---------AACAAC-AAGCACA----AT---------TCCATTTCAAACAACAA-----------CAACACAAACAATTAAAACAAATAC---TCGC------------------CTAATTTCATGT---CTCACGCCACAAC-AACAACA-----------ACAACAACTGTTAACTGTAG---CAGCG-----------------C--CT----------GCGACAACA-ACA--------ACAGCA-------------------------GC---------------AGCAACA-----GCAACAA-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................AACTGTAG---CAGCG-----------------C--CT----------GCGG.....................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TGTTAACTGTAG---CAGCG-----------------C--CT----------GCGA.....................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CAAC-AAGCACA----AT---------TCCATTTCAAA.......................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................ACA------ACAAC---------AACAAC-AAGCACA----AT---------TCCAT.............................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................CAAACAATTAAAACAAATAC---..........................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................ACAACAACA------ACAAC---------AACAAC-AAGCACA----AT---------..................................................................................................................................................................................................................................................................................2930.331000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................CGACAACA-ACA--------ACAGCA-------------------------GC---------------AGC.................2270.141000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................AACAACA-----------ACAACAACTGTT.........................................................................................................................................19170.061001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................CCACAAC-AACAACA-----------ACAACAAC.............................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
........CAGCAGCAACAACAA--CAA-CAACT..............................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................A-ACA--------ACAGCA-------------------------GC---------------AGCAACA-----GCA.....22200.051000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................A--------ACAGCA-------------------------GC---------------AGCAACA-----GCAAC...21200.051000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CAACA-ACA--------ACAGCA-------------------------GC---------------AGCA................20200.051000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ACA-ACA--------ACAGCA-------------------------GC---------------AGCA................18200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCA-GCAGCAGCAGCAGCTGCAG--CAG-CAGTTGCAG-------------------------------CAACA-ACAGCTGCAACA------------ACAACAACTTCAGCAGCAGC-AG-------------------------CAACACCATCACCAACA--GCAGCA------GCAGCAGCAACACCAC-----CATCAACAGCCGCAGCAG-CAACAACATCAGG-TCGGCAGTCAGGCGGCCAACAAAATGCTAATCATACCGA-------AGCCCATTG---AATCG---ATGATG--CCCAGCCCGCCCGA-------CAAGCATCAG----------------------------------------------TTGCAGCAGCAGCAGCAGCA-----ACAACAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................ATCG---ATGATG--CCCAGCCCG.....................................................................................................1911.001000010
......................................................................................................................................................................................................................................................................................................G---ATGATG--CCCAGCCCGCCCGA-------CA.......................................................................................2311.001000010
....................................................................................................................................................................................................................................................................................................TCG---ATGATG--CCCAGCCCGCCCGA-------CAAG.....................................................................................2711.001100000
........................................................................................................................................................CCATCACCAACA--GCAGCA------GC............................................................................................................................................................................................................................................2030.331001000
.................................................................................................................AGCAGC-AG-------------------------CAACACCATCACCA...............................................................................................................................................................................................................................................................2230.331000010
.........................................................................................................................................................................GCA------GCAGCAGCAACACCAC-----C........................................................................................................................................................................................................................2070.141000001
...........................................................................................................................................................................................................AACAGCCGCAGCAG-CAACA.................................................................................................................................................................................................19150.132010010
..................................................................................................................................................................................GCAGCAGCAACACCAC-----CA.......................................................................................................................................................................................................................18110.091100000
...........................................................................................................................................................TCACCAACA--GCAGCA------GCAGC.........................................................................................................................................................................................................................................20130.081001000
..........................................................................................................................................................................................................CAACAGCCGCAGCAG-CAAC..................................................................................................................................................................................................19150.071100000
....GCAGCAGCAGCAGCTGCAG--CA.....................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
.........AGCAGCAGCTGCAG--CAG-CAG................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
............................................................................................................................................................CACCAACA--GCAGCA------GCAGCA........................................................................................................................................................................................................................................20200.051100000
droGri2
ACA-GCAACAGCAGCAGCAGAAG--CAA-CAA-------------------------------------CAACA-GCAGCTGCAACA------------GCAACAAATTGAGAAACAACAACAGTCAGCCAATTTGGTTGTTTCCATTG---CCACCGT----AGCGCCGCA------AC-----------------------TGCAACAAGAACAG-CAGCAGCC-AATTGCA----GCGCCACCGC-AGCAACAT---CAA--CAGCAACAAACTTCGCCAGTTG---TGCCACAGCAGCAGC--------------A-------TCAGCAAC-AGCA--------GCAGCA-------------------------AC---------------AGCAGCA-----GCAACAGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................ACAGTCAGCCAATTTGGTT.....................................................................................................................................................................................................................................................................................1920.50110

Generated: 05/19/2015 at 03:14 AM