ID:

dsi_10869

 Coordinate:

2l:19106551-19106700 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.3 -26.8 -26.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCTCTCACGCCTTTCTGCTCTCTACTCTCTCGATTTAAAACTTGTAGGACTTGTTTCTTGAGCTTTTTTTGCGAAAACATAAAAACCGGTAAATTTTTTTTTCGAAACTGCAGGCAGAGAAAAGAGAGCGAGCTGTGTTGTTCCTGTATTGGCATTTTTTACCTTAACCATATTTTTCACACACTTTGCTTTCCTTACAGTTTTCTAAACACACACACATACAGAAACGAGAAGAGCCAACGAACTCGCA
**************************************************...((((((..((((......((((((...(((((........))))))))))).......)))).)))))).(((((((((.((((.((.....((((.((...............))))))....)))))).))))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
..................................TTAAAACTTGTAGGACTTGT.................................................................................................................................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CATACAGAAACGAGAAGAGCCAACGAAC..... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0
.............................................................................................................................................TCCTGTATTGTCATTTTTTACCTTAACCA................................................................................ 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................AAAACTTGTAGGACTTGTT................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................CATACAGAAACGAGAAGAGCCAACGAA...... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................CGAGCTGTGTTGTTCCTGTATTGGCATT.............................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................TCTAAACACACACACATACAGAAACGAGA.................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................AGAGAGCGAGCTGTGTTGTT............................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.........................TCTCTCGATTTAAAACTTGTAGGACT....................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................ACGAGAAGAGCCAACGAACTC... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACGAGAAGAGCCAAC......... 15 0 5 0.20 1 0 0 0 0 1 0 0 0 0
.....................................................GATCTTGAGCTTTTTCTGCGA................................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0
........................................................................................................................AATGAGAGCGAGCTTTGTGG.............................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 1
................................TTTTTAAAATTGTAGGACTTG..................................................................................................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................CCTGAACCATATTTTT......................................................................... 16 1 12 0.08 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................CCTGAACCATATTTT.......................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 0 1 0
............................................................................................................................AGAGCGAGCAGTGGTGTGC........................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
............................................TGGGACTTGCTCCTTGAGC........................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CGAGAGTGCGGAAAGACGAGAGATGAGAGAGCTAAATTTTGAACATCCTGAACAAAGAACTCGAAAAAAACGCTTTTGTATTTTTGGCCATTTAAAAAAAAAGCTTTGACGTCCGTCTCTTTTCTCTCGCTCGACACAACAAGGACATAACCGTAAAAAATGGAATTGGTATAAAAAGTGTGTGAAACGAAAGGAATGTCAAAAGATTTGTGTGTGTGTATGTCTTTGCTCTTCTCGGTTGCTTGAGCGT
**************************************************...((((((..((((......((((((...(((((........))))))))))).......)))).)))))).(((((((((.((((.((.....((((.((...............))))))....)))))).))))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR902009
testis
..............................................................................................................................................GGTCATAACCGTTAAAGATGGAATT................................................................................... 25 3 1 2.00 2 2 0 0 0 0
..............................................................................................................................................GGTCATAACCGTTAAAGATGGAAT.................................................................................... 24 3 1 2.00 2 2 0 0 0 0
...........................................................................................TTAAAAAAAAAGCTTTGAC............................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0
................................................................................................................CCGTCTCTTTTCTCTCGCTGGAC................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................................................................................................................................................................................AGGGAGTGTATGTCTTTGCT.................... 20 3 10 0.10 1 0 1 0 0 0
...............................................................................................................................................................................................AGGAATGTCACAAGCCTTG........................................ 19 3 10 0.10 1 0 1 0 0 0
..........................................................................................................................................................................................................AAGAGTTGTGCGTGTGTAT............................. 19 2 11 0.09 1 1 0 0 0 0
..........................................................................................................................................................AAAAAAGGGAGTTGGTATACA........................................................................... 21 3 11 0.09 1 0 0 0 0 1
.................................................................................................................................................................GGAGTTGGTATACAAAG........................................................................ 17 2 13 0.08 1 0 0 0 1 0
.............................................................CGAAGAACACGCTTTTGT........................................................................................................................................................................... 18 2 14 0.07 1 0 0 0 1 0
.......................................................................................................................................................................................................................................TTCTCGGTAGCTCGAGC.. 17 2 15 0.07 1 0 0 0 1 0
...........................................................................................................................................................AAAAAAGGAGTTGGTATA............................................................................. 18 2 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:19106501-19106750 - dsi_10869 GCTCTCACGCCTT-TCT-G----CTCTCT-----------A------CTCTCT-------CGA--TTT-----AAAACTTGTAGGACTTGTTT---CTT----GAGCTT-------------------TT--TTTGCG--------AAA-ACA----TAAAAACCGGTAAATTTT------TT-TTTCGAAACT---G---CAGGCA---GAGA-AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GT---GTTGTTCCTGTATTGG-----------------------------------CATTT------TTT-ACC-TTAACCATA-TTTTTCACACACTTTGCTTTCCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---CG--CA---------
droSec2 scaffold_7:3186053-3186304 - GCTCTCACGCCTG-TCT-G----CTCTCT-----------A------CTCTCT-------CGA--TTT-----AAAACTTGTAGGACTTGTTT---CTT----GAGCTT-------------------TT--TTTGCG--------AAA-ACA----TAAAAACCGGTAAATTTT------TT--TTCGAAACT---G---CAGGCA---GAGA-AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GTGTTGTTGTTCCTGTATTGG-----------------------------------CATTT------TTT-ACC-TTAACCATA-TTTTTCACACACTTTGCTTTCCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---CG--CA---------
dm3 chr2L:19571718-19571969 - GCTCTCACGCCTTTTCT-G----CTCTCT-----------C------CTCTCT-------CGA--TTT-----AAAACTTGTAGGACTTGTTT---CTT----GAGCTT-------------------T---TTTGCG--------AAA-ACA----TAAAAACCGGTAAATTTT------TT--TTCGAAACT---G---CAGGCA---GAGA-AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GTGTTGTTGTTCCTGTATTGG-----------------------------------CATTT------TTT-ACC-TTAACCATA-TTTTTCACACACTTTGCTTTCCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---CG--CA---------
droEre2 scaffold_4845:4717849-4718110 + GTTCTCACGCCTT-TTT-G----CTCTCTCT-----C--TC------TTCTCT-------TGA--TTT-----AAAACTTGTAGGACTTGTTT---CTT----GAGCTT-------------------T---TTTGCG--------AAA-ACA----TAAAAACCGGTAAATTTT------T---TTCGAAACT---G---CAAGCA---GAGA-AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GTGTTGTTGTTCCTGTATTGG-----------------------------------CATTTTTTTTTTTT-ACC-TTAACCATA-TTTTTCACACACTTTGCTTTCCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAAA-------A-----------------ACGAGAAGAGCCAACGAACT---CGTGCA---------
droYak3 2R:6068695-6068970 - GCTCTCACGCCTA-TTT-G----CTCTCT-----------C------CTCTCT-------TGA--TTT-----AAAACTTGTAGGACTTGATT---CTT----TAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCA--------AAA-ACA----TAAAAACCGGTAAATTTT------TT--TTTGAAACT---G---CAAGCA---GAGA-AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GTGTTGTTGTTCCTGTATTGG-----------------------------------CATTTT-T--TTTT-ACC-TTAACCATA-TTTTTCACACACTTTGCTTTCCTTACAGTTTTCTAAACACACAC---------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---CGTGCA---------
droEug1 scf7180000409752:569533-569796 - GCTCACACGCCTT-ATT-G----CTCTCTCT-----T--T-TTAATTCTCTCA-------TGA--AAT-----AAAACTTGTAGGACTTGTTT---CTT----GAGCTT-------------------T----TTGCA--AACGCAAAA-ACA----TAAAAACCGGTACATTCT------T------TAAACT---G---CAAGCT---GAAA-AA-----A-------------GAGAGC----GT--GCT-------------------------------------------------------GTG-TGTTGTTCCTGTATTGG-----------------------------------TTTTTT-TTGTTTT-ACT-T-TACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACT----C-AA-A-----------------ACGAGAAGAGCCAACGAACT---CG---A---------
droBia1 scf7180000302408:483840-484117 - GCTCTCACGCCTG-TTT-G----CTCTCTCT-----CTCTCT-----CTCTCTCGCTCA-TAA--TAT-----AAAACTTGTAGGACTTGTTT---TTT----GAGCTT-------------------T---TTTGCA--------AAA-ACA----T---AACCGGTACATTCTTCTTTTTCTTTTTCAAATT---G---CAAGCT---GAGA-AA-----A-----------GAGAGAGC----GA--GCT-------------------------------------------------------GTG-TGTTGTTCCTGTATTGG-----------------------------------AATTTG-TTGTTTT-ACTTTTTACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---CGTGCA---------
droTak1 scf7180000415115:945513-945779 + GCTCTCACGCCTT-AAT-G----CTCTCCCTGCTGCC--TCTCCAGTCTCTCA-------TGA--TAT-----AAAACTAGTAGGACTTGTTT---TTT----GAGCTT-------------------T----TTGCA--------AAA-ACA----TAAAAACCGGTACATTTT------TT-TTTCGAAATT---G---CAAGCT---GAGA-AA-----A---------------GAGC----GA--GCT-------------------------------------------------------GT---GTTGTTCCTGTATTGG-----------------------------------AATTTT-TTGTTTT-AC--TTAACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---CGTGCA---------
droEle1 scf7180000491046:3392524-3392788 + GCTCTCACGCCTT-TTT-G----CCCTCTTC-C--TC--TCTTCA--CTCTCT-------TGA--AAT-----AAAACTTGTAGGACTTGTTT---TAT----GAGCTT-------------------T----TTGCA--ACCGC-AAA-ACA----TAAAAACCGGTACATTTT------TTTTTTTGAAACT---G---CAAGCT---GAGA-AA-----A-----------GAGAGAGC----GA--G------------------------------------------------------------TTGTTGTTCCTGTGTAGG-----------------------------------AATTT-------TT-ACT-TAAACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------C-----------------TCGGAAAGAGCCAACGAACT---CGTGCA---------
droRho1 scf7180000779863:43264-43520 - GCTCTCACGCCTT-TTT-G----GCCTCTCC----------------CTCTCT-------GGA--AAT-----AAAACTTGTAGGACTTGTTT---TAT----GAGCTT-------------------T----TTGCA--AACGC-AAA-ACA----TAAAAACCGGTAGATTTT------TT--TTTTAAACT---G---CAAGCT---AAGA-AA-----A-----------GAGAGAGC----GA--GCG-------------------------------------------------------G--TTGTTGTTCCTGTGTAGG-----------------------------------AATTT-------TT-ACT-TAAACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AA--ACAGA-------C-----------------ACGGGAAGAGCCAACGAACT---CGTGCA---------
droFic1 scf7180000454003:4231-4480 + ACTCTT------------------CCTCT-----------C------CTCTCT----TA-TAG--TAT-----GAAACTTGTAGGACTTGTTT---TTTCGGAGAGCTT-------------------T----TTGCA--AACGCAAAA-ACA----TAAAAACCGGTACATTTC------T----TTGAAACT---G---CAAGCT---GAGA-AA-----A-----------GAGAGAGC----GA--GCT-------------------------------------------------------GT---GTTGTTCCTGTGTTGG-----------------------------------CATTT------TTTCACT-TTAACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------C-----------------ACGAGAAGAGCCAACGAACT---CGTGCA---------
droKik1 scf7180000302382:753620-753891 + GCTCTCACGCCTT-TTTCGTTCGGC----------------------CTCTC---------AG--TGG----CGGAACTTGTAGGACTTGTTTTTTTTT----GCGCTT-------------------T----TTGCA--AACGC-GAA-TCA----TACAAACCGGTACGTTTT------------TGAAAAT---G---CAAGCC---GAAGAAA-TG--A-------------GAGAGCGTGAGA--GTTGGGT---------------------------------TGC--------TAGCAT-AAACTGTTTCTCCTGTGTTGG-----------------------------------AATTT--------T-ACT-TTAACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACACA-------C-----------------ACGA-AAGAGCCAACGAACT---CGTGCA---------
droAna3 scaffold_12916:12011798-12012083 + TT------------TCT-G----CTCTCCCT------------------C-CA-------TAA--TGT-----AAAACTTGTGGGACTTGTTT----TT----GCACTT-------------------T----TTGCA--AATGC-GAA-TCA----TAAAAACCGGTACATTTT------------TGAAAAT---G---CACGCTGCAGAGA-GAGC---GCATATAAGCCAGAGA--GA----GAGTGC--GTT---------------------------------TGCGTTTATTGTTGGAG-GAGCTCTTGTTCGTGTGCCGG-----------------------------------AATTT--------T-TCT-TTAACCACA-TTTTTCACACAC--TGCTTTTCTTACAGTTTTCTAAACACACATACA-----------------------------CACACACACACACACACTCACGA--------------------GAGAAGAGCCAACGAACT---CGTGCA---------
droBip1 scf7180000396769:360411-360679 + TCTT-------------------CTCTCT-----------C------C-CTCT------TTAA--TGT-----AAAACTTGTGGGACTTGTTT----TT----GCACTT-------------------T----TTGCG--AATGC-GAA-TCA----TAAAAACCGGTACATTTT------------TGAAAAT---G---CACGCTGAAGAGA-GAG-----CATGCCAGCCAGAGA--GA----GAGTGC--GTT----------------------------------------ATAGTTCGAG----------CTCCTGT--------C----------------CTGTTTGTGTGCCGGAATTT--------T-TCT-TTAACCACA-TTTTTCACACAC--TGCTTTTCTTACAGTTTTCTAAACACACATAC-------------------------------------AC--ACACACTCACGA--------------------GAGAAGAGCCAACGAACT---CGTGCA---------
dp5 4_group5:1150642-1150875 + GCTCTC--------------------------------------------TCT------TCAG--CAT-----AAAACTAGCAAGACTTGTTT---T-----------------------------------TTTGCG------C-AAA-ACA----CGAAAACCGGTAAATTTT------------TGAAATT---G---CACACA---GAGA-GACTGAGA-------GAGAGAGAGAGA----GA--GC--GTT------------------------------------------GGTTGGGA------TTTGTTCTTGTGCTGG-----------------------------------AATTT--------C-GTT-TAAACCATA-TTTTTCACACACTTTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AA--GCG----C-TGAA--------------------AGAAGAGCCAACGAACT---CGTGCA---------
droPer2 scaffold_5:5558136-5558363 + GCTCTC--------------------------------------------TCT------TCAG--CAT-----AAAACTAGCAAGACTTGTTT---T-----------------------------------TTTGCG------C-AAA-ACA----CGAAAACCGGTAAATTTT------------TGAAATT---G---CACACA---GAGA-GACTGAGA-----------GAGAGAGA----GA--GC--GTT------------------------------------------GGTTGGGA------TTTGTTCTTGTGCTGG-----------------------------------AATTT--------C-GTT-TAAACCATA-TTTTTCACACAC--TGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AA--GCG----C-TGAA--------------------AGAAGAGCCAACGAACT---CGTGCA---------
droWil2 scf2_1100000004521:4281457-4281718 + TCTGG----------------------------------------------CT----TG-TAGTATAT-----GAAACTAGTAAGACTTGTTT----------------------------------------TTGCA--------AAA-ACACAAGTAAAAACCGGTAAAATTT------TT--AT--AGAGA---G---CA-TCAT--TATG-A------------------------------GA-----------------------------------------------------------------CT-TCTCCTACGT------C----------------TTTTTTTTATGGTGGAATTT--------T-GCT-TTAACCATACTTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACTCACACACACACGCGCATATGCATATGCATACATGT---------GTATATATGCATG---------------------TAGAAGAGCCAACGAACTTCTCGTGCAAGA---GCG
droVir3 scaffold_12723:2962974-2963273 - GTTTGCACACAT--------------------------------------TCA-------ACA--ACA-----GAAACTAGTAGGACTTGTTT---TTT----GCGCGT-----------------TGTT--TTTACGCAAAAAA-AAG-AAG----AAAAAACCGGTAAGATTT-----------TAGAAACG---G---CA-GCAG--CAAA-AC-----A-------------CAAA-----------------TATGATTCTGTGGTTAGGTGTGGTGTGTGCGTGTGTGTGTCTG-----------------------TG------TCTGTTTCTGTTGATG---TCTCGTTGCGGTAGAATTC--------C-GCG-TTAATCATA-GTTTTCACACACTCCGCTTTTCTTACAGTTTTGTAAACACGCAAACG-----------------------------CACACACAT--GCT----C-GCAT--------------------ACAACGAGCAACGAACT---CGTGCA------GCA
droMoj3 scaffold_6500:6905684-6906007 + ACGCA--------------------------------------------CTCA-------TTA--ACA-----AAAACTAGTAGGACTTGTTT---TTT----GCGTTG-------------------TT--TTTACG------C-AAAAGC-----AAAAAACCGGTAAGATTT------C-----AGAAGCGACGGTAGCA-GCAGCAGAACAAC-----A-------------GAAA-----------------TGTCATT-----------------GTGTGCGTATGTGTGCCTGAATGCAGTGA--------GCTTGTGTTGG----------------TGTATCTTCGCTGTGGTAGAATAC--------C-ACG-TAAATCATA-GTTTTCACACAC--CGCTTTTCTTACAGTTTTGTAAACATGTACACACACACATGCATATGCATACACACACACAC---------ACACACACACACA-AACGCATACTAGCAGATAC-----CGAG-CAACGAACT---CGGGCA------GCA
droGri2 scaffold_15126:519644-519947 + GCGCAT--------------------------------------------GCA---------GCAACAACAACAAAACTAGTAGGACTTGTTT---TTT----GCGCGA-----------------TGTT--TTTACG------C-AAA--------AAAAAACCGGTAAACTTT------T------AAAGCG---G---CA-GCA----------------------------------------A--A------TGTGATT-----------------GTG----TATGTGTGCTTGGATGCGGTGT---GTTGTTGGTGTATTGGTGTC----------------GTCGCGTTGTGGTAGAATTG-------TG-CCT-TAACCCATA-GTTTTCACACAGTCCGCTTTTCTTACAGTTTTCTAAACACACACCAACA-ACACACA-------------------CACACACAT--GCACGCACTC-AA----ATACTAGTGCACAACGA-----G-CAACGAACTCCTCGTGCAGCAGCAGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCTCTCACGCCTT-TCT-G----CTCTCT-----------A------CTCTCT-------CGA--TTT-----AAAACTTGTAGGACTTGTTT---CTT----GAGCTT-------------------TT--TTTGCG--------AAA-ACA----TAAAAACCGGTAAATTTT------TT-TTTCGAAACT---G---CAGGCA---GAGA-AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GT---GTTGTTCCTGTATTGG-----------------------------------CATTT------TTT-ACC-TTAACCATA-TTTTTCACACACTTTGCTTTCCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---CG--CA---------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................TT-----AAAACTTGTAGGACTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00300300000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAAC...................2812.00200000002000000000
.........................................................................AAAACTTGTAGGACTTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAA....................2711.00100000010000000000
.................................................................................................................................................................................................................................................C----GA--GCT-------------------------------------------------------GT---GTTGTTCCTGTATTGG-----------------------------------CATT....................................................................................................................................................................................2811.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAACACACACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGA................................2911.00100000010000000000
..............................................................................................................................................................................................................................A-------------GAGAGC----GA--GCT-------------------------------------------------------GT---GTTGTT.....................................................................................................................................................................................................................................2011.00110000000000000000
................................................TCTCT-------CGA--TTT-----AAAACTTGTAGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGAAGAGCCAACGAACT---C..............2111.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGAAGAGCCAAC.......................1550.20100000000001000000
droSec2
GCTCTCACGCCTG-TCT-G----CTCTCT-----------A------CTCTCT-------CGA--TTT-----AAAACTTGTAGGACTTGTTT---CTT----GAGCTT-------------------TT--TTTGCG--------AAA-ACA----TAAAAACCGGTAAATTTT------TT--TTCGAAACT---G---CAGGCA---GAGA-AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GTGTTGTTGTTCCTGTATTGG-----------------------------------CATTT------TTT-ACC-TTAACCATA-TTTTTCACACACTTTGCTTTCCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---CG--CA---------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................GTGTTGTTGTTCCTGTATTGG-----------------------------------........................................................................................................................................................................................2111.0010001
.....................................................................................................................................................................................................................................................................................................................TGTTGTTGTTCCTGTATTGG-----------------------------------C.......................................................................................................................................................................................2111.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---...............2711.0011000
dm3
GCTCTCACGCCTTTTCT-G----CTCTCT-----------C------CTCTCT-------CGA--TTT-----AAAACTTGTAGGACTTGTTT---CTT----GAGCTT-------------------T---TTTGCG--------AAA-ACA----TAAAAACCGGTAAATTTT------TT--TTCGAAACT---G---CAGGCA---GAGA-AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GTGTTGTTGTTCCTGTATTGG-----------------------------------CATTT------TTT-ACC-TTAACCATA-TTTTTCACACACTTTGCTTTCCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---CG--CA---------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................GCT-------------------------------------------------------GTGTTGTTGTTCCTG.................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000300000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAA....................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACAGTTTTCTAAACAC...................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TGTTGTTGTTCCTGTATTGG-----------------------------------C.......................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................GAAACT---G---CAGGCA---GAGA-AA-----A-------------GAG.....................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
.....................................................................................................................................................................................................G---CAGGCA---GAGA-AA-----A-------------GAGAGC----G.............................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGCCAACGAACT---CG--CA---------2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCGAAACT---G---CAGGCA---GAGA-AA-----A-------------GAGA....................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
.......................................................................................................................................................................................................................AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GTGTT...........................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................T--TTCGAAACT---G---CAGGCA---GAGA-AA-----A-------------GA......................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA-------A-----------------ACGAGAAGAGCCAACGAACT---CG--C..........2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ACAGA-------A-----------------ACGAGAAGAGCCAACGAA....................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
.................................................................................TAGGACTTGTTT---CTT----GAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AAACTTGTAGGACTTGTTT---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
.....................................................................................................................................................................................................G---CAGGCA---GAGA-AA-----A-------------GAGA....................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
........................................................................................................................................................................................................................................................................................................................TGTTGTTCCTGTATTGG-----------------------------------CATTT------TTT-AA.......................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................A-AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GTG.............................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................A-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GTGTTGTTGTT.....................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000
..............................................................................................................................................................................................................................................GAGC----GA--GCT-------------------------------------------------------GTGTTGTTGTTC....................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................T-------------------------------------------------------GTGTTGTTGTTCCTGTATTGG-----------------------------------........................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................A---GAGA-AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GTGTTG..........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TCCTGTATTGG-----------------------------------CATTT------TTT-ACC-T....................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CT-G----CTCTCT-----------C------CTCTCT-------CGA--TT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................GAAACT---G---CAGGCA---GAGA-AA-----A-------------G.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TCCTGTATTGG-----------------------------------CATTT------TTT-ACC-TTAACC...............................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGCTTTCCTTACAGTTTTC..........................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAA........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................T---G---CAGGCA---GAGA-AA-----A-------------GAGAGC----..............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AAACT---G---CAGGCA---GAGA-AA-----A-------------GAG.....................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................T---G---CAGGCA---GAGA-AA-----A-------------GAG.....................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--ACAGA-------A-----------------ACGAGAAGAGCCAA........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AGC----GA--GCT-------------------------------------------------------GTGTTGTTGTTCC...................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................CT-------CGA--TTT-----AAAACTTGTAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GCT-------------------------------------------------------GTGTTGTTGTTCCTGTATTGG-----------------------------------CAT.....................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAG..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................T---CTT----GAGCTT-------------------T---TTTGCG--------AAA-..............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................AGAGC----GA--GCT-------------------------------------------------------GTGTTGTT........................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................GAGAGC----GA--GCT-------------------------------------------------------GTGTTGTTG.......................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................G---CAGGCA---GAGA-AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------G...............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................TTT------TT--TTCGAAACT---G---CAGGCA---..................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGA.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................................................GAAACT---G---CAGGCA---GAGA-AA-----A-------------GAGAG...................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GCT-------------------------------------------------------GTGTTGTTGTTCCTGTATTGG-----------------------------------C.......................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAAC.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....CACGCCTTTTCT-G----CTCTCT-----------C------CTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCGAAACT---G---CAGGCA---GAGA-AA-----......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................TT--TTCGAAACT---G---CAGGCA---GAG...............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------A-----------------AC....................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................G---CAGGCA---GAGA-AA-----A-------------GAGAGC----..............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TTT------TTT-ACC-TTAACCATA-TTTTTCACA..................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TTTT------TT--TTCGAAACT---G---CAGGC......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------A-----------------ACGAGAAGAGCCAACGA.....................2011.0010000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CA---GAGA-AA-----A-------------GAGAGC----GA--GC........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.......................................................................................................................................................................................................................................................A--GCT-------------------------------------------------------GTGTTGTTGTTCCTGTA...............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGC...........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CTTACAGTTTTCTAAACACACACAC-------------------------------------T.......................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................T---G---CAGGCA---GAGA-AA-----A-------------GAGAGC----GA--GC........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................TTCACACACTTTGCTTTCCTTACA................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................T---G---CAGGCA---GAGA-AA-----A-------------GAGAGC----G.............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................CTT----GAGCTT-------------------T---TTTGCG--------AAA-AC............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................GAAACT---G---CAGGCA---GAGA-AA-----A-------------GAGA....................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
........................TCTCT-----------C------CTCTCT-------CGA--TTT-----AAAACTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--ACAGA-------A-----------------ACGAGAAGAGCCA.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................G---CAGGCA---GAGA-AA-----A-------------GAGAGC----GA--G.........................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................TAGGACTTGTTT---CTT----GAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CCTTTTCT-G----CTCTCT-----------C------CTCTCC-------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAG............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AAACT---G---CAGGCA---GAGA-AA-----A-------------GA......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AGGCA---GAGA-AA-----A-------------GAGAGC----GA--G.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................ACT---G---CAGGCA---GAGA-AA-----A-------------GAGAGC----G.............................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GTGTTGTTGTTCCTG.................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................CT---G---CAGGCA---GAGA-AA-----A-------------GAG.....................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................................................ACT---G---CAGGCA---GAGA-AA-----A-------------GAGA....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--ACAGA-------A-----------------ACGAGAAGAGCC..........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CACACTTTGCTTTCCTTACAG...............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................CAGGCA---GAGA-AA-----A-------------GAGAGC----GA--..........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAACACACACAC-------------------------------------AT--ACAGA-------........................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GTTCTCACGCCTT-TTT-G----CTCTCTCT-----C--TC------TTCTCT-------TGA--TTT-----AAAACTTGTAGGACTTGTTT---CTT----GAGCTT-------------------T---TTTGCG--------AAA-ACA----TAAAAACCGGTAAATTTT------T---TTCGAAACT---G---CAAGCA---GAGA-AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GTGTTGTTGTTCCTGTATTGG-----------------------------------CATTTTTTTTTTTT-ACC-TTAACCATA-TTTTTCACACACTTTGCTTTCCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAAA-------A-----------------ACGAGAAGAGCCAACGAACT---CGTGCA---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--ACAAA-------A-----------------ACGAGAAGAGC...........................1911.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTAAACACACACAC-------------------------------------AT--ACAAG-------........................................................2411.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AACACACACAC-------------------------------------AT--ACAAA-------A-----------------......................................1920.5011000000
droYak3
GCTCTCACGCCTA-TTT-G----CTCTCT-----------C------CTCTCT-------TGA--TTT-----AAAACTTGTAGGACTTGATT---CTT----TAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCA--------AAA-ACA----TAAAAACCGGTAAATTTT------TT--TTTGAAACT---G---CAAGCA---GAGA-AA-----A-------------GAGAGC----GA--GCT-------------------------------------------------------GTGTTGTTGTTCCTGTATTGG-----------------------------------CATTTT-T--TTTT-ACC-TTAACCATA-TTTTTCACACACTTTGCTTTCCTTACAGTTTTCTAAACACACAC---------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---CGTGCA---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAACACACAC---------------------------------------AT--ACAGA-------........................................................1911.00101000000000
............................................................................................................................................................................................................................................................T-------------------------------------------------------GTGTTGTTGTTCCTGTATTGG-----------------------------------CAT.....................................................................................................................................................................................2511.00100000000001
..........................................................................................................................................................................................................................................................GCT-------------------------------------------------------GTGTTGTTGTTCCTGTATTG............................................................................................................................................................................................................................2311.00100100000000
..........................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100000000
droEug1
GCTCACACGCCTT-ATT-G----CTCTCTCT-----T--T-TTAATTCTCTCA-------TGA--AAT-----AAAACTTGTAGGACTTGTTT---CTT----GAGCTT-------------------T----TTGCA--AACGCAAAA-ACA----TAAAAACCGGTACATTCT------T------TAAACT---G---CAAGCT---GAAA-AA-----A-------------GAGAGC----GT--GCT-------------------------------------------------------GTG-TGTTGTTCCTGTATTGG-----------------------------------TTTTTT-TTGTTTT-ACT-T-TACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACT----C-AA-A-----------------ACGAGAAGAGCCAACGAACT---CG---A---------SizeHit CountTotal NormTotal
No Reads
droBia1
GCTCTCACGCCTG-TTT-G----CTCTCTCT-----CTCTCT-----CTCTCTCGCTCA-TAA--TAT-----AAAACTTGTAGGACTTGTTT---TTT----GAGCTT-------------------T---TTTGCA--------AAA-ACA----T---AACCGGTACATTCTTCTTTTTCTTTTTCAAATT---G---CAAGCT---GAGA-AA-----A-----------GAGAGAGC----GA--GCT-------------------------------------------------------GTG-TGTTGTTCCTGTATTGG-----------------------------------AATTTG-TTGTTTT-ACTTTTTACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---CGTGCA---------SizeHit CountTotal NormTotal
No Reads
droTak1
GCTCTCACGCCTT-AAT-G----CTCTCCCTGCTGCC--TCTCCAGTCTCTCA-------TGA--TAT-----AAAACTAGTAGGACTTGTTT---TTT----GAGCTT-------------------T----TTGCA--------AAA-ACA----TAAAAACCGGTACATTTT------TT-TTTCGAAATT---G---CAAGCT---GAGA-AA-----A---------------GAGC----GA--GCT-------------------------------------------------------GT---GTTGTTCCTGTATTGG-----------------------------------AATTTT-TTGTTTT-AC--TTAACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------A-----------------ACGAGAAGAGCCAACGAACT---CGTGCA---------SizeHit CountTotal NormTotal
No Reads
droEle1
GCTCTCACGCCTT-TTT-G----CCCTCTTC-C--TC--TCTTCA--CTCTCT-------TGA--AAT-----AAAACTTGTAGGACTTGTTT---TAT----GAGCTT-------------------T----TTGCA--ACCGC-AAA-ACA----TAAAAACCGGTACATTTT------TTTTTTTGAAACT---G---CAAGCT---GAGA-AA-----A-----------GAGAGAGC----GA--G------------------------------------------------------------TTGTTGTTCCTGTGTAGG-----------------------------------AATTT-------TT-ACT-TAAACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------C-----------------TCGGAAAGAGCCAACGAACT---CGTGCA---------SizeHit CountTotal NormTotal
No Reads
droRho1
GCTCTCACGCCTT-TTT-G----GCCTCTCC----------------CTCTCT-------GGA--AAT-----AAAACTTGTAGGACTTGTTT---TAT----GAGCTT-------------------T----TTGCA--AACGC-AAA-ACA----TAAAAACCGGTAGATTTT------TT--TTTTAAACT---G---CAAGCT---AAGA-AA-----A-----------GAGAGAGC----GA--GCG-------------------------------------------------------G--TTGTTGTTCCTGTGTAGG-----------------------------------AATTT-------TT-ACT-TAAACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AA--ACAGA-------C-----------------ACGGGAAGAGCCAACGAACT---CGTGCA---------SizeHit CountTotal NormTotal
No Reads
droFic1
ACTCTT------------------CCTCT-----------C------CTCTCT----TA-TAG--TAT-----GAAACTTGTAGGACTTGTTT---TTTCGGAGAGCTT-------------------T----TTGCA--AACGCAAAA-ACA----TAAAAACCGGTACATTTC------T----TTGAAACT---G---CAAGCT---GAGA-AA-----A-----------GAGAGAGC----GA--GCT-------------------------------------------------------GT---GTTGTTCCTGTGTTGG-----------------------------------CATTT------TTTCACT-TTAACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACAGA-------C-----------------ACGAGAAGAGCCAACGAACT---CGTGCA---------SizeHit CountTotal NormTotal
No Reads
droKik1
GCTCTCACGCCTT-TTTCGTTCGGC----------------------CTCTC---------AG--TGG----CGGAACTTGTAGGACTTGTTTTTTTTT----GCGCTT-------------------T----TTGCA--AACGC-GAA-TCA----TACAAACCGGTACGTTTT------------TGAAAAT---G---CAAGCC---GAAGAAA-TG--A-------------GAGAGCGTGAGA--GTTGGGT---------------------------------TGC--------TAGCAT-AAACTGTTTCTCCTGTGTTGG-----------------------------------AATTT--------T-ACT-TTAACCATA-TTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AT--ACACA-------C-----------------ACGA-AAGAGCCAACGAACT---CGTGCA---------SizeHit CountTotal NormTotal
No Reads
droAna3
TT------------TCT-G----CTCTCCCT------------------C-CA-------TAA--TGT-----AAAACTTGTGGGACTTGTTT----TT----GCACTT-------------------T----TTGCA--AATGC-GAA-TCA----TAAAAACCGGTACATTTT------------TGAAAAT---G---CACGCTGCAGAGA-GAGC---GCATATAAGCCAGAGA--GA----GAGTGC--GTT---------------------------------TGCGTTTATTGTTGGAG-GAGCTCTTGTTCGTGTGCCGG-----------------------------------AATTT--------T-TCT-TTAACCACA-TTTTTCACACAC--TGCTTTTCTTACAGTTTTCTAAACACACATACA-----------------------------CACACACACACACACACTCACGA--------------------GAGAAGAGCCAACGAACT---CGTGCA---------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................G-GAGCTCTTGTTCGTGTGCCGG-----------------------------------AAT.....................................................................................................................................................................................2512.002000002
...................................................................................................................................................................CCGGTACATTTT------------TGAAAAT---G---CACGC......................................................................................................................................................................................................................................................................................................................................................2511.001010000
.....................................................................................................................................................................................................................................................................................................GTTTATTGTTGGAG-GAGCTCTTGTTCG...................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACACACACACACTCACGA--------------------GA..................................2411.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACACACACTCACGA--------------------GAGAAGA.............................2511.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATACA-----------------------------CACACACACACACA.................................................................23200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATACA-----------------------------CACACACACACA...................................................................20200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATACA-----------------------------CACACACACACAC..................................................................21200.051010000
droBip1
TCTT-------------------CTCTCT-----------C------C-CTCT------TTAA--TGT-----AAAACTTGTGGGACTTGTTT----TT----GCACTT-------------------T----TTGCG--AATGC-GAA-TCA----TAAAAACCGGTACATTTT------------TGAAAAT---G---CACGCTGAAGAGA-GAG-----CATGCCAGCCAGAGA--GA----GAGTGC--GTT----------------------------------------ATAGTTCGAG----------CTCCTGT--------C----------------CTGTTTGTGTGCCGGAATTT--------T-TCT-TTAACCACA-TTTTTCACACAC--TGCTTTTCTTACAGTTTTCTAAACACACATAC-------------------------------------AC--ACACACTCACGA--------------------GAGAAGAGCCAACGAACT---CGTGCA---------SizeHit CountTotal NormTotal
No Reads
dp5
GCTCTC--------------------------------------------TCT------TCAG--CAT-----AAAACTAGCAAGACTTGTTT---T-----------------------------------TTTGCG------C-AAA-ACA----CGAAAACCGGTAAATTTT------------TGAAATT---G---CACACA---GAGA-GACTGAGA-------GAGAGAGAGAGA----GA--GC--GTT------------------------------------------GGTTGGGA------TTTGTTCTTGTGCTGG-----------------------------------AATTT--------C-GTT-TAAACCATA-TTTTTCACACACTTTGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AA--GCG----C-TGAA--------------------AGAAGAGCCAACGAACT---CGTGCA---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................AGAGA----GA--GC--GTT------------------------------------------GGTTGG...................................................................................................................................................................................................................................................1811.0010000000001
droPer2
GCTCTC--------------------------------------------TCT------TCAG--CAT-----AAAACTAGCAAGACTTGTTT---T-----------------------------------TTTGCG------C-AAA-ACA----CGAAAACCGGTAAATTTT------------TGAAATT---G---CACACA---GAGA-GACTGAGA-----------GAGAGAGA----GA--GC--GTT------------------------------------------GGTTGGGA------TTTGTTCTTGTGCTGG-----------------------------------AATTT--------C-GTT-TAAACCATA-TTTTTCACACAC--TGCTTTTCTTACAGTTTTCTAAACACACACAC-------------------------------------AA--GCG----C-TGAA--------------------AGAAGAGCCAACGAACT---CGTGCA---------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................CA---GAGA-GACTGAGA-----------GAGAGA....................................................................................................................................................................................................................................................................................................................2030.331100000
droWil2
TCTGG----------------------------------------------CT----TG-TAGTATAT-----GAAACTAGTAAGACTTGTTT----------------------------------------TTGCA--------AAA-ACACAAGTAAAAACCGGTAAAATTT------TT--AT--AGAGA---G---CA-TCAT--TATG-A------------------------------GA-----------------------------------------------------------------CT-TCTCCTACGT------C----------------TTTTTTTTATGGTGGAATTT--------T-GCT-TTAACCATACTTTTTCACACACTCTGCTTTTCTTACAGTTTTCTAAACACTCACACACACACGCGCATATGCATATGCATACATGT---------GTATATATGCATG---------------------TAGAAGAGCCAACGAACTTCTCGTGCAAGA---GCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACGAACTTCTCGTG...........1811.00101000
........................................................................................................................................................................AAAATTT------TT--AT--AGAGA---G---CA-TCA.....................................................................................................................................................................................................................................................................................................................................................2211.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCACACACACACGCGCATATGCATA..........................................................................................2811.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCCAACGAACTTCTCGTG...........2111.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGCATG---------------------TAGAAG..............................1911.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACATGT---------GTATATATGCATG---------------------TAGA................................2711.00100100
droVir3
GTTTGCACACAT--------------------------------------TCA-------ACA--ACA-----GAAACTAGTAGGACTTGTTT---TTT----GCGCGT-----------------TGTT--TTTACGCAAAAAA-AAG-AAG----AAAAAACCGGTAAGATTT-----------TAGAAACG---G---CA-GCAG--CAAA-AC-----A-------------CAAA-----------------TATGATTCTGTGGTTAGGTGTGGTGTGTGCGTGTGTGTGTCTG-----------------------TG------TCTGTTTCTGTTGATG---TCTCGTTGCGGTAGAATTC--------C-GCG-TTAATCATA-GTTTTCACACACTCCGCTTTTCTTACAGTTTTGTAAACACGCAAACG-----------------------------CACACACAT--GCT----C-GCAT--------------------ACAACGAGCAACGAACT---CGTGCA------GCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................CTCGTTGCGGTAGAATTC--------C-GC.......................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
....GCACACAT--------------------------------------TCA-------ACA--ACA-----GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AAA-AAG-AAG----AAAAAACCGGTA...........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
ACGCA--------------------------------------------CTCA-------TTA--ACA-----AAAACTAGTAGGACTTGTTT---TTT----GCGTTG-------------------TT--TTTACG------C-AAAAGC-----AAAAAACCGGTAAGATTT------C-----AGAAGCGACGGTAGCA-GCAGCAGAACAAC-----A-------------GAAA-----------------TGTCATT-----------------GTGTGCGTATGTGTGCCTGAATGCAGTGA--------GCTTGTGTTGG----------------TGTATCTTCGCTGTGGTAGAATAC--------C-ACG-TAAATCATA-GTTTTCACACAC--CGCTTTTCTTACAGTTTTGTAAACATGTACACACACACATGCATATGCATACACACACACAC---------ACACACACACACA-AACGCATACTAGCAGATAC-----CGAG-CAACGAACT---CGGGCA------GCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................CAGTGA--------GCTTGTGTTGG----------------TGTATCT....................................................................................................................................................................................................2411.001010000
..................................................................................................................................................................................................................................................................GTCATT-----------------GTGTGCGTATGTG..............................................................................................................................................................................................................................................................1911.001010000
..................................................................................................................................................................................................................................................................................................................GTGA--------GCTTGTGTTGG----------------TGTA.......................................................................................................................................................................................................1911.001010000
..................................................................................................................................................................................................................GAACAAC-----A-------------GAAA-----------------TGTCATT-----------------GTGTGCGT...................................................................................................................................................................................................................................................................2711.001000001
droGri2
GCGCAT--------------------------------------------GCA---------GCAACAACAACAAAACTAGTAGGACTTGTTT---TTT----GCGCGA-----------------TGTT--TTTACG------C-AAA--------AAAAAACCGGTAAACTTT------T------AAAGCG---G---CA-GCA----------------------------------------A--A------TGTGATT-----------------GTG----TATGTGTGCTTGGATGCGGTGT---GTTGTTGGTGTATTGGTGTC----------------GTCGCGTTGTGGTAGAATTG-------TG-CCT-TAACCCATA-GTTTTCACACAGTCCGCTTTTCTTACAGTTTTCTAAACACACACCAACA-ACACACA-------------------CACACACAT--GCACGCACTC-AA----ATACTAGTGCACAACGA-----G-CAACGAACTCCTCGTGCAGCAGCAGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:30 PM