ID:

dsi_10839

 Coordinate:

2r:8184222-8184371 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [2r_8184166_8184221_-]; exon [2r_8184039_8184221_-]; intron [2r_8184222_8207686_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATTGCCAACACAGAGAGCGGAGTAATAGCGAAGATTGAAGTTGAAAAATGAAACCAATTGATGAATGGTATCTTCCAGATACAAGTGTTTTATATTCACTTAAATTACTATAAGTGTTAAATCCTATATATGGCAACATATGTAAAAGTTGAAGACAAGTAAATATCTTATAAATATTCCATTTTCAAAATCTTTTGCAGACTCCCAACGCATGTTACGCACAATAGTTGGTCCTAAGAACTAGGGGATT
**************************************************.......((((.((((((........(((((....((((((..(((((((((........))))))........((((((((....))))))))..)))..))))))......)))))..........))))))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M053
female body
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR902009
testis
 O001
Testis
.................................................................................CAAGTGTATTATATTCGCT...................................................................................................................................................... 19 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAATAGTTGGTCCTAAGAACT........ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TACGCACAATAGTTGGTCCTAAGAACTA....... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGTTTTATGTTCACTTGAATTAAT............................................................................................................................................. 24 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ACGCATGTAAAGCACAATTGTT..................... 22 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................CAAGTGTATTATATTC......................................................................................................................................................... 16 1 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................CAAGTGTATTATATTCGC....................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGTTAAAGTTGAAAACAAGTAGA....................................................................................... 23 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................TAGTCGGTCCTAAGA........... 15 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................GTCCTAAGATATAGGG.... 16 2 16 0.19 3 0 0 0 0 0 2 1 0 0 0 0
........................ATAGCGATGATTGACGTT................................................................................................................................................................................................................ 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TCCTAAGCTCTAGGGGA.. 17 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0
..............................AGGATTGACGTTGAAAAA.......................................................................................................................................................................................................... 18 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.................................ATTGAAGTTGAAAAATT........................................................................................................................................................................................................ 17 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
................GCGTAGTAATAGTGAAGCT....................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................CCTACTGATGAATGGTACC.................................................................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................GGTCCTAAGATATAGG..... 16 2 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0
......................TCATGGCGAAGATTGAATTT................................................................................................................................................................................................................ 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................AGATTAGTCGGTCCTAAG............ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TAACGGTTGTGTCTCTCGCCTCATTATCGCTTCTAACTTCAACTTTTTACTTTGGTTAACTACTTACCATAGAAGGTCTATGTTCACAAAATATAAGTGAATTTAATGATATTCACAATTTAGGATATATACCGTTGTATACATTTTCAACTTCTGTTCATTTATAGAATATTTATAAGGTAAAAGTTTTAGAAAACGTCTGAGGGTTGCGTACAATGCGTGTTATCAACCAGGATTCTTGATCCCCTAA
**************************************************.......((((.((((((........(((((....((((((..(((((((((........))))))........((((((((....))))))))..)))..))))))......)))))..........))))))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M053
female body
 O002
Head
 GSM343915
embryo
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............................................................................AAGTTCACATAATATAAGCGA...................................................................................................................................................... 21 3 6 13.17 79 39 0 39 0 0 1 0 0 0 0
..................................................................................TTCACATAATATAAGCGAA..................................................................................................................................................... 19 2 3 13.00 39 39 0 0 0 0 0 0 0 0 0
................................................................................AGTTCACATAATATAAGCGA...................................................................................................................................................... 20 3 13 13.00 169 156 13 0 0 0 0 0 0 0 0
.................................................................................GTTCACATAATATAAGCGA...................................................................................................................................................... 19 2 1 5.00 5 0 3 0 2 0 0 0 0 0 0
..............................................................................TAAGTTCACATAATATAAGCGAA..................................................................................................................................................... 23 3 1 3.00 3 0 3 0 0 0 0 0 0 0 0
..............................................................................TAAGTTCACATAATATAAGCGA...................................................................................................................................................... 22 3 3 1.00 3 0 2 0 0 0 0 0 1 0 0
.................................................................................GTTCACATAATATAAGCGAA..................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................AGTTCACATAATATAAGCGAA..................................................................................................................................................... 21 3 5 0.60 3 0 1 0 0 0 0 2 0 0 0
..............................................................................TAAGTTCACATAATATAAGCG....................................................................................................................................................... 21 3 5 0.60 3 0 1 0 2 0 0 0 0 0 0
.....................................................................................................................................................................................AAAAGGTTTAGATAACGT................................................... 18 2 20 0.50 10 0 0 0 0 0 8 1 0 0 1
..................................................................................TTCACATAATATAAGCGA...................................................................................................................................................... 18 2 6 0.33 2 0 2 0 0 0 0 0 0 0 0
...................................................................................TCACATAATATAAGCGAAA.................................................................................................................................................... 19 3 20 0.25 5 0 2 0 0 0 2 0 0 0 1
................................................................................AGTTCACATAATATAAGCG....................................................................................................................................................... 19 3 20 0.25 5 0 5 0 0 0 0 0 0 0 0
.................................................................................GTTCACATAATATAAGCG....................................................................................................................................................... 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0
.......TGTGTCTCTCGGCTC.................................................................................................................................................................................................................................... 15 1 10 0.20 2 0 0 0 0 0 0 0 0 2 0
...................................................................................TCACATAATATAAGCGAA..................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0
...........................CGCTGCTAACTTCAA................................................................................................................................................................................................................ 15 1 8 0.13 1 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:8184172-8184421 - dsi_10839 ATTGCCAACACAGAGAGCGGAGT-AATAG----CGAAGATT----GAA----GTTGAAAAA----TGAAACCAATTGATGAAT---GGTATCTTCCA------GA-TACAAGTGTTTTATATTCACTTAAATTACT----------------ATAAGTGTTAA--ATCCTAT---------ATATGGCAACATA---TGTAAAAGTTGAAGACAAGTAAA---------------TA------------------------------T--------------------------------------------------------------CTTATAAATATTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-TCAAAATCTTTTGCAGACTCCCAACGCATGTTACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-CTAG---------GGGA------------------------TT
droSec2 scaffold_1:5030450-5030699 - CTTGCCAACACAGAGAGCGGAGT-AATAG----CGAAGATT----GAA----GTTGAAAAA----TGAAACCAATTGATGAAT---GGTATCTTCCA------GA-TACAAGTGTTTTATCTTCACTTTAGTTAGT----------------ATAAGTGTGAA--ATCCTAT---------ATATGGCAACATA---TGTAAAAGTTGAAGACAAGTAAA---------------TA------------------------------T--------------------------------------------------------------ATTATAAATATTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-TCAAAATCTTTTGCAGACTCCCAACGCATGTTACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-CTAG---------GGGA------------------------TT
dm3 chr2R:7479631-7479883 - ATTGCCAACATAGAGAGCGGAGT-AATAA----CGAAGATT----GAA----GTTGAAAAA----TGAAACCAATTGATGAAT---GGTATCTTCAA------AA-TACAAGTGTTGTGTATTCACTTAAGTTACT----------------ATTACTGTAA-AGATTCTATAC-------ATATGGCAACATA---TGTAAAAAAAGAATACAAGTAAA---------------TA------------------------------T--------------------------------------------------------------CTTATAAGTATTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-TCTAAATCCTTTGCAGACTCCCAACGCATGTTACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-CTAG---------GGGA------------------------TT
droEre2 scaffold_4845:18316199-18316510 + ATTGCCAACACAGAGAGCGGAGT-AATAG----CTAAGATT----GAA----GTTGAAAAA----TGAAACCGATTGATGAAT---GGTATCTTCGA------AA-TACAAGTGTTGTGTATTCACATGAGTTACT----------------ATGACTGTTAA--AATAAAT---------TCTTGTTTACATATTTTGTAGAA------------------------------------------------------------------------------------------------------------------------ATGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAATAGTTTAATT---------TAATATTAATTAAA-----------ATAAATTTTCATACC--ATTT----ATATC-----TCAAATA-------------------C-------------------------------------AAAGAATATATCAT--------------------------------------------------------------AAAATT-----------G-----CTATTT-TCTGTATTCATTGCAGACTCCAAACGCATGTTACGCAC-------A---ATAGCTGGTC----C-------T---------AA-GAA-CTAG---------GGGA------------------------TT
droYak3 2R:9475354-9475685 + ATTGCCAACACAGAGAGCGGAGT-AATAG----CGAAGATT----GAA----GTTGAAAAA----TGAAACCGTTTGATGAAT---GGTATCTTCAA------AA-TACAAGTGTAGTGT--ACATTTGAGTTACT----------------ATAACTGTTAAAAATACTATATAAAGTGTTCTTGTCTACATAATGTGTAAAA------------------------------------------------------------------------------------------------------------------------AATTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGAAATAGTTCAATTGATTTGATCTAATTTTAATTAAA-----------ATAATTTTACGTACC--ATTTACATATATC-----TCGAATA-------------------C-------------------------------------AAAGAAT--ACCTA--------------------------------------------------------------AA---AAA--------TG-----TAATTT-TCTGAATTTATTGCAGACTCCAAACGCATGTTACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-CTAG---------GGGA------------------------TT
droEug1 scf7180000409462:1018468-1018871 + ATTGCCAACACAGAGAGTGGAGT-ATCAG----CGAAGAGCAAATGAA----GTTGAAAAT----CGAACCCGATTGATGAATTATTGGATCTTAGG------GATTGCAAGTGTTTTGATTATAGATCAGATACT----------------TT-----------------------------TTGTTTCTATTTTTTTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATA---TG-------GGAAATTGTGATGTTTTTAATCTTGCTTAATAAGGTGTTGAATAAAAAAAAATC----------------------------------------------------------------------------------------------------------------------------------------------------GTCCTTT---------TTCTATATTTTTTTTATCGTCGGATATATTAGAAAATAAT--AATA--ATA--AATATATTTGAAAAGAGAAAGAAAGTTTAAGCTAATTTATACAAGTTTATAGTATTTTTGATTAACTTTCAATTAATTAA-----GATTTT-T--CTCCTTTTTTCAGACTCTAAACGCATGTTACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-CTAG---------GGGA------------------------TT
droBia1 scf7180000302292:249913-250028 - ATTGCCAGCACAGAGAGTGGAGT-AATAG----CGAAGAGCGGAAGAA----GCCGAAAAT----CGAAACCAATTGATGAAC---TGTATCTAGGG------GATTACAAGTGTTGTGGTTGCAGTTCAGATACT----------------AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415991:776404-776743 - ATTGCCAACACAGAGAGTGGAGT-AAGAG----CGAAGGGCGAAAGAA----GCTGAAAAT----CGAAACCGATTGATGAAC---TGTATCTTGGG------GATTACAAGTGTTGTGACTGCAATTAAGATTCA----------------GA------------TTGTATTC---------------------------------------------AA--------------TGAAAAATATATTGGAATATTTATATGTGATGGGAAATCCTAATTAATTA----------------------------G--------------------------------------------------------------------------------------------------------------------------------TATTTTAATTTTAAATTAGTAATTATCAGCAAAATTT-ATTTTTTTAAATATGTTTGAGTT--------------------------------------------------------------G-----------TT-----AAATTTAT--------------------------------------------------------TTTATT--ATT-A--------------------------------------------------------------TAAATAAA--------AG-----TATTTT-TTTCCTTTCATTGCAGATTCCAAACGCATGTTACGCAC-------A---GTAGTTGGTC----C-------T---------GA-GAT-CTAG---------GGGA------------------------TT
droEle1 scf7180000491214:2941738-2942060 - ATTGCCAACACAGAGAGTGGAGT-AAAAG---GAGAAGAGCGAAAGAA----GTTGGAAAT----TGAAACCGATTGATGAAT---TGTATCTTTGAGTTTGAGATAACAAGTGTTGCT----------AATTACA----------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCTATTCCTTATTTATTGTTAAATAATTTT--------------AAACA--------------------------------------------------------------------------------TA------------------------------ACTGCAATATTTCAATTGCTT-----TATTATTAATTAATTTTTAATTACTAAGTATTTTCGT--T--ATAGACAAATATG-TTGTTCAAATA-----------------TTC-------------------------------------TAATAAT--CCC-T--------------------------------------------------------------ATAATTGA--------TG--------TT-----ATCTTTTTTTCAGACAT-TAACGCATGTAACGCAC-------A---ATAGTTGGTC----C-------T---------AAAAAA-CTAG---------GAGA------------------------TT
droRho1 scf7180000779263:65034-65332 + ATTGCCAACACAGAGAGTGGAGT-AAAAG---GCGAAGAGCGAAAGAA----GTTAAAAAT----CGAAACCGATTGATGAAT---TGTATCTTTGG------AATTGCAAGTGA----------CTTTAATTACA----------------ATAAATCATAA--ATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAACAA--------------------------------------------TAATTTGTTACTTTATTTTTAAATTT----TTACCAGTAACATTGTTTTATTTTGAAT--TAATGAGCC--------------------------------------------------------------ATT--------TTT-----CAATTTAA--------------------------------------------------------AATAAT--CTC-T--------------------------------------------------------------TCAATAAA--------TG-----TTTCTTAATTATTTTTTTTGCAGACTCCTAACGCATGTTACGCAC-------A---ACTGTTTGTC----C-------T---------AA-AAA-CTAG---------GAGA------------------------TT
droFic1 scf7180000453773:410378-410591 - ATTGCCAACACAGAGAGTGGAGT-AAGAG----CGGAGAGAGAAAAAA----TTTGAAAAT----CAAAAACGATTGATGAAT---TGTATCTTATG------GATTACAAATGTTGTGATTACAA-------------------------------------------------------------------------------------------------------------TG------------------------------GAAA-----------------------------------ATGT---------------TTGAGATCACGAGTGCTAATTTAATATA------AAACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTTTTGCAGACTTTTAACGCATGTTACGCAC-------AATAGTAGTTGGTC----G-------T---------AA-ACA-CTAG---------GGGA------------------------TT
droKik1 scf7180000302386:407855-408191 + ATTGCCAGCACAGAGAGTGGAGT-AAAAA----G-AAGAAAAAAAGGA----GGAGAGAAA----TAA-AGTGATTAATGAAT---AGTT-----------------------GTTGTGT--TGCCTT-AG----TATTAATTCATAAATTAATTACAGTAA-GGCTTCA------------------------A----------------------------------------TG-------------------------TGTTA--ACTTTCTAATTAATAAAATTTATTAATTATAGAAAAAAAAT-----------------TAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCCAAAAACCATTTTATTT--------------------------AGTAAATAATAACAA--CTTA-----------AT-----AACAATA---T--TTTTTGTTTTCTC-TA------------------------------------ATAAT--AAC-C-------------------------------------------------------------------------------ATTTATTTTTTCAACAATATTTCTTGCAGACTCGCAACGCATGTAACGCACACACAACA---ATAGTTGGGG----T-------T---------AA-AAA-TTAA---------AGGG--------------TAC-------TT
droAna3 scaffold_13266:1193891-1194076 - ATTGCCAACACAAAGTGTAGAGT-AAAAA----GG-ATAGC--AAGGATATGGCGAAGGAT----TAAATTAAATTCATA----------------------------------------------------------------------------------------------------------ATAAA------------------------------TAAAAAATAATAAA-----------------------------------------------------------------------------------------ATTTTAATTGTAAT---------------------------------------TAAATACTAATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------TTT-TT--TCTATTTTTCAGAT-CTTAATGCATGTTACCCAA-------A---ATAGTCTCCT----C-------T---------AA-CGT-CTAAC--------GGGG------------------------CT
droBip1 scf7180000396730:2188076-2188279 - ATTGCCAACACAAAGTGTGGAGT-AAAAA----GG-AG--CGCAAGGAT---GTGGCGAATCCGAT-GGGTTGATTGATAAAT---GTTATTATAAG------GATAATTATTGA----------CTTTA---------------------------------------------------------TTAA------------------------------TAAAATAAAATTAA-----------------------------------------------------------------------------------------A-----------------------------------------------TTAATGAATTAATCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-TTTTTATTGTTTTTAGAT-CTTAACGCATGTTACGCAC-------A---ATAATCTCCA----T-------T---------AG-CAT-CTAA---------CGGG------------------------CT
dp5 3:4667258-4667483 - ATTGCCAACACAAAGTGTAGAGT-AGAAA----AGAAGT-----------------------------AACAAACCATTGAAT---GATATTCTGG------------------------------------------------------------------------------------------GTGCCCGAA----------------------------------------TG------------------------------GGTG-----------------------------------GAA---------------ATTATGATTATGAATACCCCCTTTCCAAT------CAATTT-TTTCTCTTTATAAATTATCTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-TTTACACTATCTACAGAATTGAACCGCATGTAGCGCGT-------A---ATAACGGAGC----C-------C---------AA-GAA-CAAA---------AGGAACACCAATTTTA-ACACCATTGGATT
droPer2 scaffold_2:4855600-4855825 - ATTGCCAACACAAAGTGTAGAGT-AGAAA----AGAAGT-----------------------------AGCAAACCACTGAAT---GATATTCTGG------------------------------------------------------------------------------------------GTGCCGGAA----------------------------------------TG------------------------------GGTG-----------------------------------GAA---------------ATTATGATTATGAATACCCCCTTCCCAAT------CAATTA-TTTCTCTTTATAAATTATCTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-TTTACACTATCTAGAGAATTGAACCGCATGTAGCGCGT-------A---ATAACGGAGC----C-------C---------AA-GAA-CAAA---------AGGAACACCAATTTTA-ACACCATTGGATT
droVir3 scaffold_12875:12961734-12961949 + GTTGCCAACATTAAGAGCGAAAACAAGAG----TGA-------GAGCA----GCGC---------------------CTAAGT---GAGATTCGT--------------------G----------------------------------------------------------------------ATGAG-------------------------TTCAA--------------TT------------------------------GAGA-----------------------------------GTAACTGACATTTTAATT-----------------------------------------------------AATAAGCTAACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---T--TTTGCATTCTCTC-TCT-TTTATCAAC-------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAC---------AGAAGAAGCAC-------A---ATAATAATTACATTATTAACAACAACAACAACAA-GAACA----ACTGTAAA-----AACAAACAACA-CCAA-------TT
droMoj3 scaffold_6496:20233092-20233306 + GTTCCCAGCATTGAGAGCGAAAGCAGAATTGAGAGAGCGGCGAATTAA----G-----------------------------C---GAGAGTTGA--------------------A----------------------------------------------------------------------GAGAG-------------------------TTCA---------------TA------------------------------TGCT-----------------------------------ATAACTGTAATTT-CAAT-----------------------------------------------------AATATGCTAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTTTGCATTCTCTC-TATCTCTATCCAT----------------------------------------------------------------------------------------------------------------------T-------------------TGCAGGC-AGTTAAAAGCACAACAAAAAC-------A---AAAATAATAA----T-----------------AA-TAACAAAA---------AGGAAAACAAACAACA-AAAACTTTGC-AC
droGri2 scaffold_15245:7398480-7398664 - ATTGATGAGAACGAAAGAA----------------------------A----GTAAAACAA----TGAGAGTGCTCGAT------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------------------------G--------------------------------------ATAACTGCAATTT-GAAC-----------------------------------------------------AATATGTTGATAA--------------------------------------------AAATTTAAAA----------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTT---------TTTTATCTTTATCTAA-------------------------------------------------------------------------------------------------------------------------------------------TTATAGACAATAACAGCAAATACAGCA------------ATAAGAGAAA----T----------------------ACA----ACTATAAGAAG--AAGAAACAACCGCAAACTTTGT-AC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATTGCCAACACAGAGAGCGGAGT-AATAG----CGAAGATT----GAA----GTTGAAAAA----TGAAACCAATTGATGAAT---GGTATCTTCCA------GA-TACAAGTGTTTTATATTCACTTAAATTACT----------------ATAAGTGTTAA--ATCCTAT---------ATATGGCAACATA---TGTAAAAGTTGAAGACAAGTAAA---------------TA------------------------------T--------------------------------------------------------------CTTATAAATATTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-TCAAAATCTTTTGCAGACTCCCAACGCATGTTACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-CTAG---------GGGA------------------------TTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------A---ATAGTTGGTC----C-------T---------AA-GAA-CT.........................................2111.00110000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-CTA........................................2811.00100000010000000000
......................................ATT----GAA----GTTGAAAAA----TT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17110.09100000010000000000
droSec2
CTTGCCAACACAGAGAGCGGAGT-AATAG----CGAAGATT----GAA----GTTGAAAAA----TGAAACCAATTGATGAAT---GGTATCTTCCA------GA-TACAAGTGTTTTATCTTCACTTTAGTTAGT----------------ATAAGTGTGAA--ATCCTAT---------ATATGGCAACATA---TGTAAAAGTTGAAGACAAGTAAA---------------TA------------------------------T--------------------------------------------------------------ATTATAAATATTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-TCAAAATCTTTTGCAGACTCCCAACGCATGTTACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-CTAG---------GGGA------------------------TTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
ATTGCCAACATAGAGAGCGGAGT-AATAA----CGAAGATT----GAA----GTTGAAAAA----TGAAACCAATTGATGAAT---GGTATCTTCAA------AA-TACAAGTGTTGTGTATTCACTTAAGTTACT----------------ATTACTGTAA-AGATTCTATAC-------ATATGGCAACATA---TGTAAAAAAAGAATACAAGTAAA---------------TA------------------------------T--------------------------------------------------------------CTTATAAGTATTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-TCTAAATCCTTTGCAGACTCCCAACGCATGTTACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-CTAG---------GGGA------------------------TTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTACGCAC-------A---ATAGTTGGTC----....................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAC-------A---ATAGTTGGTC----C-------T---------AA-GAC-T..........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGGTC----C-------T---------AA-GAA-CT.........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TGATGAAT---GGTATCTTCAA------AA-TACAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACATAGAGAGCGGAGT-AATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-C..........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................AAACCAATTGATGAAT---GGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TA------------------------------T--------------------------------------------------------------CTTATAAGTATTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-TCTAAATCC..........................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AACATAGAGAGCGGAGT-A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCCAACATAGAGAGCGGAGT-AATAA----CGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GGAGT-AATAA----CGAAGATT----GAA----GTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGACTCCCAACGCATGTTACGCT..............................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................ATCTTCAA------AA-TACAAGTGTTGTGTATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TCACTTAAGTTACT----------------ATTACTGTAA-AGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-CTAG---------GG............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-------A---ATAGTTGGTC----C-------T---------AA-GAA-CTAG---------GGGA------------------------..2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACGCATGTTACGCAC-------A---..................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
........................AATAA----CGAAGATT----GAA----GTTGAAAAA----TGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CATAGAGAGCGGAGT-AATAA----CGAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-...........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAACGCATGTTACGCAC-------A---ATAGT.............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCTTTGCAGACTC...............................................................................................................1611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................T----------------ATTACTGTAA-AGATTCTATAC-------ATATGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGCAC-------A---ATAGTTGGTC----C-------T---------AA-G..............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCCAACATAGAGAGCGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAACGCATGTTACGCAC-------A---ATAGT.............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................ATCTTCAA------AA-TACAAGTGTTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GA.............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATTGCCAACACAGAGAGCGGAGT-AATAG----CTAAGATT----GAA----GTTGAAAAA----TGAAACCGATTGATGAAT---GGTATCTTCGA------AA-TACAAGTGTTGTGTATTCACATGAGTTACT----------------ATGACTGTTAA--AATAAAT---------TCTTGTTTACATATTTTGTAGAA------------------------------------------------------------------------------------------------------------------------ATGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAATAGTTTAATT---------TAATATTAATTAAA-----------ATAAATTTTCATACC--ATTT----ATATC-----TCAAATA-------------------C-------------------------------------AAAGAATATATCAT--------------------------------------------------------------AAAATT-----------G-----CTATTT-TCTGTATTCATTGCAGACTCCAAACGCATGTTACGCAC-------A---ATAGCTGGTC----C-------T---------AA-GAA-CTAG---------GGGA------------------------TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................GAAAAA----TGAAACCGATTGATGAAT---GGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
.....................GT-AATAG----CTAAGATT----GAA----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-TCTGTATTCATTGCCA...................................................................................................................1990.3331000020
droYak3
ATTGCCAACACAGAGAGCGGAGT-AATAG----CGAAGATT----GAA----GTTGAAAAA----TGAAACCGTTTGATGAAT---GGTATCTTCAA------AA-TACAAGTGTAGTGT--ACATTTGAGTTACT----------------ATAACTGTTAAAAATACTATATAAAGTGTTCTTGTCTACATAATGTGTAAAA------------------------------------------------------------------------------------------------------------------------AATTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGAAATAGTTCAATTGATTTGATCTAATTTTAATTAAA-----------ATAATTTTACGTACC--ATTTACATATATC-----TCGAATA-------------------C-------------------------------------AAAGAAT--ACCTA--------------------------------------------------------------AA---AAA--------TG-----TAATTT-TCTGAATTTATTGCAGACTCCAAACGCATGTTACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-CTAG---------GGGA------------------------TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-------A---ATAGTTGGTC----C-------T---------AA-GA.............................................1911.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATGTTACGCAC-------A---ATAGTTGGTC----....................................................................2511.00100000010000
ATTGCCAACACAGAGAGCGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEug1
ATTGCCAACACAGAGAGTGGAGT-ATCAG----CGAAGAGCAAATGAA----GTTGAAAAT----CGAACCCGATTGATGAATTATTGGATCTTAGG------GATTGCAAGTGTTTTGATTATAGATCAGATACT----------------TT-----------------------------TTGTTTCTATTTTTTTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATA---TG-------GGAAATTGTGATGTTTTTAATCTTGCTTAATAAGGTGTTGAATAAAAAAAAATC----------------------------------------------------------------------------------------------------------------------------------------------------GTCCTTT---------TTCTATATTTTTTTTATCGTCGGATATATTAGAAAATAAT--AATA--ATA--AATATATTTGAAAAGAGAAAGAAAGTTTAAGCTAATTTATACAAGTTTATAGTATTTTTGATTAACTTTCAATTAATTAA-----GATTTT-T--CTCCTTTTTTCAGACTCTAAACGCATGTTACGCAC-------A---ATAGTTGGTC----C-------T---------AA-GAA-CTAG---------GGGA------------------------TTSizeHit CountTotal NormTotal
No Reads
droBia1
ATTGCCAGCACAGAGAGTGGAGT-AATAG----CGAAGAGCGGAAGAA----GCCGAAAAT----CGAAACCAATTGATGAAC---TGTATCTAGGG------GATTACAAGTGTTGTGGTTGCAGTTCAGATACT----------------AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ATTGCCAACACAGAGAGTGGAGT-AAGAG----CGAAGGGCGAAAGAA----GCTGAAAAT----CGAAACCGATTGATGAAC---TGTATCTTGGG------GATTACAAGTGTTGTGACTGCAATTAAGATTCA----------------GA------------TTGTATTC---------------------------------------------AA--------------TGAAAAATATATTGGAATATTTATATGTGATGGGAAATCCTAATTAATTA----------------------------G--------------------------------------------------------------------------------------------------------------------------------TATTTTAATTTTAAATTAGTAATTATCAGCAAAATTT-ATTTTTTTAAATATGTTTGAGTT--------------------------------------------------------------G-----------TT-----AAATTTAT--------------------------------------------------------TTTATT--ATT-A--------------------------------------------------------------TAAATAAA--------AG-----TATTTT-TTTCCTTTCATTGCAGATTCCAAACGCATGTTACGCAC-------A---GTAGTTGGTC----C-------T---------GA-GAT-CTAG---------GGGA------------------------TTSizeHit CountTotal NormTotal
No Reads
droEle1
ATTGCCAACACAGAGAGTGGAGT-AAAAG---GAGAAGAGCGAAAGAA----GTTGGAAAT----TGAAACCGATTGATGAAT---TGTATCTTTGAGTTTGAGATAACAAGTGTTGCT----------AATTACA----------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCTATTCCTTATTTATTGTTAAATAATTTT--------------AAACA--------------------------------------------------------------------------------TA------------------------------ACTGCAATATTTCAATTGCTT-----TATTATTAATTAATTTTTAATTACTAAGTATTTTCGT--T--ATAGACAAATATG-TTGTTCAAATA-----------------TTC-------------------------------------TAATAAT--CCC-T--------------------------------------------------------------ATAATTGA--------TG--------TT-----ATCTTTTTTTCAGACAT-TAACGCATGTAACGCAC-------A---ATAGTTGGTC----C-------T---------AAAAAA-CTAG---------GAGA------------------------TTSizeHit CountTotal NormTotal
No Reads
droRho1
ATTGCCAACACAGAGAGTGGAGT-AAAAG---GCGAAGAGCGAAAGAA----GTTAAAAAT----CGAAACCGATTGATGAAT---TGTATCTTTGG------AATTGCAAGTGA----------CTTTAATTACA----------------ATAAATCATAA--ATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAACAA--------------------------------------------TAATTTGTTACTTTATTTTTAAATTT----TTACCAGTAACATTGTTTTATTTTGAAT--TAATGAGCC--------------------------------------------------------------ATT--------TTT-----CAATTTAA--------------------------------------------------------AATAAT--CTC-T--------------------------------------------------------------TCAATAAA--------TG-----TTTCTTAATTATTTTTTTTGCAGACTCCTAACGCATGTTACGCAC-------A---ACTGTTTGTC----C-------T---------AA-AAA-CTAG---------GAGA------------------------TTSizeHit CountTotal NormTotal
No Reads
droFic1
ATTGCCAACACAGAGAGTGGAGT-AAGAG----CGGAGAGAGAAAAAA----TTTGAAAAT----CAAAAACGATTGATGAAT---TGTATCTTATG------GATTACAAATGTTGTGATTACAA-------------------------------------------------------------------------------------------------------------TG------------------------------GAAA-----------------------------------ATGT---------------TTGAGATCACGAGTGCTAATTTAATATA------AAACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTTTTGCAGACTTTTAACGCATGTTACGCAC-------AATAGTAGTTGGTC----G-------T---------AA-ACA-CTAG---------GGGA------------------------TTSizeHit CountTotal NormTotal
No Reads
droKik1
ATTGCCAGCACAGAGAGTGGAGT-AAAAA----G-AAGAAAAAAAGGA----GGAGAGAAA----TAA-AGTGATTAATGAAT---AGTT-----------------------GTTGTGT--TGCCTT-AG----TATTAATTCATAAATTAATTACAGTAA-GGCTTCA------------------------A----------------------------------------TG-------------------------TGTTA--ACTTTCTAATTAATAAAATTTATTAATTATAGAAAAAAAAT-----------------TAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCCAAAAACCATTTTATTT--------------------------AGTAAATAATAACAA--CTTA-----------AT-----AACAATA---T--TTTTTGTTTTCTC-TA------------------------------------ATAAT--AAC-C-------------------------------------------------------------------------------ATTTATTTTTTCAACAATATTTCTTGCAGACTCGCAACGCATGTAACGCACACACAACA---ATAGTTGGGG----T-------T---------AA-AAA-TTAA---------AGGG--------------TAC-------TTSizeHit CountTotal NormTotal
No Reads
droAna3
ATTGCCAACACAAAGTGTAGAGT-AAAAA----GG-ATAGC--AAGGATATGGCGAAGGAT----TAAATTAAATTCATA----------------------------------------------------------------------------------------------------------ATAAA------------------------------TAAAAAATAATAAA-----------------------------------------------------------------------------------------ATTTTAATTGTAAT---------------------------------------TAAATACTAATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------TTT-TT--TCTATTTTTCAGAT-CTTAATGCATGTTACCCAA-------A---ATAGTCTCCT----C-------T---------AA-CGT-CTAAC--------GGGG------------------------CTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATTGCCAACACAAAGTGTGGAGT-AAAAA----GG-AG--CGCAAGGAT---GTGGCGAATCCGAT-GGGTTGATTGATAAAT---GTTATTATAAG------GATAATTATTGA----------CTTTA---------------------------------------------------------TTAA------------------------------TAAAATAAAATTAA-----------------------------------------------------------------------------------------A-----------------------------------------------TTAATGAATTAATCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-TTTTTATTGTTTTTAGAT-CTTAACGCATGTTACGCAC-------A---ATAATCTCCA----T-------T---------AG-CAT-CTAA---------CGGG------------------------CTSizeHit CountTotal NormTotal
No Reads
dp5
ATTGCCAACACAAAGTGTAGAGT-AGAAA----AGAAGT-----------------------------AACAAACCATTGAAT---GATATTCTGG------------------------------------------------------------------------------------------GTGCCCGAA----------------------------------------TG------------------------------GGTG-----------------------------------GAA---------------ATTATGATTATGAATACCCCCTTTCCAAT------CAATTT-TTTCTCTTTATAAATTATCTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-TTTACACTATCTACAGAATTGAACCGCATGTAGCGCGT-------A---ATAACGGAGC----C-------C---------AA-GAA-CAAA---------AGGAACACCAATTTTA-ACACCATTGGATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATTGCCAACACAAAGTGTAGAGT-AGAAA----AGAAGT-----------------------------AGCAAACCACTGAAT---GATATTCTGG------------------------------------------------------------------------------------------GTGCCGGAA----------------------------------------TG------------------------------GGTG-----------------------------------GAA---------------ATTATGATTATGAATACCCCCTTCCCAAT------CAATTA-TTTCTCTTTATAAATTATCTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-TTTACACTATCTAGAGAATTGAACCGCATGTAGCGCGT-------A---ATAACGGAGC----C-------C---------AA-GAA-CAAA---------AGGAACACCAATTTTA-ACACCATTGGATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droVir3
GTTGCCAACATTAAGAGCGAAAACAAGAG----TGA-------GAGCA----GCGC---------------------CTAAGT---GAGATTCGT--------------------G----------------------------------------------------------------------ATGAG-------------------------TTCAA--------------TT------------------------------GAGA-----------------------------------GTAACTGACATTTTAATT-----------------------------------------------------AATAAGCTAACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---T--TTTGCATTCTCTC-TCT-TTTATCAAC-------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAC---------AGAAGAAGCAC-------A---ATAATAATTACATTATTAACAACAACAACAACAA-GAACA----ACTGTAAA-----AACAAACAACA-CCAA-------TTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................ATTCGT--------------------G----------------------------------------------------------------------ATGAG-------------------------TTCAA--------------TT------------------------------GAGA-----------------------------------GTAACTGACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3320.501000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAC---------AGAAGAAGCAC-------A---AT................................................................................1820.501000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAACAACAACAACAA-GAACA----ACTGTA................................2920.501000000000000000001000000000000000000000000000000000000000000000
.....................AACAAGAG----TGA-------GAGCA----GCGC---------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAA-GAACA----ACTGTAAA-----.........................2420.501000000000000000100000000000000000000000000000000000000000000000
.............................................................................................GT--------------------G----------------------------------------------------------------------ATGAG-------------------------TTCAA--------------TT------------------------------GGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.171000000000001000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAA-GAACA----ACTG..................................21100.101000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAA-GAACA----......................................20200.051000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAA-GAAC...........................................21200.051000000000000000000010000000000000000000000000000000000000000000
droMoj3
GTTCCCAGCATTGAGAGCGAAAGCAGAATTGAGAGAGCGGCGAATTAA----G-----------------------------C---GAGAGTTGA--------------------A----------------------------------------------------------------------GAGAG-------------------------TTCA---------------TA------------------------------TGCT-----------------------------------ATAACTGTAATTT-CAAT-----------------------------------------------------AATATGCTAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTTTGCATTCTCTC-TATCTCTATCCAT----------------------------------------------------------------------------------------------------------------------T-------------------TGCAGGC-AGTTAAAAGCACAACAAAAAC-------A---AAAATAATAA----T-----------------AA-TAACAAAA---------AGGAAAACAAACAACA-AAAACTTTGC-ACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...CCCAGCATTGAGAGCGAAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droGri2
ATTGATGAGAACGAAAGAA----------------------------A----GTAAAACAA----TGAGAGTGCTCGAT------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------------------------G--------------------------------------ATAACTGCAATTT-GAAC-----------------------------------------------------AATATGTTGATAA--------------------------------------------AAATTTAAAA----------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTT---------TTTTATCTTTATCTAA-------------------------------------------------------------------------------------------------------------------------------------------TTATAGACAATAACAGCAAATACAGCA------------ATAAGAGAAA----T----------------------ACA----ACTATAAGAAG--AAGAAACAACCGCAAACTTTGT-ACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:04 AM