ID:

dsi_10829

Coordinate:

3l:7716945-7717003 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7716816_7716944_-]; exon [3l_7716211_7716944_-]; CDS [3l_7717004_7717153_-]; exon [3l_7717004_7717153_-]; intron [3l_7716945_7717003_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------################################################## CTGCCTCTCAATTGGCCCAGATGCGTTTGGCCAGCTGCACGAATATAAATGTGTGTACAACTACAGCATCGAAGTGAACAAAAACTGATGTATAATTATATTTTTGTAGGAGGTTGATGATGAGGACTGTGCAAGCATGCGAAGCAGTTCCCCGTCAAC ************************************************..........((((((((((..(((........)))))))).............)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	M025 embryo	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
....................................................................................................................ATGATGAGGACTGTGCAAGCA......................	21	0	1	1.00	1	0	0	1	0	0	0	0	0
.........................................................................................................GTAGGAGGTTGATGA.......................................	15	0	1	1.00	1	0	1	0	0	0	0	0	0
.........AATTGGCCCAGATGCGTTTGGCCAGC............................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0
...........TTGGCCCAGATGCGTTTGGCC...............................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
..............GCCCAGATGCGTTTGGCCAGC............................................................................................................................	21	0	2	0.50	1	0	0	0	0	1	0	0	0
..........................................................................................................AATGAGGTTGATGATGAGGACT...............................	22	2	2	0.50	1	0	0	0	1	0	0	0	0
...............................CAGCTCCAGGAATATAAA..............................................................................................................	18	2	6	0.17	1	0	0	0	0	0	1	0	0
..................AGAGGCGTTTCGCCAGCGGC.........................................................................................................................	20	3	7	0.14	1	0	0	0	0	0	0	1	0
..............GCCCAGATGCGTTTT..................................................................................................................................	15	1	16	0.06	1	0	0	0	0	0	0	0	1

Anti-sense strand reads

GACGGAGAGTTAACCGGGTCTACGCAAACCGGTCGACGTGCTTATATTTACACACATGTTGATGTCGTAGCTTCACTTGTTTTTGACTACATATTAATATAAAAACATCCTCCAACTACTACTCCTGACACGTTCGTACGCTTCGTCAAGGGGCAGTTG ************************************************..........((((((((((..(((........)))))))).............)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs
..................................................................................................................ACTACTACTATTGACACATTCGT......................	23	3	3	0.33	1	1

Generated: 04/24/2015 at 10:27 AM