ID:

dsi_10819

 Coordinate:

3l:16350548-16350697 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3l_16350078_16350547_+]; exon [3l_16350078_16350547_+]; intron [3l_16350548_16357795_+]

No Repeatable elements found

mature
star
  1. 2l:17809898-17809913 +
  2. 3l:14399413-14399428 -
  3. dsi_10819  3l:16350587-16350602 +
  4. 3l:18426934-18426949 +
  5. 3r:22387111-22387126 -

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCGAAAAAAGCAACACACATTTTACACAGAGTTTGCGAGAATCGAAAAAGGTAAGAATACAAATTCGTGCGAAGGACCTCGGGGATTTGAAGAAGAGGAAGAGCAGTTGAAAACAAATCAATGAATTCTAAATGAAGTCAAATCTATGTGCCAACTTTAATAATTTGTCAAGTGAATATAGAAAAGCTAATTTAGCTGTTACACTTCGAACTTGAAAGATTAAAATGTGATTTAAATTAAATAAAATGCC
*****************************************************************************************.....((.(((....(((((...(((......(((.(((.....))).)))......)))..))))).......))).)).........************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
..............................................................................................................................................................................................TTTAGCTGTTAGACCTGGAAC....................................... 21 3 1 2.00 2 0 2 0 0 0 0 0
...................................................................................................................................................................TTTGTCAAGTGAATA........................................................................ 15 0 1 1.00 1 0 0 1 0 0 0 0
......................TACACAGAGTTTGCGAGAATCGAAAAA......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
........................CACAGAGTTTGCGAGAATCGAAAAAGA....................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0
.........................................................................................................................................................ACTTTAATGAATTGTCAAGT............................................................................. 20 2 2 0.50 1 1 0 0 0 0 0 0
........................................................................................GAAGAAGAGGAAGAGCAGGT.............................................................................................................................................. 20 1 2 0.50 1 0 0 0 1 0 0 0
.........................................................................................................................................................................................................CACTGTGAACTTGAAAGAT.............................. 19 2 3 0.33 1 0 0 0 0 1 0 0
.........................................................................................AAGAAGAGGAAGAGCAGGT.............................................................................................................................................. 19 1 3 0.33 1 0 0 0 1 0 0 0
.........................................................................................AAGAAGAGGAAGAGCA................................................................................................................................................. 16 0 5 0.20 1 1 0 0 0 0 0 0
........................................................................................................................................................GACTTTAATGAATTGTCAAGT............................................................................. 21 3 6 0.17 1 1 0 0 0 0 0 0
............................................................................................AAGTGGAAGAGTAGTTTAAAA......................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 1 0
...........................................................................................................................................................................GTGAATAGAGAAAAGC............................................................... 16 1 9 0.11 1 1 0 0 0 0 0 0
......................................................................GAAGGACTTCGGGTGTTTGA................................................................................................................................................................ 20 3 11 0.09 1 0 0 0 0 1 0 0
.......................................AATCGAAGAAGGTGAGAATC............................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 1
............................................GAAAAGGTAAGAATA............................................................................................................................................................................................... 15 1 18 0.06 1 0 0 0 0 0 0 1
............................................................................................AAGTGGAAGAGTAGTTAAAAA......................................................................................................................................... 21 3 19 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

AGCTTTTTTCGTTGTGTGTAAAATGTGTCTCAAACGCTCTTAGCTTTTTCCATTCTTATGTTTAAGCACGCTTCCTGGAGCCCCTAAACTTCTTCTCCTTCTCGTCAACTTTTGTTTAGTTACTTAAGATTTACTTCAGTTTAGATACACGGTTGAAATTATTAAACAGTTCACTTATATCTTTTCGATTAAATCGACAATGTGAAGCTTGAACTTTCTAATTTTACACTAAATTTAATTTATTTTACGG
************************************************************************.....((.(((....(((((...(((......(((.(((.....))).)))......)))..))))).......))).)).........***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
..........................................................................................TCTTCTCCTTCTCGTCCATT............................................................................................................................................ 20 2 2 0.50 1 1 0 0
............................................................................GGAGTCCCTAAACTT............................................................................................................................................................... 15 1 11 0.09 1 0 1 0
...........................................................................................................................................................................CAGTTATAGCTTGTCGATTA........................................................... 20 3 12 0.08 1 0 0 1

Generated: 04/24/2015 at 04:15 AM