ID:

dsi_10817

Coordinate:

3r:17178940-17179089 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGTATGCCAAGGACGAGCTGTTGCAGCTACTGGCCGCCCCCCACATGCAGGTGAGTGGCAAGCTGGGATGACAAGGAGCGCCCTGCCTTTCTTGTTTACTCTTACTCTGTTGGGCATTTTGTGGCAAGCTGTATTTTGCAATAATCTGGCAATCACCGGGCTTTCTGGTTCTCTTTGTTCGCCTCTGTGGTCATATCAATCTGTGGTCCACTCGAGCCGCCCAATTCGCTTTGGCTTAAGCTTAAACAAA ************************************************.((((((((..((.(((..(((((((((.(((.(((((.....((........))......)))))..((((.(((((......))))).))))(((((......)))))......))).)))))))))..)))..)).))))).)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M024 male body	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR902009 testis
.................................................................................................................................................................................................TATCAATCTGTGGTCCACTCGAGC.................................	24	0	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................TCTGTGGTCATATCAATCTGTG.............................................	22	0	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................TCTTACTCTGTTGGTCATTCTGT................................................................................................................................	23	2	1	1.00	1	1	0	0	0	0	0	0
..............GAGCTGTTGCAGCTACTGGCCGC.....................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	1	0	0	0
............................................................................................................................................................CGGGCGTTCTGGTTCT..............................................................................	16	1	3	0.33	1	1	0	0	0	0	0	0
.................................................................................................................................................................TTTCTGGTCCTCTTTGA........................................................................	17	2	20	0.15	3	0	2	0	0	0	0	1
.......................................................................................................................................................CTCACCGGGCTTTCT....................................................................................	15	1	8	0.13	1	0	0	0	0	1	0	0
................................................................................................TACTCTGACTCTGTT...........................................................................................................................................	15	1	9	0.11	1	0	0	0	0	0	1	0
...............................................................................................................GGGCGTTTAGTGGCATGCT........................................................................................................................	19	3	10	0.10	1	1	0	0	0	0	0	0
..................................................................................................................................................................TTCTGGTCCTCTTTG.........................................................................	15	1	15	0.07	1	0	0	0	0	1	0	0
...................................................................................................................................................................TCTGGTTGTCTATGTTC......................................................................	17	2	20	0.05	1	0	0	0	0	0	1	0

Anti-sense strand reads

TCATACGGTTCCTGCTCGACAACGTCGATGACCGGCGGGGGGTGTACGTCCACTCACCGTTCGACCCTACTGTTCCTCGCGGGACGGAAAGAACAAATGAGAATGAGACAACCCGTAAAACACCGTTCGACATAAAACGTTATTAGACCGTTAGTGGCCCGAAAGACCAAGAGAAACAAGCGGAGACACCAGTATAGTTAGACACCAGGTGAGCTCGGCGGGTTAAGCGAAACCGAATTCGAATTTGTTT ************************************************.((((((((..((.(((..(((((((((.(((.(((((.....((........))......)))))..((((.(((((......))))).))))(((((......)))))......))).)))))))))..)))..)).))))).)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.....................................................................................................................................AAAACGTAATTAGACCGT...................................................................................................	18	1	2	0.50	1	1	0	0
.......................................................................................................................................AACGTAATTAGACCGT...................................................................................................	16	1	8	0.25	2	2	0	0
................................................................................................................................................................GAAAGAGCGAGAGAAACAAGGG....................................................................	22	3	4	0.25	1	0	1	0
.........................CGATGTCCGCCGGGGG.................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	1

Generated: 04/23/2015 at 02:06 PM