ID:

dsi_10792

 Coordinate:

2l:22492732-22492964 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.7 -15.1 -15.1

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_10792  2l:22492834-22492854 -
  2. dsi_9156  2r:1322181-1322201 -
star
  1. dsi_10792  2l:22492747-22492764 -
  2. dsi_9156  2r:1322094-1322111 -

Sense Strand Reads

GACAAAAACACGCCTAGCTACTGACCACATTCCAATTCTGTACGGAAAAGGTAAGCAAAGCGCAATGGTTTCTCGGCTATAGCAGTCTCTCCACAGTCAGTTTCTTCACCAGCCATTCCTTTCTCTTCTTACTTTTTGTAATTAACTGTCTATGTGTCGTGGTTTCCCGATTGTTTTCTATAACAACCGCCATTGTTCTGTTGCCACTCCACTCCACTTTGACGGCCCTTCTCTTCCTGCCTGCCGCACCTGTGTTGAACTCGGCGCCGATGTCGTACCGTAGATGACAAGAAGCTCAGCCCCGATCAAGGTAGTCACCTGCCTAACCCATTT
****************************************************************************************************************************************************************..........(((((......))))).((((...((((................(((..((.((((................))))))...)))..))))..))))..***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M053
female body
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
...........................CATTCCAATTCTGTACGGA............................................................................................................................................................................................................................................................................................... 19 0 2 1.50 3 3 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................GTAGTCACCTGCCTAACC..... 18 0 2 1.50 3 0 3 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................GTAGATGACAAGAAGCTCAGCC................................ 22 0 2 1.50 3 0 3 0 0 0 0 0 0 0
................................................................................................................................................................GGTTTCCCGATTGTTTTCTAT........................................................................................................................................................ 21 0 2 1.00 2 0 0 2 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CGTACCGTAGATGACAAGAAGCTC.................................... 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TGTGTTGAACTCGGCGCC................................................................. 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TGTGTTGAACTCGGCGCCGATGTCGTA........................................................ 27 0 2 0.50 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................GATGACAAGAAGCTCAGCCCCGATCAAG....................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................ATGACAAGAAGCTCAGCCCC.............................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................GTTGAACTCGGCGCCGATGT............................................................ 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................GTTGAACTCGGCGCCGAT.............................................................. 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................CCTGCCTGCCGCACCTGTGTT............................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................CTGCCGCACCTGTGTTGAACT........................................................................ 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................TGAACTCGGCGCCGATGT............................................................ 18 0 2 0.50 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................GATGACAAGAAGCTCAGCCCCG............................. 22 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................GCCGATGTCGTACCGTAGATGACAAGA......................................... 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0
......................GACCACATTCCAATTCTGTACGGAAAAG........................................................................................................................................................................................................................................................................................... 28 0 2 0.50 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................TGCCTGCCGCACCCGTGTTGAACTCG...................................................................... 26 1 2 0.50 1 0 0 0 0 0 0 0 1 0
...................................................................................................................TTCCTTTCTCTTCTTACTTTTTGTAAT............................................................................................................................................................................................... 27 0 2 0.50 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................TTCCTGCCAGCCGCACCA.................................................................................. 18 2 17 0.35 6 0 0 0 0 0 0 6 0 0
...........................................................................................................................................................................................................................................CCTGCCTGCCGCACCA.................................................................................. 16 1 6 0.17 1 0 0 0 0 0 0 1 0 0
................................................................................................................................................TCTGTCTGTGTGTCGTCGTTT........................................................................................................................................................................ 21 3 11 0.09 1 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................................................................TCCGCCCGGATCAAGG...................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................GTGGTGAACTCGGCGCA................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

CTGTTTTTGTGCGGATCGATGACTGGTGTAAGGTTAAGACATGCCTTTTCCATTCGTTTCGCGTTACCAAAGAGCCGATATCGTCAGAGAGGTGTCAGTCAAAGAAGTGGTCGGTAAGGAAAGAGAAGAATGAAAAACATTAATTGACAGATACACAGCACCAAAGGGCTAACAAAAGATATTGTTGGCGGTAACAAGACAACGGTGAGGTGAGGTGAAACTGCCGGGAAGAGAAGGACGGACGGCGTGGACACAACTTGAGCCGCGGCTACAGCATGGCATCTACTGTTCTTCGAGTCGGGGCTAGTTCCATCAGTGGACGGATTGGGTAAA
*****************************************************************..........(((((......))))).((((...((((................(((..((.((((................))))))...)))..))))..))))..**************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
............................................................................................................GGATGGTAAGGAAAGAGAAG............................................................................................................................................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0 0
...................................................................................................CAAAGAAATCGTCTGTAAGGAA.................................................................................................................................................................................................................... 22 3 6 0.17 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................AGTCGGGGCTAGTTAC...................... 16 1 6 0.17 1 1 0 0 0 0 0 0
..............................................................................TAACGTGAGAGAGGTTTCAG........................................................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................TAGTCGGGGCTAGTT........................ 15 1 7 0.14 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................AGCTAGTTCCAACAGTG............... 17 2 8 0.13 1 0 0 1 0 0 0 0
................................................................................CCGTCAGAGAGGTCTCAGTA......................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................GACTGACGGCTTGTACACA.............................................................................. 19 3 20 0.10 2 0 0 0 2 0 0 0
........................................................................................................................................................................................................................................................................................................GTCGGGGCTAATTGCA..................... 16 2 20 0.10 2 0 0 2 0 0 0 0
...............................................................................................CAGTCTAAGAAGTCGTCG............................................................................................................................................................................................................................ 18 2 11 0.09 1 0 0 0 1 0 0 0
................................................................................................AGTCAGTGAAGTGGTCG............................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................................................GCCGGGGCGAGTTCCATG................... 18 3 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................CTACAGCATGACATCTTG............................................... 18 3 20 0.05 1 0 0 0 0 0 0 1
................................................................................................................................................AGACAGACACACAGCAGCAA......................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0
..............................................................................................................TCATTATGGAAAGAGAAGA............................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:22492682-22493014 - dsi_10792 GACAAAAACACGCCTAGCTACTGACCACATTCCAATTCTGTACGGAAAAGGTAAGCAA---------------------AGCGC-A-------------ATGGTTT----CT---CGG-------------------------------------------CTATAGCAGTCTCTCCACAGTCAG--------------TTTCTTCACC-AGCCAT-TCCTTTC-----TCTTCTTACTTTTTGT----------------------AATTAA------CTGTC-------------TATGTGTCGTGGTTTCCCGATTGTTTT-------CT--------ATAACAAC-CGCCATT-----------------------------GTTCTGTTGCC----------------------ACTCCACTCCA------CTT----------------------------------------TGACGGCCCTTCTCTTCCTGC----C----------TGCCGCACCTGTGTTG-------------AACTCGGCGCCGATGTCGTAC-CGTAGATGACAAGAAGCTCAGCCCCGATCAAGGTAGTC-ACCTGCCTAA-CCCAT-T-------------T
droSec2 scaffold_6:105672-106002 + GACAAAAACACGCCTAGCTACTGACCACATTCCAATTCTGTACGGAAAAGGTAAGCAA---------------------AG--C-A-------------ATGGTTT----CT---CGG-------------------------------------------CTATAGCAGTCTCTCCACAGTCAG--------------TTTCTTCACC-AGCCAT-TCCTTTC-----TCTTCTTACTTTTTGT----------------------AATTAA------CTGTC-------------TATGTGTCGTGGTTTCCCGATTGTTTT-------CT--------ATAACAAC-CGCCATT-----------------------------GTTCTGTTGCC----------------------ACTCCACTCCA------CTT----------------------------------------TGACGGCCCTTCTCTTCCTGC----C----------TGCCGCACCTGTGTTG-------------AACTCGGCGCCGATGTCGTAC-CGTAGATGACAAGAAGCTCAGCCCCGATCAAGGTAGTC-ACCTGACTAA-CCCAT-T-------------T
dm3 chr3RHet:2477636-2477961 + GACAAAAACACGCCTAGCCACAGACCACATTCCAATTCTGTACGGAAAAGGTAAGCAC---------------------AG--C-A-------------ATGGTTT----AT---CGG-------------------------------------------CTTTAGCAGTCTCTCCACAGTCAG--------------TTTCTTCACC-AGCCAT-TCCTTTC-----TCTTCTTACTTTTTGT----------------------AATTAA------CTGTC-------------TATGTGTCGTGGTTGACCGATTGTTTT-------CT--------ATAACAAC-CGCCATT-----------------------------GTCCTGTTGCC----------------------A----------CTC-CACTT----------------------------------------TGACGGCCCTTCTACTTCTGC----C----------CGCCGCAACTGTGTTA-------------AACTCGGCGCCGATGTCGTAC-CGTAGATGACAAGAAGCTCTGCACCGATCAAGGTAGTC-ACCTGACTAA-CCCAT-T-------------T
droEre2 scaffold_4770:334487-334798 + GACAAAGACACGTCTAGCTACTGATCACATTCCAATTCTTTACGGAAAAGGTAAGCAC---------------------AT--C-T-------------ATGGTTT----CT---CGA-------------------------------------------CTATCGCAGTCTTTCCACAGTCAG--------------TTTCTTCACC-AGCCAT-TCCTTTC-----TCTTCTTACTTTTTGT----------------------AATTAA------CTGTC-------------TATGTGTCGT--------------TTT-------TT--------ATAACAAC-CGCCATT-----------------------------CTTCTGTTGCC----------------------A----------CTC-CACTC----------------------------------------TGACGGTCTTTCTCTTCCTGC----C----------TGCTGCACCTGTGGTG-------------AATTCGGCGTCGATGTCGTAC-CGTAGATGACAAGAATCTCAGCCCCGATCAAGGTAGTC-ACCTGACTAA-CCCAT-A-------------T
droYak3 3R:327622-327980 + GACAAAAACACGCCTAGCTACTGATCACATTCCTATTCTTTATGGAAAAGGTAAGCGT--ATGGCTTACCATAGGTAAAAC--C-T-------------ATGGTTT----CT---CGA-------------------------------------------CTATCACAGTCTTTCCACAGTCAG--------------ATTCTTCACC-AGTCAT-TCCCTTC-----TCTTCTTTCTTTTTGT----------------------TATTAA------CTACGTCGTCTATACGTCTATACGTCGTTTTTGACCGATTGCTTT-------CT--------ATAATAAC-CACCATT-----------------------------CTTCTGTTGCC----------------------A----------CTC-CACTC----------------------------------------TGACGGTCCTTCTCTTCCTGC----C----------TGCTGCACCTGTGTTG-------------AACTCGGCGTCGATGTCGTAC-CGTAGATGAGAAGAAGCTCAGCCCCGATCAAGGTAGTCCACCTGACCAA-CCCAT-A-------------T
droEug1 scf7180000409540:3903-4212 + AACAAAGACTCGCCTAGCAACTGACCACATACCCATTCTTTACGGAAAAGGTAAGA------------------------------------------------TT----CT---TAA-------------------------------------------ATATGGCAGCCTA-CCATATTCT---------------------------GCCCTATCCTTTG-----CATTTTATCTTTATGT----------------------AAATAA------CTATG-------------TATATGTTATGTATGTCCGATTGTTTT-------TT--------ATAACAAT-CACGACT---------------------CTTGATTTTTTCTGTTGCC----------------------A----------CCC--CCTC----------------------------------------CGACGGACCTTTTTGTCCTGC----C----------TGATGCAACTATGACG-------------TTCCTTGGGTGGATGTCGAAC-CGTAGATGACAACAAGCTAAGCCTCGATCAAGGTAGTC-CTCTGCCTAA-CCCAT-A-------------T
droBia1 scf7180000301256:49218-49516 + GACAAAGACCCGCCTTGCCACGGATCACATTCCCATTCTTTACGGAAAAGGTAAGTCA---------------------AC--C-T-------------TTGGGCC----AC---CAG-------------------------------------------CTATCTCAGAGCTCGCAAATGCAG--------------TTTCTTCACC-AGCCATATCCTTTG-----TTTTCTATCTATATGT----------------------AAATAA------CTGTC-------------CGTGTGTCG---------GTTTGTTCT-------AC--------ATGCCAAC-CACCA---------------------------------------------------------------------------------CAT----------------------------------------TGAACTCTCTTCCCATCCTGC----G----------TGCTGCAACTATGCCG-------------CTCTTGGCGTCGATGTCGAAC-AGCAGATGACAAGAAGCTAAACCCCGATCAAGGTAGTC-ACCTGACTAA-CCCGT-A-------------C
droTak1 scf7180000410621:30727-31026 - GACAAAGACGCGTCTTGCCACAGACCACATTCCAATTCTGTACGGAAAAGGTAAGCTG---------------------TC--G-A-------------ATGAGTC----TT---CAA-------------------------------------------CTATTGCTGCTTCCGCAAATGCAG--------------TTTCTTTACC-AACCATATCCTTTG-----TCTTCTATCTATATGT----------------------AAATAA------CTGTC-------------TGGGTGTCGTGTGTATCGGTTTGTTAC-------TT--------ATAACAAC-CGCCA---------------------------------------------------------------------------------CTT----------------------------------------TGAACTATCTTCCCATCCTGC----C----------TGCTGCAACTGTGCCG-------------C--------TCGATGTCGAAC-AGCAGACGACAAGAAACTAGGCCCAGATCAAGGTAGTC-ACTTGACTAG-CCCGT-A-------------T
droEle1 scf7180000491278:33388-33701 + GACAAAGACACGTCTTGCCACAGACCACATCCCAATTCTATACGGAAAAGGTAAGTGG---------------------AC--C-A-------------GAGGGTC----TT---CGT-------------------------------------------TTATCGCTGCTCTCCCAAATGCAG--------------TTCCTTCAAT-AGGCATATCTTTTG-----TCTTCTATCTTTATGT----------------------AATTAA------CTGTC-------------TGTGTG---------T-----------TCGTTAC----TGCGTAATAACCAA-CT---------------------ACAATCTTGAACTCTCCTGTTGTC----------------------A----------CCCAC-----------------------------------------------------CTTTCGTCCTAC----C----------TGCTGCAACTATGCCG-------------CTCTTGGCGTCGATGTCGAAC-CAAAGATGACAAGAAGCAAAACCTCGATCAAGGTAGTC-ACCTGACTAG-CCCGT-T-------------T
droRho1 scf7180000775729:4002-4315 + GACAAAGACGCGCCTGGCCACGGACCACATCCCAATTCTTTACGGAAAAGGTAAGAGG---------------------AC--C-A-------------GTGGGTC----TC---CGT-------------------------------------------CTATCGCTGCTCCCCCACATGCAG--------------TTTCTTCACC-AGCTATGTCCTTTG-----TCTTCTATCTTTATGT----------------------AAATAA------CTATC-------------TGTGTTTCGTGTGCGC-----------TCGCTAC----TGCGT---------------AT-----------------------------CTCCTGTTGTC----------------------A----------CCCACCCTC----------------------------------------CGACGGTCCTTCCCGACCTAC----C----------TGCTGAAACTGTGCCG-------------CTCTTGGCGTCGATGTCGAAC-CGTAGATGACAAGAAGCAAAGCCTCGATCAAGGTAGTC-ACCTGACTAA-CCCGT-T-------------T
droFic1 scf7180000454068:15357-15658 - GACGAAGACTCGCTTAGCCACAGACCACATTCCAATTCTATACGGAAAAGGTAAGTGG---------------------AA--C-T-------------GAGTGTC----CC---CGT-------------------------------------------GTACCACTGGCTTCCTCCATGCAG--------------TTTCTTCACT-ATCCATATCCTTTG-----TTTTCTATCTTTATGT----------------------AAATAA------CTGTC-------------TGTGTGTCGTGTGTGT-----------CCGTTTC----TTCGTAATAACCAC-CGCCA-------------------------------------------------------------------------------------------------------------------------------CGGTCCTTCCTGTCCTGC----C----------CGATGCTACTGTGCCG-------------CTCTCGGCGTCGATGCCATAC-CGTAGACGACAAGAAACCAAACCCTGAACAAGGTAGTC-ACCTGACTGG-CCCCT-A-------------T
droKik1 scf7180000302297:45826-46134 - AACGAAGACTCGACTGGCCACGGACCACATTCCAATTCTCTACGGAAAAGGCAAGCGG---------------------AC--T-T-------------TTGGCTC----TC---C----------------------------------------------------------------------------ACCCACTTTT---------AATTCATCCTTTG-----TCTTCTATCTATTTGT----------------------AAATAA------CTATC-------------TATATGTTGCGTTTGT-----------TCGCTCC----CTCGCAATTCTTAC-CGTCGC---TTCCTGCCGTCCCGGCCCTTTTGACCTGTTTCGTTGCT----------------------A----------TCCA-CCTC----------------------------------------CGACGTACCTTC-------------------------------CCTGTGCCA-------------CTCCTGGCGCCGATGTCGAAC-CGTAGATGACAAGAAGCAGAGCTCCGATAAAGGTAGTC-AGCTGACTTA-CCCGT-T-------------T
droAna3 scaffold_12911:1984024-1984327 + dan_394 GACTAAGACTCGCTTGGCCACAGACCACATTCCTATTTTGTATGGAAAAGGTAAGCGG---------------------GC--C-T-------------CCGTTTC----TT---TG-------------------------------------------------------TCCTCAATGTTAGT-TCCCCAT-----CCACTTCACG-AACAACGTCCTTTG-----TCTTCTATCTCTATGT----------------------AAATAA------CCGTA-------------TTTGTACCGGTCGTCT-----------TCGT-------TCCGAAATAACCA--CGCTGCT-----------------------------------------------------------------CTCCTCCACCCGCCCTC----------------------------------------CGATGATCCTTTCTGCCCCGC----T----------TGCTGCGACTG-------------------------GGTCGATGTCGAAC-CGAAGATGACAAAAAGCAGAGTTCCGAACAAGGTAGTC-AATTGAATTA-CCCAT-T-------------G
droBip1 scf7180000396714:1067631-1067930 - GACTAAGACTCGTCTGGCCACGGACCACATTCCCATTTTATACGGAAAAGGTAAGCGG---------------------GC--C-G-------------TTTCTTT----GTTCTCAA-------------------------------------------C------------------TCTAGTGTCCCCATA-----CACTTCACA-AA--ACATCCTTTG-----TCTTCTATCTATATGT----------------------AAATAA------CCGTG-------------TTTGTATCGGTCGTCT-----------TCGT-------TCCGAAATAACCA--TGCTGCT-----------------------------------------------------------------CTCCTCCACCTGCCCTC----------------------------------------CGATGATCCCTTCTGCCCCGC----T----------TGCTGCGACTG-------------------------GGTCGATGTCGAAC-CAAAGATGACAAGAAGCAGAGCTCTGAACAAGGTAGTC-AATTGAATTA-CCCAT-T-------------G
dp5 2:24971250-24971610 - GACAAAGACTCGTCTGGCCACGGATCATATTCCCATTCTATATGGCAAAGGTAATTGG---------------------TC--T-A---------------------------------------TGACTTGGTCTTGTCGTGCCACTGCCCTACCGTTCTCTGTCGCTGTCA-----------G------CACACACCTTTCCTCATG-AGCAATATCCTTTGTCTTGTCTTCTATCTCTATGT----------------------AAATAA------CTGTC-------------TGT--GTCAAATGTGC-----------TCGTTCC----TTCGTAATAACCAA-CGCCGCTCGTTCCTGCCG-----ACACTCTTG---------------AACTCTGTGTGTATCGGTACCA-----------CCCACTCTC----------------------------------------CGA---CTC-TTCCGCCCTGT----C----------TG-------------------------------TGGTGCCGATGCCGACC-CGTAGATGACAAGAAGCTGACCTCCGATCAAGGTAGTC-CACTGACTTG-CCCCTTA-------------A
droPer2 scaffold_6:269940-270299 - GACAAAGACTCGTCTGGCCACGGATCATATTCCCATTCTATATGGCAAAGGTAATTGG---------------------TC--T-A---------------------------------------TGACTTGGACTTGTTGTGCCACTGCCCTACCGT-CTCTGTCGCTGTCA-----------G------CACACACCTTTCCTCATG-AGCAATATCCTTTGTCTTGTCTTCTATCTCTATGT----------------------AAATAA------CTGTC-------------TGT--GTCAAATGTGC-----------TCGTTCC----TTCGTAATAACCAA-CGCCGCTCGTTCCTGCCG-----ACACTCTTG---------------AACTCTGTGTGTATCGGTACCA-----------CCCACTCTC----------------------------------------CGA---CTC-TTCCGCCCTGT----C----------TG-------------------------------TGGTGCCGATGCCGACC-CGTAGATGACAAGAAGCTGACCTCCGATCAAGGTAGTC-CACTGACTTG-CCCCTTA-------------A
droWil2 scf2_1100000004943:13604071-13604390 - GACAAAGACTCGTCTGGCCACCGATCATATTCCCATTTTGTATGGCAAAGGTAAGTTT---------------------TT--T-C-------------------------CCCTTAATTTTCTGTGACTTTTT-------------------------------------------------CC--------------TCTCTTCATC-CACGACGTGTC---CTTTGTCTTCTACCTTTCTCTCTCTATTTATCCTTCTCTATGTAAATAA------CTGTA-------------TTTGTGTTGCCTGTGT-----------CCGTTGC----T-----------------------------------------------------------------------------------C----------TGC-TCCTCTGACACACTCTTCTACACTATTG--------------------------------TTATGTCCACCTATCGCCGATGTCAACATTTG----------------------TCTTGATGATGTTTTCC-TTTAGATGACAAGACGCCAATCTCTGACCAAGGTAGTC---TTAAATGA-CCCAA-T-------------C
droVir3 scaffold_13047:13614928-13615301 + dvi_16839 GACAAAGACCCGCTTGGCCACGGATCACATTCCCATTCTATACGGCAAAGGTAAGTAATACAGAC-----ATAGCA---------------------AAAAGAGTT----AT---CT---------------------------------------------TCTCGTAGACTCTCT---TCTAG--------------TCTTTTTATATAACGATATCTTTTG-----TCTTTTTTTTTC--GA---------------TATGTGTACATACTTGCATCTGTC-------------TGT--GTTATACGTGT-----------TCGTTTTTTATTTCCAAATAACCAACTGTCGC----CCCTGCCG-----GCACTCTGA---------------AAC-----------------------------------------------TTTTCAACACTTTCGCCCCA--CTGCATCCTTTGGCGACCCTTC-CTCCTCGT----T----------TGCCGTATCTCTGCTGA------------CCCTCTGTGTTCATTTCCAACGTTTAGATGACAAGAAGCTGAGCTCCGATCAAGGTAGTC-AA----CTAA-TCTAA-A-------------T
droMoj3 scaffold_6540:10861075-10861460 + GACAAAGACCCGGTTGGCCACGGATCACATTCCCATTCTGTACGGCAAAGGTAAGCGAT-CTGAC-----CCAACA---------------------AATGGAATTGTCTTT---CTG--------------------------------------------TACGGTCTTCTATATATCTTCTG--------------TA-TTTCACACAACGATATCTCTTG-----TCTTTTATCTCAC------------------TACATGTACATACTCGTATCTGTC-------------TGT--GTTATGTGTGT-----------TCGTTCTCTTTTTCAAAATAACCAACTGTCTC---TCCCTGACG-----GCACTCTGA---------------AAC-----------------------------------------------TTTTCAACACTATCGCCCCAAAATACATCCTTTGGCGACCCTTC-TTCCTCGT----T----------TGCCGCATCTCTGCTGA------------TCCTCTGTGTTAATTTCCAACGTGTAGATGACAAGCAACTGAGCTCCGATCAAGGTAGTC-AACTAATCTA-AATCT-G-------------T
droGri2 scaffold_15074:401514-401897 - GACAAGGACCCGTCTGGCTGGTGATCACATTCCCATCCTATACGGCAAAGGTAAGTGA---------------------CGGAAGAAAGATATTCTGAAGGGAGACATCTAC---TAG--------------------TAG-------G----------------CTCT-ACTCTCT---TTCAT--------------TCTATTCATATAACAAT-TCTCTTG-----TTTCTTATCTTAATGT------------------ATGTACGTTCTCGTATCTGTC-------------TGTGTCATA-CTAT--------GTT-------------TTCCAAATAACCAATTGTCGT---TCCCTGCCG-----TCTCTCTGA---------------AAT-----------------------------------------------TCTTCAACACTATCGCCCCA--CTGCATTCTTTGGCGCCCCTTC-CTCCTCGT----T----------T-------CACTGCTGCCCCACTGTGTTAC------------TTGCAACG-TGTAGATGACAAGAAGCAGAGCTCCGATCAAGGTAGTC-AACTAGTCTACACCAA-ATCCTATTAAACTCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GACAAAAACACGCCTAGCTACTGACCACATTCCAATTCTGTACGGAAAAGGTAAGCAA---------------------AGCGC-A-------------ATGGTTT----CT---CGG-------------------------------------------CTATAGCAGTCTCTCCACAGTCAG--------------TTTCTTCACC-AGCCAT-TCCTTTC-----TCTTCTTACTTTTTGT----------------------AATTAA------CTGTC-------------TATGTGTCGTGGTTTCCCGATTGTTTT-------CT--------ATAACAAC-CGCCATT-----------------------------GTTCTGTTGCC----------------------ACTCCACTCCA------CTT----------------------------------------TGACGGCCCTTCTCTTCCTGC----C----------TGCCGCACCTGTGTTG-------------AACTCGGCGCCGATGTCGTAC-CGTAGATGACAAGAAGCTCAGCCCCGATCAAGGTAGTC-ACCTGCCTAA-CCCAT-T-------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................CATTCCAATTCTGTACGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.50303000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTC-ACCTGCCTAA-CC...................1821.50300300000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGACAAGAAGCTCAGCC................................................2221.50300300000000000000
...................................................................................................................................................................................................................................................................................................................GGTTTCCCGATTGTTTT-------CT--------AT......................................................................................................................................................................................................................................................................................................2121.00200000000200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAC-CGTAGATGACAAGAAGCTC....................................................2420.50100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTG-------------AACTCGGCGCC..................................................................................1820.50101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTG-------------AACTCGGCGCCGATGTCGTA.........................................................................2720.50100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAGAAGCTCAGCCCCGATCAAG.......................................2820.50101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAAGAAGCTCAGCCCC..............................................2020.50101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-------------AACTCGGCGCCGATGT.............................................................................2020.50101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-------------AACTCGGCGCCGAT...............................................................................1820.50101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGC----C----------TGCCGCACCTGTGTT...........................................................................................................2120.50101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------TGCCGCACCTGTGTTG-------------AACT.........................................................................................2120.50110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------------AACTCGGCGCCGATGT.............................................................................1820.50100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAGAAGCTCAGCCCCG.............................................2220.50110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATGTCGTAC-CGTAGATGACAAGA.........................................................2720.50100000000100000000
......................GACCACATTCCAATTCTGTACGGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100010000000000000
.......................................................................................................................................................................................................................T-TCCTTTC-----TCTTCTTACTTTTTGT----------------------AAT...............................................................................................................................................................................................................................................................................................................................................................................2720.50100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGC----C----------TGCCGCACCA................................................................................................................1660.17100000000010000000
droSec2
GACAAAAACACGCCTAGCTACTGACCACATTCCAATTCTGTACGGAAAAGGTAAGCAA---------------------AG--C-A-------------ATGGTTT----CT---CGG-------------------------------------------CTATAGCAGTCTCTCCACAGTCAG--------------TTTCTTCACC-AGCCAT-TCCTTTC-----TCTTCTTACTTTTTGT----------------------AATTAA------CTGTC-------------TATGTGTCGTGGTTTCCCGATTGTTTT-------CT--------ATAACAAC-CGCCATT-----------------------------GTTCTGTTGCC----------------------ACTCCACTCCA------CTT----------------------------------------TGACGGCCCTTCTCTTCCTGC----C----------TGCCGCACCTGTGTTG-------------AACTCGGCGCCGATGTCGTAC-CGTAGATGACAAGAAGCTCAGCCCCGATCAAGGTAGTC-ACCTGACTAA-CCCAT-T-------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCTGTGTTG-------------AACTCGGC.....................................................................................2111.0011000
..........................ACATTCCAATTCTGTACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
dm3
GACAAAAACACGCCTAGCCACAGACCACATTCCAATTCTGTACGGAAAAGGTAAGCAC---------------------AG--C-A-------------ATGGTTT----AT---CGG-------------------------------------------CTTTAGCAGTCTCTCCACAGTCAG--------------TTTCTTCACC-AGCCAT-TCCTTTC-----TCTTCTTACTTTTTGT----------------------AATTAA------CTGTC-------------TATGTGTCGTGGTTGACCGATTGTTTT-------CT--------ATAACAAC-CGCCATT-----------------------------GTCCTGTTGCC----------------------A----------CTC-CACTT----------------------------------------TGACGGCCCTTCTACTTCTGC----C----------CGCCGCAACTGTGTTA-------------AACTCGGCGCCGATGTCGTAC-CGTAGATGACAAGAAGCTCTGCACCGATCAAGGTAGTC-ACCTGACTAA-CCCAT-T-------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................TGTC-------------TATGTGTCGTGGTTGACCGATT..............................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000
....................................................................................................................................................................TAGCAGTCTCTCCACAGTCAG--------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TTTAGCAGTCTCTCCACAGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TTAA------CTGTC-------------TATGTGTCGTGG........................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................T-----------------------------GTCCTGTTGCC----------------------A----------CTC-CACTT----------------------------------------TGACGG........................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCGCCGATGTCGTAC-CGTAGATGA..............................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATGTCGTAC-CGTAGATGACAAGA.........................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-CGTAGATGACAAGAAGCTCTGCACC..............................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TAA------CTGTC-------------TATGTGTCGTGGTTGACCGC................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCTGCACCGATCAAGGTAGT..................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGTTA-------------AACTCGGCGCCGAT...............................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGTCGTAC-CGTAGATGA..............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AGCCACAGACCACATTCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TGTGTCGTGGTTGACCGATTGT............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TACGGAAAAGGTAAGCAC---------------------AG--C-A-------------ATGGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TCTGTACGGAAAAGGTAAGCAC---------------------AG--C-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................TTCCAATTCTGTACGGAAAAGGTAAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGCC----------------------A----------CTC-CACTT----------------------------------------TGACGGCC......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GTTT----AT---CGG-------------------------------------------CTTTAGCAGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ACCACATTCCAATTCTGTACGGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................CACAGTCAG--------------TTTCTTCACC-AGCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTA-------------AACTCGGCGCCGATGTCGTA.........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................C-A-------------ATGGTTT----AT---CGG-------------------------------------------CTTTAGCAGTCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ACCACATTCCAATTCTGTACGGAAAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TAA------CTGTC-------------TATGTGTCGTGG........................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................A-------------ATGGTTT----AT---CGG-------------------------------------------CTTTAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TAACAAC-CGCCATT-----------------------------GTCCTGT....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................A------CTGTC-------------TATGTGTCGTGGTTG.....................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGATCAAGGTAGTC-ACCTGACTAA-.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TCCACAGTCAG--------------TTTCTTCACC-AGCCAT-....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................G--C-A-------------ATGGTTT----AT---CGG-------------------------------------------CTTTAGCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTAC-CGTAGATGACAAGAAGC......................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGAAGCTCTGCACCGATCAAG.......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................C-CACTT----------------------------------------TGACGGCCCTTCTACTTCTGC----C----------..........................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTGCC----------------------A----------CTC-CACTT----------------------------------------TGACGG........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TTTTGT----------------------AATTAA------CTGTC-------------TATGTGTCGT..........................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CCAATTCTGTACGGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GCCACAGACCACATTCCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-CGTAGATGACAAGAAGCT.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCACCGATCAAGGTAGTC-ACCTGAC.........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAGCAC---------------------AG--C-A-------------ATGGTTT----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TTCTTCACC-AGCCAT-TCCTTTC-----TCT.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AATTCTGTACGGAAAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC----C----------CGCCGCAACTGTGTTA-------------AACTC........................................................................................2511.0010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................C-A-------------ATGGTTT----AT---CGG-------------------------------------------CTTTAGCAGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAC-CGTAGATGACAAGAAGCTCT...................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCTGCACCGATCAAG.......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGCCGATGTCGTAC-CGTAG..................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TGTTTT-------CT--------ATAACAAC-CGCCATT-----------------------------GTCC.......................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................T----------------------AATTAA------CTGTC-------------TATGTGTCGTGGTT......................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................ATGGTTT----AT---CGG-------------------------------------------CTTTAGCAGTCTCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-------------AACTCGGCGCCGATGTCGT..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TACTTTTTGT----------------------AATTAA------CTGTC-------------TATGTGTC............................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................T----AT---CGG-------------------------------------------CTTTAGCAGTCTCTCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GACAAAGACACGTCTAGCTACTGATCACATTCCAATTCTTTACGGAAAAGGTAAGCAC---------------------AT--C-T-------------ATGGTTT----CT---CGA-------------------------------------------CTATCGCAGTCTTTCCACAGTCAG--------------TTTCTTCACC-AGCCAT-TCCTTTC-----TCTTCTTACTTTTTGT----------------------AATTAA------CTGTC-------------TATGTGTCGT--------------TTT-------TT--------ATAACAAC-CGCCATT-----------------------------CTTCTGTTGCC----------------------A----------CTC-CACTC----------------------------------------TGACGGTCTTTCTCTTCCTGC----C----------TGCTGCACCTGTGGTG-------------AATTCGGCGTCGATGTCGTAC-CGTAGATGACAAGAATCTCAGCCCCGATCAAGGTAGTC-ACCTGACTAA-CCCAT-A-------------TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAGCCCCGATCAAGGTAGC..................................2311.0010100000
droYak3
GACAAAAACACGCCTAGCTACTGATCACATTCCTATTCTTTATGGAAAAGGTAAGCGT--ATGGCTTACCATAGGTAAAAC--C-T-------------ATGGTTT----CT---CGA-------------------------------------------CTATCACAGTCTTTCCACAGTCAG--------------ATTCTTCACC-AGTCAT-TCCCTTC-----TCTTCTTTCTTTTTGT----------------------TATTAA------CTACGTCGTCTATACGTCTATACGTCGTTTTTGACCGATTGCTTT-------CT--------ATAATAAC-CACCATT-----------------------------CTTCTGTTGCC----------------------A----------CTC-CACTC----------------------------------------TGACGGTCCTTCTCTTCCTGC----C----------TGCTGCACCTGTGTTG-------------AACTCGGCGTCGATGTCGTAC-CGTAGATGAGAAGAAGCTCAGCCCCGATCAAGGTAGTCCACCTGACCAA-CCCAT-A-------------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..CAAAAACACGCCTAGCTACTGATCACATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATGTCGTAC-CGTAGATGA..............................................................2211.00100000010000
droEug1
AACAAAGACTCGCCTAGCAACTGACCACATACCCATTCTTTACGGAAAAGGTAAGA------------------------------------------------TT----CT---TAA-------------------------------------------ATATGGCAGCCTA-CCATATTCT---------------------------GCCCTATCCTTTG-----CATTTTATCTTTATGT----------------------AAATAA------CTATG-------------TATATGTTATGTATGTCCGATTGTTTT-------TT--------ATAACAAT-CACGACT---------------------CTTGATTTTTTCTGTTGCC----------------------A----------CCC--CCTC----------------------------------------CGACGGACCTTTTTGTCCTGC----C----------TGATGCAACTATGACG-------------TTCCTTGGGTGGATGTCGAAC-CGTAGATGACAACAAGCTAAGCCTCGATCAAGGTAGTC-CTCTGCCTAA-CCCAT-A-------------TSizeHit CountTotal NormTotal
No Reads
droBia1
GACAAAGACCCGCCTTGCCACGGATCACATTCCCATTCTTTACGGAAAAGGTAAGTCA---------------------AC--C-T-------------TTGGGCC----AC---CAG-------------------------------------------CTATCTCAGAGCTCGCAAATGCAG--------------TTTCTTCACC-AGCCATATCCTTTG-----TTTTCTATCTATATGT----------------------AAATAA------CTGTC-------------CGTGTGTCG---------GTTTGTTCT-------AC--------ATGCCAAC-CACCA---------------------------------------------------------------------------------CAT----------------------------------------TGAACTCTCTTCCCATCCTGC----G----------TGCTGCAACTATGCCG-------------CTCTTGGCGTCGATGTCGAAC-AGCAGATGACAAGAAGCTAAACCCCGATCAAGGTAGTC-ACCTGACTAA-CCCGT-A-------------CSizeHit CountTotal NormTotal
No Reads
droTak1
GACAAAGACGCGTCTTGCCACAGACCACATTCCAATTCTGTACGGAAAAGGTAAGCTG---------------------TC--G-A-------------ATGAGTC----TT---CAA-------------------------------------------CTATTGCTGCTTCCGCAAATGCAG--------------TTTCTTTACC-AACCATATCCTTTG-----TCTTCTATCTATATGT----------------------AAATAA------CTGTC-------------TGGGTGTCGTGTGTATCGGTTTGTTAC-------TT--------ATAACAAC-CGCCA---------------------------------------------------------------------------------CTT----------------------------------------TGAACTATCTTCCCATCCTGC----C----------TGCTGCAACTGTGCCG-------------C--------TCGATGTCGAAC-AGCAGACGACAAGAAACTAGGCCCAGATCAAGGTAGTC-ACTTGACTAG-CCCGT-A-------------TSizeHit CountTotal NormTotal
No Reads
droEle1
GACAAAGACACGTCTTGCCACAGACCACATCCCAATTCTATACGGAAAAGGTAAGTGG---------------------AC--C-A-------------GAGGGTC----TT---CGT-------------------------------------------TTATCGCTGCTCTCCCAAATGCAG--------------TTCCTTCAAT-AGGCATATCTTTTG-----TCTTCTATCTTTATGT----------------------AATTAA------CTGTC-------------TGTGTG---------T-----------TCGTTAC----TGCGTAATAACCAA-CT---------------------ACAATCTTGAACTCTCCTGTTGTC----------------------A----------CCCAC-----------------------------------------------------CTTTCGTCCTAC----C----------TGCTGCAACTATGCCG-------------CTCTTGGCGTCGATGTCGAAC-CAAAGATGACAAGAAGCAAAACCTCGATCAAGGTAGTC-ACCTGACTAG-CCCGT-T-------------TSizeHit CountTotal NormTotal
No Reads
droRho1
GACAAAGACGCGCCTGGCCACGGACCACATCCCAATTCTTTACGGAAAAGGTAAGAGG---------------------AC--C-A-------------GTGGGTC----TC---CGT-------------------------------------------CTATCGCTGCTCCCCCACATGCAG--------------TTTCTTCACC-AGCTATGTCCTTTG-----TCTTCTATCTTTATGT----------------------AAATAA------CTATC-------------TGTGTTTCGTGTGCGC-----------TCGCTAC----TGCGT---------------AT-----------------------------CTCCTGTTGTC----------------------A----------CCCACCCTC----------------------------------------CGACGGTCCTTCCCGACCTAC----C----------TGCTGAAACTGTGCCG-------------CTCTTGGCGTCGATGTCGAAC-CGTAGATGACAAGAAGCAAAGCCTCGATCAAGGTAGTC-ACCTGACTAA-CCCGT-T-------------TSizeHit CountTotal NormTotal
No Reads
droFic1
GACGAAGACTCGCTTAGCCACAGACCACATTCCAATTCTATACGGAAAAGGTAAGTGG---------------------AA--C-T-------------GAGTGTC----CC---CGT-------------------------------------------GTACCACTGGCTTCCTCCATGCAG--------------TTTCTTCACT-ATCCATATCCTTTG-----TTTTCTATCTTTATGT----------------------AAATAA------CTGTC-------------TGTGTGTCGTGTGTGT-----------CCGTTTC----TTCGTAATAACCAC-CGCCA-------------------------------------------------------------------------------------------------------------------------------CGGTCCTTCCTGTCCTGC----C----------CGATGCTACTGTGCCG-------------CTCTCGGCGTCGATGCCATAC-CGTAGACGACAAGAAACCAAACCCTGAACAAGGTAGTC-ACCTGACTGG-CCCCT-A-------------TSizeHit CountTotal NormTotal
No Reads
droKik1
AACGAAGACTCGACTGGCCACGGACCACATTCCAATTCTCTACGGAAAAGGCAAGCGG---------------------AC--T-T-------------TTGGCTC----TC---C----------------------------------------------------------------------------ACCCACTTTT---------AATTCATCCTTTG-----TCTTCTATCTATTTGT----------------------AAATAA------CTATC-------------TATATGTTGCGTTTGT-----------TCGCTCC----CTCGCAATTCTTAC-CGTCGC---TTCCTGCCGTCCCGGCCCTTTTGACCTGTTTCGTTGCT----------------------A----------TCCA-CCTC----------------------------------------CGACGTACCTTC-------------------------------CCTGTGCCA-------------CTCCTGGCGCCGATGTCGAAC-CGTAGATGACAAGAAGCAGAGCTCCGATAAAGGTAGTC-AGCTGACTTA-CCCGT-T-------------TSizeHit CountTotal NormTotal
No Reads
droAna3
GACTAAGACTCGCTTGGCCACAGACCACATTCCTATTTTGTATGGAAAAGGTAAGCGG---------------------GC--C-T-------------CCGTTTC----TT---TG-------------------------------------------------------TCCTCAATGTTAGT-TCCCCAT-----CCACTTCACG-AACAACGTCCTTTG-----TCTTCTATCTCTATGT----------------------AAATAA------CCGTA-------------TTTGTACCGGTCGTCT-----------TCGT-------TCCGAAATAACCA--CGCTGCT-----------------------------------------------------------------CTCCTCCACCCGCCCTC----------------------------------------CGATGATCCTTTCTGCCCCGC----T----------TGCTGCGACTG-------------------------GGTCGATGTCGAAC-CGAAGATGACAAAAAGCAGAGTTCCGAACAAGGTAGTC-AATTGAATTA-CCCAT-T-------------GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGAACAAGGTAGT..................................1912.002000020
......GACTCGCTTGGCCACAGACCACATTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..CTAAGACTCGCTTGGCCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
GACTAAGACTCGTCTGGCCACGGACCACATTCCCATTTTATACGGAAAAGGTAAGCGG---------------------GC--C-G-------------TTTCTTT----GTTCTCAA-------------------------------------------C------------------TCTAGTGTCCCCATA-----CACTTCACA-AA--ACATCCTTTG-----TCTTCTATCTATATGT----------------------AAATAA------CCGTG-------------TTTGTATCGGTCGTCT-----------TCGT-------TCCGAAATAACCA--TGCTGCT-----------------------------------------------------------------CTCCTCCACCTGCCCTC----------------------------------------CGATGATCCCTTCTGCCCCGC----T----------TGCTGCGACTG-------------------------GGTCGATGTCGAAC-CAAAGATGACAAGAAGCAGAGCTCTGAACAAGGTAGTC-AATTGAATTA-CCCAT-T-------------GSizeHit CountTotal NormTotal
No Reads
dp5
GACAAAGACTCGTCTGGCCACGGATCATATTCCCATTCTATATGGCAAAGGTAATTGG---------------------TC--T-A---------------------------------------TGACTTGGTCTTGTCGTGCCACTGCCCTACCGTTCTCTGTCGCTGTCA-----------G------CACACACCTTTCCTCATG-AGCAATATCCTTTGTCTTGTCTTCTATCTCTATGT----------------------AAATAA------CTGTC-------------TGT--GTCAAATGTGC-----------TCGTTCC----TTCGTAATAACCAA-CGCCGCTCGTTCCTGCCG-----ACACTCTTG---------------AACTCTGTGTGTATCGGTACCA-----------CCCACTCTC----------------------------------------CGA---CTC-TTCCGCCCTGT----C----------TG-------------------------------TGGTGCCGATGCCGACC-CGTAGATGACAAGAAGCTGACCTCCGATCAAGGTAGTC-CACTGACTTG-CCCCTTA-------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................GTTCTCTGTCGCTGTCA-----------G------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
...........GTCTGGCCACGGATCATATTCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
........CTCGTCTGGCCACGGATCATATTCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
GACAAAGACTCGTCTGGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......GACTCGTCTGGCCACGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........CGTCTGGCCACGGATCATATTCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...................................................................................................................................................................................................CACCTTTCCTCATG-AGCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................ACTCTTG---------------AACTCTGTGTGTATCG................................................................................................................................................................................................................................2311.0010100000000
GACAAAGACTCGTCTGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....AAGACTCGTCTGGCCACGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGACC-CGTAGATGACAA...........................................................1911.0010000100000
droPer2
GACAAAGACTCGTCTGGCCACGGATCATATTCCCATTCTATATGGCAAAGGTAATTGG---------------------TC--T-A---------------------------------------TGACTTGGACTTGTTGTGCCACTGCCCTACCGT-CTCTGTCGCTGTCA-----------G------CACACACCTTTCCTCATG-AGCAATATCCTTTGTCTTGTCTTCTATCTCTATGT----------------------AAATAA------CTGTC-------------TGT--GTCAAATGTGC-----------TCGTTCC----TTCGTAATAACCAA-CGCCGCTCGTTCCTGCCG-----ACACTCTTG---------------AACTCTGTGTGTATCGGTACCA-----------CCCACTCTC----------------------------------------CGA---CTC-TTCCGCCCTGT----C----------TG-------------------------------TGGTGCCGATGCCGACC-CGTAGATGACAAGAAGCTGACCTCCGATCAAGGTAGTC-CACTGACTTG-CCCCTTA-------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GACAAAGACTCGTCTGGCCACCGATCATATTCCCATTTTGTATGGCAAAGGTAAGTTT---------------------TT--T-C-------------------------CCCTTAATTTTCTGTGACTTTTT-------------------------------------------------CC--------------TCTCTTCATC-CACGACGTGTC---CTTTGTCTTCTACCTTTCTCTCTCTATTTATCCTTCTCTATGTAAATAA------CTGTA-------------TTTGTGTTGCCTGTGT-----------CCGTTGC----T-----------------------------------------------------------------------------------C----------TGC-TCCTCTGACACACTCTTCTACACTATTG--------------------------------TTATGTCCACCTATCGCCGATGTCAACATTTG----------------------TCTTGATGATGTTTTCC-TTTAGATGACAAGACGCCAATCTCTGACCAAGGTAGTC---TTAAATGA-CCCAA-T-------------CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...AAAGACTCGTCTGGCCACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.00421100
..................CACCGATCATATTCCCATTTTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
......................GATCATATTCCCATTTTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
..CAAAGACTCGTCTGGCCACCGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCTGACCAAGGTAGTC---..............................2011.00100100
...............................................................................................................................................................................................................................................................................AA------CTGTA-------------TTTGTGTTGCCTGTGT-----------CC.......................................................................................................................................................................................................................................................................................................................2511.00100100
droVir3
GACAAAGACCCGCTTGGCCACGGATCACATTCCCATTCTATACGGCAAAGGTAAGTAATACAGAC-----ATAGCA---------------------AAAAGAGTT----AT---CT---------------------------------------------TCTCGTAGACTCTCT---TCTAG--------------TCTTTTTATATAACGATATCTTTTG-----TCTTTTTTTTTC--GA---------------TATGTGTACATACTTGCATCTGTC-------------TGT--GTTATACGTGT-----------TCGTTTTTTATTTCCAAATAACCAACTGTCGC----CCCTGCCG-----GCACTCTGA---------------AAC-----------------------------------------------TTTTCAACACTTTCGCCCCA--CTGCATCCTTTGGCGACCCTTC-CTCCTCGT----T----------TGCCGTATCTCTGCTGA------------CCCTCTGTGTTCATTTCCAACGTTTAGATGACAAGAAGCTGAGCTCCGATCAAGGTAGTC-AA----CTAA-TCTAA-A-------------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...AAAGACCCGCTTGGCCACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGCTCCGATCAAGGT.....................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAGAAGCTGAGCTCCG.............................................2211.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
GACAAAGACCCGGTTGGCCACGGATCACATTCCCATTCTGTACGGCAAAGGTAAGCGAT-CTGAC-----CCAACA---------------------AATGGAATTGTCTTT---CTG--------------------------------------------TACGGTCTTCTATATATCTTCTG--------------TA-TTTCACACAACGATATCTCTTG-----TCTTTTATCTCAC------------------TACATGTACATACTCGTATCTGTC-------------TGT--GTTATGTGTGT-----------TCGTTCTCTTTTTCAAAATAACCAACTGTCTC---TCCCTGACG-----GCACTCTGA---------------AAC-----------------------------------------------TTTTCAACACTATCGCCCCAAAATACATCCTTTGGCGACCCTTC-TTCCTCGT----T----------TGCCGCATCTCTGCTGA------------TCCTCTGTGTTAATTTCCAACGTGTAGATGACAAGCAACTGAGCTCCGATCAAGGTAGTC-AACTAATCTA-AATCT-G-------------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCCTTTGGCGACCCTTC-TTCCT............................................................................................................................................2711.001000001
.ACAAAGACCCGGTTGGCCACGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
GACAAGGACCCGTCTGGCTGGTGATCACATTCCCATCCTATACGGCAAAGGTAAGTGA---------------------CGGAAGAAAGATATTCTGAAGGGAGACATCTAC---TAG--------------------TAG-------G----------------CTCT-ACTCTCT---TTCAT--------------TCTATTCATATAACAAT-TCTCTTG-----TTTCTTATCTTAATGT------------------ATGTACGTTCTCGTATCTGTC-------------TGTGTCATA-CTAT--------GTT-------------TTCCAAATAACCAATTGTCGT---TCCCTGCCG-----TCTCTCTGA---------------AAT-----------------------------------------------TCTTCAACACTATCGCCCCA--CTGCATTCTTTGGCGCCCCTTC-CTCCTCGT----T----------T-------CACTGCTGCCCCACTGTGTTAC------------TTGCAACG-TGTAGATGACAAGAAGCAGAGCTCCGATCAAGGTAGTC-AACTAGTCTACACCAA-ATCCTATTAAACTCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:42 AM