dsi_10789

exon [2l_5800654_5800801_-]; CDS [2l_5800654_5800801_-]; CDS [2l_5799406_5800498_-]; exon [2l_5799218_5800498_-]; intron [2l_5800499_5800653_-]

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CAGGAGCAGAACCAAAGGCGTGATGGCCAGGAGGTAGCCAATGCACTCAGGTAAGTTGGAAATACGGGGTATATAACGTTTCTTCAAAACCGGTTTCGGTATGATATCGGTTCTACCTGAGAAATCCGAAGAGATTATATCTTGTAATCAATACATAGAGAAAGATTTTTCTTACGCAGATTTATGAGCACTTTCACAATTCCAGGACAATTCTGAGCTACAACGCCAGTGTTAACCTCTATATGTTCTTTGGCG ************************************************.....((((((.(((((((((((....((((((((..(((((((.((.....)).)))))))......((....)).)))))))))))))))))))(((.......((((((....))))))......)))...((((....))))...))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M053 female body	GSM343915 embryo	M025 embryo	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
..........................................................................................................................................................................................................CAGGACAATTCTGAGCTACAACGCCAGT.........................	28	0	1	3.00	3	3	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CAGGACAATTCTGAGCTACAACGC.............................	24	0	1	1.00	1	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GACAATTCTGAGCTACAACGCC............................	22	0	1	1.00	1	0	1	0	0	0	0	0	0
..........................CCAGGAGGTAGCCAATGCACT................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................ATTCCAGGACAATTCTGAGCT....................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CAGGACAATTCTGAGCTACAACGCCAGG.........................	28	1	1	1.00	1	1	0	0	0	0	0	0	0
.AGGAGCAGAACCAAAGGCGT..........................................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0
.................................................................................................................................................................AAGATTTTTCTTACGCAGATTTATG.....................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0
..................CGTGATGGCCAGGAGGTAGCCAAT.....................................................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0
..................................................................................................................................................ATCAATACTCAGGGAAAGATTTT......................................................................................	23	3	1	1.00	1	0	0	1	0	0	0	0	0
.AGGAGCAGAACCAAAGGCGTGATGGC....................................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0
.............................................CTAAGGTAAGTTGGAAATTCGG............................................................................................................................................................................................	22	2	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................ACTCAGGACAATTCTGAGCTACAACGCC............................	28	3	1	1.00	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................TTTCACAAGTCCTGGACA..............................................	18	2	3	0.33	1	1	0	0	0	0	0	0	0
................................................................CGGGGTATATAGAGTTTCT............................................................................................................................................................................	19	2	6	0.17	1	0	0	1	0	0	0	0	0
.......................................................................TATAAGGTTTAGTCAAAACC....................................................................................................................................................................	20	3	6	0.17	1	0	0	0	0	0	0	1	0
..............................................................................................TTTGGTATGTAATCGGTTCTA............................................................................................................................................	21	3	7	0.14	1	0	0	0	0	0	1	0	0
.................................................................TGGGTATATAGCGTTTCT............................................................................................................................................................................	18	2	13	0.08	1	0	0	1	0	0	0	0	0
.................................................GGCAAGTTGGAAATA...............................................................................................................................................................................................	15	1	18	0.06	1	0	0	0	0	0	0	0	1
................................................................................................................CTACCTGAGAAGCTCGAA.............................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	1	0	0

GTCCTCGTCTTGGTTTCCGCACTACCGGTCCTCCATCGGTTACGTGAGTCCATTCAACCTTTATGCCCCATATATTGCAAAGAAGTTTTGGCCAAAGCCATACTATAGCCAAGATGGACTCTTTAGGCTTCTCTAATATAGAACATTAGTTATGTATCTCTTTCTAAAAAGAATGCGTCTAAATACTCGTGAAAGTGTTAAGGTCCTGTTAAGACTCGATGTTGCGGTCACAATTGGAGATATACAAGAAACCGC ************************************************.....((((((.(((((((((((....((((((((..(((((((.((.....)).)))))))......((....)).)))))))))))))))))))(((.......((((((....))))))......)))...((((....))))...))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M025 embryo	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	M023 head
...................................................................................................................................................................................................................AGACTCGATGGTGCGG............................	16	1	1	2.00	2	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TCCTGTTAAGACTCGATG..................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0
..............................................................................................................................................................................GCGACTAAATACTCGTACAAGTGTT........................................................	25	3	1	1.00	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................AGACTCGATGTTGGGG............................	16	1	14	0.57	8	7	0	1	0	0	0	0	0
............................................................................................................................AGGCTCCTCTTTTATAGAACA..............................................................................................................	21	3	2	0.50	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................GACTCGATGTTGGGG............................	15	1	19	0.42	8	8	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATACTCGATGTTGGGG............................	16	2	20	0.40	8	8	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CGACTCGATGTAGCGG............................	16	2	20	0.25	5	2	0	0	2	0	1	0	0
........................................................................................................ATAGGCAAGATGAACTCTAT...................................................................................................................................	20	3	4	0.25	1	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................AGACTCGATGTAGCGG............................	16	1	16	0.19	3	1	0	0	2	0	0	0	0
...................................................................................................................................................................................................................AGACTCGATGTCGCG.............................	15	1	6	0.17	1	1	0	0	0	0	0	0	0
...................................................................................................................GGACTCTCTAGGCTT.............................................................................................................................	15	1	9	0.11	1	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................GACTCGATGTGGCGG............................	15	1	10	0.10	1	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................GACTCGATGTTGCCG............................	15	1	10	0.10	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CTCGATGTAGGGGACACAA......................	19	3	12	0.08	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................GACTCGATGGTGCGG............................	15	1	12	0.08	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGGTACCAAATGGAGATA.............	19	3	15	0.07	1	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................AGACTCGATGTTGGG.............................	15	1	17	0.06	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................AGACTCGATGTAGCG.............................	15	1	20	0.05	1	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................GGTTAGACTCGATGTTGGGG............................	20	3	20	0.05	1	1	0	0	0	0	0	0	0
............................................................................CCAACGAAGTTATGGCCA.................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	1
...................................................................................................................................................................................................................AGACTCGATGCTGGGG............................	16	2	20	0.05	1	1	0	0	0	0	0	0	0
...............................................................................................AGCCATACTATCCCC.................................................................................................................................................	15	2	20	0.05	1	1	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:5800449-5800703 -	dsi_10789	CAGGAGCAGAACCAAAGGCGTGATGGCCAGG-AGGTAGCCAATGCACTCAGGTAA-----GTT-------GGAAA---TACG---GGGTA----------------------------------------------------------T-----------------------------------------------------------------ATAACGTTTCTTCAAAACCGGTTTCGGTATGATATCGGTTCTACCTGA------GAAATCCGAAGAGATTATATCTTGTAATCAATA-CATAGAGA------------------AAGATT-TTTCTTACGCAGA----TTTATGAGCACT----------------------------------------------------T---TC-------ACAATTCCAGGACAATTCTGAGCTACAACGCCAGTGTTAACCTCTATATGTTCTTTGGCG
droSec2	scaffold_5:4075894-4076146 -		CAGGAGCAGAACCAAAGGCGTGATGGCCAGG-AGGTAGCCAATGCACTAAGGTAA-----GTT-------GGAAA---TACG---GGGT-----------------------------------------------------------------------------------------------------------------------------ATAAGGTTTCTTCAAAACCGGTTTCGGTATGATATCGGTTCTACCTGA------GAAATTCGAAGAGATTATATCTTGTAATCAATA-CATAGAAA------------------GAGATT-TTTCTTACGCAGA----TTTATGAGCATT----------------------------------------------------T---TG-------ACAATTCCAGGACAATTCTGAGCTACAACGCCAGTGTTAACCTCTATATGTTCTTTGGCG
dm3	chr2L:6004805-6005055 -		CAGGAGCAGAACCAAAGGCGTGATGGCCAGG-AGGTAGCCAATGCACTAAGGTAT-----GTT-------GGAAA---TACG---GGGT-----------------------------------------------------------------------------------------------------------------------------ATAAGGTTTCTTCAAAACCGGTTTCGGTATGATATCGGTTCTACCTGA------GAAGTTTGAAGAGATT--ATCTTGTAATCTTAA-CATAGAGA------------------GAGATT-TTTCTTACCCAGA----TTTATGAGCATT----------------------------------------------------T---TC-------ACATTTCCAGGACAATTCTGAGCTACAACGCTAGTGTTAACCTCTATATGTTCTTTGGCG
droEre2	scaffold_4929:6095663-6095913 -		CAGGAGCAGAACCAAAGGCGTGATGGCCAGG-AGGTGGCCAATGCGTTAAGGTAACATAAGTT-------GAGAA---T-----------------------------------------------------------------------------------------------------------------------------------------AAGGTTACTTCGAAACCGGTTTCGGCCTGATTTCGGTTCTACCTGAAATTGTGAAATTCGAAGAGATT--ATCTTGTAAACTATA-CATAGATA-------------------AGATT-TTTCTTACAATGA----TTTATGAGCA-T----------------------------------------------------T---TG-------ACAATTCCAGGACAATTCTGAGCTACAACGCCAGCGTTAACCTGTATATGTTCTTCGGCG
droYak3	2L:13189023-13189270 +		CAGGAGCAGAACCAAAGGCGTGATGGCCAGG-AGGTGGCCAATGCGTTAAGGTAA-----GTG-------GAAAA---TACG---GTGT-----------------------------------------------------------------------------------------------------------------------------AGAAGATTACTTCGAAACCGGTTTCGGGATGATTTCGGTTCTACCTGAAGTTAAGAAATTCGAAGGGATA--ATCTTGTAAGCTATT-CAG----------------------------TATTCACAACAAAGA----CTTATGAGCATT----------------------------------------------------T---AC-------ACAATTCCAGGACAATTCTGAGCTACAACGCCAGTGTTAACCTCTATATGTTCTTCGGCG
droEug1	scf7180000409676:576793-576952 +		CAGGAGCAGAACCAAAGGCGTGATGGCCAAG-AGGTGGCCAATGCGTTAAAGTAA-----ATATC-----TTG-------------------------------------------------------------------------------------------------------------------------------------------GGA-------AATAAAAAA--------------------------------------A----------AAT----------------------------------------------------------------------TCAAA------------------------------AA--------------CAACT-------TTTCTCATAT---CCGATTGCAGGACAATCCTTAGCTATAACGCCAGTGTCAACCTCTACATGTTTTTCGGCG
droBia1	scf7180000302402:9991333-9991561 -		ACCGAACCC-ATGGCCAACGTGAGCACCCGATCGATTACTTCCACTTTTATGTAA-----GTT-------CAAGT---TTTG---GGTT----------------------------------------------------------CTGCTTTGTAATTAAAATTCTTGCCCTCTAATTTGTTTCGA-AAATTGTTTAT--G------------------------------------------------------------------------------------------------AT-TATAAGGA------------------GTGCCT-TTACAAACTAAG-------------------------------TT-ACTTATAAA-----------------A----ACA-T---TT-------TACCTTCCAGAAACATGCTGGACAACGGTGCCAGTGTCAACTTCTACATGTTCTACGGCG
droTak1	scf7180000415970:3183-3258 +		A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACGTATCTT----------------------------------------------------T---TA-------ATGATTCCAGGACAATTCTCAGCTACAACGCCAGTGTCAACCTATACATGTTCTTTGGCG
droEle1	scf7180000490399:29659-29718 -		CAGGAGCAAAACCAAAGGCGTGATGGCCAAG-AGGTAGCCGATGCTTTAAGGTGA-----GTT-------AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000776554:12982-13072 +		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTACTAGTA----CTCAAGAGTAAA------------------------------------TTT-------------G---AA-------ATGATTCCAGGACGATCCTTAGCTACAACGCCAGTGTCAATCTATACATGTTCTTCGGCG
droFic1	scf7180000453813:35415-35725 +		CAGGAGCAAAACCAGAGGCGCGATGGCCAAG-AGGTGGCCAATGCGTTAAGGTAA-----GTT-------AAAAC---TTCG---GGGTCCGTAATCAACAATAAACAATCACCACTGCCAAATGGTGCAAATTCATTTTTTAAGTCTAGTATTATATTATATTTCCCTACTGTATTTTTTTTTTTGGTTATGTGTTCAT--A-----AGAGCGA-------AATGAAAGA--------------------------------------C----------AAT-TAA------------GT-TAATAAAGCTGGCATTGCACTGTGAA-------TTT--------------AATAAGCGTATT----------------------------------------------------T---TT-------TCACTCACAGGACGATCCTTACATACAACGCGAGTGTCAACCTGTACATGTTCTTCGGCG
droKik1	scf7180000302468:64405-64647 -		CAGGAGCAAAACCAACGACGGGATGGCCAGG-AGGTGGCCAATGCTCTGAAGTAA-----GTC-------TAGCT---TA-----------------------------------------------------------------------------AATAATTTTAATGCCAATGAAATTTTTTCAA-AAGATGCGGCAAAAATAAT------TTAACGTCACTTT------------------------------CTCGAGA-------------------------TTGCAACCATTATTATTCTAA------------------AAAGCC-TGTCTTACTCAC--------------CAT----------------------------------------------------T---TA---TCGAACAATTCCAGAACCATTCTTAGTTACAACGCCAGTGTCAACCTCTACATGTTCTTTGGTG
droAna3	scaffold_12916:11418579-11418752 -		CAGGAGCAGAACCAAAGGCGAGATGGCCAGG-TGGTAGCTGATGCATTGAAGTGA-----GTTTAGTTCTAAACGAACTACGCCCGGCT-----------------------------------------------------------------------------------------------------------------------------ATAAG------------------------------------------------------------------------------------------------------------------------------------AGTCTAG--------------------TT-CATAGCAAA-----------------A----CCTTC---TC-------TTTACTACAGAACCATTCTCAGCTATAATGCGAGCGTAAACTTATACATGTTCTTCGGTG
droBip1	scf7180000396572:1088076-1088235 -		CAAGAGCAGAACCAACGACGAGATGGCCAGG-AGGTAGCCGATGCATTGAGGTGA-----CTT-------TTG-------------------------------------------------------------------------------------------------------------------------------------------GTA-------ATCCCAAAAC------------------------------------------------CATTCTAG------------------------------------------------------------------------------------------TT-TCTAACAAA-----------------T----CCATT---TC-------TTCTTTCCAGAACCATTCTCAGCTACAATGCCAGCGTTAACTTGTACATGTTCTTCGGTG
dp5	4_group1:270049-270205 +		CAGGAGATGAATCAGCGACGCGATGGTCAAG-TGGTGGCCGATGCCTTGAAGTGA-----GTG-------ATA-------------------------------------------------------------------------------------------------------------------------------------------GTG-------CT---------------------------------------------------------------------------------------------------------------TTTCTTATGGATATTGATCCAACTAATTT----------------------------------------------------C---TG-------ATCCTTTTAGGACCATTCTGAGCTACAATGCCAGCGTCAATCTGTACATGTTCTTTGGAG
droPer2	scaffold_1:265203-265359 +		CAGGAGATGAATCAGCGACGCGATGGTCAAG-TGGTGGCCGATGCCTTGAAGTGG-----GTG-------ATA-------------------------------------------------------------------------------------------------------------------------------------------GTG-------CT---------------------------------------------------------------------------------------------------------------TTTCTTATGGATGTTGATCCAACTAATTT----------------------------------------------------C---TG-------ATCCTTTTAGGACCATTCTGAGCTACAATGCCAGCGTCAATCTGTACATGTTCTTTGGCG
droWil2	scf2_1100000004521:7955635-7955802 +		CAAGAAGAGAATCAAAGACGCGATGGTCAGG-TTGTAGCCGATGCTTTGAAGTAT-----G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCTCTATGCCTTTAAACATTCTCAAGTG-ACTGAAATT--------------CTAAT-------TCCTTTTGCT---TAAACTTTAGAACCATTCTTAGTTACAATGCAAGTGTCAATTTGTACATGTTCTTTGGCG
droVir3	scaffold_12963:3301353-3301521 -	dvi_10306	CAAGAGACGAATCAGCGACGCGACGGTCAGG-TGGTGGCCAACGCCTTGAAGTAA-----TAT-------TAA-------------------------------------------------------------------------------------------------------------------------------------------GGAAACAG--------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATTAATATTTAATTGTGCACTAACAATTGTTCCACT---TA-------CCACATTTAGGACCATACTCAGCTACAATGCCAGCGTTAATCTGTACATGTTCTTTGGCG
droMoj3	scaffold_6500:13666086-13666254 -		CAGGAGATGAATCAGCGACGTGATCCGCAGG-AAGTGGCCAGCGCTTTAAAGTAC-----CTT-------AAAAA---AA--------------------------------------------------------------------------------------------------------------------------------------------TTATATTAGAATTTCTATCGGAATAA------------------------------------------------------------------------------------------------------------------------------------CTTAATAATAAT----------------------CAACT---TC-------TCCCTTTCAGGACCATACTCAGCTACAATGCCAGCGTCAATCTATACATGTTCTTTGGCG
droGri2	scaffold_15252:2881482-2881633 -		CAAGAGATGAATCAGCGACGCGATGGAAAGG-AGGTGGCCGACGCTCTAAAGTAT-----GTT-------TTGAA---TAAA---G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAAATATATT---------------------CTAAT-----------------G-GTTTCA--------------CTTATTTCAGGAAGATACTCAGCTATGGTGCCAGCGTTAATCTCTACATGTTCTTTGGTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CAGGAGCAGAACCAAAGGCGTGATGGCCAGG-AGGTAGCCAATGCACTCAGGTAA-----GTT-------GGAAA---TACG---GGGTA----------------------------------------------------------T-----------------------------------------------------------------ATAACGTTTCTTCAAAACCGGTTTCGGTATGATATCGGTTCTACCTGA------GAAATCCGAAGAGATTATATCTTGTAATCAATA-CATAGAGA------------------AAGATT-TTTCTTACGCAGA----TTTATGAGCACT----------------------------------------------------T---TC-------ACAATTCCAGGACAATTCTGAGCTACAACGCCAGTGTTAACCTCTATATGTTCTTTGGCG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACAATTCTGAGCTACAACGCCAGT.........................	28	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACAATTCTGAGCTACAACGC.............................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATTCTGAGCTACAACGCC............................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CCAGG-AGGTAGCCAATGCACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGACAATTCTGAGCT....................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACAATTCTGAGCTACAACGCCAGG.........................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AGGAGCAGAACCAAAGGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AAGATT-TTTCTTACGCAGA----TTTATG...................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CGTGATGGCCAGG-AGGTAGCCAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.AGGAGCAGAACCAAAGGCGTGATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CAGGAGCAGAACCAAAGGCGTGATGGCCAGG-AGGTAGCCAATGCACTAAGGTAA-----GTT-------GGAAA---TACG---GGGT-----------------------------------------------------------------------------------------------------------------------------ATAAGGTTTCTTCAAAACCGGTTTCGGTATGATATCGGTTCTACCTGA------GAAATTCGAAGAGATTATATCTTGTAATCAATA-CATAGAAA------------------GAGATT-TTTCTTACGCAGA----TTTATGAGCATT----------------------------------------------------T---TG-------ACAATTCCAGGACAATTCTGAGCTACAACGCCAGTGTTAACCTCTATATGTTCTTTGGCG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........CCAAAGGCGTGATGGCCAGG-AGGTAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATTCTGAGCTACAACGCCAGT.........................	25	1	1.00	1	0	1	0	0
...................GTGATGGCCAGG-AGGTAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
...............AGGCGTGATGGCCAGG-AGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
...........................CAGG-AGGTAGCCAATGCACTAAGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0

dm3

CAGGAGCAGAACCAAAGGCGTGATGGCCAGG-AGGTAGCCAATGCACTAAGGTAT-----GTT-------GGAAA---TACG---GGGT-----------------------------------------------------------------------------------------------------------------------------ATAAGGTTTCTTCAAAACCGGTTTCGGTATGATATCGGTTCTACCTGA------GAAGTTTGAAGAGATT--ATCTTGTAATCTTAA-CATAGAGA------------------GAGATT-TTTCTTACCCAGA----TTTATGAGCATT----------------------------------------------------T---TC-------ACATTTCCAGGACAATTCTGAGCTACAACGCTAGTGTTAACCTCTATATGTTCTTTGGCG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......AGAACCAAAGGCGTGATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................ACG---GGGT-----------------------------------------------------------------------------------------------------------------------------ATAAGGTTTCG........................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CG---GGGT-----------------------------------------------------------------------------------------------------------------------------ATAAGGTTTCGA.......................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AGGCGTGATGGCCAGG-AGGTAGCCAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AGGAGCAGAACCAAAGGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GTGATGGCCAGG-AGGTAGCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................GTGATGGCCAGG-AGGTAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CG---GGGT-----------------------------------------------------------------------------------------------------------------------------ATAAGGTTTCTT.......................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACG---GGGT-----------------------------------------------------------------------------------------------------------------------------ATAAGGTTTAG........................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CG---GGGT-----------------------------------------------------------------------------------------------------------------------------ATAAGGTTTCGG.......................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CAGGAGCAGAACCAAAGGCGTGATGGCCAGG-AGGTGGCCAATGCGTTAAGGTAACATAAGTT-------GAGAA---T-----------------------------------------------------------------------------------------------------------------------------------------AAGGTTACTTCGAAACCGGTTTCGGCCTGATTTCGGTTCTACCTGAAATTGTGAAATTCGAAGAGATT--ATCTTGTAAACTATA-CATAGATA-------------------AGATT-TTTCTTACAATGA----TTTATGAGCA-T----------------------------------------------------T---TG-------ACAATTCCAGGACAATTCTGAGCTACAACGCCAGCGTTAACCTGTATATGTTCTTCGGCG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........ACCAAAGGCGTGATGGCCAGG-AGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	2	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTACAACGCCAGC.........................	18	1	1.00	1	1	0	0	0	0	0	0
....AGCAGAACCAAAGGCGTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATTCTGAGCTACAACGCC............................	22	1	1.00	1	0	0	0	0	0	1	0
.....GCAGAACCAAAGGCGTGATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
......................ATGGCCAGG-AGGTGGCCAATGCGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
.............AAAGGCGTGATGGCCAGG-AGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTGAGCTACAACGCCAGC.........................	22	1	1.00	1	0	0	0	0	1	0	0

droYak3

CAGGAGCAGAACCAAAGGCGTGATGGCCAGG-AGGTGGCCAATGCGTTAAGGTAA-----GTG-------GAAAA---TACG---GTGT-----------------------------------------------------------------------------------------------------------------------------AGAAGATTACTTCGAAACCGGTTTCGGGATGATTTCGGTTCTACCTGAAGTTAAGAAATTCGAAGGGATA--ATCTTGTAAGCTATT-CAG----------------------------TATTCACAACAAAGA----CTTATGAGCATT----------------------------------------------------T---AC-------ACAATTCCAGGACAATTCTGAGCTACAACGCCAGTGTTAACCTCTATATGTTCTTCGGCG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................CAGG-AGGTGGCCAATGCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
.AGGAGCAGAACCAAAGGCGTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
.......AGAACCAAAGGCGTGATGGCCAGG-AGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
...........................CAGG-AGGTGGCCAATGCGTTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACGCCAGTGTTAACCT.................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..........................CCAGG-AGGTGGCCAATGCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.............AAAGGCGTGATGGCCAGG-AGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...........CCAAAGGCGTGATGGCCAGG-AGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
.......AGAACCAAAGGCGTGATGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
............CAAAGGCGTGATGGCCAGG-AGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...............AGGCGTGATGGCCAGG-AGGTGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......AGAACCAAAGGCGTGATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............CAAAGGCGTGATGGCCAGG-AGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............CAAAGGCGTGATGGCCAGG-AGGTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....AGCAGAACCAAAGGCGTGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........ACCAAAGGCGTGATGGCCAGG-AGGTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................ATGGCCAGG-AGGTGGCCAATGCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................GCCAGG-AGGTGGCCAATGCGTTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......CAGAACCAAAGGCGTGATGGCCAGG-AGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GGAGCAGAACCAAAGGCGTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....GCAGAACCAAAGGCGTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................GATGGCCAGG-AGGTGGCCAATGCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTACAACGCCAGTGTTAACCT.................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............AAAGGCGTGATGGCCAGG-AGGTGGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........CCAAAGGCGTGATGGCCAGG-AGGTGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
CAGGAGCAGAACCAAAGGCGTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........CCAAAGGCGTGATGGCCAGG-AGGTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTACAACGCCAGTGTTAACCT.................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................GGCGTGATGGCCAGG-AGGTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........GAACCAAAGGCGTGATGGCCAGG-AGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................GGTGGCCAATGCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................GGCGTGATGGCCAGG-AGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATTCTGAGCTACAACGCCA...........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................GTGGCCAATGCGTTAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....AGCAGAACCAAAGGCGTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACGCCAGTGTTAACCT.................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

CAGGAGCAGAACCAAAGGCGTGATGGCCAAG-AGGTGGCCAATGCGTTAAAGTAA-----ATATC-----TTG-------------------------------------------------------------------------------------------------------------------------------------------GGA-------AATAAAAAA--------------------------------------A----------AAT----------------------------------------------------------------------TCAAA------------------------------AA--------------CAACT-------TTTCTCATAT---CCGATTGCAGGACAATCCTTAGCTATAACGCCAGTGTCAACCTCTACATGTTTTTCGGCG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACCGAACCC-ATGGCCAACGTGAGCACCCGATCGATTACTTCCACTTTTATGTAA-----GTT-------CAAGT---TTTG---GGTT----------------------------------------------------------CTGCTTTGTAATTAAAATTCTTGCCCTCTAATTTGTTTCGA-AAATTGTTTAT--G------------------------------------------------------------------------------------------------AT-TATAAGGA------------------GTGCCT-TTACAAACTAAG-------------------------------TT-ACTTATAAA-----------------A----ACA-T---TT-------TACCTTCCAGAAACATGCTGGACAACGGTGCCAGTGTCAACTTCTACATGTTCTACGGCG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACGTATCTT----------------------------------------------------T---TA-------ATGATTCCAGGACAATTCTCAGCTACAACGCCAGTGTCAACCTATACATGTTCTTTGGCG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGGAGCAAAACCAAAGGCGTGATGGCCAAG-AGGTAGCCGATGCTTTAAGGTGA-----GTT-------AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTACTAGTA----CTCAAGAGTAAA------------------------------------TTT-------------G---AA-------ATGATTCCAGGACGATCCTTAGCTACAACGCCAGTGTCAATCTATACATGTTCTTCGGCG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAGGAGCAAAACCAGAGGCGCGATGGCCAAG-AGGTGGCCAATGCGTTAAGGTAA-----GTT-------AAAAC---TTCG---GGGTCCGTAATCAACAATAAACAATCACCACTGCCAAATGGTGCAAATTCATTTTTTAAGTCTAGTATTATATTATATTTCCCTACTGTATTTTTTTTTTTGGTTATGTGTTCAT--A-----AGAGCGA-------AATGAAAGA--------------------------------------C----------AAT-TAA------------GT-TAATAAAGCTGGCATTGCACTGTGAA-------TTT--------------AATAAGCGTATT----------------------------------------------------T---TT-------TCACTCACAGGACGATCCTTACATACAACGCGAGTGTCAACCTGTACATGTTCTTCGGCG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAGGAGCAAAACCAACGACGGGATGGCCAGG-AGGTGGCCAATGCTCTGAAGTAA-----GTC-------TAGCT---TA-----------------------------------------------------------------------------AATAATTTTAATGCCAATGAAATTTTTTCAA-AAGATGCGGCAAAAATAAT------TTAACGTCACTTT------------------------------CTCGAGA-------------------------TTGCAACCATTATTATTCTAA------------------AAAGCC-TGTCTTACTCAC--------------CAT----------------------------------------------------T---TA---TCGAACAATTCCAGAACCATTCTTAGTTACAACGCCAGTGTCAACCTCTACATGTTCTTTGGTG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAGGAGCAGAACCAAAGGCGAGATGGCCAGG-TGGTAGCTGATGCATTGAAGTGA-----GTTTAGTTCTAAACGAACTACGCCCGGCT-----------------------------------------------------------------------------------------------------------------------------ATAAG------------------------------------------------------------------------------------------------------------------------------------AGTCTAG--------------------TT-CATAGCAAA-----------------A----CCTTC---TC-------TTTACTACAGAACCATTCTCAGCTATAATGCGAGCGTAAACTTATACATGTTCTTCGGTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................GAGATGGCCAGG-TGGTAGCTGATGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
...............AGGCGAGATGGCCAGG-TGGTAGCTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCGAGCGTAAACTTA................	20	1	1.00	1	0	0	0	0	1	0
...............AGGCGAGATGGCCAGG-TGGTAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0
....................AGATGGCCAGG-TGGTAGCTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCATTCTCAGCTATAATG..............................	20	1	1.00	1	0	0	1	0	0	0
..................CGAGATGGCCAGG-TGGTAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
............................AGG-TGGTAGCTGATGCATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCTATAATGCGAGCGTAAAC...................	24	1	1.00	1	0	0	0	0	0	1
.................GCGAGATGGCCAGG-TGGTAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................GAGATGGCCAGG-TGGTAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........ACCAAAGGCGAGATGGCCAGG-TGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCGAGCGTAAACTTATACATGTT........	28	1	1.00	1	0	0	0	0	1	0
.............AAAGGCGAGATGGCCAGG-TGGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATGCGAGCGTAAACTT.................	20	1	1.00	1	0	0	0	0	1	0

droBip1

CAAGAGCAGAACCAACGACGAGATGGCCAGG-AGGTAGCCGATGCATTGAGGTGA-----CTT-------TTG-------------------------------------------------------------------------------------------------------------------------------------------GTA-------ATCCCAAAAC------------------------------------------------CATTCTAG------------------------------------------------------------------------------------------TT-TCTAACAAA-----------------T----CCATT---TC-------TTCTTTCCAGAACCATTCTCAGCTACAATGCCAGCGTTAACTTGTACATGTTCTTCGGTG	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAGGAGATGAATCAGCGACGCGATGGTCAAG-TGGTGGCCGATGCCTTGAAGTGA-----GTG-------ATA-------------------------------------------------------------------------------------------------------------------------------------------GTG-------CT---------------------------------------------------------------------------------------------------------------TTTCTTATGGATATTGATCCAACTAATTT----------------------------------------------------C---TG-------ATCCTTTTAGGACCATTCTGAGCTACAATGCCAGCGTCAATCTGTACATGTTCTTTGGAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................CAAG-TGGTGGCCGATGCCTTGAAGACC-----.............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............CAGCGACGCGATGGTCAAG-TGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................CGATGGTCAAG-TGGTGGCCGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........................GTCAAG-TGGTGGCCGATGCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................GTCAAG-TGGTGGCCGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTGAGCTACAATGCCAGC.........................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................CAAG-TGGTGGCCGATGCCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................GCCGATGCCTTGAAGTGA-----GTG-------...................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAGCGTCAATCTGTACA............	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........TCAGCGACGCGATGGTCAAG-TGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.................................GGTGGCCGATGCCTTGAAGACC-----.............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	1	0	0	0	0	0

droPer2

CAGGAGATGAATCAGCGACGCGATGGTCAAG-TGGTGGCCGATGCCTTGAAGTGG-----GTG-------ATA-------------------------------------------------------------------------------------------------------------------------------------------GTG-------CT---------------------------------------------------------------------------------------------------------------TTTCTTATGGATGTTGATCCAACTAATTT----------------------------------------------------C---TG-------ATCCTTTTAGGACCATTCTGAGCTACAATGCCAGCGTCAATCTGTACATGTTCTTTGGCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATCTGTACATGTTCTTTGGC.	24	1	1.00	1	0	1	0	0	0	0
.....GATGAATCAGCGACGCGATGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAATGCCAGCGTCAATCTGT...............	23	1	1.00	1	0	0	0	0	0	1
..........ATCAGCGACGCGATGGTCAAG-TGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0

droWil2

CAAGAAGAGAATCAAAGACGCGATGGTCAGG-TTGTAGCCGATGCTTTGAAGTAT-----G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCTCTATGCCTTTAAACATTCTCAAGTG-ACTGAAATT--------------CTAAT-------TCCTTTTGCT---TAAACTTTAGAACCATTCTTAGTTACAATGCAAGTGTCAATTTGTACATGTTCTTTGGCG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............AAAGACGCGATGGTCAGG-TTGTAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	3	0	0
.....................GATGGTCAGG-TTGTAGCCGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0
.....................GATGGTCAGG-TTGTAGCCGATGCTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0
..................CGCGATGGTCAGG-TTGTAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	1	0
...............AGACGCGATGGTCAGG-TTGTAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...GAAGAGAATCAAAGACGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.............AAAGACGCGATGGTCAGG-TTGTAGCCGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
........GAATCAAAGACGCGATGGTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
......GAGAATCAAAGACGCGATGGTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..........ATCAAAGACGCGATGGTCAGG-TT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..................CGCGATGGTCAGG-TTGTAGCCGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...GAAGAGAATCAAAGACGCGATGGTCAGG-T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
................GACGCGATGGTCAGG-TTGTAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
....................CGATGGTCAGG-TTGTAGCCGATGCTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
...................GCGATGGTCAGG-TTGTAGCCGATGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.....................GATGGTCAGG-TTGTAGCCGATGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.............AAAGACGCGATGGTCAGG-T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
..............AAGACGCGATGGTCAGG-TTGTAGCCGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
........GAATCAAAGACGCGATGGTCAGG-TT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.....................GATGGTCAGG-TTGTAGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
......GAGAATCAAAGACGCGATGGTCAGG-T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTTACAATGCAAGTGT.......................	20	1	1.00	1	0	0	1	0	0
..................CGCGATGGTCAGG-TTGTAGCCGATGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.............AAAGACGCGATGGTCAGG-TTGTAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.....................GATGGTCAGG-TTGTAGCCGATGCTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAATGCAAGTGTCAATTTG................	23	1	1.00	1	0	0	1	0	0
................GACGCGATGGTCAGG-TTGTAGCCGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0

droVir3

CAAGAGACGAATCAGCGACGCGACGGTCAGG-TGGTGGCCAACGCCTTGAAGTAA-----TAT-------TAA-------------------------------------------------------------------------------------------------------------------------------------------GGAAACAG--------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATTAATATTTAATTGTGCACTAACAATTGTTCCACT---TA-------CCACATTTAGGACCATACTCAGCTACAATGCCAGCGTTAATCTGTACATGTTCTTTGGCG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATCTGTACATGTTCTTTGGC.	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GGTCAGG-TGGTGGCCAACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATCTGTACATGTTCTTTGGCG	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGACGGTCAGG-TGGTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AGACGAATCAGCGACGCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GACGCGACGGTCAGG-TGGTGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAATGCCAGCGTTAAT...................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AGACGAATCAGCGACGCGACGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GAATCAGCGACGCGACGGTCAGG-TGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCTACAATGCCAGC.........................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GAATCAGCGACGCGACGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAATGCCAGCGTTAATCT.................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GCGACGGTCAGG-TGGTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CAGCGACGCGACGGTCAGG-TGGTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GACGAATCAGCGACGCGACGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCGTTAATCTGTACATGTT........	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAATGCCAGCGTTAAT...................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GCGACGGTCAGG-TGGTGGCCAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CGAATCAGCGACGCGACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGCGTTAATCTGTACAT...........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAGGAGATGAATCAGCGACGTGATCCGCAGG-AAGTGGCCAGCGCTTTAAAGTAC-----CTT-------AAAAA---AA--------------------------------------------------------------------------------------------------------------------------------------------TTATATTAGAATTTCTATCGGAATAA------------------------------------------------------------------------------------------------------------------------------------CTTAATAATAAT----------------------CAACT---TC-------TCCCTTTCAGGACCATACTCAGCTACAATGCCAGCGTCAATCTATACATGTTCTTTGGCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............GCGACGTGATCCGCAGG-AAGTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATGCCAGCGTCAATCTATACATG..........	27	1	1.00	1	0	0	0	0	0	1
....................TGATCCGCAGG-AAGTGGCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTATACATGTTCTTTGGC.	21	1	1.00	1	1	0	0	0	0	0
...............CGACGTGATCCGCAGG-AAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............GCGACGTGATCCGCAGG-AAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................GTGATCCGCAGG-AAGTGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
....AGATGAATCAGCGACGTGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................ATCCGCAGG-AAGTGGCCAGCGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATACTCAGCTACAATGCCAGCGTC......................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCAGCTACAATGCCAGCGTCAAT...................	27	1	1.00	1	0	0	0	0	0	1
...................GTGATCCGCAGG-AAGTGGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
........GAATCAGCGACGTGATCCGCAGG-AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0

droGri2

CAAGAGATGAATCAGCGACGCGATGGAAAGG-AGGTGGCCGACGCTCTAAAGTAT-----GTT-------TTGAA---TAAA---G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAAATATATT---------------------CTAAT-----------------G-GTTTCA--------------CTTATTTCAGGAAGATACTCAGCTATGGTGCCAGCGTTAATCTCTACATGTTCTTTGGTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..AGAGATGAATCAGCGACGCGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATACTCAGCTATGGTGCC............................	22	1	1.00	1	1	0
..AGAGATGAATCAGCGACGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1

dsi_10789

2l:5800499-5800653 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-30.1	-30.0	-29.9