ID:

dsi_10788

 Coordinate:

2r:5359475-5359773 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5358921_5359474_+]; CDS [2r_5358921_5359474_+]; CDS [2r_5359774_5361700_+]; exon [2r_5359774_5361700_+]; intron [2r_5359475_5359773_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCTGGGAGGGAAGCCAGCTGTTGGGTCCGGAATCGGCGGTCGTTATACCGTAAGTAGTTAATAGTTAATAGCCACATCTTATAGATTCCAAAGTGAACCTATCCCTTATGACCATATCCTTTTGCATGACGTACTTAAACTCACATTAGCCCACAGTACTTCTCTATTCATATTAAGGAATAGAATAGAGTTAAACGATAGCTTATCTTCATACACTAACTTGCAATCCTATCTTTCGACTTGATAACAGTATCTTCTTCAAAATAAATAATCACAAATAATAGCTATCTTAAGATTCCACCTTCTTAACCCAACTAATCCATCTTTATTATGCTTACCCCTCTACAGAGGCCTCAACCAACGACTCCTGTGGACCACCCTGAATCCCGCCTCTGTGA
**************************************************(((((((((((........))))........((((.(((......))).))))...(((((..((........))))))).(((((....((......)).....)))))..((((((((.((((....))))))))))))......(((((((..........................((((.........))))..((......))........................)))))))((((((........))))))......................)))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.............................................................................................................................................................................................................................................................................................................................................................................CTCCTGTGGACCACCCTGAATCCCGCCT...... 28 0 1 1.00 1 1 0 0
..........................................................................................................................................................................................................................................................................................................................................................................CGACTCCTGTGGACCACCCTGAAT............. 24 0 1 1.00 1 1 0 0
...................................................................................................................................................................................................................................................................................................................................................................CAACCAACGACTCCTGTGGAC....................... 21 0 1 1.00 1 1 0 0
......................................................................................................................................................................................................................................................................................................................................................................CCAACGACTGCTTTGGAC....................... 18 2 7 0.14 1 1 0 0
.............GCCAGCCGTTAGGTTCGGA............................................................................................................................................................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 1 0
........................................................................................................CCTTATGACCATAGCA....................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1

Anti-sense strand reads

AAGACCCTCCCTTCGGTCGACAACCCAGGCCTTAGCCGCCAGCAATATGGCATTCATCAATTATCAATTATCGGTGTAGAATATCTAAGGTTTCACTTGGATAGGGAATACTGGTATAGGAAAACGTACTGCATGAATTTGAGTGTAATCGGGTGTCATGAAGAGATAAGTATAATTCCTTATCTTATCTCAATTTGCTATCGAATAGAAGTATGTGATTGAACGTTAGGATAGAAAGCTGAACTATTGTCATAGAAGAAGTTTTATTTATTAGTGTTTATTATCGATAGAATTCTAAGGTGGAAGAATTGGGTTGATTAGGTAGAAATAATACGAATGGGGAGATGTCTCCGGAGTTGGTTGCTGAGGACACCTGGTGGGACTTAGGGCGGAGACACT
**************************************************(((((((((((........))))........((((.(((......))).))))...(((((..((........))))))).(((((....((......)).....)))))..((((((((.((((....))))))))))))......(((((((..........................((((.........))))..((......))........................)))))))((((((........))))))......................)))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
........................................................................................................................................................................AGTATAATTCCTTATCTTAT................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................GTATAATTCCTTATCTTATC.................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................CTCCGGGGTTGGTTGC................................... 16 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................ATAATTCCTTATCTTATC.................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................ACTGAACTACTGTCATTGAAG............................................................................................................................................. 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................ATGCGATTGGGGAGATG.................................................... 17 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................GAAGTTATATTTATTGGTGTCT........................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................AGTAAGTGATTGAAAGTTCGG......................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................AAGACTTGGGTTGATT................................................................................ 16 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................ATGAATATGATTGTAATC......................................................................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................ATCGGGTGTCACGAA............................................................................................................................................................................................................................................. 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................CCGGAGTTGGATGATGA................................ 17 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................ATTTAAGTGTGATCGGGT..................................................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................................................................................GGCTCCGGGGTTGGATGC................................... 18 3 20 0.10 2 0 0 0 0 0 0 0 0 2 0
................................................................................................................................................................................................ATTTGCTATTGAATA................................................................................................................................................................................................ 15 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................AAGGCGGAAGTATTGGG...................................................................................... 17 2 12 0.08 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................GGGACTTACGGCGGA...... 15 1 12 0.08 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................ATGTGCTTGGACGTTAG.......................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 1 0 0 0 0 0 0
.............................CCTTAGCTTCCAGCAGTAT............................................................................................................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................CTCCGGGGTTGGATGC................................... 16 2 16 0.06 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................ATAGGGAATGCTTGTATCG........................................................................................................................................................................................................................................................................................ 19 3 19 0.05 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................CTCCGGGGTTGGATGCTA................................. 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................CTCCGGAGTTGGATGA................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................AGACAATAGTGGTATAGGA...................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 01:15 PM