ID:

dsi_1076

 Coordinate:

4:74073-74222 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+
mature
  1. 2l:20769720-20769744 +
  2. 2l:21446596-21446620 -
  3. 3r:183675-183699 -
  4. 3r:2831935-2831959 -
  5. dsi_1076  4:74117-74141 +
  6. 4:703466-703490 -
  7. 4:1013270-1013294 -
  8. x:18844708-18844732 +
star
  1. 2l:18632115-18632134 -
  2. 2l:21335319-21335338 +
  3. 2l:23182139-23182158 -
  4. 2l:23205326-23205345 -
  5. 2r:10211642-10211661 +
  6. 3l:8193276-8193295 +
  7. 3l:8193526-8193545 +
  8. 3l:11521008-11521027 -
  9. 3l:17797760-17797779 +
  10. 3l:22389603-22389622 +
  11. 3l:23123951-23123970 -
  12. 3r:1398128-1398147 -
  13. dsi_1076  4:74147-74166 +
  14. 4:827877-827896 +
  15. 4:905418-905437 +
  16. x:36308-36327 -
  17. x:14996734-14996753 -
  18. x:20839751-20839770 +
  19. node_57944:2409-2428 +
  20. node_11571:5349-5368 +

Sense Strand Reads

CCTGAGATCTCGACGTTCAAACGTACAGACGGAGACGTCAAGAATATATACACATTATAGGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAACGAATCTAGTATACTCTTTTACTCTACGAGTAACGGGTATAATTACCTTGTTAATCAAGCCAAAATGTATTTTATTTATTTTATTTAATCAAATAACAAGCCGCGTGAATGGATTATAAGAAAATATGCCTTTTCAGTACATGAATACAA
**********************************************************************************************...............(((((((..((((((...)))))).)))))))...********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 GSM343915
embryo
 M053
female body
 SRR902008
ovaries
 M025
embryo
 M023
head
 M024
male body
..............................................................................................TTTCAACGAATCTAGTATACTCTTT................................................................................................................................... 25 0 8 7.38 59 19 13 12 10 0 1 0 2 0 2 0 0
..............................................................................................TTTCAACGAATCTAGTATACTCTTTTA................................................................................................................................. 27 0 7 3.43 24 5 9 4 5 0 0 0 1 0 0 0 0
.........................................................................TCCTTCTGCCTGTTACATACT............................................................................................................................................................ 21 0 20 2.30 46 46 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTTCAACGAATCTAGTATACTCTT.................................................................................................................................... 24 0 8 2.13 17 4 5 2 6 0 0 0 0 0 0 0 0
...............................................ATACACATTATAGGGTCGGAA...................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
.....................................................................................................................................................................................TATTTAATCAAATAACAAGCCGCGTGAA......................................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................CTGCCTGTTACATACTTTTCAACGAA.................................................................................................................................................. 26 0 20 1.60 32 32 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGCCTGTTACATACTTTTCAACGAA.................................................................................................................................................. 25 0 20 1.55 31 31 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTTCAACGAATCTAGTATACTCTTTT.................................................................................................................................. 26 0 7 1.43 10 5 1 1 2 0 0 0 0 1 0 0 0
................................................................................................................................................................................................ATAACAAGCCGCGTGAATGGA..................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............CGTTCAAACGTACAGACGGAG........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAATCAAATAACAAGCCGCGTGAATGGA..................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..TGAGATCTCGACGTTCAAACGTACAGA............................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTTCAACGAATCTAGTATACTCTTTTAC................................................................................................................................ 28 0 7 0.71 5 2 0 0 0 1 0 0 2 0 0 0 0
..............................................................................CTGCCTGTTACATACTTTTCAACGAATC................................................................................................................................................ 28 0 20 0.65 13 4 7 1 1 0 0 0 0 0 0 0 0
............................................................................TTCTGCCTGTTACATACTTTTCAACGAA.................................................................................................................................................. 28 0 20 0.60 12 4 0 0 7 0 0 0 0 1 0 0 0
..............................................................................CTGCCTGTTACATACTTTTCAACGA................................................................................................................................................... 25 0 20 0.45 9 9 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGCCTGTTACATACTTTTCAACGAATC................................................................................................................................................ 27 0 20 0.35 7 0 0 7 0 0 0 0 0 0 0 0 0
......................................................................................TACATACTTTTCAACGAATCTAGTA........................................................................................................................................... 25 0 20 0.35 7 0 4 0 3 0 0 0 0 0 0 0 0
...............................................................................TGCCTGTTACATACTTTTCAACGA................................................................................................................................................... 24 0 20 0.30 6 0 0 6 0 0 0 0 0 0 0 0 0
..................................................................................CTGTTACATACTTTTCAACGAATC................................................................................................................................................ 24 0 20 0.30 6 0 0 2 2 0 0 0 2 0 0 0 0
............................................................................TTCTGCCTGTTACATACTTTTCAACGA................................................................................................................................................... 27 0 20 0.25 5 0 0 0 5 0 0 0 0 0 0 0 0
.............................................................................TCTGCCTGTTACATACTTTTCAACGAA.................................................................................................................................................. 27 0 20 0.25 5 0 0 0 5 0 0 0 0 0 0 0 0
.......................................................................................ACATACTTTTCAACGAATCTAGTATA......................................................................................................................................... 26 0 20 0.25 5 0 0 0 0 0 1 0 0 4 0 0 0
..............................................................................................TGTCAACGAATCTAGTATACTCTTTTA................................................................................................................................. 27 1 8 0.25 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TCTAGTATACTCTTTTACTCTACGAG........................................................................................................................ 26 0 10 0.20 2 0 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCATGAATGGATTAAAAG.............................. 18 2 15 0.20 3 0 0 0 0 2 0 0 0 0 0 0 1
........................................................................................................................................................................................................GCGCATGAATGGATTAAAAG.............................. 20 3 13 0.15 2 0 0 0 0 0 0 0 0 0 0 2 0
.........................................................................TCCTTCTGCCTGTTACATACTTTTCAAC..................................................................................................................................................... 28 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCTGCCTGTTACATACTTTTCAACGA................................................................................................................................................... 26 0 20 0.15 3 2 0 0 0 0 1 0 0 0 0 0 0
........................................................................TTCCTTCTGCCTGTTACATACTTTTCAA...................................................................................................................................................... 28 0 20 0.15 3 1 0 2 0 0 0 0 0 0 0 0 0
...............................................................................TGCCTATTACATACTTTTCAACGAA.................................................................................................................................................. 25 1 20 0.15 3 0 0 2 1 0 0 0 0 0 0 0 0
..........................................................................................................................TCTACGAGTAACGGGTATA............................................................................................................. 19 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0
...GAGATCTCGACGTTCA....................................................................................................................................................................................................................................... 16 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0
.........................................................................TCCTTCTGCCTGTAACATACTT........................................................................................................................................................... 22 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTCAACGAATCTAGTATACTCTTTTA................................................................................................................................. 26 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTTTCAACGAATCTAGTATACTCTTT................................................................................................................................... 26 0 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................TTTTCAACGAATCTAGTATACTCTT.................................................................................................................................... 25 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GCGCATGAATGGATTATA................................ 18 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................TGTCAACGAATCTAGTATACTCTTTT.................................................................................................................................. 26 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................CTTCTGCCTGTTACATACT............................................................................................................................................................ 19 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................ACATACTTTTCAACGAATCTAGT............................................................................................................................................ 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
..TGAGATCTCGACGTT......................................................................................................................................................................................................................................... 15 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................ATCTAGTATACTCTTTTACTCTACGA......................................................................................................................... 26 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CTTCTGCCTGTTACATACTTTTCAACG.................................................................................................................................................... 27 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
............................................................................................................................TACGAGTAACGGGTATAATT.......................................................................................................... 20 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0
.........................................................................TCCTTCTGCCTGTTACATACTT........................................................................................................................................................... 22 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
........................................................................TTCCTTCTGCCTGTTACATA.............................................................................................................................................................. 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CCAAGGCGCATGAATGGATT................................... 20 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................TTTTACTCTACGAGTAACGGGTATA............................................................................................................. 25 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0
..........................................................................................................TAGTATACTCTTTTACTCTACGAGTA...................................................................................................................... 26 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TAGTATACTCTTTTACTCTACGAG........................................................................................................................ 24 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................TACTCTACGAGTAACGGGTATAATT.......................................................................................................... 25 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TAGTATACTCTTTTACTCTACGAGT....................................................................................................................... 25 0 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0
.......TCTCGACGTTGAAACG................................................................................................................................................................................................................................... 16 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTTCAACGAACCTAGTATACTCTTTTA................................................................................................................................. 27 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TACTCTTTTACTCTACGAGTAACGGG................................................................................................................. 26 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTCAACGAATCTAGTATACTC...................................................................................................................................... 21 0 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................TTTCAACGAATCTAGTATATTCTTT................................................................................................................................... 25 1 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TAGACTCTTTTACTCCACGAGTAACGGG................................................................................................................. 28 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTTCAACGAATCTAGGATACT....................................................................................................................................... 21 1 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................TTTCAACGAATTTAGTATACTCTTTT.................................................................................................................................. 26 1 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................GTATACTCTTTTACTCTACGAGTGCC.................................................................................................................... 26 2 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TATACTCTTTTACTCTACGAG........................................................................................................................ 21 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTTCAACGAATCTAGTTTACTCTT.................................................................................................................................... 24 1 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................TATACTCTTTTACTCTGCGAGTAACGGG................................................................................................................. 28 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................AACGAATCTAGTATACT....................................................................................................................................... 17 0 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................TCTCAACGAATGTAGTATACTCTTT................................................................................................................................... 25 2 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................CTATTACATACTTTTCAACGAATCTAGTA........................................................................................................................................... 29 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................GTTACATACTTTTCAACGAATC................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TCCTTCTGCCTGTTACATACTTTTCA....................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ACTCTACGAGTAACGGGT................................................................................................................ 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................TCCTTCTGCCTGTTACATACTTTTCAA...................................................................................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................CTTCTGCCTGTTACATACTTTTCAAC..................................................................................................................................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................TGTTACATACTTTTCAACGAATCTAGT............................................................................................................................................ 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................TGTTACATACTTTTCAACGAA.................................................................................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................AACGCTTCCTTCTGCCTG..................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................TTTTACTCTACGAGTAACGGGTA............................................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.CTGAGATCTCGACGT.......................................................................................................................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................TTTACTCTACGAGTA...................................................................................................................... 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................AATACTCTTTTACTCTGCGAGTAACGGG................................................................................................................. 28 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................TTCCTTCTGCCTGTTACATACTT........................................................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................ACGAGTAACGGGTATAAT........................................................................................................... 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................ACGAGTAACGGGTATAATTA......................................................................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................TAGGGTCGGAAATGCT................................................................................................................................................................................. 16 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................GTTACATACTTTTCAACGAATCTAGT............................................................................................................................................ 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................GCATGAATGGATTAAGAGA............................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................CTTCTGCCTGTTACATACTTTTCAA...................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGCCTGTTACATACTTTTCA....................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................TCCTTCTGCCTGTTACATAC............................................................................................................................................................. 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................TCCTTCTGCCTGTTACATA.............................................................................................................................................................. 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TCTGCCTGTTACATACTTTTCAACG.................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTACATACTTTTCAACGAATCTAGT............................................................................................................................................ 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................TCTGCCTGTTACATACTTTTCAAC..................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.CTGAGATCTCGACGTT......................................................................................................................................................................................................................................... 16 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................TCTGCCTGTTACATACTTTTCAACGAATC................................................................................................................................................ 29 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................TCCTTCTGCCTGTTACATACTTTTCAACGA................................................................................................................................................... 30 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TGCCTGTTACATACTTTTCAACGAAT................................................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................TCCTTCTGCCTGTTACATACTTTT......................................................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................TACTCTACGAGTAACGGGTATAAT........................................................................................................... 24 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GGACTCTAGAGCTGCAAGTTTGCATGTCTGCCTCTGCAGTTCTTATATATGTGTAATATCCCAGCCTTTGCGAAGGAAGACGGACAATGTATGAAAAGTTGCTTAGATCATATGAGAAAATGAGATGCTCATTGCCCATATTAATGGAACAATTAGTTCGGTTTTACATAAAATAAATAAAATAAATTAGTTTATTGTTCGGCGCACTTACCTAATATTCTTTTATACGGAAAAGTCATGTACTTATGTT
**********************************************************************************************************...............(((((((..((((((...)))))).)))))))...********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 O001
Testis
 M053
female body
 SRR553487
NRT_0-2 hours eggs
.............................................................................AGACGGACAATGTATGAAAAGTTGCTT.................................................................................................................................................. 27 0 20 3.90 78 0 26 19 33 0 0 0 0 0 0 0
........................................................................AAGGAAGACGGACAATGTATGAAAA......................................................................................................................................................... 25 0 20 2.85 57 57 0 0 0 0 0 0 0 0 0 0
..........................................................................GGAAGACGGACAATGTATGAAAA......................................................................................................................................................... 23 0 20 1.55 31 31 0 0 0 0 0 0 0 0 0 0
.........................................................................AGGAAGACGGACAATGTATGAAAA......................................................................................................................................................... 24 0 20 1.30 26 0 0 25 0 0 0 0 0 0 1 0
..............................CCTCTGCAGTTCTTATATATG....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................TTTGCATGTCTGCCTCTGCAG................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................TCTGCAGTTCTTATATATGTG..................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........AGCTTCAAATTTGCATG................................................................................................................................................................................................................................ 17 2 9 0.89 8 8 0 0 0 0 0 0 0 0 0 0
............................................................................................................CATATGAGAAAATGAGATGCT......................................................................................................................... 21 0 17 0.82 14 0 0 0 0 0 0 0 0 14 0 0
..........................................................................................ATGAAAAGTTGCTTAGATCATATGAG...................................................................................................................................... 26 0 13 0.77 10 0 7 0 0 0 0 0 3 0 0 0
.........................................................................................TATGAAAAGTTGCTTAGATCATAT......................................................................................................................................... 24 0 20 0.60 12 12 0 0 0 0 0 0 0 0 0 0
.......................................................................GAAGGAAGACGGACAATGTATGAAAA......................................................................................................................................................... 26 0 20 0.60 12 12 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAAAGTTGCTTAGATCATATGAG...................................................................................................................................... 24 0 13 0.46 6 0 3 0 0 0 0 0 3 0 0 0
................................................................................CGGATAATGTATGAAAAGTTGCTT.................................................................................................................................................. 24 1 20 0.45 9 0 0 0 0 0 0 0 0 0 0 9
...................................................................TTGCGAAGGAAGACGGA...................................................................................................................................................................... 17 0 20 0.40 8 8 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TCATATGAGAAAATGAGATGCT......................................................................................................................... 22 0 14 0.36 5 5 0 0 0 0 0 0 0 0 0 0
..............................................................................GACGGACAATGTATGAAAAGTTGCTT.................................................................................................................................................. 26 0 20 0.30 6 0 0 0 0 0 0 0 6 0 0 0
....................................................................TGCGAAGGAAGACGGACAATGTAT.............................................................................................................................................................. 24 0 20 0.25 5 0 0 3 0 0 0 0 0 0 0 2
.................................................................................GGACAATGTATGAAAAGTTGCTT.................................................................................................................................................. 23 0 20 0.25 5 0 0 0 0 0 0 0 0 0 5 0
........................................................................................................AGATCATATGAGAAAA.................................................................................................................................. 16 0 19 0.21 4 1 2 0 1 0 0 0 0 0 0 0
.........AGCTTCAAATTTGCATGT............................................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GATCATATGAGAAAATGAGATGCT......................................................................................................................... 24 0 10 0.20 2 2 0 0 0 0 0 0 0 0 0 0
....TCTAGAGCTGCAAGTT...................................................................................................................................................................................................................................... 16 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................TTGCTTAGATCATATGAGAAAATGAGAT............................................................................................................................ 28 0 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................TCATATGAGAAAATGAGAT............................................................................................................................ 19 0 18 0.17 3 3 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TATGAGAAAATGAGATGCTCATTG.................................................................................................................... 24 0 13 0.15 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................GACAATGTATGAAAA......................................................................................................................................................... 15 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
......................................................................CGAAGGAAGACGGACAATGTAT.............................................................................................................................................................. 22 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATATGAGAAAATGAGAT............................................................................................................................ 17 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
...........................................................................GAAGACGGACAATGTATGAAAA......................................................................................................................................................... 22 0 20 0.10 2 0 1 0 0 1 0 0 0 0 0 0
.....................................................................GCGAAGGAAGACGGA...................................................................................................................................................................... 15 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................AGGAAGCCGGACAATGTATGAAAAGT....................................................................................................................................................... 26 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
........................................................................................................AGATCATATGAGAAAATGAGATGCTCATT..................................................................................................................... 29 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................AGATCATATGAGAAAATGAGATGCT......................................................................................................................... 25 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................ATCATATGAGAAAATGAGATGCTCA....................................................................................................................... 25 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................ATCATATGAGAAAATGAGATGCT......................................................................................................................... 23 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATGAAAAGTTGCTTAGATCATATGA....................................................................................................................................... 25 0 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................AAATGTTGCTTAGATCATATGAG...................................................................................................................................... 23 1 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................CTTAGATCATATGAGAAAATG................................................................................................................................ 21 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................AGAGCATATGAGAAAATGAGATGCT......................................................................................................................... 25 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................ATATGAGAAAATGAGATGCT......................................................................................................................... 20 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................TTAGAGCATATGAGAAAATGAGAT............................................................................................................................ 24 1 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................GGAAGACGGACAATGTCT.............................................................................................................................................................. 18 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................ACGGATAATGTATGAAAAGTTGCT................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................TTGCGAAGGAAGACGGACAATGTATGAAA.......................................................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................AATGAGAAAATGAGATGCTCATTG.................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TTTAAAGTTGCTTAGATCATATGAG...................................................................................................................................... 25 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
........................................................................AAGGAAGACGGACAATGTATGAAA.......................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
...............................................................................ACGGACAATGTATGAAAAGTTG..................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................AGGAAGACGGACAATGTCTGAAAAGT....................................................................................................................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
............................................................CCAGCCTTTGCGAAGGAAGACGGACA.................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................CTTTGCGAAGGAAGACGGACAATGTAT.............................................................................................................................................................. 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
............................................................CCAGCCTTTGCGAAGGAAGACGGA...................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................AAGGAAGACGGACAATGT................................................................................................................................................................ 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................CGGACAATGTATGAAAAGTTGCTTA................................................................................................................................................. 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................TTCGTAGTTCTTATATATGTG..................................................................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGAAAAGTTGCTTAGATCAT........................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................GAAGGAAGACGGACAATG................................................................................................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................ACGGACAATGTATGAAAAGTTGCT................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................CGAAGGAAGACGGACAATGTATGAAAA......................................................................................................................................................... 27 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................TAGATCATATGAGAAA................................................................................................................................... 16 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ATGAGAAAATGAGATGCT......................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:74023-74272 + dsi_1076 CCTGAGATCTCG----ACGTTCAAACGTACAGACGGA------GAC----------------------------------GTCAAGAATATATACACATTATAGGGTCGGAAACGCTTCCTTCTGCCTGTT----ACATACTTTT-------CAACGAATCTAGTATACTCTTTTACTC-------TACGAGTAACGGGTATAATTACCTTG----------TTA------------ATCAAGCCAA------------------------------------------------------------AA--TGTA---------TTTTATT---TATTT-------------------------------TATTTAATCAAAT-----AACAAGCC---GCG----------------------------------------------------------------------------------------------TGA--------ATG-------------GATTA-----------TA--AGAAAAT---------A----TGC---------C-----TT-T-------TCAG-TACATGAATACAA---
droSec2 scaffold_52:66182-66415 + TT-------------------CATACGTACATACGGA------GAC----------------------------------GTCAAGAATATATACACTTTATAGGGTCGGAAACGCTTCCTTCTGCCTGTT----ACATACTTTT-------CAACGAATCTAGTATACTCTTTTACTC-------TATGAGTAACGGGTATAATTACCTTG----------TTA------------ATCAAGCCAA------------------------------------------------------------AA--TGTA---------TTTTATT---TATTT-------------------------------TAT-TAAACAAAA-----AACAAGCC---GCG----------------------------------------------------------------------------------------------TAA--------ATG-------------GATTA-----------TA--AGAAAAT---------A----TGC---------C-----TT-T-------TCAG-TACATGAATACAA---
dm3 chr4:762455-762696 - TTTTTAATCTTA----ATCGTAATACGGATAGACG--------GACAGGCATGACTAGATC----------------------------------ACTTTTTAGAGTAACA---ACTTTCTTCTGCCTGTT----ACATACATTT-------CAAATAATGTTTTAAACACTTTTATTC-------TATGAGTAACGGGTAAAAAAAAGTA-------------A------------CACCAGCTAT------------------------------------------------------------TC--TGTT---------TTTTTTT---TTTTT---------T-TTGTGAATCGGAAAAG---------------------------G---------CC-------------------------------------------------------------------------------------------------------TG-------------AATAA-----------GA--AGTATCT---------A----TCCGTTGTTAATA-----T--T-------CAAA-AAAGTAAAGACAA---
droEre2 scaffold_4845:3381877-3382109 + CCTGAGATCTCG----ACGTTCATACGGACGGACA--------------------------------------------GACCTAGAATAAATATACTTTATGTGATCGGAAACGCTTTCTTCTACCTGTT----ACATACTTTT-------CAAAGAGTCGAATATACCCATTTACTC-------TACGAGTAGCGGTTATAAAAATAAA-------------------------------GCTGA------------TACA----AACGTTAATT-------------TTT--------------A-GC----------------------------ACCCAGC-----------------------------ATTTAAAT-----ATTAAGTT---GTG----------------------------------------------------------------------------------------------TAC--------CTG-------------TACT------------TA--TGTAAAT---------C----T-----------C-----TA-C-------TTAA-TGC-----TTTAA---
droYak3 v2_chrUn_004:274982-275273 + CCTGAGATCTCG----ACGTTCATACGGACAGACGGACGGACAGACGGACATGGCCAGATCGACTC-------GATCCTGATCAAGAATATATATACTTTATATGATCGGAAACGCTTCCTTCTGCCTGTT----ACATACTTTT-------CAACGAATCTAGTATACTCTTTTACTC-------TACGAGTAACGGGTATAATAACCTTCGAATCAATAATTA-----GAAATTTATTAAACCAA------------AAAA----ATAGGTTAT--------------------------------T--TT-----------------T---AATTT-------------------------------CAT-----AAATT-----ATTAATTT---ATTGTTCG------------------------------------------------------------------------------------------------------A-------------AA-TG-----------TA--AATAAAT---------A----T-----------------TT-T-------TCTG----ATGAGAACAA---
droEug1 scf7180000409690:9040-9309 - CCTGAGATCTCA----GC----------------------------------GGCTCAATCAATTTCGCTATTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTATCTGTT----ACATACTTTT-------CAACGAATCTAGTATACCCATTAACTC-------TACGAGTAACGGGTATAAAAACTTTC----------TGT-----GATATTTGATAAGCCAA------------TGTA----TTTGG-------------------------------------------------------GTTT---TGCTG-------------------------------TAT----------T------------------GGACTT-------------------AT--------------------------------------------------------------------C------------AAAGTGGGAAATGTATGATTTTCAAGTTTCA--AGAAAAT---------T----T-C---------G-----TTTT--------AAGTTACATGGATACAG---
droBia1 scf7180000302405:34151-34441 - TCCGAGATCTCA----GCTTTCATACGGACAGACG-----ACAGACGGACATGGCTAGATCGACTCGGCTATTAATCCTGATCAAGATAATATATACTTTATAGGGTCGGAAACGCTTTCTTCTACTTGTT----ACATTCTTTC-------TGACGAATCTAGTATACCCTTTTACTC-------TACGAGTAACGGGTATAATTAGT-TA----------TTA------------ATCATTTATA------------------------------------------------------------AA--TTTA---------TA-------------------------------------------------------------------------------------------------------------------------------------TTG--------TAGTTATACAAGTTTGCTAGCCAACAAAAACTTTTTTATG-------------GATTA-----------TA--ATAAATT---------T----AGT---------T-----TT-TATAT---TAAG-AATATAAAAACAA---
droTak1 scf7180000414584:15338-15580 - TCCGAGATACCA----GCGTTCATACAGACAGACAGACGGACAGAC------------------------------------------------TACTTAAT-----GGGAAACGCTTCCTTCTAGCTGTT----ACATACTTTT-------GCACGAATACAATATACCCTTTTACTC-------TACGAGTAACGGGTATAACTAGATT-------------A-----AACATGTGTCCAACCAC-------------------T----------T---------------------------------GCTA--ATATAGGGTTTATT---AATTTGT-----ATTT--------------------AAT----------------------------TGGCCGA-------------------AT--------------------------------------------------------------------A------------A-----------------------------A--AGTAAGT---------AAGTAAG-----CTAATC-----TT-T-GAG---TAAG-TACATGTATATAA---
droEle1 scf7180000490970:978632-978873 + TTCGAGATATTG----ACGTTCATATTGACGGATA--------GAC--------------AGACTCGACATTTGATCCTGATCAAGAAATTATACACTTTATAGGGTCGGAAACGCTTTCT-CTACCTCTT----ACATACTTTT-------CAACGAATACAATAT--CTCTTTTCTC-------TACGAGTAACGGGTATAACAACAGTC------------A------------ATTAAATCAA---------------GATT------------AAGTGTT---------------------------------------TTCAG-TTCAGAACA--------------------------AACTGTAT----------TAG---ACAA--CTCAGCA----------------------------------------------------------------------------------------------GGA--------GTG-------------GATCG-----------TG----------------------------------------------------------------AAAAAA---
droRho1 scf7180000767982:1753-2023 - TCCGAGATCTCA----GCGTTCATACGGACAGACA--------GACGGTCATGGCTAGATCGACTCGGCTAGTGATCCTGAACAA------------------GGGTCGGAAACGCTTCCTTATACCTGTT----ACATACTTTT-------GCACGAATCCAATATACCCTTTTACTC-------TACGAGTAACGGGTATAAATATATT-------------A------------GACAAAA----------------AA-----------------------------TTTATAATCACGGATCAA--TGTATC-------TCTCAAA---TCCTT-------AGCA--------------------AAA----------------------------TGTCAAC-------------------AC---------------------------------------------------------------------A--------ATT-------------GTGTA-----------TC--AGAAAAT---------G----AAT---------C-----TG-T-------AAAA-TACATTGAAACAATCT
droFic1 scf7180000454175:47419-47685 - GA---------------------------CGGACCGACGTACAGACGTA----T----TCTGATTCTACTCGTGATGCTGATCAAGAATATATATACTTTATGGGGTCTGAGGTGTCTCCTTCACTGCGTT----GCAAACATCT-------GACTGAAATTATAATACCCTTTTGCTC-------TGCAA-----GGGTATAAAAACCGTG------------C------------TTTCAACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTTAATTAAATTATGT---TTTACATTTAAAAGCAATTTATATTTCGATCATTATATT-----------------A---------AGT-------------TCATT-----------CA--AGAAAAT---------A----CAT---------T-----CTTT----TAT----ACAGGTCCATAAAA---
droKik1 scf7180000302242:21876-22112 + GA---------------------------CGGACAGACGGACAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTT----GCAAACTTCT-------GACTGAAATTATAATACCCTG---------------CA-----AGGGTATAAATATAAT-------------AACAAAGCCAATAATGAATATTTTTGTTAATTCTAAGAGCTG------------TTTTGAATTGGT------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------TA--T-AGGAT---------------------------------T-T----TTT----TAATATGCATAATA---
droAna3 scaffold_12916:5284791-5285015 - CT-GAGAGACTAGTTTGCGTAGAAACAGACAGACA--------GG------------------------AGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTT----GCACACTTTT-------GACCAAAATTATAATACCCT------C-------TGCA-----AGGGTATAATAATAATT----------CTT------------GATAAAA----------------AAAAAC-----------------------------------------AT--TGGATT-------TCCCTTC---TCTTT---------C-TCAC-------------------------AAA-------------------------------------TATC-------------------------------------------------------------------------TGA--------AAA-------------AATTA-----------TG--AAATAA---------------------------------------------------------AATAATTT
droBip1 scf7180000393472:5449-5692 - CGCG---------------TAGAAACAGACAGACAGACAGACAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTT----GCACACTTTT-------GGACAAAATTATAATACCCT------C-------TGCA-----AGGGTATAAAAATAGGA------------A-----------------TCTTA------------------------------------------------------------AA--TGTA---------CATAACA---TACCT-------------------------------TAA-TAATGTAAT-----AACA--------------------------------------------------------------------------------------------------------TTG--------ATA-------------CATTA-----------TT--AGAT------------------------------A-------C-------ATTA-TACATTGATACAT---
dp5 Unknown_singleton_2913:2377-2657 - TTTGAGCACTAG----GCGTTGATAGTGACATACAAACGGACAGACA--------------GACTCGGCTATTGATGCTGATCAAGAATATATTTACTTTATGGGGTCGGAAACGATTCCCTCTGGACATTCCTTACACACATCCATTTTCACCAGAAATCGTATATACCCCAATACTC-AT----TTTGAGTATCGGGTATAATAAATATT------------T------------TTCCAAATAA----------------CACT----------TTT----------TTT--------------AA--AGGG-------CATTTAG-T---AATTT-------------------------------GAT-----CAAACAAAGGAACAAAAT---CAG----------------------------------------------------------------------------------------------TAA------------------------AATTA-----------TA--AAAACA----------------AC---------T-----TA-T-------T------------CAATA---
droPer2 scaffold_16:1222832-1223138 - TTTGAGCACTAC----GCGCTGAAGGGGACGGACA--------GACTGACATGGCTCAATCTACTCGGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTT----ACACACATCCACTTTTACCACAAATCTAATATACCCCAATACTC-AT----TTTGAGTATCGGTTATAATTACCATA----------ATT------------ACCATT----------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGATGAAAAATAAATTA--------TTATTATGTTAGAAAGGACGGCGTCGTGAATGATTT--GT-------------TTGTT-----------CAAAAGAATCT---------ATGAAAG-----CT---T-----GA-AAAAT---TAGG-TACATACATGGAA---
droWil2 scf2_1100000004954:4833386-4833686 + TCCGAGATCTAG----GTGTTCATACGGACAGACGGACGGACAGACGGACATGGCTAGATCGACTCGGTTGTTGATCCTGATCAAGAATATATATACTTTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTT----ACATACATTT-------TGGCGACTTTAATATACCATTTCACCC-------TATGGGTGTATGGTATAACAATTGTT------------A-------------------------------------------------CCT-------------TCT--------------A-GA----------------------------ATCAAGA-----------------------------TTCCCTAT-----ATAAA---------------------------------------TTCCGTACTTTTGTAAATAAAATCAGTTCATATTTTG---AATTCAAC-----------------G---------AAT-------------GAATA-----------TT--GGGC------------------------------T----TT-T----TAT----TCACAAGGTAGAAA---
droVir3 scaffold_12855:9021806-9022089 - TCTGAGA------------------CGGACAGACA--------GACGAACATGGCTAGATGGACTCGGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCGGAGATGCTTCCTTCTGCCTGTT----ACATAAATTTGGATGTTGCACAAATACAATATACCCTTATACCC-ATTTTTAATGGGTTCAGGGTATAAAAATAATA----------TTG------------AACTGA----------------AGAGATG------------ATGGGAATTCGT------------------T--TG-----------------T---AATTT-------------------------------AAT-----TAAATTAT---GCGA--CTC-GTTATTCA-CTTTAAATAAATATGTTGAAT--------------------------------------------------------------------A------------A-----------------------------A--TGTAAAT----------------------------------------------------TCCAAACAA---
droMoj3 scaffold_3793:5002-5275 - TCGGAAATCGAC----GCGCTCAAACATACGGACAGACGGACA------------------GACTCAGCTCGTCATCCTGATCAAGAATATATATACTTTGTGGGGTCTGCCACGCCTCCTTCTGCTTGTT----ACATACATTT-------CAACAAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCAGGGTATAAAAACTAAG-------------------ACATTAATAAAACACA------------------------------------------------------------TA--GATA---------TTATCAT---AAGAA-------------------------------AGTATAATAATAT-----AGTA--------------------------------------------------------------------------------ACTACAGT-----------------A---------AAT-------------AGATA-----------CG--AGAA------------------------------A----CG-A----TTT----ACAAATGAACACAA---
droGri2 scaffold_15126:7142568-7142854 + TCTGAGACCTGC----GTGTTCATACAGACAGACGGACGGACGAACGGACATGGCTATATCGATTCGG---------CTGATCAAGAATATATATACTTAGTGGGGTCGGAGATGCTTCCTTCTGCCTGTT----ACATACATTT-------GTACAAA-CCATTATACTCATTTTACCCACTTTTAATGGGTTCAGGGTATAAACAAATA-------------C--------A---GTTAAAC--------------------------------A-------------TTT--------------AA--TGTT-------CATTTTA-T---AATTT-T-----ATT-TTAT-----------------------------------------------------------------------------------------------------------------------------------------------GA--------ATG-------------CATAT-----------AA--AGAAAATTCAATATAAA----TCCAGTT------ACGCTTT-T-------GTAA-GCTATAAACGTAA---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCTGAGATCTCG----ACGTTCAAACGTACAGACGGA------GAC----------------------------------GTCAAGAATATATACACATTATAGGGTCGGAAACGCTTCCTTCTGCCTGTT----ACATACTTTT-------CAACGAATCTAGTATACTCTTTTACTC-------TACGAGTAACGGGTATAATTACCTTG----------TTA------------ATCAAGCCAA------------------------------------------------------------AA--TGTA---------TTTTATT---TATTT-------------------------------TATTTAATCAAAT-----AACAAGCC---GCG----------------------------------------------------------------------------------------------TGA--------ATG-------------GATTA-----------TA--AGAAAAT---------A----TGC---------C-----TT-T-------TCAG-TACATGAATACAA---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................TTT-------CAACGAATCTAGTATACTCTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2587.3859002200131219100001000
..............................................................................................................................................TTT-------CAACGAATCTAGTATACTCTTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2773.432400010094550000000
.....................................................................................................................TCCTTCTGCCTGTT----ACATACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21202.3046000000004600000000
..............................................................................................................................................TTT-------CAACGAATCTAGTATACTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2482.131700000052460000000
...........................................................................................ATACACATTATAGGGTCGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
..................................................................................................................................................................................................................................................................................................................................................................................TATTTAATCAAAT-----AACAAGCC---GCG----------------------------------------------------------------------------------------------TGA--------A..........................................................................................................2812.00200000002000000000
..........................................................................................................................CTGCCTGTT----ACATACTTTT-------CAACGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................26201.6032000000003200000000
...........................................................................................................................TGCCTGTT----ACATACTTTT-------CAACGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.5531000000003100000000
..............................................................................................................................................TTT-------CAACGAATCTAGTATACTCTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2671.431000000011520010000
.............................................................................................................................................................................................................................................................................................................................................................................................AT-----AACAAGCC---GCG----------------------------------------------------------------------------------------------TGA--------ATG-------------GA.........................................................................................2111.00100000000000100000
.................CGTTCAAACGTACAGACGGA------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................TAATCAAAT-----AACAAGCC---GCG----------------------------------------------------------------------------------------------TGA--------ATG-------------GA.........................................................................................2811.00100000010000000000
..TGAGATCTCG----ACGTTCAAACGTACAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
..............................................................................................................................................TTT-------CAACGAATCTAGTATACTCTTTTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2870.71500020000201000000
..........................................................................................................................CTGCCTGTT----ACATACTTTT-------CAACGAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.651300000071410000000
........................................................................................................................TTCTGCCTGTT----ACATACTTTT-------CAACGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.601200000000470010000
..........................................................................................................................CTGCCTGTT----ACATACTTTT-------CAACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.45900000000900000000
...........................................................................................................................TGCCTGTT----ACATACTTTT-------CAACGAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.35700000007000000000
..................................................................................................................................T----ACATACTTTT-------CAACGAATCTAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.35700000040030000000
...........................................................................................................................TGCCTGTT----ACATACTTTT-------CAACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.30600000006000000000
..............................................................................................................................CTGTT----ACATACTTTT-------CAACGAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.30600020002020000000
........................................................................................................................TTCTGCCTGTT----ACATACTTTT-------CAACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.25500000000050000000
.........................................................................................................................TCTGCCTGTT----ACATACTTTT-------CAACGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.25500000000050000000
.......................................................................................................................................ACATACTTTT-------CAACGAATCTAGTATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.25500000000000041000
...............................................................................................................................................................TCTAGTATACTCTTTTACTC-------TACGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................26100.20200000011000000000
.....................................................................................................................TCCTTCTGCCTGTT----ACATACTTTT-------CAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.15300000000300000000
.........................................................................................................................TCTGCCTGTT----ACATACTTTT-------CAACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.15300000000200001000
....................................................................................................................TTCCTTCTGCCTGTT----ACATACTTTT-------CAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.15300000002100000000
.................................................................................................................................................................................TC-------TACGAGTAACGGGTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................19200.15300000000003000000
...GAGATCTCG----ACGTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.15300000000003000000
...............................................................................................................................................TT-------CAACGAATCTAGTATACTCTTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2670.14100000000100000000
.............................................................................................................................................TTTT-------CAACGAATCTAGTATACTCTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.13100000000010000000
.............................................................................................................................................TTTT-------CAACGAATCTAGTATACTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.13100000000100000000
.......................................................................................................................CTTCTGCCTGTT----ACATACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10200000020000000000
.......................................................................................................................................ACATACTTTT-------CAACGAATCTAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10200000000200000000
..TGAGATCTCG----ACGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.10200000020000000000
..............................................................................................................................................................ATCTAGTATACTCTTTTACTC-------TACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................26100.10100000000100000000
.......................................................................................................................CTTCTGCCTGTT----ACATACTTTT-------CAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.10200000000020000000
..........................................................................................................................................................................................TACGAGTAACGGGTATAATT........................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200000000002000000
.....................................................................................................................TCCTTCTGCCTGTT----ACATACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10200000000020000000
....................................................................................................................TTCCTTCTGCCTGTT----ACATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200000000200000000
...........................................................................................................................................................................TTTTACTC-------TACGAGTAACGGGTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200000000002000000
.................................................................................................................................................................TAGTATACTCTTTTACTC-------TACGAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................26110.09100000001000000000
.................................................................................................................................................................TAGTATACTCTTTTACTC-------TACGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................24110.09100000001000000000
..............................................................................................................................................................................TACTC-------TACGAGTAACGGGTATAATT........................................................................................................................................................................................................................................................................................................................................................................................................................25110.09100000001000000000
.................................................................................................................................................................TAGTATACTCTTTTACTC-------TACGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................25110.09100000000010000000
......................................................................................................................................................................TACTCTTTTACTC-------TACGAGTAACGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................26120.08100000000100000000
...............................................................................................................................................TT-------CAACGAATCTAGTATACTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.08101000000000000000
....................................................................................................................................................................TATACTCTTTTACTC-------TACGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................21160.06100000010000000000
.........................................................................................................................................................AACGAATCTAGTATACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................17180.06100000000001000000
................................................................................................................................GTT----ACATACTTTT-------CAACGAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000100000000
.....................................................................................................................TCCTTCTGCCTGTT----ACATACTTTT-------CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000100000000
...............................................................................................................................................................................ACTC-------TACGAGTAACGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
.....................................................................................................................TCCTTCTGCCTGTT----ACATACTTTT-------CAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000000010000000
.......................................................................................................................CTTCTGCCTGTT----ACATACTTTT-------CAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000010000000
...............................................................................................................................TGTT----ACATACTTTT-------CAACGAATCTAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000000010000000
...............................................................................................................................TGTT----ACATACTTTT-------CAACGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000001000000000
...............................................................................................................AACGCTTCCTTCTGCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05110000000000000000
...........................................................................................................................................................................TTTTACTC-------TACGAGTAACGGGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000010000000
.CTGAGATCTCG----ACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
............................................................................................................................................................................TTTACTC-------TACGAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
....................................................................................................................TTCCTTCTGCCTGTT----ACATACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000010000000
...........................................................................................................................................................................................ACGAGTAACGGGTATAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
...........................................................................................................................................................................................ACGAGTAACGGGTATAATTA.......................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000001000000
................................................................................................................................GTT----ACATACTTTT-------CAACGAATCTAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100100000000000000
.......................................................................................................................CTTCTGCCTGTT----ACATACTTTT-------CAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000100000000
..........................................................................................................................CTGCCTGTT----ACATACTTTT-------CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000010000
.....................................................................................................................TCCTTCTGCCTGTT----ACATAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000001000000000
.....................................................................................................................TCCTTCTGCCTGTT----ACATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000001000000000
.........................................................................................................................TCTGCCTGTT----ACATACTTTT-------CAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000100000000
.................................................................................................................................TT----ACATACTTTT-------CAACGAATCTAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000010000000
.........................................................................................................................TCTGCCTGTT----ACATACTTTT-------CAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000000010000
.CTGAGATCTCG----ACGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
.........................................................................................................................TCTGCCTGTT----ACATACTTTT-------CAACGAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05100000010000000000
.....................................................................................................................TCCTTCTGCCTGTT----ACATACTTTT-------CAACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................30200.05100000001000000000
...........................................................................................................................TGCCTGTT----ACATACTTTT-------CAACGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000001000000000
.....................................................................................................................TCCTTCTGCCTGTT----ACATACTTTT-------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000010000000
..............................................................................................................................................................................TACTC-------TACGAGTAACGGGTATAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000001000000
droSec2
TT-------------------CATACGTACATACGGA------GAC----------------------------------GTCAAGAATATATACACTTTATAGGGTCGGAAACGCTTCCTTCTGCCTGTT----ACATACTTTT-------CAACGAATCTAGTATACTCTTTTACTC-------TATGAGTAACGGGTATAATTACCTTG----------TTA------------ATCAAGCCAA------------------------------------------------------------AA--TGTA---------TTTTATT---TATTT-------------------------------TAT-TAAACAAAA-----AACAAGCC---GCG----------------------------------------------------------------------------------------------TAA--------ATG-------------GATTA-----------TA--AGAAAAT---------A----TGC---------C-----TT-T-------TCAG-TACATGAATACAA---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................TTT-------CAACGAATCTAGTATACTCTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.8876010
..............................................................................................................................................TTT-------CAACGAATCTAGTATACTCTTTTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2880.3833000
...............................................................................................................................................TT-------CAACGAATCTAGTATACTCTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2490.3333000
..............................................................................................................................................TTT-------CAACGAATCTAGTATACTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.2522000
................................................................................................CTTTATAGGGTCGGAAACGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010100
..............................................................................................................................................TTT-------CAACGAATCTAGTATACTCTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.1311000
..............................................................................................................................................TTT-------CAACGAATCTAGTATACTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................22180.0611000
....................................................................................................................TTCCTTCTGCCTGTT----ACATACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0511000
dm3
TTTTTAATCTTA----ATCGTAATACGGATAGACG--------GACAGGCATGACTAGATC----------------------------------ACTTTTTAGAGTAACA---ACTTTCTTCTGCCTGTT----ACATACATTT-------CAAATAATGTTTTAAACACTTTTATTC-------TATGAGTAACGGGTAAAAAAAAGTA-------------A------------CACCAGCTAT------------------------------------------------------------TC--TGTT---------TTTTTTT---TTTTT---------T-TTGTGAATCGGAAAAG---------------------------G---------CC-------------------------------------------------------------------------------------------------------TG-------------AATAA-----------GA--AGTATCT---------A----TCCGTTGTTAATA-----T--T-------CAAA-AAAGTAAAGACAA---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................T---------T-TTGTGAATCGGAAAAG---------------------------G---------CC-------------------------------------------------------------------------------------------------------..........................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TAGACG--------GACAGGCATGACTAGATC----------------------------------ACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................ATCGGAAAAG---------------------------G---------CC-------------------------------------------------------------------------------------------------------TG-------------AATAA-----------GA--AG.....................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------GA--AGTATCT---------A----TCCGTTGTTA........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TT---------T-TTGTGAATCGGAAAAG---------------------------G---------C..................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TAGACG--------GACAGGCATGACTAGATC----------------------------------AC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TGAGTAACGGGTAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TTC-------TATGAGTAACGGGTAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TTGTGAATCGGAAAAG---------------------------G---------CC-------------------------------------------------------------------------------------------------------TG-------------...........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................AAAG---------------------------G---------CC-------------------------------------------------------------------------------------------------------TG-------------AATAA-----------GA--AGT....................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TTAATCTTA----ATCGTAATACGGATAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................TAGACG--------GACAGGCATGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................ATCGGAAAAG---------------------------G---------CC-------------------------------------------------------------------------------------------------------TG-------------AATAA-----------GA--AGT....................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TTTTTTT---TTTTT---------T-TTGTGAATCGGA............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TTTTAGAGTAACA---ACTTTCTTCTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TAATACGGATAGACG--------GACAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................T---------T-TTGTGAATCGGAAAAG---------------------------G---------C..................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TCGGAAAAG---------------------------G---------CC-------------------------------------------------------------------------------------------------------TG-------------AATA.......................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TA----ATCGTAATACGGATAGACG--------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................CTTTTATTC-------TATGAGTAACGG................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................TTTTATTC-------TATGAGTAACGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................ACTTTCTTCTGCCTGTT----ACAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TTTATTC-------TATGAGTAACGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................CTTCTGCCTGTT----ACATACATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TTCTGCCTGTT----ACATACATTT-------CAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TTCTGCCTGTT----ACATACATTT-------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TTCTGCCTGTT----ACATACATTT-------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TAT------------------------------------------------------------TC--TGTT---------TTTTTTT---TTTTT---------T-TA......................................................................................................................................................................................................................................................................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CTTTCTTCTGCCTGTT----ACATAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................T------------------------------------------------------------TC--TGTT---------TTTTTTT---TTTTT---------T-T.......................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCTGAGATCTCG----ACGTTCATACGGACGGACA--------------------------------------------GACCTAGAATAAATATACTTTATGTGATCGGAAACGCTTTCTTCTACCTGTT----ACATACTTTT-------CAAAGAGTCGAATATACCCATTTACTC-------TACGAGTAGCGGTTATAAAAATAAA-------------------------------GCTGA------------TACA----AACGTTAATT-------------TTT--------------A-GC----------------------------ACCCAGC-----------------------------ATTTAAAT-----ATTAAGTT---GTG----------------------------------------------------------------------------------------------TAC--------CTG-------------TACT------------TA--TGTAAAT---------C----T-----------C-----TA-C-------TTAA-TGC-----TTTAA---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CCTGAGATCTCG----ACGTTCATACGGACAGACGGACGGACAGACGGACATGGCCAGATCGACTC-------GATCCTGATCAAGAATATATATACTTTATATGATCGGAAACGCTTCCTTCTGCCTGTT----ACATACTTTT-------CAACGAATCTAGTATACTCTTTTACTC-------TACGAGTAACGGGTATAATAACCTTCGAATCAATAATTA-----GAAATTTATTAAACCAA------------AAAA----ATAGGTTAT--------------------------------T--TT-----------------T---AATTT-------------------------------CAT-----AAATT-----ATTAATTT---ATTGTTCG------------------------------------------------------------------------------------------------------A-------------AA-TG-----------TA--AATAAAT---------A----T-----------------TT-T-------TCTG----ATGAGAACAA---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........TCG----ACGTTCATACGGACAGACGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.9519000000000019
.................CGTTCATACGGACAGACGGACGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.45900000000009
.......................................GACAGACGGACATGGCCAGATCGACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.25505000000000
..............................................................................................................................................................................TACTC-------TACGAGTAACGGGTATAATAACC.....................................................................................................................................................................................................................................................................................................................................................................................................................28200.20402200000000
CCTGAGATCTCG----ACGTTCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.15300000120000
..............................................................................................................................................................................TACTC-------TACGAGTAACGGGTATAATAAC......................................................................................................................................................................................................................................................................................................................................................................................................................27200.10202000000000
...........................................................................................................................................................................TTTTACTC-------TACGAGTAACGGGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................24200.10200200000000
.......................................................................................................................................................................................................................................AAATTTATTAAACCAA------------AAAA----ATAGG......................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
.......................TACGGACAGACGGACGGACAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
..............................................................................................................................................................................................................ACCTTCGAATCAATAATTA-----GAAATTTAT.......................................................................................................................................................................................................................................................................................................................................................................................28200.05100100000000
.................................................................................................................................................................................................................TTCGAATCAATAATTA-----GAAATTTAT.......................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
...................TTCATACGGACAGACGGACGGACAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
.................................CGGACGGACAGACGGACATGGCCAGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
....................TCATACGGACAGACGGACGGACAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................T-----ATTAATTT---ATTGTTCG------------------------------------------------------------------------------------------------------A-------------AA-TG-----------TA--.......................................................................24200.05100100000000
.................................................................................................TTTATATGATCGGAAACGCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110000000000
......................................GGACAGACGGACATGGCCAGATCGACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
droEug1
CCTGAGATCTCA----GC----------------------------------GGCTCAATCAATTTCGCTATTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTATCTGTT----ACATACTTTT-------CAACGAATCTAGTATACCCATTAACTC-------TACGAGTAACGGGTATAAAAACTTTC----------TGT-----GATATTTGATAAGCCAA------------TGTA----TTTGG-------------------------------------------------------GTTT---TGCTG-------------------------------TAT----------T------------------GGACTT-------------------AT--------------------------------------------------------------------C------------AAAGTGGGAAATGTATGATTTTCAAGTTTCA--AGAAAAT---------T----T-C---------G-----TTTT--------AAGTTACATGGATACAG---SizeHit CountTotal NormTotal
No Reads
droBia1
TCCGAGATCTCA----GCTTTCATACGGACAGACG-----ACAGACGGACATGGCTAGATCGACTCGGCTATTAATCCTGATCAAGATAATATATACTTTATAGGGTCGGAAACGCTTTCTTCTACTTGTT----ACATTCTTTC-------TGACGAATCTAGTATACCCTTTTACTC-------TACGAGTAACGGGTATAATTAGT-TA----------TTA------------ATCATTTATA------------------------------------------------------------AA--TTTA---------TA-------------------------------------------------------------------------------------------------------------------------------------TTG--------TAGTTATACAAGTTTGCTAGCCAACAAAAACTTTTTTATG-------------GATTA-----------TA--ATAAATT---------T----AGT---------T-----TT-TATAT---TAAG-AATATAAAAACAA---SizeHit CountTotal NormTotal
No Reads
droTak1
TCCGAGATACCA----GCGTTCATACAGACAGACAGACGGACAGAC------------------------------------------------TACTTAAT-----GGGAAACGCTTCCTTCTAGCTGTT----ACATACTTTT-------GCACGAATACAATATACCCTTTTACTC-------TACGAGTAACGGGTATAACTAGATT-------------A-----AACATGTGTCCAACCAC-------------------T----------T---------------------------------GCTA--ATATAGGGTTTATT---AATTTGT-----ATTT--------------------AAT----------------------------TGGCCGA-------------------AT--------------------------------------------------------------------A------------A-----------------------------A--AGTAAGT---------AAGTAAG-----CTAATC-----TT-T-GAG---TAAG-TACATGTATATAA---SizeHit CountTotal NormTotal
No Reads
droEle1
TTCGAGATATTG----ACGTTCATATTGACGGATA--------GAC--------------AGACTCGACATTTGATCCTGATCAAGAAATTATACACTTTATAGGGTCGGAAACGCTTTCT-CTACCTCTT----ACATACTTTT-------CAACGAATACAATAT--CTCTTTTCTC-------TACGAGTAACGGGTATAACAACAGTC------------A------------ATTAAATCAA---------------GATT------------AAGTGTT---------------------------------------TTCAG-TTCAGAACA--------------------------AACTGTAT----------TAG---ACAA--CTCAGCA----------------------------------------------------------------------------------------------GGA--------GTG-------------GATCG-----------TG----------------------------------------------------------------AAAAAA---SizeHit CountTotal NormTotal
No Reads
droRho1
TCCGAGATCTCA----GCGTTCATACGGACAGACA--------GACGGTCATGGCTAGATCGACTCGGCTAGTGATCCTGAACAA------------------GGGTCGGAAACGCTTCCTTATACCTGTT----ACATACTTTT-------GCACGAATCCAATATACCCTTTTACTC-------TACGAGTAACGGGTATAAATATATT-------------A------------GACAAAA----------------AA-----------------------------TTTATAATCACGGATCAA--TGTATC-------TCTCAAA---TCCTT-------AGCA--------------------AAA----------------------------TGTCAAC-------------------AC---------------------------------------------------------------------A--------ATT-------------GTGTA-----------TC--AGAAAAT---------G----AAT---------C-----TG-T-------AAAA-TACATTGAAACAATCTSizeHit CountTotal NormTotal
No Reads
droFic1
GA---------------------------CGGACCGACGTACAGACGTA----T----TCTGATTCTACTCGTGATGCTGATCAAGAATATATATACTTTATGGGGTCTGAGGTGTCTCCTTCACTGCGTT----GCAAACATCT-------GACTGAAATTATAATACCCTTTTGCTC-------TGCAA-----GGGTATAAAAACCGTG------------C------------TTTCAACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTTAATTAAATTATGT---TTTACATTTAAAAGCAATTTATATTTCGATCATTATATT-----------------A---------AGT-------------TCATT-----------CA--AGAAAAT---------A----CAT---------T-----CTTT----TAT----ACAGGTCCATAAAA---SizeHit CountTotal NormTotal
No Reads
droKik1
GA---------------------------CGGACAGACGGACAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTT----GCAAACTTCT-------GACTGAAATTATAATACCCTG---------------CA-----AGGGTATAAATATAAT-------------AACAAAGCCAATAATGAATATTTTTGTTAATTCTAAGAGCTG------------TTTTGAATTGGT------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------TA--T-AGGAT---------------------------------T-T----TTT----TAATATGCATAATA---SizeHit CountTotal NormTotal
No Reads
droAna3
CT-GAGAGACTAGTTTGCGTAGAAACAGACAGACA--------GG------------------------AGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTT----GCACACTTTT-------GACCAAAATTATAATACCCT------C-------TGCA-----AGGGTATAATAATAATT----------CTT------------GATAAAA----------------AAAAAC-----------------------------------------AT--TGGATT-------TCCCTTC---TCTTT---------C-TCAC-------------------------AAA-------------------------------------TATC-------------------------------------------------------------------------TGA--------AAA-------------AATTA-----------TG--AAATAA---------------------------------------------------------AATAATTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................ATATACTTTATAGGGTCGGAGATGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.306600000
......................................................................................AATATATATACTTTATAGGGTCGGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102020000
.............TTTGCGTAGAAACAGACAGACA--------GG------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000
............................................................................................................................CTGCGTT----GCACACTTTT-------GACCAAAATTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
droBip1
CGCG---------------TAGAAACAGACAGACAGACAGACAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTT----GCACACTTTT-------GGACAAAATTATAATACCCT------C-------TGCA-----AGGGTATAAAAATAGGA------------A-----------------TCTTA------------------------------------------------------------AA--TGTA---------CATAACA---TACCT-------------------------------TAA-TAATGTAAT-----AACA--------------------------------------------------------------------------------------------------------TTG--------ATA-------------CATTA-----------TT--AGAT------------------------------A-------C-------ATTA-TACATTGATACAT---SizeHit CountTotal NormTotal
No Reads
dp5
TTTGAGCACTAG----GCGTTGATAGTGACATACAAACGGACAGACA--------------GACTCGGCTATTGATGCTGATCAAGAATATATTTACTTTATGGGGTCGGAAACGATTCCCTCTGGACATTCCTTACACACATCCATTTTCACCAGAAATCGTATATACCCCAATACTC-AT----TTTGAGTATCGGGTATAATAAATATT------------T------------TTCCAAATAA----------------CACT----------TTT----------TTT--------------AA--AGGG-------CATTTAG-T---AATTT-------------------------------GAT-----CAAACAAAGGAACAAAAT---CAG----------------------------------------------------------------------------------------------TAA------------------------AATTA-----------TA--AAAACA----------------AC---------T-----TA-T-------T------------CAATA---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................TTGAGTATCGGGTATAATAAATATA------------......................................................................................................................................................................................................................................................................................................................................................................................................25120.3340400000000
...........................................................................TGCTGATCAAGAATATATTTACTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.2010100000000
......................................................................................................................................TACACACATCCATTTTCACCAGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.2010010000000
............................................................................GCTGATCAAGAATATATTTACTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.2010100000000
..........................................................................................................TCGGAAACGATTCCCTCTGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010100000000
......................................................................................................................................TACACACATCCATTTTCACCAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.1410010000000
..........................................................................................TATTTACTTTATGGGGTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.1310000001000
..................................................................................................................................................................................C-AT----TTTGAGTATCGGGTATAA..........................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000200
............................................................................................TTTACTTTATGGGGTCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.0910000000010
........................................................................TGATGCTGATCAAGAATATATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22160.0610000001000
...................................................................................................TATGGGGTCGGAAACGATTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010000000
..............................................................................................TACTTTATGGGGTCGGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000001000
.............................................................................................................................................................................ATACTC-AT----TTTGAGTATCGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
droPer2
TTTGAGCACTAC----GCGCTGAAGGGGACGGACA--------GACTGACATGGCTCAATCTACTCGGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTT----ACACACATCCACTTTTACCACAAATCTAATATACCCCAATACTC-AT----TTTGAGTATCGGTTATAATTACCATA----------ATT------------ACCATT----------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGATGAAAAATAAATTA--------TTATTATGTTAGAAAGGACGGCGTCGTGAATGATTT--GT-------------TTGTT-----------CAAAAGAATCT---------ATGAAAG-----CT---T-----GA-AAAAT---TAGG-TACATACATGGAA---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................AATCTAATATACCCCAATACTC-AT----TT..........................................................................................................................................................................................................................................................................................................................................................................................................................................26200.357070000
.................................................CATGGCTCAATCTACTCGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.331000010
....................TGAAGGGGACGGACA--------GACTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
droWil2
TCCGAGATCTAG----GTGTTCATACGGACAGACGGACGGACAGACGGACATGGCTAGATCGACTCGGTTGTTGATCCTGATCAAGAATATATATACTTTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTT----ACATACATTT-------TGGCGACTTTAATATACCATTTCACCC-------TATGGGTGTATGGTATAACAATTGTT------------A-------------------------------------------------CCT-------------TCT--------------A-GA----------------------------ATCAAGA-----------------------------TTCCCTAT-----ATAAA---------------------------------------TTCCGTACTTTTGTAAATAAAATCAGTTCATATTTTG---AATTCAAC-----------------G---------AAT-------------GAATA-----------TT--GGGC------------------------------T----TT-T----TAT----TCACAAGGTAGAAA---SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-----------------G---------AAT-------------GAATA-----------TT--GGGC------------------------------T----................................2011.00100100
..........AG----GTGTTCATACGGACAGACGGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.25505000
...............................................................CTCGGTTGTTGATCCTGATCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20404000
........................................................................................TATATATACTTTGTGGGGTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.15300030
...............................................................CTCGGTTGTTGATCCTGATCAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.15300030
.................TGTTCATACGGACAGACGGACGGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000
.........................................................................................................................TCTGCCTGTT----ACATACATTT-------TGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10202000
..............................................................................................TACTTTGTGGGGTCGGAGATGCTTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000
...................TTCATACGGACAGACGGACGGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
......................................GGACAGACGGACATGGCTAGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100
..........................................................................................TATATACTTTGTGGGGTCGGAGATGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
..............................AGACGGACGGACAGACGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
............................................................CGACTCGGTTGTTGATCCTGATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010
.......................................GACAGACGGACATGGCTAGATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGTTCATATTTTG---AATTCAAC-----------------G---------...........................................................................................................25200.05101000
.....................................................GCTAGATCGACTCGGTTGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
...........................................................TCGACTCGGTTGTTGATCCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100
...................TTCATACGGACAGACGGACGGACAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
..............................................................................................................................................................CTTTAATATACCATTTCACCC-------TATGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
.......................TACGGACAGACGGACGGACAGACGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.......TCTAG----GTGTTCATACGGACAGACGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010
droVir3
TCTGAGA------------------CGGACAGACA--------GACGAACATGGCTAGATGGACTCGGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCGGAGATGCTTCCTTCTGCCTGTT----ACATAAATTTGGATGTTGCACAAATACAATATACCCTTATACCC-ATTTTTAATGGGTTCAGGGTATAAAAATAATA----------TTG------------AACTGA----------------AGAGATG------------ATGGGAATTCGT------------------T--TG-----------------T---AATTT-------------------------------AAT-----TAAATTAT---GCGA--CTC-GTTATTCA-CTTTAAATAAATATGTTGAAT--------------------------------------------------------------------A------------A-----------------------------A--TGTAAAT----------------------------------------------------TCCAAACAA---SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................CC-ATTTTTAATGGGTTCAGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................22200.5010000000000000000000000000060004000000000000000000000000000000000
...........................................................................TGCTGATCAAGAATATATATACTTTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.357000000000000000000000000000070000000000000000000000000000000000
.............................................................................CTGATCAAGAATATATATACTTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.204000000000000000000000000004000000000000000000000000000000000000
..................................................................................CAAGAATATATATACTTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000000000000000000000000000000000030000000000000000000000000000
..................................................................................................................................................................................C-ATTTTTAATGGGTTCAGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000000000000000000000000000000000000000000000000000000000003000
.......................................................TAGATGGACTCGGCTATTGATGCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2670.141000000001000000000000000000000000000000000000000000000000000000
....................................................................CTATTGATGCTGATCAAGAATATAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000000020000000000000000000000000000000000
...................................................................................AAGAATATATATACTTTATGGGGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000002000000000000000000000000000000000000
.................................................................................TCAAGAATATATATACTTTATGGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102000000000000200000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TAATGGGTTCAGGGTATAAAAATAATA----------........................................................................................................................................................................................................................................................................................................................................................................................................27190.051000000000000100000000000000000000000000000000000000000000000000
................................................................................ATCAAGAATATATATACTTTATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
.....GA------------------CGGACAGACA--------GACGAACATGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................ATTTTTAATGGGTTCAGGGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000100000000000000000000000000000000000000000000000000
...........................................................................................ATATACTTTATGGGGTCGGAGATGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................CC-ATTTTTAATGGGTTCAGGGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
...........................................................................................ATATACTTTATGGGGTCGGAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000010000000000000000000000000000
...............................................................................GATCAAGAATATATATACTTTATGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................TAATGGGTTCAGGGTATAAAAATA.....................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000100000000000000000000000000000000000
droMoj3
TCGGAAATCGAC----GCGCTCAAACATACGGACAGACGGACA------------------GACTCAGCTCGTCATCCTGATCAAGAATATATATACTTTGTGGGGTCTGCCACGCCTCCTTCTGCTTGTT----ACATACATTT-------CAACAAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCAGGGTATAAAAACTAAG-------------------ACATTAATAAAACACA------------------------------------------------------------TA--GATA---------TTATCAT---AAGAA-------------------------------AGTATAATAATAT-----AGTA--------------------------------------------------------------------------------ACTACAGT-----------------A---------AAT-------------AGATA-----------CG--AGAA------------------------------A----CG-A----TTT----ACAAATGAACACAA---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................CTTTGTGGGGTCTGCCACGCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22201.45296000230
...........................................................................................................................................................................TGATTTCCCATTTTCAATGGGTTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................25200.408800000
.................................................................................................................................TT----ACATACATTT-------CAACAAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.255500000
...........................................................................................................................TGCTTGTT----ACATACATTT-------CAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22170.061000010
...................CTCAAACATACGGACAGACGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
.................CGCTCAAACATACGGACAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droGri2
TCTGAGACCTGC----GTGTTCATACAGACAGACGGACGGACGAACGGACATGGCTATATCGATTCGG---------CTGATCAAGAATATATATACTTAGTGGGGTCGGAGATGCTTCCTTCTGCCTGTT----ACATACATTT-------GTACAAA-CCATTATACTCATTTTACCCACTTTTAATGGGTTCAGGGTATAAACAAATA-------------C--------A---GTTAAAC--------------------------------A-------------TTT--------------AA--TGTT-------CATTTTA-T---AATTT-T-----ATT-TTAT-----------------------------------------------------------------------------------------------------------------------------------------------GA--------ATG-------------CATAT-----------AA--AGAAAATTCAATATAAA----TCCAGTT------ACGCTTT-T-------GTAA-GCTATAAACGTAA---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................TCCTTCTGCCTGTT----ACATACATTT-------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05110

Generated: 05/19/2015 at 05:43 AM