dsi_10750

Name	Class	Family	Strand
Hoana5	DNA	hAT-Ac	-

GGCTAATTAATTATTTTTAAATACCTTAGTCCACATAAGAAATCTTCACTGTAAATTCCGCATTTTACTTTTTGCGATTTTTAGAGGTGGAGAAACATCGATGATTCCTTTAAAAACATCGATGTTTGTGATTTTTCGAAATAATCGATGTTGGCATCTATGTTTCTCCACCTCTATTTCATTTGCTATTTCCACGAAATCAAATGAAATTCATTTGATATTTATTTCCAAGAAATCAAAACGAAGCACCATGTCAAGTTCAGATGACGATTGGTTTGACCA ************************************************((((((((((((..........)))).....(((((((((((((((((.((((...........(((((((((..((.(((....))).))..)))))))))..)))).)))))))))))))))))(((((((((..(((((...)))))))))))))).......)).)))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	O001 Testis	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	M023 head
................................................................................................................................................................................................................ATTGATTTGATTTTTATTTCCAGGAA................................................	26	3	1	2.00	2	2	0	0	0	0	0	0
.................................................................................................TCCATGATTCCTTTAAA........................................................................................................................................................................	17	1	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................GCACCATGTCAAGTTCAGA..................	19	0	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................GAAGCACCATGTCAAGTTCAGATGA...............	25	0	1	1.00	1	0	0	1	0	0	0	0
............................................................................................................................................................TCTTTGGTTCTCTACCTCTATT........................................................................................................	22	3	2	0.50	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................TGATTTGATTTTTATTTCCAGGAAA...............................................	25	3	3	0.33	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................ATTTGATTTTTATTTCCAGGA.................................................	21	2	5	0.20	1	0	1	0	0	0	0	0
....................................AAGAAATCTTGACTGTGA....................................................................................................................................................................................................................................	18	2	9	0.11	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................ATCAAGATTGGTTTGACC.	18	2	10	0.10	1	0	0	0	0	0	0	1
................................................................................................ATGGATGATTTCTTTAAAA.......................................................................................................................................................................	19	2	10	0.10	1	1	0	0	0	0	0	0
.....................TACCTTAGACCACTTAA....................................................................................................................................................................................................................................................	17	2	17	0.06	1	0	0	0	0	0	1	0
....................................................................................ATGTGGAGGAACACCGATG...................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1	0
......................................................................................GTGGAGGAACACCGATG...................................................................................................................................................................................	17	2	20	0.05	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................TTATTTCCACGGTATCAAAA.........................................	20	3	20	0.05	1	0	0	1	0	0	0	0
..............................................................................................................................TGTGATTTTTGGAAAT............................................................................................................................................	16	1	20	0.05	1	0	1	0	0	0	0	0

CCGATTAATTAATAAAAATTTATGGAATCAGGTGTATTCTTTAGAAGTGACATTTAAGGCGTAAAATGAAAAACGCTAAAAATCTCCACCTCTTTGTAGCTACTAAGGAAATTTTTGTAGCTACAAACACTAAAAAGCTTTATTAGCTACAACCGTAGATACAAAGAGGTGGAGATAAAGTAAACGATAAAGGTGCTTTAGTTTACTTTAAGTAAACTATAAATAAAGGTTCTTTAGTTTTGCTTCGTGGTACAGTTCAAGTCTACTGCTAACCAAACTGGT ************************************************((((((((((((..........)))).....(((((((((((((((((.((((...........(((((((((..((.(((....))).))..)))))))))..)))).)))))))))))))))))(((((((((..(((((...)))))))))))))).......)).)))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	O001 Testis	O002 Head	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M023 head	M024 male body	SRR902008 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M053 female body	M025 embryo	SRR1275483 Male prepupae
....................................................................................................................................................................................................................................................................GTCTACTGCTAACCAAACTGG.	21	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................ACTTTAAGTAAACTATATATA.........................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CGTGGTACAGTTCAAGTCTAC................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TCAAGTCTACTGCTAACCAAA.....	21	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................AATCTCCACCTCTTTGTAGC......................................................................................................................................................................................	20	0	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AGGTTCTTTAGTTTTGCTTCGT..................................	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0
................AATTTATGGAATCAGGTGTAT.....................................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TAACTAAACTAAAAATAAAGGTCCT.................................................	25	3	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................TTCGTGGTACAGTTCAAGTCT..................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................GTGGTACAGTTCAAGTCTAC................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AAGGTTCTTTAGTTTTGCTTC....................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................ATCTCCACCTCTTTGTAGCT.....................................................................................................................................................................................	20	0	7	0.86	6	0	0	6	0	0	0	0	0	0	0	0	0	0
.................................................................................ATCTCCACCTCTTTGTAGCTA....................................................................................................................................................................................	21	0	7	0.43	3	3	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CTAAACTAAAAATAAAGGTCCTT................................................	23	3	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TAAACGATGAAGGTG.......................................................................................	15	1	16	0.31	5	0	0	0	2	0	0	0	0	1	2	0	0	0
.............................AGGTGTATTCTTAAG..............................................................................................................................................................................................................................................	15	1	20	0.30	6	0	0	0	0	6	0	0	0	0	0	0	0	0
..................................................................................TCTCCACCTCTTTGTAGCTA....................................................................................................................................................................................	20	0	7	0.14	1	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AGGTTCGGTAGTTTTGCTT.....................................	19	2	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................TCTAACAAACTCCACCTCTT............................................................................................................................................................................................	20	3	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................GGCGCTTTAGTTTACTTG.........................................................................	18	2	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................GTACAGTTCAGGTCT..................	15	1	19	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TACAGTTCAGGTCTA.................	15	1	19	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................GAGATGAGGAGATAAAGTA....................................................................................................	19	3	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................GGAGATACAGAGAGGT................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................................AGATTACTTTAAGTA....................................................................	15	1	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:19556708-19556989 +	dsi_10750	GGCTAATTAATTATTTTT-AAATACC---------------------------------------------TTA-GTCCACATAAGAA-AT-CTTCA-------------CT------------------------------GTAA------AT-TCCGCATTTTA---CTTTTTGCGAT-------------T-----------TTTAGAGGTGGAGAAACATCGATGATTCCTTTAAAAACATCGATGTTTGTGATTTTT-CGAAATAATCGA---------TGTTGGCATCTATGTTTCTCCACCTCTATT--TCATTTGCTATT------TCCACGAAATCAAAT---------------------GAAATTC----------ATTTGATATTTATTT-----------------------CCA---------------------------AGAAATCAAAACGAAGCACCATGTCAAGTTCA---GATGACGATTGGTTTGACCA
droSec2	scaffold_0:20357131-20357387 +		GGCTAATTAATTATTTTT-AAATACC---------------------------------------------TTAGGTCCACATAAGAA-AT-CTTCA-------------CT------------------------------GTAA------AT-TCCGCATTTTA---CTTTTTGCAAT---------TTCAT-----------TTTAGAGGTGGAGAAACATCGATGATTCCTTTAAAAACATCGATGTTTGTGA----------------------------------------GTTTTTCCACCTCTATT--TCATTTGCTATT------TCCACGAAATCAAAT---------------------GAAATTC----------ATTTGATATTTATTT-----------------------CCA---------------------------AGAAATCAATACGAAGCACCATGTCAAGTTCA---GATGACGATTGGTTTGACCA
dm3	chr3R:20019391-20019654 +		GGCTAATTAATTATTTTT-AAATACC---------------------------------------------TTAGGTCCACATAAGAA-AT-GTTCA-------------CT------------------------------GTAA------AT-TGCGCACTTTA---ATTTTTGAAAT---------TTCAT-----------TTTAGAGGTGGAGAAACGTCGATGATTCCTTGAAAAACATCGATGTTTGTGATATTT-CGA----------------------TCCATCTATGTTTCTCCACCTCTATT--TCATTTGCTATT------TCCACGAAATCAAAT--------------------------------------ATT---TATTTATTT-----------------------CCA---------------------------AGAAATCAAAACGAAGCCCCATGTCAAGTTCA---GATGACGATTGGTTTGACCA
droEre2	scaffold_4820:8038099-8038178 -		GACAAATCAATTATATTT-TAATGAA---------------------------------------------TAATGTCTACATAAGTA-AT-CTTCA-------------CT------------------------------GTAA------AT-TGCACTTTACT---TTATTTGCCAT---------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	3R:26483215-26483293 -		GACAAATGGATTTTTTTT--AATGCA---------------------------------------------TTT-GTCCACATAAGTA-AG-CTTCA-------------CT------------------------------GTAA------AT-TGCACGTCGCA---CTTTTTGGCAT---------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000408984:839577-839713 +		TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAATGGAAAAACATCGATGTTGCTCCGGTAAACATCGATGTTGCCGATGTTT-CGAAAACATCGATGTCATTGATGTTCGCATCGATTTTTCTCCACCTCTAGTGCTTAACTCCTAGC------TCTGAGTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTG
droBia1	scf7180000301187:21299-21491 -		TT--AATAATTTA-TAATGAAATTAT---------------------------------------------ATG------------ATG-T-ATGTA-------------CT------------------------------TAAA------AT-TCGTCAATATC---CTCCATG---------------TGC-----------TATAGAGATGGAAAAACATCGATGTTGCCCCGGTAAACATCAATGTTGCCGATGTTT-CGAAAGCATCGA---------TGTTGGCATCGATGTTTCTCCACCTTTAAC--TCCTTGGCCCTGGTGCTTACCACAAGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CA
droTak1	scf7180000414373:13654-13877 -		TAATTATTGTTGATTTTT-ATATGCTGTGTCGCACATAAATTATGCCCTCTCAAAAATAAAATTTAAAATGTAT---------------------------TAAATAAAATTTATGC----------TTTATGCGGCTTTT-------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------ATTGTT------ACCACCTAACTAA-TCTCTACTGTATCTTCACT--CATC----ATTTTTGGGA------TTTCAATTGCG---------------------------------------------CTTCTAAGCTGTC-ACACGAAACACCATGTCAAGCTCA---GATGAAGATTGGTTTAACCA
droEle1	scf7180000491008:327565-327859 +		AACCAAA---TTGGTTTT-AAAAACC--------------------------------ATAATTTAAAATATAATGTTTTAATAAGCT-TA-ATTATTTATAAAATAACATACATACATACATACATATAATGCGACTTTTTACAAATTGTTTTTAGCACG---TTTTCT----------------------------------------------------------------TTGGTAT-------------------------------------------------------------------------------GTGTTAGT------TCCGCTTAACTGA-TACCTACTATTAT----------TT----ATTTATGGGA------TTTTAACTGCGTCTTTGCTTGCAGCAACGTTAACAACAAAGAAAAAAAAACTGCGTCTTTTAAATTA-TTACACCTAATACCATGTCAGGCTCT---GATGAAGATTGGTTCGACCA
droRho1	scf7180000780106:231042-231243 -		ATTAA-TAATTTA-TAAG-GAATAAA---------------------------------------------TTA-GACA-------AAT-T-AGTA------------AATTT-----------------------------A--T-----AATTTATTTG---GCTTCCTCTTCCAA-----------TCCGC----------AGTTAGAAATGGAAAAACATCGATAGTACCCTGCCAAACATCGATATTACCGATGTCTTTAAAAACATCGATA-TGTGTATGTTGGCATCAATGTTTCTTCACCTCTAGT--AA--ATACTATC------GTCGCGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453912:1189069-1189349 +		TT--AATAAAATATATTT-GGAAAAC---------------------------------------------TTT------------GTT-GGGTTCA-------------TT------------------------------TTAT------AT-TCATCATTTCT---ATTTTTAGATTAATAAAGTATTCTTTTTAAGCAGAACATTTGTTTGGAAAAATATTTATGATTTTCTCA----------------------------------------------TATTAATCTTACTATTTCTACAACTTTATA--TA--TAGCCATT------CCCACATAACTAA-TGCATACTGTACTAGAAATTGCGACCTTT----------CTGCGATTTTTATTGCG--------------------------------------------CCTTCCACAAAG-CCACACGAAAAACGATGTCAGGTTCC---GATGAGGATTGGTTTAACCA
droKik1	scf7180000302696:1645833-1646016 +		ATTTTACT---TA-TATG----------------------------------------------------------------------------------------------------------------------------------------------------------GTTG-TGT---------TTATT-----------TATAGAGGTGGAAAAACATCGATGATGCTCTGGCAAATATCGATGTTAGCGATGTTT-CGATGACATCGA---------TATTAGCATCGA--------CACCTCTATT--TATAT---TGTT------GCCAATTTTTGTAGT---------------------TCATTTT----------TTTTGTAATTTATTG-----------------------GGT---------------------------AGGAAAGAAAACA-------------------------------------AATCA
droAna3	scaffold_12911:2449415-2449592 -		TAATTAGTAATTTATCAG-AAATAAC---------------------------------------------TTA------------ATT-TAAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCTGCTTGA-----------TGCTC-----------GTTAGAGATG-ATAAACATCGATGTTGGCTTGCCAAACATCGATGTCAACGATGTTT-TCAAAACATCGATGACATCGATGTTAACATCGATGTTTCTCCACCTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000392916:5666-5830 +		AAGTAATT---TA-TCGG-AAATAAC---------------------------------------------TTA------------ATT-TAAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCTTCTTAA-----------TGCGC-----------GTTAGAGATG-AAAAACATCGATGTTGCCTGGTAAAACATCGATCTTTCCGATGTTT-CGAAAACATCGA---------TGTTGGCATCGATGTTTCTCCACCTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	2:14555961-14556016 +		TTCCACGAAATTAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATGTCTGGGTCCGAAGATGATGACTGGTTTACAAA
droPer2	scaffold_0:5864602-5864636 -		A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCCGGGTCCGAAGATGATGACTGGTTTACAAA
droWil2	scf2_1100000004902:2881899-2881958 -		TATTCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------CGCTATAACAATATTTCATCATGTCAGACTCG---GATGACGATTGGTTTACAAA
droVir3	scaffold_12822:2916776-2916811 -		CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGTCGGACTCG---GATGATGATTGGTTCAATAA
droMoj3	scaffold_6540:7469279-7469322 +		AAATAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTATGTCTGACTCT---GATGACGATTGGTTCAACAA
droGri2	scaffold_14906:2162240-2162282 -		AAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATCACAATGTCTGACTCG---GATGATGATTGGTTCAAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GGCTAATTAATTATTTTT-AAATACC---------------------------------------------TTA-GTCCACATAAGAA-AT-CTTCA-------------CT------------------------------GTAA------AT-TCCGCATTTTA---CTTTTTGCGAT-------------T-----------TTTAGAGGTGGAGAAACATCGATGATTCCTTTAAAAACATCGATGTTTGTGATTTTT-CGAAATAATCGA---------TGTTGGCATCTATGTTTCTCCACCTCTATT--TCATTTGCTATT------TCCACGAAATCAAAT---------------------GAAATTC----------ATTTGATATTTATTT-----------------------CCA---------------------------AGAAATCAAAACGAAGCACCATGTCAAGTTCA---GATGACGATTGGTTTGACCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCATGTCAAGTTCA---GA..................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCACCATGTCAAGTTCA---GATGA...............	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

GGCTAATTAATTATTTTT-AAATACC---------------------------------------------TTAGGTCCACATAAGAA-AT-CTTCA-------------CT------------------------------GTAA------AT-TCCGCATTTTA---CTTTTTGCAAT---------TTCAT-----------TTTAGAGGTGGAGAAACATCGATGATTCCTTTAAAAACATCGATGTTTGTGA----------------------------------------GTTTTTCCACCTCTATT--TCATTTGCTATT------TCCACGAAATCAAAT---------------------GAAATTC----------ATTTGATATTTATTT-----------------------CCA---------------------------AGAAATCAATACGAAGCACCATGTCAAGTTCA---GATGACGATTGGTTTGACCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACGAAGCACCATGTCAAGTTCA---G...................	26	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA---GATGACGATTGGTT......	18	1	1.00	1	0	0	1	0

dm3

GGCTAATTAATTATTTTT-AAATACC---------------------------------------------TTAGGTCCACATAAGAA-AT-GTTCA-------------CT------------------------------GTAA------AT-TGCGCACTTTA---ATTTTTGAAAT---------TTCAT-----------TTTAGAGGTGGAGAAACGTCGATGATTCCTTGAAAAACATCGATGTTTGTGATATTT-CGA----------------------TCCATCTATGTTTCTCCACCTCTATT--TCATTTGCTATT------TCCACGAAATCAAAT--------------------------------------ATT---TATTTATTT-----------------------CCA---------------------------AGAAATCAAAACGAAGCCCCATGTCAAGTTCA---GATGACGATTGGTTTGACCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCAAGTTCA---GATGACGAT...........	22	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TCCATCTATGTTTCTCCACCTC........................................................................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GGTGGAGAAACGTCGATGATT......................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TTTAGAGGTGGAGAAACGTCGAG..........................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TCCATCTATGTTTCTCCACCTCT.......................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TGCTATT------TCCACGAAATCAAAT--------------------------------------ATT---.....................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CTATGTTTCTCCACCTCTATT--TCAT..............................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACGAAGCCCCATG................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TTTGTGATATTT-CGA----------------------TCCATCTATGTTTC................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTTCA---GATGACGATTGGTT......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................ATT--TCATTTGCTATT------TCCACG..........................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTAGAGGTGGAGAAACGTCGAT..........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------CCA---------------------------AGAAATCAAAACGA.........................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GAAAAACATCGATGTTTGTGA.............................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GACAAATCAATTATATTT-TAATGAA---------------------------------------------TAATGTCTACATAAGTA-AT-CTTCA-------------CT------------------------------GTAA------AT-TGCACTTTACT---TTATTTGCCAT---------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

GACAAATGGATTTTTTTT--AATGCA---------------------------------------------TTT-GTCCACATAAGTA-AG-CTTCA-------------CT------------------------------GTAA------AT-TGCACGTCGCA---CTTTTTGGCAT---------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAATGGAAAAACATCGATGTTGCTCCGGTAAACATCGATGTTGCCGATGTTT-CGAAAACATCGATGTCATTGATGTTCGCATCGATTTTTCTCCACCTCTAGTGCTTAACTCCTAGC------TCTGAGTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TT--AATAATTTA-TAATGAAATTAT---------------------------------------------ATG------------ATG-T-ATGTA-------------CT------------------------------TAAA------AT-TCGTCAATATC---CTCCATG---------------TGC-----------TATAGAGATGGAAAAACATCGATGTTGCCCCGGTAAACATCAATGTTGCCGATGTTT-CGAAAGCATCGA---------TGTTGGCATCGATGTTTCTCCACCTTTAAC--TCCTTGGCCCTGGTGCTTACCACAAGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAATTATTGTTGATTTTT-ATATGCTGTGTCGCACATAAATTATGCCCTCTCAAAAATAAAATTTAAAATGTAT---------------------------TAAATAAAATTTATGC----------TTTATGCGGCTTTT-------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------ATTGTT------ACCACCTAACTAA-TCTCTACTGTATCTTCACT--CATC----ATTTTTGGGA------TTTCAATTGCG---------------------------------------------CTTCTAAGCTGTC-ACACGAAACACCATGTCAAGCTCA---GATGAAGATTGGTTTAACCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AACCAAA---TTGGTTTT-AAAAACC--------------------------------ATAATTTAAAATATAATGTTTTAATAAGCT-TA-ATTATTTATAAAATAACATACATACATACATACATATAATGCGACTTTTTACAAATTGTTTTTAGCACG---TTTTCT----------------------------------------------------------------TTGGTAT-------------------------------------------------------------------------------GTGTTAGT------TCCGCTTAACTGA-TACCTACTATTAT----------TT----ATTTATGGGA------TTTTAACTGCGTCTTTGCTTGCAGCAACGTTAACAACAAAGAAAAAAAAACTGCGTCTTTTAAATTA-TTACACCTAATACCATGTCAGGCTCT---GATGAAGATTGGTTCGACCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTAA-TAATTTA-TAAG-GAATAAA---------------------------------------------TTA-GACA-------AAT-T-AGTA------------AATTT-----------------------------A--T-----AATTTATTTG---GCTTCCTCTTCCAA-----------TCCGC----------AGTTAGAAATGGAAAAACATCGATAGTACCCTGCCAAACATCGATATTACCGATGTCTTTAAAAACATCGATA-TGTGTATGTTGGCATCAATGTTTCTTCACCTCTAGT--AA--ATACTATC------GTCGCGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TT--AATAAAATATATTT-GGAAAAC---------------------------------------------TTT------------GTT-GGGTTCA-------------TT------------------------------TTAT------AT-TCATCATTTCT---ATTTTTAGATTAATAAAGTATTCTTTTTAAGCAGAACATTTGTTTGGAAAAATATTTATGATTTTCTCA----------------------------------------------TATTAATCTTACTATTTCTACAACTTTATA--TA--TAGCCATT------CCCACATAACTAA-TGCATACTGTACTAGAAATTGCGACCTTT----------CTGCGATTTTTATTGCG--------------------------------------------CCTTCCACAAAG-CCACACGAAAAACGATGTCAGGTTCC---GATGAGGATTGGTTTAACCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTTTACT---TA-TATG----------------------------------------------------------------------------------------------------------------------------------------------------------GTTG-TGT---------TTATT-----------TATAGAGGTGGAAAAACATCGATGATGCTCTGGCAAATATCGATGTTAGCGATGTTT-CGATGACATCGA---------TATTAGCATCGA--------CACCTCTATT--TATAT---TGTT------GCCAATTTTTGTAGT---------------------TCATTTT----------TTTTGTAATTTATTG-----------------------GGT---------------------------AGGAAAGAAAACA-------------------------------------AATCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TAATTAGTAATTTATCAG-AAATAAC---------------------------------------------TTA------------ATT-TAAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCTGCTTGA-----------TGCTC-----------GTTAGAGATG-ATAAACATCGATGTTGGCTTGCCAAACATCGATGTCAACGATGTTT-TCAAAACATCGATGACATCGATGTTAACATCGATGTTTCTCCACCTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................TGCTTGA-----------TGCTC-----------GTTAGAGATG-ATA...................................................................................................................................................................................................................................................................................................	25	4	7.75	31	25	2	3	0	1	0
.......................................................................................................................................................................TCCCTGCTTGA-----------TGCTC-----------GTTAGAGATG-......................................................................................................................................................................................................................................................................................................	26	4	6.25	25	7	3	14	0	1	0
.......................................................................................................................................................................TCCCTGCTTGA-----------TGCTC-----------GTTAGAGATG-A.....................................................................................................................................................................................................................................................................................................	27	4	4.50	18	11	5	2	0	0	0
............................................................................................................TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCTGC................................................................................................................................................................................................................................................................................................................................................	27	4	4.00	16	4	12	0	0	0	0
............................................................................................................TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCC...................................................................................................................................................................................................................................................................................................................................................	24	4	2.50	10	0	10	0	0	0	0
...........................................................................................................................................................................TGCTTGA-----------TGCTC-----------GTTAGAGATG-ATAAA.................................................................................................................................................................................................................................................................................................	27	4	2.50	10	9	0	0	0	1	0
.......................................................................................................................................................................TCCCTGCTTGA-----------TGCTC-----------GTTAGAGAT........................................................................................................................................................................................................................................................................................................	25	4	2.25	9	1	1	6	0	0	1
..............................................................................................TC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCC...................................................................................................................................................................................................................................................................................................................................................	26	4	2.25	9	0	9	0	0	0	0
...........................................................................................................................................................................TGCTTGA-----------TGCTC-----------GTTAGAGATG-......................................................................................................................................................................................................................................................................................................	22	4	2.25	9	1	2	5	1	0	0
...........................................................................................................................................................................TGCTTGA-----------TGCTC-----------GTTAGAGATG-ATAA..................................................................................................................................................................................................................................................................................................	26	4	2.00	8	6	1	1	0	0	0
.....................................................................................................................................................................................................................................TTGGCTTGCCAAACATCGATGTCAACGA.............................................................................................................................................................................................................................................................	28	5	1.80	9	1	7	1	0	0	0
................................................................................................................T-----------------------------A--C-----AATTTTCACG---TCTTCCCTGCTTGA-----------.................................................................................................................................................................................................................................................................................................................................	27	4	1.75	7	4	3	0	0	0	0
.......................................................................................................................................................................TCCCTGCTTGA-----------TGCTC-----------GTTAGAGATG-ATA...................................................................................................................................................................................................................................................................................................	29	4	1.75	7	4	3	0	0	0	0
............................................................................................AATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCC...................................................................................................................................................................................................................................................................................................................................................	28	4	1.50	6	0	6	0	0	0	0
...........................................................................................................................................................................TGCTTGA-----------TGCTC-----------GTTAGAGAT........................................................................................................................................................................................................................................................................................................	21	4	1.50	6	0	0	3	0	3	0
.......................................................................................................................................................................TCCCTGCTTGA-----------TGCTC-----------GTTAGAGA.........................................................................................................................................................................................................................................................................................................	24	4	1.50	6	3	2	1	0	0	0
............TATCAG-AAATAAC---------------------------------------------TTA------------ATT-TAAATC------------..................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	1.25	5	0	5	0	0	0	0
......................................................................................................................................................................TTCCCTGCTTGA-----------TGCTC-----------GTTAGAGAT........................................................................................................................................................................................................................................................................................................	26	4	1.25	5	2	1	2	0	0	0
..........................................................................................TAAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCC.......................................................................................................................................................................................................................................................................................................................................................	26	4	1.00	4	0	4	0	0	0	0
...........................................................................................................................................................................TGCTTGA-----------TGCTC-----------GTTAGAGATG-AT....................................................................................................................................................................................................................................................................................................	24	4	1.00	4	2	0	1	0	1	0
........................................................................................T-TAAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TC........................................................................................................................................................................................................................................................................................................................................................	26	4	1.00	4	0	4	0	0	0	0
...........................................................................................................................................................................................................................................TGCCAAACATCGATGTCAACGATGTT.........................................................................................................................................................................................................................................................	26	5	1.00	5	0	5	0	0	0	0
..........................................................................................TAAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCT.......................................................................................................................................................................................................................................................................................................................................................	26	4	1.00	4	0	4	0	0	0	0
...........................................................................................................................................................................TGCTTGA-----------TGCTC-----------GTTAGAGATG-A.....................................................................................................................................................................................................................................................................................................	23	4	1.00	4	3	0	1	0	0	0
.............................................................................................ATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCC...................................................................................................................................................................................................................................................................................................................................................	27	4	1.00	4	1	3	0	0	0	0
...............................................................................................................................................................................................................TAGAGATG-ATAAACATCGATGTTGGC....................................................................................................................................................................................................................................................................................	26	5	0.80	4	0	4	0	0	0	0
...........................................................................................................................................................................................................................AACATCGATGTTGGCTTGCCAAACAT.........................................................................................................................................................................................................................................................................	26	5	0.80	4	3	0	1	0	0	0
......................................................................................................................................................................................................................................TGGCTTGCCAAACATCGATGTCAACGA.............................................................................................................................................................................................................................................................	27	5	0.80	4	1	3	0	0	0	0
...................................................................................................................................................................................................................................TGTTGGCTTGCCAAACATCGATGTCAA................................................................................................................................................................................................................................................................	27	5	0.80	4	3	1	0	0	0	0
..........................................................................................................................................................................................................................................TTGCCAAACATCGATGTCAACGATGTT.........................................................................................................................................................................................................................................................	27	5	0.80	4	0	4	0	0	0	0
..............TCAG-AAATAAC---------------------------------------------TTA------------ATT-TAAATC------------TACT..............................................................................................................................................................................................................................................................................................................................................................................................................	27	4	0.75	3	0	3	0	0	0	0
........................................................................................T-TAAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCT.......................................................................................................................................................................................................................................................................................................................................................	27	4	0.75	3	1	2	0	0	0	0
..........TTTATCAG-AAATAAC---------------------------------------------TTA------------ATT-TAAATC------------..................................................................................................................................................................................................................................................................................................................................................................................................................	27	4	0.75	3	0	3	0	0	0	0
..........................................................................................................................................................TTTCACG---TCTTCCCTGCTTGA-----------TGCTC-----------GT...............................................................................................................................................................................................................................................................................................................	28	4	0.75	3	0	3	0	0	0	0
...............................................................................................C------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCC...................................................................................................................................................................................................................................................................................................................................................	25	4	0.75	3	1	2	0	0	0	0
...........................................................................................................................................................................TGCTTGA-----------TGCTC-----------GTTAGAGATG-ATAAAA................................................................................................................................................................................................................................................................................................	28	4	0.75	3	3	0	0	0	0	0
...............................................................................................C------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCTGC................................................................................................................................................................................................................................................................................................................................................	28	4	0.75	3	1	2	0	0	0	0
...........................................................................................................................................................TTCACG---TCTTCCCTGCTTGA-----------TGCTC-----------GC...............................................................................................................................................................................................................................................................................................................	27	4	0.75	3	0	3	0	0	0	0
..........................................................................................TAAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTC.....................................................................................................................................................................................................................................................................................................................................................	28	4	0.75	3	1	1	0	1	0	0
...................................................................................................................................................................................................................................................ATCGATGTCAACGATGTTT-TCAAAACATC.............................................................................................................................................................................................................................................	29	5	0.60	3	0	3	0	0	0	0
............................................................................................................TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCTGCC...............................................................................................................................................................................................................................................................................................................................................	28	4	0.50	2	0	2	0	0	0	0
............................................................................................................TACTT-----------------------------A--C-----AATTTTCACG---TCTTCC....................................................................................................................................................................................................................................................................................................................................................	23	4	0.50	2	0	2	0	0	0	0
..........................................................................................................................................................................CTGCTTGA-----------TGCTC-----------GTTAGAGATG-ATA...................................................................................................................................................................................................................................................................................................	26	4	0.50	2	2	0	0	0	0	0
.........................................................................................................................................................TTTTCACG---TCTTCCCTGCTTGA-----------TGC..............................................................................................................................................................................................................................................................................................................................	25	4	0.50	2	0	1	0	0	0	1
........................................................................................................................................................ATTTTCACG---TCTTCCCTGCTT..............................................................................................................................................................................................................................................................................................................................................	21	4	0.50	2	0	2	0	0	0	0
................................................................................................................T-----------------------------A--C-----AATTTTCACG---TCTTCCCTGCTTG.............................................................................................................................................................................................................................................................................................................................................	26	4	0.50	2	0	2	0	0	0	0
............................................................................................................................................................................GCTTGA-----------TGCTC-----------GTTAGAGATG-ATAAA.................................................................................................................................................................................................................................................................................................	26	4	0.50	2	2	0	0	0	0	0
...........................................................................................AAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCC...................................................................................................................................................................................................................................................................................................................................................	29	4	0.50	2	0	2	0	0	0	0
...........TTATCAG-AAATAAC---------------------------------------------TTA------------ATT-TAAATC------------..................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.50	2	0	2	0	0	0	0
...............................................................................................C------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCTG.................................................................................................................................................................................................................................................................................................................................................	27	4	0.50	2	1	1	0	0	0	0
......................................................................................................................................................................TTCCCTGCTTGA-----------TGCTC-----------GTTAGAGATG-......................................................................................................................................................................................................................................................................................................	27	4	0.50	2	2	0	0	0	0	0
...........................................................................................................................................................TTCACG---TCTTCCCTGCTTGA-----------TGCTC-----------GT...............................................................................................................................................................................................................................................................................................................	27	4	0.50	2	0	2	0	0	0	0
............................................................................................................TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCTGCT...............................................................................................................................................................................................................................................................................................................................................	28	4	0.50	2	0	2	0	0	0	0
............................................................................................AATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCC....................................................................................................................................................................................................................................................................................................................................................	27	4	0.50	2	0	2	0	0	0	0
...........................................................................................................................................................................TGCTTGA-----------TGCTC-----------GTTAGAGATG-ATAAAC................................................................................................................................................................................................................................................................................................	28	4	0.50	2	0	1	1	0	0	0
...................................................................................................................................................................................................................GATG-ATAAACATCGATGTTGGCTTGCC...............................................................................................................................................................................................................................................................................	27	5	0.40	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................TG-ATAAACATCGATGTTGGCTTGCC...............................................................................................................................................................................................................................................................................	25	5	0.40	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................AACATCGATGTTGGCTTGCCAAACATC........................................................................................................................................................................................................................................................................	27	5	0.40	2	1	1	0	0	0	0
.........................................................................................................................................................................................................................TAAACATCGATGTTGGCTTGCCAAAC...........................................................................................................................................................................................................................................................................	26	5	0.40	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................CATCGATGTTGGCTTGCCAAACATC........................................................................................................................................................................................................................................................................	25	5	0.40	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................TTGGCTTGCCAAACATCGATGTCAAC...............................................................................................................................................................................................................................................................	26	5	0.40	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................TGTTGGCTTGCCAAACATCGATGTC..................................................................................................................................................................................................................................................................	25	5	0.40	2	1	1	0	0	0	0
.........................................................................................................................................................................................................................TAAACATCGATGTTGGCTTGC................................................................................................................................................................................................................................................................................	21	5	0.40	2	0	1	1	0	0	0
.........................................................................................................................................................................................................................TAAACATCGATGTTGGCTTGCCAAACA..........................................................................................................................................................................................................................................................................	27	5	0.40	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................TTGGCTTGCCAAACATCGATGTCAACG..............................................................................................................................................................................................................................................................	27	5	0.40	2	1	0	1	0	0	0
......................................................................................................................................................................................................................................TGGCTTGCCAAACATCGATGTCAAC...............................................................................................................................................................................................................................................................	25	5	0.40	2	2	0	0	0	0	0
.............................................................................................................ACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCTGCTT..............................................................................................................................................................................................................................................................................................................................................	28	4	0.25	1	1	0	0	0	0	0
............................................................................................AATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTC.....................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0
...........................................................................................AAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTC.....................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	1	0	0	0
............................................................................................................TACTT-----------------------------A--C-----AATTTTCACG---TCTT......................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	1	0	0	0
.................................................................................................................................................C-----AATTTTCACG---TCTTCCCTGCTTGA-----------TGC..............................................................................................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0
.......................................................................................TT-TAAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTT......................................................................................................................................................................................................................................................................................................................................................	29	4	0.25	1	0	1	0	0	0	0
.......................................................................................................................................................................TCCCTGCTTGA-----------TGCTC-----------GTTAGAGC.........................................................................................................................................................................................................................................................................................................	24	4	0.25	1	1	0	0	0	0	0
..............................................................................................................................................A--C-----AATTTTCACG---TCTTCCCTGCTTGA-----------.................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0
.................................................................................................................................................C-----AATTTTCACG---TCTTCCCTGCTTGA-----------.................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	1	0	0	0	0	0
.......................................................................TTA------------ATT-TAAATC------------TACTT-----------------------------A--C-----AATTTTCAC..............................................................................................................................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0
....................................................................................................................................................................TCTTCCCTGCTTGA-----------TGCTC-----------GTTAGAGA.........................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	1	0	0	0
............................................................................................................TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCT..................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
........................................................................TA------------ATT-TAAATC------------TACTT-----------------------------A--C-----AATTTTCAC..............................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
..............TCAG-AAATAAC---------------------------------------------TTA------------ATT-TAAATC------------T.................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
......................................................................................................................................................................TTCCCTGCTTGA-----------TGCTC-----------GTTAGAG..........................................................................................................................................................................................................................................................................................................	24	4	0.25	1	1	0	0	0	0	0
............................................................................................................................................................................GCTTGA-----------TGCTC-----------GTTAGAGATG-ATA...................................................................................................................................................................................................................................................................................................	24	4	0.25	1	1	0	0	0	0	0
..............................................................................................TC------------TACTT-----------------------------A--C-----AATTTTCACG---TCT.......................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0
..........................................................................................TAAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TC........................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
..........................................................................................TAAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTT......................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
..............................................................................................TC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTC.....................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
..........................................................................................TAAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCC....................................................................................................................................................................................................................................................................................................................................................	29	4	0.25	1	0	1	0	0	0	0
.............................................................................................ATC------------TACTT-----------------------------A--C-----AATTTTCACG---T.........................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0
...........................................................................................................................................................................TGCTTGA-----------TGCTC-----------GTTAGAGATG-ATT...................................................................................................................................................................................................................................................................................................	25	4	0.25	1	1	0	0	0	0	0
.......................................................................................................................................................................TCCCTGCTTGA-----------TGCTC-----------GTTAGAGATG-C.....................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
............................................................................................AATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCT..................................................................................................................................................................................................................................................................................................................................................	29	4	0.25	1	0	1	0	0	0	0
....................................................................................................................................................................TCTTCCCTGCTTGA-----------TGCTC-----------GTT..............................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	1	0	0	0
...............................................................................................................TT-----------------------------A--C-----AATTTTCACG---TCTTCCCTGCTTGA-----------.................................................................................................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0
.......................................................................................................................................................AATTTTCACG---TCTTCCCTGCTTGA-----------TGC..............................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
................................................................................................................T-----------------------------A--C-----AATTTTCACG---TCTTCCCTGCTT..............................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
.........................................................................................................................................................................CCTGCTTGA-----------TGCTC-----------GTTAGAGATG-ATA...................................................................................................................................................................................................................................................................................................	27	4	0.25	1	1	0	0	0	0	0
...............................................................................................................TT-----------------------------A--C-----AATTTTCACG---TCTTCCCTGCT...............................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	1	0	0	0	0	0
...........................................................................................................................................................TTCACG---TCTTCCCTGCTTGA-----------TGC..............................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	1	0	0	0	0	0
..............................................................................................TC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCC....................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
...........................................................................................................................................................................TGCTTGA-----------TGCTC-----------GTTAGAGATG-ATAAACA...............................................................................................................................................................................................................................................................................................	29	4	0.25	1	1	0	0	0	0	0
....................................................................................................................................................................TCTTCCCTGCTTGA-----------TGCTC-----------GT...............................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0
.......................................................................................................................................................................TCCCTGCTTGA-----------TGCTC-----------GTTAGAGATG-AA....................................................................................................................................................................................................................................................................................................	28	4	0.25	1	1	0	0	0	0	0
...........................................................................................AAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCC.......................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
..............................................................................................TC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCC..................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
......................................................................................................................................................................TTCCCTGCTTGA-----------TGCTC-----------GTTAGAGA.........................................................................................................................................................................................................................................................................................................	25	4	0.25	1	1	0	0	0	0	0
...........................................................................................................................................................TTCACG---TCTTCCCTGCTTGA-----------TGCTC-----------GTTA.............................................................................................................................................................................................................................................................................................................	29	4	0.25	1	1	0	0	0	0	0
.......................................................................................................................................................................TCCCTGCTTGA-----------TGCTC-----------GTTAGAGATG-AT....................................................................................................................................................................................................................................................................................................	28	4	0.25	1	1	0	0	0	0	0
...............................................................................................C------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCC....................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
........................................................................................................................................................................CCCTGCTTGA-----------TGCTC-----------GTTAGAGATG-......................................................................................................................................................................................................................................................................................................	25	4	0.25	1	1	0	0	0	0	0
...............................................................................................C------------TACTT-----------------------------A--C-----AATTTTCACG---TC........................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0	0
............................................................................................................TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCTGCTT..............................................................................................................................................................................................................................................................................................................................................	29	4	0.25	1	1	0	0	0	0	0
..............................................................................................TC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCTGC................................................................................................................................................................................................................................................................................................................................................	29	4	0.25	1	1	0	0	0	0	0
......................TAAC---------------------------------------------TTA------------ATT-TAAATC------------TACTT-----------------------------A--C-----AATT...................................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
...........................................................................................AAATC------------TACTT-----------------------------A--C-----AATTTTCACG---T.........................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0
.............................................................................................ATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCT..................................................................................................................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0
........................................................................................................................................................................CCCTGCTTGA-----------TGCTC-----------GTTAGAGATG-AT....................................................................................................................................................................................................................................................................................................	27	4	0.25	1	1	0	0	0	0	0
...........................................................................................................................................................................TGCTTGA-----------TGCTC-----------GTTAGAGT.........................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................TAAACATCGATGTTGGCTTGCCAAACATC........................................................................................................................................................................................................................................................................	29	5	0.20	1	1	0	0	0	0	0
...................................................................................................................................................................................................................GATG-ATAAACATCGATGTTGGCTT..................................................................................................................................................................................................................................................................................	24	5	0.20	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................TGCCAAACATCGATGTCAACGA.............................................................................................................................................................................................................................................................	22	5	0.20	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................GTTGGCTTGCCAAACATCGATGTCAA................................................................................................................................................................................................................................................................	26	5	0.20	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................TG-ATAAACATCGATGTTGGCTTGC................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0
...............................................................................................................................................................................................................TAGAGATG-ATAAACATCGATGTT.......................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................AACATCGATGTTGGCTTGCCAAAC...........................................................................................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................TGTTGGCTTGCCAAACATCGATGTCA.................................................................................................................................................................................................................................................................	26	5	0.20	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................ATGACATCGATGTTAACATCC.......................................................................................................................................................................................................................	21	5	0.20	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................TTT-TCAAAACATCGATGACATCGATGC...............................................................................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................TGGCTTGCCAAACATCGATGTCAA................................................................................................................................................................................................................................................................	24	5	0.20	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................CTTGCCAAACATCGATGTCT.................................................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................AAACATCGATGTTGGCTTGCC...............................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................TAACATCGATGTTTCTCCACCTC........................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................TAAACATCGATGTTGGCTTGCC...............................................................................................................................................................................................................................................................................	22	5	0.20	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................TTGCCAAACATCGATGTCAACGATGC..........................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................TAAACATCGATGTTGGCTTGCCAAA............................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................AACATCGATGTTGGCTTGCCAAACA..........................................................................................................................................................................................................................................................................	25	5	0.20	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................AACATCGATGTTGGCTTGC................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................GATGTCAACGATGTTT-TCAAAACAT..............................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................ACATCGATGTTGGCTTGCCAAACATC........................................................................................................................................................................................................................................................................	26	5	0.20	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................TGGCTTGCCAAACATCGATGTCAACG..............................................................................................................................................................................................................................................................	26	5	0.20	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGACATCGATGTTAACATCGA......................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................TAACATCGATGTTTCTCCACC..........................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................TG-ATAAACATCGATGTTGGCTTGCCA..............................................................................................................................................................................................................................................................................	26	5	0.20	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................TTT-TCAAAACATCGATGACATCGA..................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................TGTTT-TCAAAACATCGATGACATC....................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................GTTT-TCAAAACATCGATGACA......................................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................ACATCGATGTTTCTCCACCTC........................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0
...........................................................................................................................................................................TGCTTGA-----------TGCTC-----------GTTAAT...........................................................................................................................................................................................................................................................................................................	18	10	0.10	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................AACATCGATGTTTCTCCACC..........................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................CATCGATGTTTCTCCACCTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	22	20	0.05	1	1	0	0	0	0	0

droBip1

AAGTAATT---TA-TCGG-AAATAAC---------------------------------------------TTA------------ATT-TAAATC------------TACTT-----------------------------A--C-----AATTTTCACG---TCTTCCCTTCTTAA-----------TGCGC-----------GTTAGAGATG-AAAAACATCGATGTTGCCTGGTAAAACATCGATCTTTCCGATGTTT-CGAAAACATCGA---------TGTTGGCATCGATGTTTCTCCACCTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TTCCACGAAATTAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATGTCTGGGTCCGAAGATGATGACTGGTTTACAAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.TCCACGAAATTAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATGTCTG............................	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGGTCCGAAGATGATGAC...........	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCCGGGTCCGAAGATGATGACTGGTTTACAAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

TATTCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------CGCTATAACAATATTTCATCATGTCAGACTCG---GATGACGATTGGTTTACAAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCAGACTCG---GATGAC..............	18	1	5.00	5	5	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCATGTCAGACTCG---GATGAC..............	25	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTCATCATGTCAGACTCG---GA..................	24	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCATGTCAGACTCG---GA..................	19	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCAGACTCG---GATGACGATTGGTT......	26	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCATGTCAGACTCG---GATG................	21	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGACTCG---GATGACGATTG.........	22	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGACTCG---GATGACGATTGGT.......	23	1	1.00	1	0	0	0	0	1

droVir3

CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGTCGGACTCG---GATGATGATTGGTTCAATAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCG---GATGATGATTGGTTC.....	21	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCGGACTCG---GATGATGATTGGTT......	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCG---GATGATGATTGGTTCA....	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGACTCG---GATGATGAT...........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGGACTCG---GATGATGATTGGTTC.....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACTCG---GATGATGATTG.........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAATAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTATGTCTGACTCT---GATGACGATTGGTTCAACAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTATGTCTGACTCT---GAT.................	21	1	1.00	1	0	0	0	0	0	1

droGri2

AAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATCACAATGTCTGACTCG---GATGATGATTGGTTCAAAAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGACTCG---GATGATGATTGG........	22	1	1.00	1	1	0

dsi_10750

3r:19556758-19556939 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads