ID:

dsi_10747

 Coordinate:

x:8345302-8345451 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-43.2 -43.2 -43.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+

Sense Strand Reads

GCGAGGAAGAAGAAGAATCGTGAAGCAAGAAGAAGCGAAAACAAACTGCGGTTGGTATTCTCAACATTCAAACACAAGTTTTTTTTAAGTCCAAAAACTAAAGTTAAGCGCACCTGCACACAGGTGTGCGTGCGTATGTGTGTGTGTGTGTGAAGCTGTGTCTTTCGCGCGCCTGTGTGAGTGTCGGTGTGTGTGTGCCAGTGTGAGTGACCAGAGGTGGACAGTCAACGGCTTTTCTAAATTGACATAC
**************************************************..((((((...((((((((..((((((((((((.........)))))))...((...(((((((((....)))))))))..))............((((((((((.......)))))))))).))))))))))).....))...))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR902009
testis
 O001
Testis
.........................................................................................................................................................................CGCCTGTCTGAGGGTCGGT.............................................................. 19 2 1 1107.00 1107 833 274 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GCCTGTCTGAGGGTCGGT.............................................................. 18 2 2 153.50 307 249 55 0 0 2 0 0 0 1 0 0 0
...........................................................................................................................................................................CCTGTCTGAGGGTCGGT.............................................................. 17 2 7 120.86 846 696 143 0 0 5 0 0 0 2 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAGCGTCGCT.............................................................. 19 3 14 51.71 724 15 8 676 1 4 10 0 6 4 0 0 0
.......................................................................................................................................................................CACGCCTGTCTGAGGGTCGGT.............................................................. 21 3 4 44.75 179 140 38 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................ACGCCTGTCTGAGGGTCGGT.............................................................. 20 3 6 33.83 203 150 53 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTTTGAGGGTCGGT.............................................................. 19 2 1 18.00 18 13 5 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAGGGTCGG............................................................... 18 2 6 6.83 41 28 13 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GCCTGTTTGAGGGTCGGT.............................................................. 18 2 1 6.00 6 4 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAGTGTCGGT.............................................................. 19 1 1 6.00 6 5 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CCTGTCTGAGTGTCGGT.............................................................. 17 1 2 3.50 7 4 3 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................ACGCCTGTTTGAGGGTCGGT.............................................................. 20 3 2 3.50 7 6 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAGCGTCGGT.............................................................. 19 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CACGCCTGTTTGAGGGTCGGT.............................................................. 21 3 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTTAGGGTCGGT.............................................................. 19 3 5 2.80 14 11 3 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CCTGTTTGAGGGTCGGT.............................................................. 17 2 7 2.57 18 14 4 0 0 0 0 0 0 0 0 0 0
........GAAGAAGAATCGTGAAGCAAGAAGA......................................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CACGCCTGTCTGAGGGTCGGTG............................................................. 22 3 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGTCTGTCTGAGGGTCGGT.............................................................. 19 3 20 1.75 35 23 10 0 0 0 0 0 0 2 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAGCGTCG................................................................ 17 2 11 1.64 18 12 5 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................CGCTTGTCTGAGGGTCGGT.............................................................. 19 3 10 1.60 16 12 4 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GCACGCCTGTTTGAGTGTCGT............................................................... 21 3 2 1.50 3 1 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................CCCGCCTGTCTGAGGGTCGGT.............................................................. 21 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GCCTGTCTGAGGGTCGG............................................................... 17 2 13 1.46 19 17 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CACGCCTGTCTGAGGGTCGG............................................................... 20 3 6 1.33 8 5 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAGTGTCGCT.............................................................. 19 2 3 1.33 4 1 1 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GTGTTTGTGAGTGCAGCTGTGT......................................................................................... 22 3 19 1.32 25 3 0 0 0 0 19 0 0 1 2 0 0
........GAAGAAGAATCGTGAAGC................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........GAAGAATCGTGAAGCAAGAAGA......................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................GCACGCCTGTCTGAGGGTCGGT.............................................................. 22 3 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.CGAGGAAGAAGAAGAATC....................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........GAAGAATCGTGAAGCAAGAAGAAGC...................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CACGCCTGTTTGAGGGTCGG............................................................... 20 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAGAGTCGGT.............................................................. 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............AAGAATCGTGGAGCTAGA............................................................................................................................................................................................................................ 18 2 2 1.00 2 0 0 1 0 0 0 0 1 0 0 0 0
................ATCGTGAAGCAAGAAGAAGCGAAAACA............................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................AAGAGAACCTGCACACAGGT............................................................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........GAAGAATCGTGAAGCAAGA............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...AGGAAGAAGAAGAATCGTGAAGCAAGAAGA......................................................................................................................................................................................................................... 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.....GAAGAAGAAGAATCGTGAAGCAAGAA........................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..............GAATCGTGAAGCAAGAAGAAGC...................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................AAGAGAACCTGCACACAGG.............................................................................................................................. 19 2 2 1.00 2 0 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................CGCCTGTGTGAGGGTCGGT.............................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGTGTGTGTGTGAAGCTGTGTCTTT..................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................TATGTGTGTGTGTGTGTGAAG............................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................CTCCTGTCTGAGGGTCGGT.............................................................. 19 3 11 0.91 10 6 4 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CACGCCTGTTTGAGTGTCGT............................................................... 20 3 6 0.83 5 5 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTTTCTGAGGGTCGGT.............................................................. 19 3 9 0.78 7 1 6 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CACGCCTGTCTGAGCGTCGGT.............................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................ACGCCTGTGTGAGGGTCGGT.............................................................. 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GAGAACCTGCACACAGGTG............................................................................................................................ 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GCCCGCCTGTCTGAGGGTCGGT.............................................................. 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........AAGTAGAATCGTGTAGCAGGA............................................................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CACGCCTGTCTGAGTGTCGGT.............................................................. 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CCCCTGTCTGAGGGTCGGT.............................................................. 19 3 8 0.50 4 3 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TGCCTGTTTGAGTGTCGGT.............................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................ACGCCTGTCTGAGGGTCGG............................................................... 19 3 13 0.46 6 6 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CCACGCCTGTCTGAGTGTCGGT.............................................................. 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAATGTCGGT.............................................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAGGGTCGGTC............................................................. 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................GCGCTTGTCTGAGGGTCGGT.............................................................. 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ACAAGATTTTTTTTAGTCC.............................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................GGGGACCTGCACACAGGTGC........................................................................................................................... 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................CCTGTCTTAGTGTCGGT.............................................................. 17 2 10 0.30 3 3 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CTGTCTGAGTGTCGGT.............................................................. 16 1 7 0.29 2 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAGGGTTGGT.............................................................. 19 3 14 0.29 4 4 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AGCCTGTCTGAGGGTCGGT.............................................................. 19 3 7 0.29 2 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GCCTGTATGAGGGTCGGTT............................................................. 19 3 8 0.25 2 0 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TGTCTGAGTGTCGGT.............................................................. 15 1 20 0.25 5 3 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTCAGGGTCGGT.............................................................. 19 3 12 0.25 3 2 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAGCGTCGCTG............................................................. 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................AGAACCTGCACACAGGTG............................................................................................................................ 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAGGGGCGGT.............................................................. 19 3 12 0.25 3 3 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................GCGCCTGTCTGAGCGTCGCT.............................................................. 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GCACGCCTGTTTGAGCGTC................................................................. 19 3 9 0.22 2 0 0 0 0 0 0 0 2 0 0 0 0
..........................................................................................................AGAGAACCTGCACACAGG.............................................................................................................................. 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CCTGTCTGAGAGTCGGT.............................................................. 17 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AGGGAACCTGAACACAGGTG............................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCTTGTTTGAGGGTCGGT.............................................................. 19 3 14 0.14 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GCCTGTGTGAGCGTCGCT.............................................................. 18 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................ACGCCTGTTTGAGTGTCGT............................................................... 19 3 17 0.12 2 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCCGAGGGTCGGT.............................................................. 19 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TGCCTGTCTGAGTGTCGGT.............................................................. 19 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GCCTGTTTGAGCGTCGCT.............................................................. 18 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGACTGTCTGAGGGTCGGT.............................................................. 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
............................................................TGAACATTCTAACACAGGT........................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0
.............................................................................................................................................................................................................................CAGTCAAGGGCTTTTCGCAA......... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................CACCTGTCTGAGGGTCGGT.............................................................. 19 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAGCGTCGTT.............................................................. 19 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTTTGAGCGTCGCT.............................................................. 19 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GCCTGTCTGAGCGTCGCTG............................................................. 19 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGCCTGTCTGAGGATCGGT.............................................................. 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GCCTGTTTGAGTATCGGTT............................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................CCCGCGCCTGGGTGAGTA................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCACCGGCTTTTATAAA......... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................CCTGTTTGAGGGTCGG............................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GTGTGTGTGTGTGAAG............................................................................................... 16 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................GCCTGTCTAAGGGTCGGT.............................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGCTCCTTCTTCTTCTTAGCACTTCGTTCTTCTTCGCTTTTGTTTGACGCCAACCATAAGAGTTGTAAGTTTGTGTTCAAAAAAAATTCAGGTTTTTGATTTCAATTCGCGTGGACGTGTGTCCACACGCACGCATACACACACACACACACTTCGACACAGAAAGCGCGCGGACACACTCACAGCCACACACACACGGTCACACTCACTGGTCTCCACCTGTCAGTTGCCGAAAAGATTTAACTGTATG
**************************************************..((((((...((((((((..((((((((((((.........)))))))...((...(((((((((....)))))))))..))............((((((((((.......)))))))))).))))))))))).....))...))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
.................................................................................AAAAATTCAGGTTTT.......................................................................................................................................................... 15 0 3 0.33 1 1 0 0 0 0
............................................................AGTTTTAAGTCTGTGTTCGAAA........................................................................................................................................................................ 22 3 3 0.33 1 1 0 0 0 0
................................................................................AAAAAATTCAGGTTTAT......................................................................................................................................................... 17 1 4 0.25 1 0 0 1 0 0
.............................................................GTTTTAAGTCTGTGTTCGAAA........................................................................................................................................................................ 21 3 5 0.20 1 1 0 0 0 0
..........................................................AGAGTTGTAAGGTTGT................................................................................................................................................................................ 16 1 6 0.17 1 0 1 0 0 0
..........................................................AGAGTTGTAAGGTTGTGG.............................................................................................................................................................................. 18 2 6 0.17 1 0 1 0 0 0
................................................................................................................................GCATGCATACACACACACAC...................................................................................................... 20 1 20 0.05 1 0 0 0 1 0
...............................................................................AAAAAACTTCAGGTT............................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 1
..................................................................................AAAATTAAGGGTTTTGATT..................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:8345252-8345501 - dsi_10747 GCGAG---GAAGAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----A---AACAAACTGC---GGTTGGTATTCTCAAC--------ATTC----------------------------------------------------------AAACACAAG----TT-------------------TT--TTTTAAGTC-CAAAAACTAAAGTTAAGCGCACCTGCACACAGGTGT------------------------GCGTGC--------GTATG--------TGTGTGTGTGTGTGAA--GCTGTGT--------CTT----TCGCG-------------CGC-------C-TGTGTGAGTGTCG--------GTG-TGTG------------------------TGTG--------------CCA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATAC
droSec2 scaffold_34:156313-156559 - GCGAG---GAAGAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----A---AACAAACTGC---GGTTGGTATTCTCAAC--------ATTA----------------------------------------------------------AAACACAAG--CTT--------------------TT--TTTTAAGTC-CAAAAACTAAAGTTAAGCGCACCTGCACACAGGTGT------------------------GCGT--------------G--------TGTGTGTGTGTGTGAA--GCTGTGT--------CTT----TCGCG-------------CGC-------C-TGTATGAGTGTCG--------GTG-TGTGTG----------------------TGTG--------------CCA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATAC
dm3 chrX:8785378-8785644 - GCGAG---GAAGAA---GAAG---------------------------------------AA----------------------------TTGT---GAAG-CAAGAAG---AAGCG---A-----A---AACAAACTGC---GGTTGGTATTCTCAAC--------ATTC----------------------------------------------------------AAACACAAG--A-TTT------------------TT--TTTTAAGTC-CAAAAACTAAAGTTAAGCGCACCTGCACACAGGTGT------------------------GCATGT--------GCATG--------TGTGTGTGTGTGTGAA--GCTGTGT--------CTT----TCGCGTGCCTATGT---GCGC-------C-TGTGTGAGTGCCG--------GTG-TATATGTGTGC-------------------TG--------------CCA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATAC
droEre2 scaffold_4690:6315248-6315508 + GCGAGGAGGAAGAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----A---AACAAACTGC---GGTTGGTATTTTCAAC--------ATTC----------------------------------------------------------AAAGACAAC--CATT-------------------TT--TTTGAAGTC-CCAAAACTAAAGTTAAGCGCACCTGCAC--AGGTGT------------------------GTGT----GC----GGGTT------GGTTTGTGTGTGTGTGAA--GCTGTGT--------GTT----TCGCGTGCTTGTGT---GCAC-------C-TGTGTGAGTGTCG--------GTG-----------------------------TGTG--------------CCA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATAC
droYak3 X:12517433-12517698 + GCGAG---GAAGAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----A---AACAAACTGC---GGTTGGTATTTTCAAC--------ATTC----------------------------------------------------------AAAGACAACTTCTTTTT-----------------TT--TTTTAAGTC-CAAAAACTAAAGTTAAGCGCACCTGCAC--AGGTGT------------------------GTGT--CC------GTGTT----T-GTTTTGTGTGTGTGTGAA--GCTGTGT--------GTT----TTGTGTGCTTGTGTGGTGCAC-------C-TGTGTGAGTGTCG--------CTG-----------------------------TGTG--------------CCC-----------GTGTTAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATAC
droEug1 scf7180000408176:214661-214927 - AAGAA---GAA---GA--AAG---------------------------------------CA----------------------------AGGA---GAAG--AGGAAG---AAGCA--AA-----A---AACAAACTGC---GGTTGGTATTC--AAC--------ATTC----------------------------------------------------------AAACACCTT--CATTTTTTTGTTCGTTGTTGTTG-TTGCCTTAAGTC-G-AAAACTAAAGTTAAGCGCACCTGTAGAC--GTGT--------------------------AT--------------G--------TGTGTGAGTGTGTGT-----------------------------GTGCCTG--T----TAC-------CTATCTTACCTATCG--------GTG-----------------------------TGTGCCAGTGCTAGT----TATTGTTGTTGTTGTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATAC
droBia1 scf7180000301760:2519862-2520127 - GAGAA---GAA---GAAGAAG---------------------------------------CAGGCGCAG-------------GGAAG-AATCGT---AGAG-CAAGAAG---AAGCG---------A---CACAAACTGC---GGTTGGTATTC--GGC--------ACTC----------------------------------------------------------A-ACACA------TT--------------------T--TCATAAGTC-T-AAGACTAAAGTTAGGCGCACCTGTGTTGG---------GCGC----------------------------------G--------TGAGTGTGCCTGT-----GCTGTGC----------TTGGCTAGTGTGCCTGTGC---CCAC-------C-TGTGTGAGTGTCG--------GTG-TGCGAGTGTGC--------------------GCCAGTG------CGCCA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAACTGACATAC
droTak1 scf7180000415843:181487-181748 - GAGAA---GAA---GAGGAAG---------------------------------------CAGAAGAAG-------------AAGAG-TATCGT---AAAT-CAAGAAG---AAGCA---A-----A---AACAAACTGC---GGTTGGTATTC--AAC--------AAT---------------------------------------------------------TCAAACACA------TTT------------------TT--TGTTAAGTCTCAAAAACTAAACTTAAGCGCACCTGTATTGA---------GTGA------------------GT--------------G--------TGAGTGAGTGTG--------------------------------GTGAATGTGT----TAC-------C-TGTGAGAGTGTCGGTGTGA--GTGGTGTAAGTGTGAGA----------------GTG------------CCTTA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATAC
droEle1 scf7180000491006:2288840-2289054 - GAGAA------------GAAG---------------------------------------AA----------------------------TCG----AAAG-CGAGAAG---AAGCA---A-----A---AACAAACTGC---GGTTGGTATTC--AAC--------ATTC----------------------------------------------------------AAACACA------TT------------------------TTTAAGTC-T--AAACTAAAGTTAAGCACAC--------AGGTGT------------------------GAAT--------------G--------TGTGTGTGTG------------------------------------------------TACCTGTGC-C-CGTGTGAGTGTCA--------GTG-----------------------------TGTGCCAGTGCGAGTGCCTTA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAACTGACATAC
droRho1 scf7180000779841:292047-292262 - CAGAA---GAA------GAAG---------------------------------------AA----------------------------TCGA---AAAG-CAAGAAG---AAGCA---A-----A---AACAAACTGC---GGTTGGTATTC--AAC--------ATTT----------------------------------------------------------AAACACA------TT------------------------TTTAAGTC-T-AAAACTAAAGTTAAGCACAC--------AGGTGT------------------------ACAT--------------G--------TGTGTA----------------------------------------------------TACCTGTGG-C-CGTGTGAGTGTCG--------GTG-----------------------------TGTGCCAGTGCGAGTGCCTTA-----------GTGTGAGTGACCAGAGGTTG---ACAGTCAACGGCTTTTCTAAACTGACATAC
droFic1 scf7180000453829:760874-761118 - AAGAA------------GAAG---------------------------------------AA----------------------------TCGA---AAAG-CAAGAAG---AGGCG--AA-----A---AACAAACTGC---GGTTGGTATTC--AAC--------ATTC----------------------------------------------------------AAACACA----CATT------------------------TTTAAGTC--AAAAACTAAAGTTAAGCGCACCTGAGT------CT------------------------GCGT----GCAGAT----G--------TGTTAGAGTGTGTG------TGTGT--------GTT----TT--G-------------TACCCGTGC-C-AGTGTGAGTGT------GACGGTG-----------------------------TGTGCCAGTGCAAGTGGCTTA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATAC
droKik1 scf7180000302441:25975-26214 - AAGAA---GAA---GAAGCAG---------------------------------------CAGCAGAAG-------------AAGCGG--------------C-GGCAA---CAACA---A-----AAACAAGAAACTGC---GGTTGGTATTT--AACCATTTTTCATTT----------------------------------------------------------AAAGTCA------TTT------------------TC--T-----------TCTACTTAACTTAAGCGCACCTGACTGCAGGTGT------------------------GTGT--------------------------GTGTGTTTGCCCA--GCAGTGA----------------TGCG---------------T-------G-AGTGTGAGTGCTG--------------CGAGTGTG------------------TGTG--------------TTA-----------GTGTGAGTGGACAGAGGTGGACGACAGTCAACGGCTTTTCTAAATTGACATAC
droAna3 scaffold_13047:630958-631191 - CCCAG-AGGAAGCA---GCAG---------------------------------------AT---CAGCGAGCAGCCTGCAGGA----------------T-CCCCCAG---AATCG---A-----AAGCAGCGAACTGC---GGTTGGTATTT--GA--------------------------------------------------------------------------------------------------------------------------------AGCTGAAGCGCACCTGAGTGCATATGC------------------------TCCGGT--------GCAAG--------AGAGTGAGTGAGCGAG--TCAGCA----------------------G-------------CTTGTGAGCGAGCGAGCGTCTCG--------GTG-TGTGAGTGCGAGAG--------------AG-----------------TG-----------GAGTGACCGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAACTGACATAC
droBip1 scf7180000396431:419203-419423 - CTGAC---CCC---AGAGGAG---------------------------------------CAGCCTAA------------AGGATCTT--------------C-CCCAA---AATCG---A-----AAGCAACAAACTGC---GGTTGGTATTC--CA--------------------------------------------------------------------------------------------------------------------------------GGCCCAAGCGCACCTGAGTGCATGTGC------------------------TCTC------ATATGCGAGAGAGTGACTGAGCGAGTGAGTGAG--TCTGTTT--------GTC--------------------------------------------TCG--------GTG-TGTGAGTGCGAGAG--------------CGTG--------------CGA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATAC
dp5 XL_group1e:8058451-8058627 - GAA---------------------------------------------------------------------------------------------------------------GAA---A-----A---CAGAAACTGC---GGTTCGTATTTTATTT--------ATTC----------------------------------------------------------TAAAA----------------------------------TTCAAATT-CAAAACTTAAATCTGGTCACACTTGCGCCCA---------GTATGCAAAAGGCGGCGTCTCT----CTCTCCCT------------------------------------------------------------------------------------CTCTTGGTGTGT--------G-------TG----------TGTGTGTGTGTG--------------------------------------------TGTGGTGG---ACAGTCGACGACTTTTCTAAATTGACATAC
droPer2 scaffold_13:507678-507887 + GAGTG---TGTGTA---GGTG---------------------------------------TA----------------------------TTCTGCACATG-TGGATTG---AAGAA---A-----A---CAGAAACTGC---GGTTCGTATTTT---T--------ATTC----------------------------------------------------------TAAAA----------------------------------TTCAAATT-CAAAACTTAAATCTGCTCACACTTGCGCCCA---------GTATGCAAAAGGCGGCGTCTCT----CTCTCCCT---------------------------------------------------------------------------------C-TCTTTGCGTGTGT--------G-----------------TGTGTGTGTGTGTG--------------------------------------------TGTGGTGG---ACAGTCGACGACTTTTCTAAATTGACATAC
droWil2 scf2_1100000004963:965416-965621 + CAAAC---GGA---A--AAAG---------------------------------------TA----------------------------TCAA---AAGTGCAATAAT---AAACACAAA-----T---TAAAAACTGC---GGTTGGTATTA---AC--------ATGAGAAATAATAATGA-TAAAAAAAGAAAAATGCAAAACTACAAT--------------TCAATCTAA------TGT------------------AA--TGATTAGTG-----------------GCATACCCATGGACATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTA-----------GTTATAGTTGCAGATAGTGG---ACAGTCAACGGCATTTCTAAATTGACATAC
droVir3 scaffold_12726:2635982-2636226 - AAAAA---CAA---CAACAACAACAACAACTACTACTACAACAAAAATAATAACAATAACAA----------------------------TTAC---GACA-ACAGCAG------CA---G-----C---AACAAATTGCTTGGGTTGGTATAAAAAAA--------ATAT----------------------------------------------------------ATATATA------T--------------------GT--ATTGAATTT-AACAAATTAAA--------CACATGCATAGAAATGGCCCATT----------GTGTGTGTGT----GAGTGCCT-------------------------------------------------------------------------G----------CTGTGTGTGTGT--------G-----------------TGTGTGTTTGTGTG--------------------------------------------TGCGTTGT---CCAGTCAACGGCTTTTCTAAATTGACATAC
droMoj3 scaffold_6473:5850410-5850639 + AACAA---TTA---AAAGAAC---------------------------------------TACAAGAAA---------------------CAGA---ACAA-CAAGAAG---AA-CA---A-----C---AACAAATTGCTTGGGTTGGTATTA--CAA--------ATAT-----------ATTGGCT----T-------------------ATATATATATAAAT--ATATATA------T--------------------GT--A----------------T------------------ATAGAGATGTGCAATG----------T------------------------------------TGT--ATGTGCCCA--AGTCTCATATGTGAA--C----ATGCA-------------GGC-------C-TGCATGTGTGTGT--------G-----------------TGTGTGTGTGTGTG--------------------------------------------TGCGTTGT---CCAGTCAACGGCTTTTCTAAATTGACATAC
droGri2 scaffold_15203:7490499-7490710 + GCAAA---CGA---GGGCAAG---------------------------------------CG----------------------------CCCA---AAGG-TATGCAATGCAAATGCAAATGCGAATGCTGCCAGCTGC---TCCTG---TTGT---------------------------GCTTGACACACTCAAAACGCCA------------------------------------------------------------------------------------------GACATTT--------GTGT------------------------GTGTGT--------GTGTG--------TGTGTGTGTGTGTGAACACTTGCTT--------TTA----TTGAG-------------TGG-------C-TGTCCCAGTGTGT--------G-------TGTG------TGTG----------TG------------------T-----------GTGTGTGTGTGTCGCAGCAG---GCACTCGCCAGCTT----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCGAG---GAAGAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----A---AACAAACTGC---GGTTGGTATTCTCAAC--------ATTC----------------------------------------------------------AAACACAAG----TT-------------------TT--TTTTAAGTC-CAAAAACTAAAGTTAAGCGCACCTGCACACAGGTGT------------------------GCGTGC--------GTATG--------TGTGTGTGTGTGTGAA--GCTGTGT--------CTT----TCGCG-------------CGC-------C-TGTGTGAGTGTCG--------GTG-TGTG------------------------TGTG--------------CCA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........GAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00201100000000000000
...........GAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.................GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.CGAG---GAAGAA---GAAG---------------------------------------AA----------------------------TC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.................GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
.............................................................A----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----A---AACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.................GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
...AG---GAAGAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000000000001000
........GAAGAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
....................G---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGAA--GCTGTGT--------CTT----T.......................................................................................................................................................................2511.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................TATG--------TGTGTGTGTGTGTGAA--G.............................................................................................................................................................................................2111.00100001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGAA--G.............................................................................................................................................................................................16200.05100000000001000000
droSec2
GCGAG---GAAGAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----A---AACAAACTGC---GGTTGGTATTCTCAAC--------ATTA----------------------------------------------------------AAACACAAG--CTT--------------------TT--TTTTAAGTC-CAAAAACTAAAGTTAAGCGCACCTGCACACAGGTGT------------------------GCGT--------------G--------TGTGTGTGTGTGTGAA--GCTGTGT--------CTT----TCGCG-------------CGC-------C-TGTATGAGTGTCG--------GTG-TGTGTG----------------------TGTG--------------CCA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................CGT---GAAG-CAAGAAG---AAGCG---A-----A---AACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030120
...........................................................................................CGT---GAAG-CAAGAAG---AAGCG---A-----A---AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020020
.............................................................A----------------------------TCGT---GAAG-CAAGAAG---AAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
...........GAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
............................................................................................GT---GAAG-CAAGAAG---AAGCG---A-----A---AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
...........................................................................................................AG---AAGCG---A-----A---AACAAACTGC---.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
....................G---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGCG---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
...........GAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.............................................................A----------------------------TCGT---GAAG-CAAGAAG---AAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..........AGAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000
.......................................................................................................AAGAAG---AAGCG---A-----A---AACAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
GCGAG---GAAGAA---GAAG---------------------------------------AA----------------------------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.................GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.............................................................A----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...........GAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
............................................................AA----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.................................................................................................GAAG-CAAGAAG---AAGCG---A-----A---AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.............A---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
.......................................................................................................AAGAAG---AAGCG---A-----A---AACAAACTGC---.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
......................................................................................................CAAGAAG---AAGCG---A-----A---AACAAACTGC---.............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
dm3
GCGAG---GAAGAA---GAAG---------------------------------------AA----------------------------TTGT---GAAG-CAAGAAG---AAGCG---A-----A---AACAAACTGC---GGTTGGTATTCTCAAC--------ATTC----------------------------------------------------------AAACACAAG--A-TTT------------------TT--TTTTAAGTC-CAAAAACTAAAGTTAAGCGCACCTGCACACAGGTGT------------------------GCATGT--------GCATG--------TGTGTGTGTGTGTGAA--GCTGTGT--------CTT----TCGCGTGCCTATGT---GCGC-------C-TGTGTGAGTGCCG--------GTG-TATATGTGTGC-------------------TG--------------CCA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGAGGTGG---ACAGTCAACGGCTTTTC.............28112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012
..........................................................................................TTGT---GAAG-CAAGAAG---AAGCG---A-----A---AACAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2916.0060000000000000000000000000000000000000000000000000000000000000000000000000000021210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AG---AAGCG---A-----A---AACAAACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000100000001000000000000000000000000000100100000000000000000000000000000000000
..................AAG---------------------------------------AA----------------------------TTGT---GAAG-CAAGAAG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..GAG---GAAGAA---GAAG---------------------------------------AA----------------------------TTGT---GAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCTATGT---GCGC-------C-TGTGTGAGTG................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000100000000000000100
...........................................................................................TGT---GAAG-CAAGAAG---AAGCG---A-----A---AACAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000011110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGTGG---ACAGTCAACGGC..................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000010
........GAAGAA---GAAG---------------------------------------AA----------------------------TTGT---GAAG-CAAGAAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AGAA---GAAG---------------------------------------AA----------------------------TTGT---GAAG-C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CTATGT---GCGC-------C-TGTGTGAGTGC...............................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000001000010000000000000000
.............A---GAAG---------------------------------------AA----------------------------TTGT---GAAG-CAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AAG---------------------------------------AA----------------------------TTGT---GAAG-CAAGAAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AG---------------------------------------AA----------------------------TTGT---GAAG-CAAGAAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................AGAAG---AAGCG---A-----A---AACAAACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGC-------------------TG--------------CCA-----------GTGTGAGTG............................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000
.............................................................A----------------------------TTGT---GAAG-CAAGAAG---AAGCG---A-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATGT---GCGC-------C-TGTGTGAGTG................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGAGTGCCG--------GTG-TATATGT..........................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
....................G---------------------------------------AA----------------------------TTGT---GAAG-CAAGAAG---AAGCG---A-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.............A---GAAG---------------------------------------AA----------------------------TTGT---GAAG-CAAGAAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............A---GAAG---------------------------------------AA----------------------------TTGT---GAAG-CAAGAAG---AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
........................................................................................................................................................................TTC----------------------------------------------------------AAACACAAG--A-TTT------------------TT--TTTTAAGT.........................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................A----------------------------TTGT---GAAG-CAAGAAG---AAGCG---A-----A---AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000
...........GAA---GAAG---------------------------------------AA----------------------------TTGT---GAAG-CAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGC-------------------TG--------------CCA-----------GTGTGAGTGAC..........................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
............................................................AA----------------------------TTGT---GAAG-CAAGAAG---AAGCG---A-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............A---GAAG---------------------------------------AA----------------------------TTGT---GAAG-CAAGAAG---AAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................T---GAAG-CAAGAAG---AAGCG---A-----A---AACAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TGT---GAAG-CAAGAAG---AAGCG---A-----A---AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CTATGT---GCGC-------C-TGTGTGAGTG................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010
............................................................AA----------------------------TTGT---GAAG-CAAGAAG---AAGCG---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000000
...........................................................................................TGT---GAAG-CAAGAAG---AAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................AAG---AAGCG---A-----A---AACAAACTGC---GGTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000
.........AAGAA---GAAG---------------------------------------AA----------------------------TTGT---GAAG-C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................G---------------------------------------AA----------------------------TTGT---GAAG-CAAGAAG---AAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000
..................AAG---------------------------------------AA----------------------------TTGT---GAAG-CAAGAAG---AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droEre2
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droYak3
GCGAG---GAAGAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----A---AACAAACTGC---GGTTGGTATTTTCAAC--------ATTC----------------------------------------------------------AAAGACAACTTCTTTTT-----------------TT--TTTTAAGTC-CAAAAACTAAAGTTAAGCGCACCTGCAC--AGGTGT------------------------GTGT--CC------GTGTT----T-GTTTTGTGTGTGTGTGAA--GCTGTGT--------GTT----TTGTGTGCTTGTGTGGTGCAC-------C-TGTGTGAGTGTCG--------CTG-----------------------------TGTG--------------CCC-----------GTGTTAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATACSizeHit CountTotal NormTotalM026
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Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
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...........GAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
............................................................AA----------------------------TCGT---GAAG-CAAGAAG---AAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.................GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..........................................................................................................AAG---AAGCG---A-----A---AACAAACTGC---.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...........................................................................................CGT---GAAG-CAAGAAG---AAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.00201000100000
.......................................................................................................AAGAAG---AAGCG---A-----A---AACAAACTGC---.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.............A---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................T----TTGTGTGCTTGTGTGGTGCAC-------C-T.........................................................................................................................................2411.00100100000000
.......................................................................................................AAGAAG---AAGCG---A-----A---AACAAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
..........AGAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
...........................................................................................CGT---GAAG-CAAGAAG---AAGCG---A-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
....................G---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
...................AG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
...................AG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----A---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001
............................................................AA----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----A---AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
............AA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---AAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
.................GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..........AGAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...........................................................................................CGT---GAAG-CAAGAAG---AAGCG---A-----A---AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.................................................................................................GAAG-CAAGAAG---AAGCG---A-----A---AACAAACTGC---.............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
............................................................................................GT---GAAG-CAAGAAG---AAGCG---A-----A---AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.............................................................A----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----A---AACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
GCGAG---GAAGAA---GAAG---------------------------------------AA----------------------------TC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGAA--GCTGTGT--------GTT----........................................................................................................................................................................1911.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------GTGTTAGTGACCAGAGGTGG---AC............................2311.00100000010000
............................................................AA----------------------------TCGT---GAAG-CAAGAAG---AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
............................................................................................GT---GAAG-CAAGAAG---AAGCG---A-----A---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..........AGAA---GAAG---------------------------------------AA----------------------------TCGT---GAAG-CAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.............................................................A----------------------------TCGT---GAAG-CAAGAAG---AAGCG---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.............................................................A----------------------------TCGT---GAAG-CAAGAAG---AAGCG---A-----A---AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
droEug1
AAGAA---GAA---GA--AAG---------------------------------------CA----------------------------AGGA---GAAG--AGGAAG---AAGCA--AA-----A---AACAAACTGC---GGTTGGTATTC--AAC--------ATTC----------------------------------------------------------AAACACCTT--CATTTTTTTGTTCGTTGTTGTTG-TTGCCTTAAGTC-G-AAAACTAAAGTTAAGCGCACCTGTAGAC--GTGT--------------------------AT--------------G--------TGTGTGAGTGTGTGT-----------------------------GTGCCTG--T----TAC-------CTATCTTACCTATCG--------GTG-----------------------------TGTGCCAGTGCTAGT----TATTGTTGTTGTTGTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATACSizeHit CountTotal NormTotal
No Reads
droBia1
GAGAA---GAA---GAAGAAG---------------------------------------CAGGCGCAG-------------GGAAG-AATCGT---AGAG-CAAGAAG---AAGCG---------A---CACAAACTGC---GGTTGGTATTC--GGC--------ACTC----------------------------------------------------------A-ACACA------TT--------------------T--TCATAAGTC-T-AAGACTAAAGTTAGGCGCACCTGTGTTGG---------GCGC----------------------------------G--------TGAGTGTGCCTGT-----GCTGTGC----------TTGGCTAGTGTGCCTGTGC---CCAC-------C-TGTGTGAGTGTCG--------GTG-TGCGAGTGTGC--------------------GCCAGTG------CGCCA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAACTGACATACSizeHit CountTotal NormTotal
No Reads
droTak1
GAGAA---GAA---GAGGAAG---------------------------------------CAGAAGAAG-------------AAGAG-TATCGT---AAAT-CAAGAAG---AAGCA---A-----A---AACAAACTGC---GGTTGGTATTC--AAC--------AAT---------------------------------------------------------TCAAACACA------TTT------------------TT--TGTTAAGTCTCAAAAACTAAACTTAAGCGCACCTGTATTGA---------GTGA------------------GT--------------G--------TGAGTGAGTGTG--------------------------------GTGAATGTGT----TAC-------C-TGTGAGAGTGTCGGTGTGA--GTGGTGTAAGTGTGAGA----------------GTG------------CCTTA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATACSizeHit CountTotal NormTotal
No Reads
droEle1
GAGAA------------GAAG---------------------------------------AA----------------------------TCG----AAAG-CGAGAAG---AAGCA---A-----A---AACAAACTGC---GGTTGGTATTC--AAC--------ATTC----------------------------------------------------------AAACACA------TT------------------------TTTAAGTC-T--AAACTAAAGTTAAGCACAC--------AGGTGT------------------------GAAT--------------G--------TGTGTGTGTG------------------------------------------------TACCTGTGC-C-CGTGTGAGTGTCA--------GTG-----------------------------TGTGCCAGTGCGAGTGCCTTA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAACTGACATACSizeHit CountTotal NormTotal
No Reads
droRho1
CAGAA---GAA------GAAG---------------------------------------AA----------------------------TCGA---AAAG-CAAGAAG---AAGCA---A-----A---AACAAACTGC---GGTTGGTATTC--AAC--------ATTT----------------------------------------------------------AAACACA------TT------------------------TTTAAGTC-T-AAAACTAAAGTTAAGCACAC--------AGGTGT------------------------ACAT--------------G--------TGTGTA----------------------------------------------------TACCTGTGG-C-CGTGTGAGTGTCG--------GTG-----------------------------TGTGCCAGTGCGAGTGCCTTA-----------GTGTGAGTGACCAGAGGTTG---ACAGTCAACGGCTTTTCTAAACTGACATACSizeHit CountTotal NormTotal
No Reads
droFic1
AAGAA------------GAAG---------------------------------------AA----------------------------TCGA---AAAG-CAAGAAG---AGGCG--AA-----A---AACAAACTGC---GGTTGGTATTC--AAC--------ATTC----------------------------------------------------------AAACACA----CATT------------------------TTTAAGTC--AAAAACTAAAGTTAAGCGCACCTGAGT------CT------------------------GCGT----GCAGAT----G--------TGTTAGAGTGTGTG------TGTGT--------GTT----TT--G-------------TACCCGTGC-C-AGTGTGAGTGT------GACGGTG-----------------------------TGTGCCAGTGCAAGTGGCTTA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATACSizeHit CountTotal NormTotal
No Reads
droKik1
AAGAA---GAA---GAAGCAG---------------------------------------CAGCAGAAG-------------AAGCGG--------------C-GGCAA---CAACA---A-----AAACAAGAAACTGC---GGTTGGTATTT--AACCATTTTTCATTT----------------------------------------------------------AAAGTCA------TTT------------------TC--T-----------TCTACTTAACTTAAGCGCACCTGACTGCAGGTGT------------------------GTGT--------------------------GTGTGTTTGCCCA--GCAGTGA----------------TGCG---------------T-------G-AGTGTGAGTGCTG--------------CGAGTGTG------------------TGTG--------------TTA-----------GTGTGAGTGGACAGAGGTGGACGACAGTCAACGGCTTTTCTAAATTGACATACSizeHit CountTotal NormTotal
No Reads
droAna3
CCCAG-AGGAAGCA---GCAG---------------------------------------AT---CAGCGAGCAGCCTGCAGGA----------------T-CCCCCAG---AATCG---A-----AAGCAGCGAACTGC---GGTTGGTATTT--GA--------------------------------------------------------------------------------------------------------------------------------AGCTGAAGCGCACCTGAGTGCATATGC------------------------TCCGGT--------GCAAG--------AGAGTGAGTGAGCGAG--TCAGCA----------------------G-------------CTTGTGAGCGAGCGAGCGTCTCG--------GTG-TGTGAGTGCGAGAG--------------AG-----------------TG-----------GAGTGACCGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAACTGACATACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................ATCG---A-----AAGCAGCGAACTGC---.............................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002020000
.......................................................................GCAGCCTGCAGGA----------------T-CCCCCAG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
.................................................................CAGCGAGCAGCCTGCAGGA----------------T-CCCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000002
..........AGCA---GCAG---------------------------------------AT---CAGCGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002020000
..................................................................................................................................................................................................................................................................................................................................................................................AGTGAGCGAG--TCAGCA----------------------G-------------CTTG................................................................................................................................................2111.001000001
..........AGCA---GCAG---------------------------------------AT---CAGCGAGCAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
............................................................................................................G---AATCG---A-----AAGCAGCGAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..................................................................................GA----------------T-CCCCCAG---AATCG---A-----AAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
.............A---GCAG---------------------------------------AT---CAGCGAGCAGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...................................................................GCGAGCAGCCTGCAGGA----------------T-CCCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............................................................................GCAGGA----------------T-CCCCCAG---AATCG---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..........AGCA---GCAG---------------------------------------AT---CAGCGAGCAGCCTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.............................................................T---CAGCGAGCAGCCTGCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................................AGCCTGCAGGA----------------T-CCCCCAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............CA---GCAG---------------------------------------AT---CAGCGAGCAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.......GGAAGCA---GCAG---------------------------------------AT---CAGCGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.............A---GCAG---------------------------------------AT---CAGCGAGCAGCCTGCAGGA----------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..................................................................AGCGAGCAGCCTGCAGGA----------------T-CCCCCAG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................G---------------------------------------AT---CAGCGAGCAGCCTGCAGGA----------------T-CCCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...................................................................................A----------------T-CCCCCAG---AATCG---A-----AAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..........................................................................GCCTGCAGGA----------------T-CCCCCAG---AATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
......................................................................................................................................................ATTT--GA--------------------------------------------------------------------------------------------------------------------------------AGCTGAAGCGCACCT...............................................................................................................................................................................................................................................................................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................GGT--------GCAAG--------AGAGTGAGTGAGC...................................................................................................................................................................................................2111.001000010
.............................................................T---CAGCGAGCAGCCTGCAGGA----------------T-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...................AG---------------------------------------AT---CAGCGAGCAGCCTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................CAGCGAGCAGCCTGCAGGA----------------T-CC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................G---------------------------------------AT---CAGCGAGCAGCCTGCAGGA----------------T-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................GAGCAGCCTGCAGGA----------------T-CCCCCAG---AATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...................AG---------------------------------------AT---CAGCGAGCAGCCTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................................AGCCTGCAGGA----------------T-CCCCCAG---AAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..................................................................AGCGAGCAGCCTGCAGGA----------------T-CCCCCAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.............A---GCAG---------------------------------------AT---CAGCGAGCAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.......................................................................GCAGCCTGCAGGA----------------T-CCCCCAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....................................................................GAGCAGCCTGCAGGA----------------T-CCCCCAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-TGTGAGTGCGAGAG--------------AG-----------------T.................................................................1911.001000010
.................GCAG---------------------------------------AT---CAGCGAGCAGCCTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
........GAAGCA---GCAG---------------------------------------AT---CAGCGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..........AGCA---GCAG---------------------------------------AT---CAGCGAGCAGCCTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
droBip1
CTGAC---CCC---AGAGGAG---------------------------------------CAGCCTAA------------AGGATCTT--------------C-CCCAA---AATCG---A-----AAGCAACAAACTGC---GGTTGGTATTC--CA--------------------------------------------------------------------------------------------------------------------------------GGCCCAAGCGCACCTGAGTGCATGTGC------------------------TCTC------ATATGCGAGAGAGTGACTGAGCGAGTGAGTGAG--TCTGTTT--------GTC--------------------------------------------TCG--------GTG-TGTGAGTGCGAGAG--------------CGTG--------------CGA-----------GTGTGAGTGACCAGAGGTGG---ACAGTCAACGGCTTTTCTAAATTGACATACSizeHit CountTotal NormTotal
No Reads
dp5
GAA---------------------------------------------------------------------------------------------------------------GAA---A-----A---CAGAAACTGC---GGTTCGTATTTTATTT--------ATTC----------------------------------------------------------TAAAA----------------------------------TTCAAATT-CAAAACTTAAATCTGGTCACACTTGCGCCCA---------GTATGCAAAAGGCGGCGTCTCT----CTCTCCCT------------------------------------------------------------------------------------CTCTTGGTGTGT--------G-------TG----------TGTGTGTGTGTG--------------------------------------------TGTGGTGG---ACAGTCGACGACTTTTCTAAATTGACATACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GAGTG---TGTGTA---GGTG---------------------------------------TA----------------------------TTCTGCACATG-TGGATTG---AAGAA---A-----A---CAGAAACTGC---GGTTCGTATTTT---T--------ATTC----------------------------------------------------------TAAAA----------------------------------TTCAAATT-CAAAACTTAAATCTGCTCACACTTGCGCCCA---------GTATGCAAAAGGCGGCGTCTCT----CTCTCCCT---------------------------------------------------------------------------------C-TCTTTGCGTGTGT--------G-----------------TGTGTGTGTGTGTG--------------------------------------------TGTGGTGG---ACAGTCGACGACTTTTCTAAATTGACATACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................CATG-TGGATTG---AAGAA---A-----A---CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.007601000
.................................................................................................CATG-TGGATTG---AAGAA---A-----A---CAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
..................................................................................................ATG-TGGATTG---AAGAA---A-----A---CAGAAACTGC---GT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2912.002200000
.................................................................................................CATG-TGGATTG---AAGAA---A-----A---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
..............................................................................................GCACATG-TGGATTG---AAGAA---A-----A---CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
....................G---------------------------------------TA----------------------------TTCTGCACATG-TGGATTG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
....................G---------------------------------------TA----------------------------TTCTGCACATG-TGGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
....G---TGTGTA---GGTG---------------------------------------TA----------------------------TTCTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACGACTTTTCTAAATTGAC....2411.001100000
..................GTG---------------------------------------TA----------------------------TTCTGCACATG-TGGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.................................................................................................CATG-TGGATTG---AAGAA---A-----A---CAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
............................................................................................................G---AAGAA---A-----A---CAGAAACTGC---GT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
GAGTG---TGTGTA---GGTG---------------------------------------TA----------------------------TTCTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
........................................................................................................................A-----A---CAGAAACTGC---GGTTCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
.................................................................................................CATG-TGGATTG---AAGAA---A-----A---CAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
............................................................................................................G---AAGAA---A-----A---CAGAAACTGC---GG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGG---ACAGTCGACGACT.................2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT--------G-----------------TGTGTGTGTGTGTG--------------------------------------------TG.......................................23200.102000200
droWil2
CAAAC---GGA---A--AAAG---------------------------------------TA----------------------------TCAA---AAGTGCAATAAT---AAACACAAA-----T---TAAAAACTGC---GGTTGGTATTA---AC--------ATGAGAAATAATAATGA-TAAAAAAAGAAAAATGCAAAACTACAAT--------------TCAATCTAA------TGT------------------AA--TGATTAGTG-----------------GCATACCCATGGACATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTA-----------GTTATAGTTGCAGATAGTGG---ACAGTCAACGGCATTTCTAAATTGACATACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................CCATGGACATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTA-----------GT...................................................2011.00100100
............................................................................................AA---AAGTGCAATAAT---AAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...........................................................................................CAA---AAGTGCAATAAT---AAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGATAGTGG---ACAGTCAACGGC..................2411.00100010
.......................................................................................................AATAAT---AAACACAAA-----T---TAAAAACTGC---GT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
......................................................................................................................................AACTGC---GGTTGGTATTA---AC--------ATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.................................................................................................................AACACAAA-----T---TAAAAACTGC---GT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
droVir3
AAAAA---CAA---CAACAACAACAACAACTACTACTACAACAAAAATAATAACAATAACAA----------------------------TTAC---GACA-ACAGCAG------CA---G-----C---AACAAATTGCTTGGGTTGGTATAAAAAAA--------ATAT----------------------------------------------------------ATATATA------T--------------------GT--ATTGAATTT-AACAAATTAAA--------CACATGCATAGAAATGGCCCATT----------GTGTGTGTGT----GAGTGCCT-------------------------------------------------------------------------G----------CTGTGTGTGTGT--------G-----------------TGTGTGTTTGTGTG--------------------------------------------TGCGTTGT---CCAGTCAACGGCTTTTCTAAATTGACATACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................GAAATGGCCCATT----------GTGTGTGTGT----.....................................................................................................................................................................................................................................2311.001000000000000000000000000000000000010000000000000000000000000000
.......................................................ATAACAA----------------------------TTAC---GACA-ACAGCAG------CA---G-----T---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
...................................................................................................CA-ACAGCAG------CA---G-----C---AACAAATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
..................................................TAACAATAACAA----------------------------TTAC---GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000010000000000000000000000000000000000000000
.......................................................ATAACAA----------------------------TTAC---GACA-ACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................ACA-ACAGCAG------CA---G-----C---AACAAATTGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................A-ACAGCAG------CA---G-----C---AACAAATTGCTTGGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
.........................................................AACAA----------------------------TTAC---GACA-ACAGCAG------CA---G-----C---A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000100000000000000000000000000000000000
...................................................................................................CA-ACAGCAG------CA---G-----C---AACAAATTGCTTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................TAC---GACA-ACAGCAG------CA---G-----T---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.251000000000000000000000001000000000000000000000000000000000000000
..................AACAACAACAACTACTACTACAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.171000000000000000000000010000000000000000000000000000000000000000
..................AACAACAACAACTACTACTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------G-----------------TGTGTGTTTGTGTG--------------------------------------------TGCG.....................................22200.051000000000000000000001000000000000000000000000000000000000000000
droMoj3
AACAA---TTA---AAAGAAC---------------------------------------TACAAGAAA---------------------CAGA---ACAA-CAAGAAG---AA-CA---A-----C---AACAAATTGCTTGGGTTGGTATTA--CAA--------ATAT-----------ATTGGCT----T-------------------ATATATATATAAAT--ATATATA------T--------------------GT--A----------------T------------------ATAGAGATGTGCAATG----------T------------------------------------TGT--ATGTGCCCA--AGTCTCATATGTGAA--C----ATGCA-------------GGC-------C-TGCATGTGTGTGT--------G-----------------TGTGTGTGTGTGTG--------------------------------------------TGCGTTGT---CCAGTCAACGGCTTTTCTAAATTGACATACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................AGAAA---------------------CAGA---ACAA-CAAGAAG---AA-CA---A-----C---A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.............................................................ACAAGAAA---------------------CAGA---ACAA-CAAGAAG---AA-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.................GAAC---------------------------------------TACAAGAAA---------------------CAGA---ACAA-CAAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...................................................................AA---------------------CAGA---ACAA-CAAGAAG---AA-CA---A-----C---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
....................................................................A---------------------CAGA---ACAA-CAAGAAG---AA-CA---A-----C---AACAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT--------G-----------------TGTGTGTGTGTGTG--------------------------------------------TGCG.....................................25200.051000100
droGri2
GCAAA---CGA---GGGCAAG---------------------------------------CG----------------------------CCCA---AAGG-TATGCAATGCAAATGCAAATGCGAATGCTGCCAGCTGC---TCCTG---TTGT---------------------------GCTTGACACACTCAAAACGCCA------------------------------------------------------------------------------------------GACATTT--------GTGT------------------------GTGTGT--------GTGTG--------TGTGTGTGTGTGTGAACACTTGCTT--------TTA----TTGAG-------------TGG-------C-TGTCCCAGTGTGT--------G-------TGTG------TGTG----------TG------------------T-----------GTGTGTGTGTGTCGCAGCAG---GCACTCGCCAGCTT----------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
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Generated: 05/18/2015 at 02:27 PM