ID:

dsi_10699

 Coordinate:

3l:7710328-7710477 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7710112_7710327_+]; CDS [3l_7710112_7710327_+]; intron [3l_7710328_7713331_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGTCATATTGCAGAATCAGGTGGATACATTGCATTGGCAATTGAAACAGGTGAGTGAATGAGCCGGCGAAAGGCACAGCAAGAAATCCGCAACGAAACAAAAGACTCAAGACACAAACGTGACTTGTGATTTCTGTTCTCGACTGGAGGAAACTGTGTTAAGTGCCAAGTCAACCCAACAACCCCACAACAAACCCCATCTCGATCTCGATCTGCTTTGGCTGAAAACTTCTGTTGCCCTCCTTGGATC
**************************************************.........(((...((((...(((((((.......((((...(((((((.(((...((((.(((....))).))))...))).)))).)))..)))).....)))))))...))))...)))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
........................................................................................................................................TTCTCGACTGAAGGAAACTGT............................................................................................. 21 1 1 1.00 1 0 1 0
.....................TGGATACATTGCATTGGCAATTGAA............................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0
.................................................................................................................................................................................................ACCCCATCTCGAACTCGG....................................... 18 2 7 0.14 1 1 0 0
..................................................................................................................................................GAGGAACCTGTATTAA........................................................................................ 16 2 20 0.05 1 0 1 0
....................................................................................................................................................................................................CCATCTCGAACTCGGTC..................................... 17 2 20 0.05 1 0 0 1
...TCAGATTGCAGAATC........................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 1

Anti-sense strand reads

GACAGTATAACGTCTTAGTCCACCTATGTAACGTAACCGTTAACTTTGTCCACTCACTTACTCGGCCGCTTTCCGTGTCGTTCTTTAGGCGTTGCTTTGTTTTCTGAGTTCTGTGTTTGCACTGAACACTAAAGACAAGAGCTGACCTCCTTTGACACAATTCACGGTTCAGTTGGGTTGTTGGGGTGTTGTTTGGGGTAGAGCTAGAGCTAGACGAAACCGACTTTTGAAGACAACGGGAGGAACCTAG
**************************************************.........(((...((((...(((((((.......((((...(((((((.(((...((((.(((....))).))))...))).)))).)))..)))).....)))))))...))))...)))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
..........................................................................................................................TGACCTCTAAAGACAAGAG............................................................................................................. 19 2 1 3.00 3 2 1 0 0 0 0 0 0 0 0
...........................................................................TGTCGTTTTTTACGCGTTGCTGT........................................................................................................................................................ 23 3 3 0.67 2 0 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................................TGGTGGGGCGTTGTTTGGGG.................................................... 20 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................AGACGAGATCTGACCTCC.................................................................................................... 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................TTTGAGGCAGAGCTAGAGC........................................ 19 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................TGACCTCTAAAGACAAGA.............................................................................................................. 18 2 10 0.20 2 0 1 0 0 0 0 0 1 0 0
..........................................................................................................................TGAACTCTAAAGACAAG............................................................................................................... 17 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................ATGATCTCTAAAGACAAGA.............................................................................................................. 19 3 20 0.10 2 0 0 0 0 0 2 0 0 0 0
.........................................................................................................GAATTCTGTGTATGCAATG.............................................................................................................................. 19 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................GGTGTTGTATGGGGT................................................... 15 1 14 0.07 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................ACTTGGGGTGTTGGGGTG.............................................................. 18 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................CTAAAGACAAGAGCA........................................................................................................... 15 1 16 0.06 1 0 0 0 0 0 1 0 0 0 0
........AAGGTCTTAGTCCGTCTAT............................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................TCGGAGTTCTGTGTT..................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Generated: 04/24/2015 at 10:27 AM