ID:

dsi_10691

 Coordinate:

3l:16321850-16321999 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.0 -41.8 -41.7

Flybase annnotation

CDS [3l_16322000_16322488_+]; exon [3l_16322000_16322659_+]; intron [3l_16321350_16321999_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGGTGGTGTAATTAACTTGGTGGAGTGCTTGGGGTAACTCGAGGGTTGACTTATCCCCACTTAGAGTTTGAATTATGGTTTGCCGAGTAAACTAGTTAGCCAGGAATCAGAAAAGAGGGTGACTTTCGCCCAGGTGTCGCACAGGTGAATGAACCCTATTGACAGCGGGGTTGTACCCCATCTTCTCTCTGTTCCTGCAGGTCTATCCCAAGGGAATGTACAATCTGTTGATGTGGATACACCGGGAGTA
**************************************************.........................((((((((...))))))))......((((((.((((.((((((((((...))))))...(((((....(((......)))....)))))..(((((...))))).))))...))))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.............................................................................................................................................................................TACCCCATCTTCTCTCTGTTCCTG..................................................... 24 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................TATTGACGGCGGGGTT.............................................................................. 16 1 4 0.25 1 0 1 0 0 0
.......GTAATTAACTTGGAGGAC................................................................................................................................................................................................................................. 18 2 9 0.22 2 0 0 2 0 0
......................................................................................................................................................................................................................................ACGTCGATACGCCGGGAGT. 19 3 6 0.17 1 0 1 0 0 0
...........................................................................................................................................................................................................................AAAATCTGTTTATGTGGAT............ 19 2 8 0.13 1 0 0 0 1 0
..................................................................................................................................CAGGAGTCGCACAGG......................................................................................................... 15 1 8 0.13 1 0 0 0 0 1
.......................................................................................................................................................................................................AGTCTGTCCCAAGGGTAT................................. 18 3 20 0.05 1 0 1 0 0 0
....................................................ATCCCCGCCTAGAGTT...................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0
............................................................................................................................................................TATCGACGGCGGGGTT.............................................................................. 16 2 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TCCACCACATTAATTGAACCACCTCACGAACCCCATTGAGCTCCCAACTGAATAGGGGTGAATCTCAAACTTAATACCAAACGGCTCATTTGATCAATCGGTCCTTAGTCTTTTCTCCCACTGAAAGCGGGTCCACAGCGTGTCCACTTACTTGGGATAACTGTCGCCCCAACATGGGGTAGAAGAGAGACAAGGACGTCCAGATAGGGTTCCCTTACATGTTAGACAACTACACCTATGTGGCCCTCAT
**************************************************.........................((((((((...))))))))......((((((.((((.((((((((((...))))))...(((((....(((......)))....)))))..(((((...))))).))))...))))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
.....................................................AGGGGCGAATCTCAA...................................................................................................................................................................................... 15 1 4 1.50 6 6 0 0 0
....................................................TAGGGGCGAATCTCAA...................................................................................................................................................................................... 16 1 3 1.33 4 4 0 0 0
..................................................ACTAGGTGTGAATCTCAAA..................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0
..................................................ACTAGGTGTGAATCTCAA...................................................................................................................................................................................... 18 2 5 0.80 4 4 0 0 0
......................................................GGGGCGAATCTCAAA..................................................................................................................................................................................... 15 1 5 0.40 2 2 0 0 0
...................................................GTAGGGGCGAATCTCAA...................................................................................................................................................................................... 17 2 5 0.40 2 2 0 0 0
..................................................AATAGTGGCGAATCTCAA...................................................................................................................................................................................... 18 2 5 0.40 2 2 0 0 0
..................................................................................................................................GTCCACATCGTCTCAACTTAC................................................................................................... 21 3 3 0.33 1 0 1 0 0
.....................................................................................TCATTTGATGAATCGGT.................................................................................................................................................... 17 1 4 0.25 1 1 0 0 0
....................................................TAGGTGCGAATCTCAAA..................................................................................................................................................................................... 17 2 17 0.24 4 4 0 0 0
................................................CGATTAGGGGCGAATCTCAA...................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0
...................................................ACAGGGGCGAATCTCAA...................................................................................................................................................................................... 17 2 7 0.14 1 1 0 0 0
....................................................TCGGGGCGAATCTCAAA..................................................................................................................................................................................... 17 2 9 0.11 1 1 0 0 0
.................................................ATATAGGGGCGAATCTCAA...................................................................................................................................................................................... 19 3 19 0.11 2 2 0 0 0
...........................................................................................................................................................................................AGACAAGGACGCCCA................................................ 15 1 10 0.10 1 0 0 1 0
....................................................TCGGGGCGAATCTCAA...................................................................................................................................................................................... 16 2 20 0.10 2 2 0 0 0
....................................................TTGGGGCGAATCTCAAA..................................................................................................................................................................................... 17 2 10 0.10 1 1 0 0 0
...................................................ATGGTGGTGAATCTCAA...................................................................................................................................................................................... 17 2 11 0.09 1 1 0 0 0
..................................................ACTAGGTGCGAATCTCAAA..................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0
..............................................ACTGAGTAGGGGTGGA............................................................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0
.....................................................TGGGGCGAATCTCAAA..................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0
...........................................................................................................................................................................AGATGGGCTAGTAGAGAG............................................................. 18 3 20 0.05 1 0 0 0 1
....................................................CAGGGGCGAATCTCAA...................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0
..................................................ATGAGGGGCGAATCTCAA...................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0

Generated: 04/24/2015 at 04:11 AM