ID:

dsi_10674

 Coordinate:

3r:12656987-12657278 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.7 -9.6

Flybase annnotation

exon [3r_12657279_12657535_-]; CDS [3r_12657279_12657535_-]; CDS [3r_12656717_12656986_-]; exon [3r_12656638_12656986_-]; intron [3r_12656987_12657278_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAATATCCTGGAAACAGGAGCGACGCCTGCCAAGAGTATCTACTATAATGTAAGTACAAATTTCCCATTTAAAATCTAATTTTGATCTGTAGAATCTAATCCAATAAGCGTGTAGTTCGTACCTCCGATAGTGAGTTGTACAAATTCTAGCGAATCATCTCCTCAATTAAAAACTATCTGTAAAAATAGCTAAATGTTGTCGCATCATCGCGGTGATAAGAACGGATGATCTTGTTTGTGAACCCCACATAACACATCATAATCATCACTCGCCTTATCAGCTACACATCTTTCGATTCAATTAATCCAATAATCCAATGATGACTTGCACCTAATTGCAGACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTACTGCGGCAA
*******************************************************************************************************************************************************************************************************************************..((((((..((..((((............)))).))..))))))...........................................********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M024
male body		 SRR1275487
Male larvae		 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................................................................................................................CGGATGATCTTGTTTGTGAACCC.................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGGATGATCTTGTTTGTGAAC.................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACGGAAGATCTTGGTTGGGAA..................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................................TCGATTCAATTAATCCAA................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TCCAATGATGAGTTGCA............................................................. 17 1 3 1.00 3 0 0 3 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................GGCGGACATCAAGACATCCGTG................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................................................ACGAGTCACACGGCGGAC................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............AAAAGGAGCGACGCCTGCC........................................................................................................................................................................................................................................................................................................................................................................ 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..AATATCCTGGAAACAGGAGCGACGCCT........................................................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........CTGGAAACAGGAGCGACGCCT........................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................CACACGGCGGACATCAAGAC........................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................................................................ACACGGCGGACATCAAGACATCCGT.................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................CGGACATCAAGACATCCGTGC................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................GATCTGTAGAATCTAATCCAATAAGC.......................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...ATATCCTGGAAACAGGAGCGACGCC............................................................................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TCCAATGATGAGTTGCACT........................................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................ACACGGCGGACATCA............................ 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................AAAAATTATCTGTAAAAA............................................................................................................................................................................................................. 18 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0
....TATCCTGGAGACCGGCGCG................................................................................................................................................................................................................................................................................................................................................................................. 19 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0
....................................................................................GATCTGTAGAGTTTGATC.................................................................................................................................................................................................................................................................................................. 18 3 20 0.15 3 0 0 0 0 2 0 0 0 0 1
.................................................................................................................................................................................................................................GACGATCTTGTTTGGGAA..................................................................................................................................................... 18 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCAACATCGCGGTGA............................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................CCTTCGATAGAGGGTTGTA........................................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GACACACGGCGGACA............................... 15 1 13 0.08 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................TACGACGGACATGAAGAC........................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................ACCGTATAGATCGTACCT........................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................................................................................................................................................TAATACGAGTCACACGGC.................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTTATAGGACCTTTGTCCTCGCTGCGGACGGTTCTCATAGATGATATTACATTCATGTTTAAAGGGTAAATTTTAGATTAAAACTAGACATCTTAGATTAGGTTATTCGCACATCAAGCATGGAGGCTATCACTCAACATGTTTAAGATCGCTTAGTAGAGGAGTTAATTTTTGATAGACATTTTTATCGATTTACAACAGCGTAGTAGCGCCACTATTCTTGCCTACTAGAACAAACACTTGGGGTGTATTGTGTAGTATTAGTAGTGAGCGGAATAGTCGATGTGTAGAAAGCTAAGTTAATTAGGTTATTAGGTTACTACTGAACGTGGATTAACGTCTGCTCAGTGTGCCGCCTGTAGTTCTGTAGGCACGAGAAGATGACGCCGTT
*********************************************************************************..((((((..((..((((............)))).))..))))))...........................................******************************************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
..................................................................................................................................................................................................................................................................GTAATAGTAGTGAGTGGCATAGT............................................................................................................... 23 3 1 2.00 2 0 2 0 0 0 0 0 0 0
........................GCGGACGGTTCTCATAGATGA........................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................GATTTGGTTATTCGCACA...................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............................ACGGTTCTCATAGATGATATT....................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................TGCGGACGGTGCTCATAGATG............................................................................................................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CCTATACTTGGCTACTAGA............................................................................................................................................................... 19 3 9 0.89 8 4 2 1 0 1 0 0 0 0
.....................................................................................................................................................TATCTTAGTAGAGTAGTTAATT............................................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................ATAGTCGATGTGTAGAA................................................................................................... 17 0 3 0.33 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................AGTCGATGTGTAGAA................................................................................................... 15 0 3 0.33 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GCGAAATAGTCGATGTCTA...................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GTAGTCGATGTGTAGAGACC................................................................................................ 20 3 4 0.25 1 0 0 0 0 1 0 0 0 0
....................................................................................................AGGGTATTCGCACCTCAAACA............................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................GAATTGTGTTGAATTAGTAGT........................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................CGAAATAGTCGATGTCTA...................................................................................................... 18 2 10 0.20 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................ACTACTGAACGCGAAT......................................................... 16 2 20 0.15 3 0 2 0 0 1 0 0 0 0
..................................................................................................................TTAGGCATGGAGGCTAT..................................................................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 1 0 0 0 0
....................................................................................................................AAGCGTGGAGGCTAT..................................................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................AGCTTAGTAGCGCCA................................................................................................................................................................................. 15 1 7 0.14 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................GGGAGGATATCACTCAGCA............................................................................................................................................................................................................................................................ 19 3 10 0.10 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................CTGTTCTCGCCTGCTAGAA.............................................................................................................................................................. 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................................AGGTCATTAAGTAACTACTG.................................................................. 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................AAGTTAGTTAGGTTCTTA............................................................................. 18 2 13 0.08 1 0 0 0 0 0 0 0 0 1
..................................................................................................................................TCCGTCAACCTGTTTAAGAT.................................................................................................................................................................................................................................................. 20 3 14 0.07 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GTAGTCGATGTGTAG..................................................................................................... 15 1 19 0.05 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................................................................................................................TCAGTGTGCGGCCTAT............................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTGATCGGACTAGTCG............................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0
..........................GGACGGTTTTCATAG............................................................................................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................TAAGATCTCTAAGTAG........................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:12656937-12657328 - dsi_10674 ACAATATCCTGGAAACAGGAGCGACGCCTGCCAAGAGTATCTACTATAATGTAAGTA-CAAATTT---------------------------CCCATTTA------------------------------------------------------------------------------------------------------------------------------------AAATCTAATTTT-GATCTGTAGAATCTAATCCAATAAGCGTGTAGTTCGTACCTCCGAT------------------------------------------------AGTGAGTTGTACAAATTCTAGCG--AATCAT-------CTC------C---TCAATTAAAAACTATC----------------T--GTAAA-AATAG---CTAAATGTTGTCGCATCATCG----------CGGTGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTGTGAACCCCA---CA-------------------------------------------------------------T-----------AACACATCATAATCATCACTCGCCTTATCAGCTACACATCT--------------------TTC---GATTCAATTAATCCAA--TAATCCAAT----------GATGACTTGCAC------------------------------------------------------------------CTAATTGCAGACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTACTGCGGCAA
droSec2 scaffold_0:13483444-13483838 - ACAATATCCTGGAAACAGGAGCGACGCCTGCCAAGAGTATCTACTATAATGTAAGTA-CAAATTT---------------------------CCCATTTA------------------------------------------------------------------------------------------------------------------------------------AAATCTAATTCC-GGTGTGTAGAATCTAATCCAATAAGCGTGTAGTTCGTACCTCCTAT------------------------------------------------AGTGAGTTGTAGAAATTCTAGCT--AATCAT-------CTC------C---TCAATTAAAAACTATC----------------T--GTGAA-AATAG---GTAAATGTTGTCGCATCATCG----------CGGTGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTGTGAATCCCACCACA-------------------------------------------------------------T-----------AACACATCATAATCATCACTCGCCTTATCAGTAACACATCT--------------------TTC---GATTCAATTAATCCAA--TAATCCAAT----------GATGACTTGCAC------------------------------------------------------------------CTAATTGCAGACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTACTGCGGCAA
dm3 chr3R:8501116-8501507 + ACAATATCCTGGAAACGGGAGCTACGCCTGCCAAGAGCATCTACTATAATGTAAGTA-CCAATTT---------------------------CCCATTTA------------------------------------------------------------------------------------------------------------------------------------AAATCTAATGCC-GATCTGTAGAATCTAATCCAATTAGCGTGTAGTTCATACCTCCTAT------------------------------------------------AGTGAGTTGTACAAATTCTAGCG--AATCAT-------CTC------C---TCAATTAAAAACTATC----------------T--GTGAA-AATAG---CTTAATATTGTCGCATCATCG----------CGGTGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTGTGAACCCCA---CA-------------------------------------------------------------T-----------AACACATCATAATCATCAATCGCCTTATCAGTTACACATCT--------------------TTC---GATTCAATTAATCCAA--TAATCCAAT----------GATGACTTGCTT------------------------------------------------------------------CTAATTGCAGACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTACTGCGGTAA
droEre2 scaffold_4770:13149925-13150339 - ACAATATCCTGGAAACTGGAGCAACGCCTGCCAAGAGTATCTACTACAATGTAAGTT-CTACTTT---------------------------TCTATTTA-------------------------------------------------------------------T------------GAGCTGGACTAT---------------------------------CATTT-AAGAACTTAACT--AATGT---------GAACCAATAAGTGTGTAGTTCATACCTCCTAT------------------------------------------------AGTCGGTTGTACAAATTCTACCA--AATCAT-------CTT------C---TCAATTAAAAATTATTTGAATGCCACATTCT----GTCAA-AATAG---CCCAATATTGTCGCATCATCG----------TGGCGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTGTGAACCCTA---AA-------------------------------------------------------------T-----------AACACATCATAATCATCACTCGCCTTATCAGTTACACATCT--------------------TTC---GAGTCAATTAATCCAA--TAATCCAAT----------GATGACTTGCGA------------------------------------------------------------------CTAATTGCAGACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTACTGCGGCAA
droYak3 3R:12788253-12788634 + ACAATATCCTGGAAACAGGAGCGACGCCTGCCAAGAGCATCTACTATAATGTAAGTA-CTACTCT---------------------------T-CATATA------------------------------------------------------------------------------------------------------------------------------------AAAACTAATCTC-AATCT---------GATCCAATACGCGTGTAGTTCATGCCG-------------------------------------------------------------ATACACTTTCTACCG--AATCAT-------CTC------C---TCAATTAAAAACTATT-AAATTCCACACTCG----GTCAA-AATAG---CCCAATATTGTCGCATCATCG----------TGGCGATAAGA------------GCGGATGATCTTGT--------------------------------------------------------------------------TTGTGAACCCCA---CA-------------------------------------------------------------T-----------AACACATCATAATCATCACCCGCCTTATCAGTTGCACATCT--------------------TCC---GATTCAATTAATCCAA--TAATCCAAT----------GATGACTTGCGA------------------------------------------------------------------CTAATTACAGACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTACTGCGGCAA
droEug1 scf7180000409804:694075-694514 + ACAACATCCTCGAAACAGGATCCACGCCAGCCAAGAGTATTTACTATAATGTAAGTA-TAC--------TACCATAGAA---------TCCC--C-AAGAAAATCTCATCCCTATCATTCTCGTCCTTCATTGTATTCATCA----------------------------------------------------------------------A-----------ATAT------------TCTC-AATCTGTAAAATCTAATCATCAAATTTTGCAATTCTTAACTCTTGAAAAAAATTTAATATGTGTCAA----------------------------ATG---TGTAGCAATTCTGCCA--CATCAT-------CTT------G---TCAAT--------------------------------AAA-AATAG---CCAAATATTGTCGCATCATCG-------TCTTATTGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTGTGACCCCAG----ATCGGACGTATGT-----------------------------ATCACCCACTCGACTCATT---------------CACAT---------------------CA--TACACAGTT--------------------TTC---GAATCAATTAATCCTA----------T----------GATGACTTGCTA------------------------------------------------------------------TTAATTGCAGACGAGTCACACGGCGGACATCAAGACGTCCGTGCTCTTTTACTGCGGCAA
droBia1 scf7180000302402:187955-188411 + ACAACATCCTGGAAACGGGATCCACGCCTGCCAAGAGTATTTACTACAATGTAAGTG-TCTCACTATCCT-----A---GCTGTTACACTCC--C--------TCCCATGACCCATATTTAGGATT---A---GG-------------------------------A------------------------------AATTA----------A-----------AAATTCA--------GAACATAATCTGAACAATCTTATCAACTCAC------------AT----T-----AAGTTTA--ATGTGTCGG----------------------------ATGAGTTGTAG-GATTTTGCCA--CATCAT-------C-C------G---TCAATTAAAAACTATT-TAAAAACACATTCC-A--TTCAA-AACAG---CCAGAAGTTGTCTCATCATCC----------CGGTGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTGTGAACCCAG----ATCAGA----TGT-----------------------------ATCGCCCACTCG--------------------AAAACATCATCATCACCATTCGCCTTATCGGTTACACAGCT--------------------ATC---GATTCAATTAACCCAG----------T----------GATGACTTGCGA------------------------------------------------------------------CTAATTGCAGACGAGTCACACGGCGGACATCAAGACGTCCGTGCTCTTCTACTGCGGCAA
droTak1 scf7180000415366:41061-41495 - ACAATATCCTGGAAACGGGAGCCACACCTGCCAAGAGCATTTACTACAATGTAAGTA-TCC--------TGTTATAATA---------CTTC--C--------TCTTATGACTAATTTTTTGGATTTTTG---GA-------------TTATTAAG--------AATT------------GAATTT-----------------------------------GAATTCTAT-GAAA-------TC-AATCTGAAAAATCTAATCATTTATGCCTGTCATTCATTC----TA-----AATATTATATGTGTCAG----------------------------A-------TCATAATTTTGCCG--CATCAT-------CTC------G---TTAATTAAAAACTATT-ATAA------------------------G---CCAAATGTTGTCGCATCATCG----------TAGAGATAAGC------------GCAAATGATCGTGT--------------------------------------------------------------------------TTTTGAACCCAG----AT------------------------------------------------------------C-----------AGATCATCATCATCATCGTTCGCCTTATCAGTTACACGACT--------------------CTT---GATTCAATTAATCCAA----------T----------GATGACTTGCGA------------------------------------------------------------------CTAATTGCAGACGAGTCACACAGCTGACATCAAGACGTCGGTGCTGTTCTACTGCGGAAA
droEle1 scf7180000490994:190880-191344 + ACAATATCCTGGAGACGGGAGCCACGCCTGCCAAGAGCATTTACTACAATGTAAGTA-TGC--------TGCCATAATAATAATATATCTGTT-------------------------------------------CCATTATCCATTTTATAAAC--------ACAT------------GCGCTT-----------------------------------GACCCCTTT-AAAATC--------TGTCTGTAAAATCTAATCAACTAAGC-TGTAA----TACCTTCTATAAATAATATTTG-------------------------------------ATGAGTTGTAAAAATTCTGCCA--CATCAG-------CTA----GTCTCAATAATTAAAAACTATT-AAATGCCACATTCC-A--TTCAA-AATAG---CTAAATGTTGTCGCATCATCG----------TGGCGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTTTGAACCCAA----ATCAGA----TGT-----------------------------ATCATCCGAG------------------------TACCTCCTAA---TCATTCTCCTTATCAGTTACACCGCT--------------------CTC---GATTCAATTAATCCAA----------T----------GATGACTTGCAC------------------------------------------------------------------CCAATTACAGACGAGTCATACGGCGGACATCAAGACGTCGGTGCTCTTCTACTGCGGCAA
droRho1 scf7180000779900:76033-76546 + ACAACATCCTAGAAACGGGTGCCACGCCTGCCAAGAGCATTTACTATAATGTAAGCC-CGC---T--------ATA---TCTTTTATATTTC--A--------ATCCATGACTCTTTTTT------TTTG---CC-------------TAATTAATCTCATCTAAAGTCAATTACCCTATTAACCAGTCTTACTTTT---ACAA----TCTCAACTATAGTCAACTCTAT-TA--------GAC-TATCTGAAAAGTCAAATCAAATAGGCTGGCAAATCAAACA-TATAAAAATAATCTTAG-------------------------------------ATGAGTAGTAGAAATTATGCCA--CATCAT-------CTC---GTAA---ATAATTAAAAACTATT-ATGTGCCACATTTC-A--TTCAA-AATAA---CCAAAAGTTGTCGCATCATCG----------TAGCGATAAGA------------ACGGATGATCTTGA--------------------------------------------------------------------------TTTTGAACCCAG----A---------TGT-----------------------------ATCACTC---------------------------CACTTCCTCATAATCATTTGCCTTATCAGTTACACGGCT--------------------CCC---GATTCAATTAATCCAA----------T----------CATGACTTGTGC------------------------------------------------------------------CTAATTACAGACGAGTCATACGGCGGACATCAAGACGTCTGTGCTCTTCTACTGCGGCAA
droFic1 scf7180000453812:600195-600631 - ACAACATCCTGGAAACAGGATCCACGCCTGCCAAGAGTATTTACTACAATGTAAGTA-TCC--------T-----A---ATAGTTATTCTCTT-------------------------------------------TCATTA----------------------------------------------------------------------A-----------ACATAC-GAAA-------TC-AATCTGTAAGATCTAATCAGA--CGC----AGTT--------ATATAAATAGAA----ATGT-----ATGTGTAATAG-----------------ACAAGCTTCATAAATTTTGCCA--CCTCAT-------CTC---CAAG---ATAATTGGTAATAATT-AAACGCCACATCCC-A--TTGAA-AATAG---TCAAAAGCTGCAGCATCATCG----------TAGTGATAACA------------ACGGATGATCT-GT--------------------------------------------------------------------------TTTTGACCCCAA----GTCAGA----TGTATCGCCCCATTGAATCACTC-----------------------------T-----------AGCAAC---------TCATCGGCCTTATCAGTTACACCGTT--------------------TTC---GATTCAATTAATCCAA----------T----------GATGACTTGCGA------------------------------------------------------------------CTTATTGCAGACAAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTACTGCGGCAA
droKik1 scf7180000302256:559361-559783 - ACAATATCCTGGAGACGGGAGCCACGCCCGCCAAGAGCATCTACTATAACGTGAGTAACTAATTT---------------------------T--------------------------TT----------------------------------------------------------------------------------------------------------------------------AATTTATAGAATTTAA---A--------------------------------------ATG------ATGTTTA-GAGATACTGAATTTCGTCAG---------CGGAATTGTGCCA--CATCAC-------CTC---GAGA---TTAATTAAAAACTATT-AAATGACACATTCC-AT-TCAAA-AACAA---CCAAATATTGTAGCGTCATCG----------TGGCGATAAGCTGAGCTACTGCTGCTGCTGATCTTGT--------------------------------------------------------------------------TTTTGATCCCAG----AGCAAT----TGC-----------------------------AACGCTCACCCATTT------------------------CCCCATCATTATCAACCTTATCGCTTACGATGCT-TTC----------------TTC---GATTCAATTAATCCAAGCTAATCCAA---CCTCTACGAATGACTTGCGA------------------------------------------------------------------CTAATTACAGACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTATTGCGGCAA
droAna3 scaffold_13340:6674767-6675136 - ACAATATTCTGGAAACTGGAGCCACGCCCGCCAAAAGTATTTACTATAATGTGAGTA-TTGTGCTCCG------------------------------------------------------------------C-------------------------------A------------------------------AATTATAAATAAT-------------------CA--------TCTAC-G-----------------------------------------------------------------------------------------------------------A-TCTGCCA--CATCAT-------CTT---GGTC---TCAATTAAAAACT-TT-AAATGACACTTGCC-A--TTGAA-AAAAG-CACAAAATATTGTCGCATCATGC----------CACTGATAAGA------------GATGCTAATATTGT--------------------------------------------------------------------------TTT-----------------GT----TGC-----------------------------AACGCCAGCTCATCTCATTTTAATTTTAAAAT--TAA---ATCGTCCTCGATTTTCTTATCAGTTACATGACT--------------------TTC---AATTCAATTAATCCCA-----------------ACCGGATGACTTGCGA------------------------------------------------------------------CTAATTGCAGACAAGCCACACCGCCGACATCAAGACGTCCGTGCTCTTCTACTGCGGCAA
droBip1 scf7180000396708:2165009-2165377 + ACAATATCCTGGAAACTGGAGCCACGCCCGCCAAAAGTATTTACTATAATGTGAGTA-TCA--------TCTAATAATA-----------------------------------------------------------------------------------------------------------------------------AATAAT-------------------CA--------TCTA--------------------------------------------------------------------------------------------------TG--------AGA-TTTGCCA--CATCAT-------CTT---GGTG---TTAATTAAAAACTATT-AAATGGCACTTGCC-A--TTGAA-AAAAAACACAAAATATTGTCTCATCATTG---------CCACTGATAAGA------------GATGCTAATATTGT--------------------------------------------------------------------------TTT-----------------GT----TGC-----------------------------AAAGCCAGCTCATCTCATTTTAATTTTAAAAG--TAA---ATCGTCATCGTTTCTCTTATCAGTTACATGACT--------------------TTC---AATTCAATTAATCCCA---------AT--------TGGATGACGTGCGA------------------------------------------------------------------CTAATTGCAGACAAGCCACACGGCCGACATCAAGACCTCCGTGCTCTTCTACTGCGGCAA
dp5 2:5738123-5738523 - ACAACATCTTGGAGACAGGATCCACTCCCGCCAAGAGCATCTACTATAACGTGAGTT-CAAA-------------------------------------------------------------------------------------------------------------------------------------------------AAC-------------------CA--------GCACA-G-----------------------------------------------------------------------------------------------------------A-TCTGCCA--GATCAT-------CAT---AGTG---CCAATTAAAAACTATT-AAATGACACATTCA-T--TTGAA-AACAG---AGAAAAATTGTT-CGTCATCCTCAATAGTTTCATTGATTACG---------ATGTCTGCTGATCTTGTTTTGTGTTATATTACGTG------------------------------------------------------------GAATCAAA----ATCAAT----TTC-----------------------------ATCGCTCATTCATCTCCCATT-----------AATACATCATCATTCGCGACTTCATTATCAGTCCCATACCCTGACGACTGATAGGCAGACGTTG---AATTCTATTAATTTAA----------TCGCCTTTCGGAATGAC----------------------------------------------------------------------------TTGCAGACGAGCCACACGGCGGACATCAAAACCTCCGTCCTGTTCTACTGCGGTAA
droPer2 scaffold_19:1466452-1466852 - ACAACATCTTGGAGACAGGATCCACTCCCGCCAAGAGCATCTACTATAACGTGAGTT-CAAA-------------------------------------------------------------------------------------------------------------------------------------------------AAC-------------------CA--------GCACA-G-----------------------------------------------------------------------------------------------------------A-TCTGCCA--GATCAT-------CAT---AGTG---CCAATTAAAAACTATT-AAATGACACATTCA-T--TTGAA-AACAG---AGAAAAATTGTT-CGTCATCCTCAATAGTTTCATTGATTACG---------ATGTCTGCTGATCTTATTTTGTGTTATATTACGTG------------------------------------------------------------GAATCAAA----ATCAAT----TTC-----------------------------ATCGCTCATTCATCTCCCATT-----------AATACATCATCATTCGCGACTTCATTATCAGTCCCATACCCTGACAACTGATAGGCAGACGTTG---AATTCTATTAATTTAA----------TCGCCTTTCCGAATGAC----------------------------------------------------------------------------TTGCAGACGAGCCACACGGCGGACATCAAAACCTCCGTCCTGTTCTACTGCGGTAA
droWil2 scf2_1100000004943:2409000-2409389 + dwi_3215 ACAACATCCTCGAAACAGGAGCAACGCCCGCCAAGAGTATTTACTATAATGTAAGTT-ACAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCTCTTGA------------------------------------------------TCTG---------AATTGTGCTATTCATCATCGTCGTCGTC---GTCA---TTAATTAAAAACAATT-AAATGACACATTCCCATTTTGAT-GCAAACTAAATAATGTTGCCCCGTCATTGTCAATAGTTTCATTGATAGCG------------TTAGCTGGT-------------------------------------------------------------------------------TTCATAATCCCACTGT--------------------------------CTAGCGATGCAACGCCC---------------------------------TTGATCATGATCATC----------CCAT-GGT-ATC----------------AACGAAAATTTAAATATTCTAA----------TCGCGTTTTCCCATGACTGGCATTATTT-TGA-AATT---------------------------T------GTTTT-------------CTGTTTGCAGACCAGCCACACGGCGGACATTAAGACTTCCGTCCTGTTCTATTGCGGCAA
droVir3 scaffold_13047:8085462-8085772 - dvi_15982 ACAACATCCTCGAAACAGGCGCCACGCCAGCCAAGAGCATTTACTATAACGTAAGTT-TCACACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAT-------CGT---GGCG---CCAATTAAAAGCAATT-AAACAACACATTTC-A--TTGACT-TGGG-CTTACAACA-TGCGCAGTC--------------------------------------------------------------------------ACCGTTTCACTGATAACT------------------------------------------------------------------------------------------------TATTTAATAACACTTAAAATATAGGAA--AAA---ATCAGCATCATCATCGTCATCATCGACACAATT--------------------------------------TTAA----------TCGCCCTTTGGAATGACTTGCATA---T-TGA-A--T---------------------------T------------------------GTTTTTTTAGACAAGCCATACGGCGGACATCAAAACATCCGTTTTATTCTATTGTGGCAA
droMoj3 scaffold_6540:28105292-28105637 + ACAACATCCTGGAGACAGGCGCCACGCCCGCCAAAAGCATTTACTATAACGTAAGTA-AAACACTTTG------------------------------------------------------------------C-------------------------------A--------------------------------------------------------------------------------------T---------------GCGATTA-----------------------------------------------------------------------------------------------------TTT---GATG---CCAATTAAAAACAATT-AAACGACACATCTC-A--TTCACT-TGGGGTGCTCAATA-TGCCCAGTCATTC----------------------------------------------------------------------ACGGTTTCACTGATAACT--------------TTAAATAGACAAAAACTATTTT-----------------GT----AAA-----------------------------AATATC-----A--------------------ATATCATCATCATCATCATCCGCGTT-----------------------------------------------------TTAA----------TCGCCCTTTCGAGTGACTTGCACT---TGTGA-A--T---------------------------TACTTTTGTTTTTGTTGTTATGCCTTTTTTTATAGACAAGCCACACGGCTGACATCAAAACATCCGTTCTATTCTACTGCGGGAA
droGri2 scaffold_15074:1536951-1537355 + ATAACATCCTGGAGACTGGCGCTACACCCGCTAAGAGCATTTACTATAACGTAAGTT-TCCCAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACC-T-----------------------------------------------------------------------------------------------------------A-CTTGTCA--TGTTCA-------CACATAATTT---CCAATTAAAAAGTATT-AAACGACACATTTC-A--TTGACT-------------------------------------------------------------GAGTGCTGAGTTCATAATTTGTTAAA-TATGACCAATCATCGTCGAATTGATAACTCACTTAAACTCGCTTTAAATAGACAAAAGCTAAGCT-----CGCACGAA----------CAA---------------------AGTGAC-------------G--------------------AAAACAGCACCATCATCATCAAC--------------A--------------------------------------ATTTTAA----------TCGCCCCACCGAATTAGTTGCATA---T-TTATA--TACAAATACATATACATTTATATATATATATATTTATTTTTTTTTCA-------ATGTTATAGACAAGCCATACGGCGGACATAAAAACATCCGTTTTGTTCTATTGCGGCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACAATATCCTGGAAACAGGAGCGACGCCTGCCAAGAGTATCTACTATAATGTAAGTA-CAAATTT---------------------------CCCATTTA------------------------------------------------------------------------------------------------------------------------------------AAATCTAATTTT-GATCTGTAGAATCTAATCCAATAAGCGTGTAGTTCGTACCTCCGAT------------------------------------------------AGTGAGTTGTACAAATTCTAGCG--AATCAT-------CTC------C---TCAATTAAAAACTATC----------------T--GTAAA-AATAG---CTAAATGTTGTCGCATCATCG----------CGGTGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTGTGAACCCCA---CA-------------------------------------------------------------T-----------AACACATCATAATCATCACTCGCCTTATCAGCTACACATCT--------------------TTC---GATTCAATTAATCCAA--TAATCCAAT----------GATGACTTGCAC------------------------------------------------------------------CTAATTGCAGACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTACTGCGGCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATGATCTTGT--------------------------------------------------------------------------TTGTGAACCC..................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATGATCTTGT--------------------------------------------------------------------------TTGTGAAC....................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---GATTCAATTAATCCAA--.............................................................................................................................................................1811.00100000100000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGACATCAAGACATCCGTG.................2211.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGTCACACGGCGGAC................................1811.00100100000000000000
..AATATCCTGGAAACAGGAGCGACGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000100000000000
........CTGGAAACAGGAGCGACGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACGGCGGACATCAAGAC........................2011.00100000000000000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGGCGGACATCAAGACATCCGT..................2511.00100000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACATCAAGACATCCGTGC................2111.00110000000000000000
.....................................................................................................................................................................................................................................................GATCTGTAGAATCTAATCCAATAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
...ATATCCTGGAAACAGGAGCGACGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGGCGGACATCA............................1520.50100000001000000000
droSec2
ACAATATCCTGGAAACAGGAGCGACGCCTGCCAAGAGTATCTACTATAATGTAAGTA-CAAATTT---------------------------CCCATTTA------------------------------------------------------------------------------------------------------------------------------------AAATCTAATTCC-GGTGTGTAGAATCTAATCCAATAAGCGTGTAGTTCGTACCTCCTAT------------------------------------------------AGTGAGTTGTAGAAATTCTAGCT--AATCAT-------CTC------C---TCAATTAAAAACTATC----------------T--GTGAA-AATAG---GTAAATGTTGTCGCATCATCG----------CGGTGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTGTGAATCCCACCACA-------------------------------------------------------------T-----------AACACATCATAATCATCACTCGCCTTATCAGTAACACATCT--------------------TTC---GATTCAATTAATCCAA--TAATCCAAT----------GATGACTTGCAC------------------------------------------------------------------CTAATTGCAGACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTACTGCGGCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCAAT----------GATGACTTGCAC------------------------------------------------------------------C...........................................................2111.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGTCACACGGCGGACATCAA...........................2311.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGTCACACGGCGGACATC.............................2111.0010001
..................................................................................................................................................................................................................................................................TAATCCAATAAGCGTGTAGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
dm3
ACAATATCCTGGAAACGGGAGCTACGCCTGCCAAGAGCATCTACTATAATGTAAGTA-CCAATTT---------------------------CCCATTTA------------------------------------------------------------------------------------------------------------------------------------AAATCTAATGCC-GATCTGTAGAATCTAATCCAATTAGCGTGTAGTTCATACCTCCTAT------------------------------------------------AGTGAGTTGTACAAATTCTAGCG--AATCAT-------CTC------C---TCAATTAAAAACTATC----------------T--GTGAA-AATAG---CTTAATATTGTCGCATCATCG----------CGGTGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTGTGAACCCCA---CA-------------------------------------------------------------T-----------AACACATCATAATCATCAATCGCCTTATCAGTTACACATCT--------------------TTC---GATTCAATTAATCCAA--TAATCCAAT----------GATGACTTGCTT------------------------------------------------------------------CTAATTGCAGACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTACTGCGGTAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---GATTCAATTAATCCAA--TAATC........................................................................................................................................................2412.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTGT........................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AAGAGCATCTACTATAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATCCTGGAAACGGGAGCTACGCCTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGAGTCACACGGCGGACATC.............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCACACGGCGGACATCAAGAC........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................GCCAAGAGCATCTACTATAATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACGGCGGACATCAAGACA.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TAGAATCTAATCCAATTAGCGTGTAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................ATTAGCGTGTAGTTCATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................ATGCC-GATCTGTAGAATCTAATCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------GATGACTTGCTT------------------------------------------------------------------CTAATTG.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AATATCCTGGAAACGGGAGCTACGCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TATCCTGGAAACGGGAGCTACGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---CA-------------------------------------------------------------T-----------AACACATCATAATCATCAAT..............................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TAGCGTGTAGTTCATACCTCCTAT------------------------------------------------AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA------------ACGGATGATCTTGT--------------------------------------------------------------------------G...........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................GAATCTAATCCAATTAGCGTGTAGTTCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................CAAGAGCATCTACTATAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droEre2
ACAATATCCTGGAAACTGGAGCAACGCCTGCCAAGAGTATCTACTACAATGTAAGTT-CTACTTT---------------------------TCTATTTA-------------------------------------------------------------------T------------GAGCTGGACTAT---------------------------------CATTT-AAGAACTTAACT--AATGT---------GAACCAATAAGTGTGTAGTTCATACCTCCTAT------------------------------------------------AGTCGGTTGTACAAATTCTACCA--AATCAT-------CTT------C---TCAATTAAAAATTATTTGAATGCCACATTCT----GTCAA-AATAG---CCCAATATTGTCGCATCATCG----------TGGCGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTGTGAACCCTA---AA-------------------------------------------------------------T-----------AACACATCATAATCATCACTCGCCTTATCAGTTACACATCT--------------------TTC---GAGTCAATTAATCCAA--TAATCCAAT----------GATGACTTGCGA------------------------------------------------------------------CTAATTGCAGACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTACTGCGGCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................CTCCTAT------------------------------------------------AGTCGGTTGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCCGTGCTCTTCTACTGCGGC..2511.0010100000
...ATATCCTGGAAACTGGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCGGACATCAAGACATCC....................2111.0011000000
droYak3
ACAATATCCTGGAAACAGGAGCGACGCCTGCCAAGAGCATCTACTATAATGTAAGTA-CTACTCT---------------------------T-CATATA------------------------------------------------------------------------------------------------------------------------------------AAAACTAATCTC-AATCT---------GATCCAATACGCGTGTAGTTCATGCCG-------------------------------------------------------------ATACACTTTCTACCG--AATCAT-------CTC------C---TCAATTAAAAACTATT-AAATTCCACACTCG----GTCAA-AATAG---CCCAATATTGTCGCATCATCG----------TGGCGATAAGA------------GCGGATGATCTTGT--------------------------------------------------------------------------TTGTGAACCCCA---CA-------------------------------------------------------------T-----------AACACATCATAATCATCACCCGCCTTATCAGTTGCACATCT--------------------TCC---GATTCAATTAATCCAA--TAATCCAAT----------GATGACTTGCGA------------------------------------------------------------------CTAATTACAGACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTACTGCGGCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............AAACAGGAGCGACGCCTGCCAAGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCAAGACATCCGTGCT...............2011.00100000010000
...ATATCCTGGAAACAGGAGCGACGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGTCACACGGCGGACA...............................1911.00100010000000
.................GGAGCGACGCCTGCCAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000
droEug1
ACAACATCCTCGAAACAGGATCCACGCCAGCCAAGAGTATTTACTATAATGTAAGTA-TAC--------TACCATAGAA---------TCCC--C-AAGAAAATCTCATCCCTATCATTCTCGTCCTTCATTGTATTCATCA----------------------------------------------------------------------A-----------ATAT------------TCTC-AATCTGTAAAATCTAATCATCAAATTTTGCAATTCTTAACTCTTGAAAAAAATTTAATATGTGTCAA----------------------------ATG---TGTAGCAATTCTGCCA--CATCAT-------CTT------G---TCAAT--------------------------------AAA-AATAG---CCAAATATTGTCGCATCATCG-------TCTTATTGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTGTGACCCCAG----ATCGGACGTATGT-----------------------------ATCACCCACTCGACTCATT---------------CACAT---------------------CA--TACACAGTT--------------------TTC---GAATCAATTAATCCTA----------T----------GATGACTTGCTA------------------------------------------------------------------TTAATTGCAGACGAGTCACACGGCGGACATCAAGACGTCCGTGCTCTTTTACTGCGGCAASizeHit CountTotal NormTotal
No Reads
droBia1
ACAACATCCTGGAAACGGGATCCACGCCTGCCAAGAGTATTTACTACAATGTAAGTG-TCTCACTATCCT-----A---GCTGTTACACTCC--C--------TCCCATGACCCATATTTAGGATT---A---GG-------------------------------A------------------------------AATTA----------A-----------AAATTCA--------GAACATAATCTGAACAATCTTATCAACTCAC------------AT----T-----AAGTTTA--ATGTGTCGG----------------------------ATGAGTTGTAG-GATTTTGCCA--CATCAT-------C-C------G---TCAATTAAAAACTATT-TAAAAACACATTCC-A--TTCAA-AACAG---CCAGAAGTTGTCTCATCATCC----------CGGTGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTGTGAACCCAG----ATCAGA----TGT-----------------------------ATCGCCCACTCG--------------------AAAACATCATCATCACCATTCGCCTTATCGGTTACACAGCT--------------------ATC---GATTCAATTAACCCAG----------T----------GATGACTTGCGA------------------------------------------------------------------CTAATTGCAGACGAGTCACACGGCGGACATCAAGACGTCCGTGCTCTTCTACTGCGGCAASizeHit CountTotal NormTotal
No Reads
droTak1
ACAATATCCTGGAAACGGGAGCCACACCTGCCAAGAGCATTTACTACAATGTAAGTA-TCC--------TGTTATAATA---------CTTC--C--------TCTTATGACTAATTTTTTGGATTTTTG---GA-------------TTATTAAG--------AATT------------GAATTT-----------------------------------GAATTCTAT-GAAA-------TC-AATCTGAAAAATCTAATCATTTATGCCTGTCATTCATTC----TA-----AATATTATATGTGTCAG----------------------------A-------TCATAATTTTGCCG--CATCAT-------CTC------G---TTAATTAAAAACTATT-ATAA------------------------G---CCAAATGTTGTCGCATCATCG----------TAGAGATAAGC------------GCAAATGATCGTGT--------------------------------------------------------------------------TTTTGAACCCAG----AT------------------------------------------------------------C-----------AGATCATCATCATCATCGTTCGCCTTATCAGTTACACGACT--------------------CTT---GATTCAATTAATCCAA----------T----------GATGACTTGCGA------------------------------------------------------------------CTAATTGCAGACGAGTCACACAGCTGACATCAAGACGTCGGTGCTGTTCTACTGCGGAAASizeHit CountTotal NormTotal
No Reads
droEle1
ACAATATCCTGGAGACGGGAGCCACGCCTGCCAAGAGCATTTACTACAATGTAAGTA-TGC--------TGCCATAATAATAATATATCTGTT-------------------------------------------CCATTATCCATTTTATAAAC--------ACAT------------GCGCTT-----------------------------------GACCCCTTT-AAAATC--------TGTCTGTAAAATCTAATCAACTAAGC-TGTAA----TACCTTCTATAAATAATATTTG-------------------------------------ATGAGTTGTAAAAATTCTGCCA--CATCAG-------CTA----GTCTCAATAATTAAAAACTATT-AAATGCCACATTCC-A--TTCAA-AATAG---CTAAATGTTGTCGCATCATCG----------TGGCGATAAGA------------ACGGATGATCTTGT--------------------------------------------------------------------------TTTTGAACCCAA----ATCAGA----TGT-----------------------------ATCATCCGAG------------------------TACCTCCTAA---TCATTCTCCTTATCAGTTACACCGCT--------------------CTC---GATTCAATTAATCCAA----------T----------GATGACTTGCAC------------------------------------------------------------------CCAATTACAGACGAGTCATACGGCGGACATCAAGACGTCGGTGCTCTTCTACTGCGGCAASizeHit CountTotal NormTotal
No Reads
droRho1
ACAACATCCTAGAAACGGGTGCCACGCCTGCCAAGAGCATTTACTATAATGTAAGCC-CGC---T--------ATA---TCTTTTATATTTC--A--------ATCCATGACTCTTTTTT------TTTG---CC-------------TAATTAATCTCATCTAAAGTCAATTACCCTATTAACCAGTCTTACTTTT---ACAA----TCTCAACTATAGTCAACTCTAT-TA--------GAC-TATCTGAAAAGTCAAATCAAATAGGCTGGCAAATCAAACA-TATAAAAATAATCTTAG-------------------------------------ATGAGTAGTAGAAATTATGCCA--CATCAT-------CTC---GTAA---ATAATTAAAAACTATT-ATGTGCCACATTTC-A--TTCAA-AATAA---CCAAAAGTTGTCGCATCATCG----------TAGCGATAAGA------------ACGGATGATCTTGA--------------------------------------------------------------------------TTTTGAACCCAG----A---------TGT-----------------------------ATCACTC---------------------------CACTTCCTCATAATCATTTGCCTTATCAGTTACACGGCT--------------------CCC---GATTCAATTAATCCAA----------T----------CATGACTTGTGC------------------------------------------------------------------CTAATTACAGACGAGTCATACGGCGGACATCAAGACGTCTGTGCTCTTCTACTGCGGCAASizeHit CountTotal NormTotal
No Reads
droFic1
ACAACATCCTGGAAACAGGATCCACGCCTGCCAAGAGTATTTACTACAATGTAAGTA-TCC--------T-----A---ATAGTTATTCTCTT-------------------------------------------TCATTA----------------------------------------------------------------------A-----------ACATAC-GAAA-------TC-AATCTGTAAGATCTAATCAGA--CGC----AGTT--------ATATAAATAGAA----ATGT-----ATGTGTAATAG-----------------ACAAGCTTCATAAATTTTGCCA--CCTCAT-------CTC---CAAG---ATAATTGGTAATAATT-AAACGCCACATCCC-A--TTGAA-AATAG---TCAAAAGCTGCAGCATCATCG----------TAGTGATAACA------------ACGGATGATCT-GT--------------------------------------------------------------------------TTTTGACCCCAA----GTCAGA----TGTATCGCCCCATTGAATCACTC-----------------------------T-----------AGCAAC---------TCATCGGCCTTATCAGTTACACCGTT--------------------TTC---GATTCAATTAATCCAA----------T----------GATGACTTGCGA------------------------------------------------------------------CTTATTGCAGACAAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTACTGCGGCAASizeHit CountTotal NormTotal
No Reads
droKik1
ACAATATCCTGGAGACGGGAGCCACGCCCGCCAAGAGCATCTACTATAACGTGAGTAACTAATTT---------------------------T--------------------------TT----------------------------------------------------------------------------------------------------------------------------AATTTATAGAATTTAA---A--------------------------------------ATG------ATGTTTA-GAGATACTGAATTTCGTCAG---------CGGAATTGTGCCA--CATCAC-------CTC---GAGA---TTAATTAAAAACTATT-AAATGACACATTCC-AT-TCAAA-AACAA---CCAAATATTGTAGCGTCATCG----------TGGCGATAAGCTGAGCTACTGCTGCTGCTGATCTTGT--------------------------------------------------------------------------TTTTGATCCCAG----AGCAAT----TGC-----------------------------AACGCTCACCCATTT------------------------CCCCATCATTATCAACCTTATCGCTTACGATGCT-TTC----------------TTC---GATTCAATTAATCCAAGCTAATCCAA---CCTCTACGAATGACTTGCGA------------------------------------------------------------------CTAATTACAGACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTATTGCGGCAASizeHit CountTotal NormTotal
No Reads
droAna3
ACAATATTCTGGAAACTGGAGCCACGCCCGCCAAAAGTATTTACTATAATGTGAGTA-TTGTGCTCCG------------------------------------------------------------------C-------------------------------A------------------------------AATTATAAATAAT-------------------CA--------TCTAC-G-----------------------------------------------------------------------------------------------------------A-TCTGCCA--CATCAT-------CTT---GGTC---TCAATTAAAAACT-TT-AAATGACACTTGCC-A--TTGAA-AAAAG-CACAAAATATTGTCGCATCATGC----------CACTGATAAGA------------GATGCTAATATTGT--------------------------------------------------------------------------TTT-----------------GT----TGC-----------------------------AACGCCAGCTCATCTCATTTTAATTTTAAAAT--TAA---ATCGTCCTCGATTTTCTTATCAGTTACATGACT--------------------TTC---AATTCAATTAATCCCA-----------------ACCGGATGACTTGCGA------------------------------------------------------------------CTAATTGCAGACAAGCCACACCGCCGACATCAAGACGTCCGTGCTCTTCTACTGCGGCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCAAGACGTCCGTGCTC..............2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGT--------------------------------------------------------------------------TTT-----------------GT----TGC-----------------------------AACGCCAG..........................................................................................................................................................................................................................................................................2111.001000100
..AATATTCTGGAAACTGGAGCCACGCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
droBip1
ACAATATCCTGGAAACTGGAGCCACGCCCGCCAAAAGTATTTACTATAATGTGAGTA-TCA--------TCTAATAATA-----------------------------------------------------------------------------------------------------------------------------AATAAT-------------------CA--------TCTA--------------------------------------------------------------------------------------------------TG--------AGA-TTTGCCA--CATCAT-------CTT---GGTG---TTAATTAAAAACTATT-AAATGGCACTTGCC-A--TTGAA-AAAAAACACAAAATATTGTCTCATCATTG---------CCACTGATAAGA------------GATGCTAATATTGT--------------------------------------------------------------------------TTT-----------------GT----TGC-----------------------------AAAGCCAGCTCATCTCATTTTAATTTTAAAAG--TAA---ATCGTCATCGTTTCTCTTATCAGTTACATGACT--------------------TTC---AATTCAATTAATCCCA---------AT--------TGGATGACGTGCGA------------------------------------------------------------------CTAATTGCAGACAAGCCACACGGCCGACATCAAGACCTCCGTGCTCTTCTACTGCGGCAASizeHit CountTotal NormTotal
No Reads
dp5
ACAACATCTTGGAGACAGGATCCACTCCCGCCAAGAGCATCTACTATAACGTGAGTT-CAAA-------------------------------------------------------------------------------------------------------------------------------------------------AAC-------------------CA--------GCACA-G-----------------------------------------------------------------------------------------------------------A-TCTGCCA--GATCAT-------CAT---AGTG---CCAATTAAAAACTATT-AAATGACACATTCA-T--TTGAA-AACAG---AGAAAAATTGTT-CGTCATCCTCAATAGTTTCATTGATTACG---------ATGTCTGCTGATCTTGTTTTGTGTTATATTACGTG------------------------------------------------------------GAATCAAA----ATCAAT----TTC-----------------------------ATCGCTCATTCATCTCCCATT-----------AATACATCATCATTCGCGACTTCATTATCAGTCCCATACCCTGACGACTGATAGGCAGACGTTG---AATTCTATTAATTTAA----------TCGCCTTTCGGAATGAC----------------------------------------------------------------------------TTGCAGACGAGCCACACGGCGGACATCAAAACCTCCGTCCTGTTCTACTGCGGTAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACAACATCTTGGAGACAGGATCCACTCCCGCCAAGAGCATCTACTATAACGTGAGTT-CAAA-------------------------------------------------------------------------------------------------------------------------------------------------AAC-------------------CA--------GCACA-G-----------------------------------------------------------------------------------------------------------A-TCTGCCA--GATCAT-------CAT---AGTG---CCAATTAAAAACTATT-AAATGACACATTCA-T--TTGAA-AACAG---AGAAAAATTGTT-CGTCATCCTCAATAGTTTCATTGATTACG---------ATGTCTGCTGATCTTATTTTGTGTTATATTACGTG------------------------------------------------------------GAATCAAA----ATCAAT----TTC-----------------------------ATCGCTCATTCATCTCCCATT-----------AATACATCATCATTCGCGACTTCATTATCAGTCCCATACCCTGACAACTGATAGGCAGACGTTG---AATTCTATTAATTTAA----------TCGCCTTTCCGAATGAC----------------------------------------------------------------------------TTGCAGACGAGCCACACGGCGGACATCAAAACCTCCGTCCTGTTCTACTGCGGTAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGCCACACGGCGGACATC.............................2111.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGCGGACATCAAAACC.......................1911.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGCGGACATCAAAACCTC.....................2111.001100000
droWil2
ACAACATCCTCGAAACAGGAGCAACGCCCGCCAAGAGTATTTACTATAATGTAAGTT-ACAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCTCTTGA------------------------------------------------TCTG---------AATTGTGCTATTCATCATCGTCGTCGTC---GTCA---TTAATTAAAAACAATT-AAATGACACATTCCCATTTTGAT-GCAAACTAAATAATGTTGCCCCGTCATTGTCAATAGTTTCATTGATAGCG------------TTAGCTGGT-------------------------------------------------------------------------------TTCATAATCCCACTGT--------------------------------CTAGCGATGCAACGCCC---------------------------------TTGATCATGATCATC----------CCAT-GGT-ATC----------------AACGAAAATTTAAATATTCTAA----------TCGCGTTTTCCCATGACTGGCATTATTT-TGA-AATT---------------------------T------GTTTT-------------CTGTTTGCAGACCAGCCACACGGCGGACATTAAGACTTCCGTCCTGTTCTATTGCGGCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGCGGACATTAAGAA........................1811.00110000
........CTCGAAACAGGAGCAACGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAAGACTTCCGTCCT...............2011.00100010
...................................................................................................................................................................................................................................................................................................................................................................TGTGCTATTCATCATCGTCGTCGTC---GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
..........CGAAACAGGAGCAACGCCCGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCGTCCTGTTCTATTGC.....2011.00110000
ACAACATCCTCGAAACAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
................AGGAGCAACGCCCGCCAAGAGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.................GGAGCAACGCCCGCCAAGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
droVir3
ACAACATCCTCGAAACAGGCGCCACGCCAGCCAAGAGCATTTACTATAACGTAAGTT-TCACACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAT-------CGT---GGCG---CCAATTAAAAGCAATT-AAACAACACATTTC-A--TTGACT-TGGG-CTTACAACA-TGCGCAGTC--------------------------------------------------------------------------ACCGTTTCACTGATAACT------------------------------------------------------------------------------------------------TATTTAATAACACTTAAAATATAGGAA--AAA---ATCAGCATCATCATCGTCATCATCGACACAATT--------------------------------------TTAA----------TCGCCCTTTGGAATGACTTGCATA---T-TGA-A--T---------------------------T------------------------GTTTTTTTAGACAAGCCATACGGCGGACATCAAAACATCCGTTTTATTCTATTGTGGCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..AACATCCTCGAAACAGGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000200000000000000000000000
........................CGCCAGCCAAGAGCATTTACTATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000100000000000000000000000000000000000000000000000
...................CGCCACGCCAGCCAAGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
ACAACATCCTGGAGACAGGCGCCACGCCCGCCAAAAGCATTTACTATAACGTAAGTA-AAACACTTTG------------------------------------------------------------------C-------------------------------A--------------------------------------------------------------------------------------T---------------GCGATTA-----------------------------------------------------------------------------------------------------TTT---GATG---CCAATTAAAAACAATT-AAACGACACATCTC-A--TTCACT-TGGGGTGCTCAATA-TGCCCAGTCATTC----------------------------------------------------------------------ACGGTTTCACTGATAACT--------------TTAAATAGACAAAAACTATTTT-----------------GT----AAA-----------------------------AATATC-----A--------------------ATATCATCATCATCATCATCCGCGTT-----------------------------------------------------TTAA----------TCGCCCTTTCGAGTGACTTGCACT---TGTGA-A--T---------------------------TACTTTTGTTTTTGTTGTTATGCCTTTTTTTATAGACAAGCCACACGGCTGACATCAAAACATCCGTTCTATTCTACTGCGGGAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATAACATCCTGGAGACTGGCGCTACACCCGCTAAGAGCATTTACTATAACGTAAGTT-TCCCAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACC-T-----------------------------------------------------------------------------------------------------------A-CTTGTCA--TGTTCA-------CACATAATTT---CCAATTAAAAAGTATT-AAACGACACATTTC-A--TTGACT-------------------------------------------------------------GAGTGCTGAGTTCATAATTTGTTAAA-TATGACCAATCATCGTCGAATTGATAACTCACTTAAACTCGCTTTAAATAGACAAAAGCTAAGCT-----CGCACGAA----------CAA---------------------AGTGAC-------------G--------------------AAAACAGCACCATCATCATCAAC--------------A--------------------------------------ATTTTAA----------TCGCCCCACCGAATTAGTTGCATA---T-TTATA--TACAAATACATATACATTTATATATATATATATTTATTTTTTTTTCA-------ATGTTATAGACAAGCCATACGGCGGACATAAAAACATCCGTTTTGTTCTATTGCGGCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........GAGACTGGCGCTACACCCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATAAAAACATCCGT..................1811.00110
...........GAGACTGGCGCTACACCCGCTAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101

Generated: 05/18/2015 at 07:09 PM