ID:

dsi_10664

 Coordinate:

2r:5349793-5349942 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.1 -4.6 -4.5 -4.3

Flybase annnotation

CDS [2r_5349664_5349792_+]; exon [2r_5348878_5349792_+]; intron [2r_5349793_5358920_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TACGCACCAGCTGGGTGGACGCCCAAGTGGCGCTCGATCAGATAGATAAGGTGAGTGCCCAGCTACAGTGAACTATCACTGTGAAGGATAGCCATGTTGAGTTCTATAATAGTGTTGAATCGTATTCGGAAGATCCTTTATAAGTTTAAATTGAAAATCTGGTTCTTTAGTTACTTTTGTTAGTAATCCCCTTTACTTCAAATTAAGAAAGAGCTTTGAAGTACTTGGTCAATTTAAAAATTGTTCATTA
**************************************************************************************************((............................(((((.((........................)).)))))..))****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
...........................TGACGCTCGATCAGATAGAGCA......................................................................................................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0
...............................................................................................................................................................................................................AAAGAGCTTTGAAGTACTTGGTC.................... 23 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................GAGTTCTATAATAGTGTT...................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................AAGAGCTTTGAAGAAGGTGGTC.................... 22 3 1 1.00 1 1 0 0 0 0 0 0
.........................................ATAGATAAGGTGAGTGCCCAG............................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
....................GCCCAAGTGGCGCTCGATCAGATA.............................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................................................................................AATCTGGTTCTTTAGTT.............................................................................. 17 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................GAGCTTTGAAGTAGTTGTTGAA.................. 22 3 2 0.50 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TAGTATTTGGTCGATTTAAAAA.......... 22 3 3 0.33 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................CTTGGTCGATTTAAGAAT......... 18 2 5 0.20 1 0 0 1 0 0 0 0
........................................................................................CGGCCATGTTGAGTTCTAAA.............................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 1 0
.................................................................CAGTGAACTGTAATTGTGAA..................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TATTTGGTCGATTTAAAAA.......... 19 2 11 0.09 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCTTGGTCGATTTAAGAAT......... 20 3 16 0.06 1 0 0 1 0 0 0 0
....................................................................................AGGATAGCAGTGTTGAATT................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 1
....................................................................TGAACTATTACCGTGA...................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

ATGCGTGGTCGACCCACCTGCGGGTTCACCGCGAGCTAGTCTATCTATTCCACTCACGGGTCGATGTCACTTGATAGTGACACTTCCTATCGGTACAACTCAAGATATTATCACAACTTAGCATAAGCCTTCTAGGAAATATTCAAATTTAACTTTTAGACCAAGAAATCAATGAAAACAATCATTAGGGGAAATGAAGTTTAATTCTTTCTCGAAACTTCATGAACCAGTTAAATTTTTAACAAGTAAT
******************************************************************************((............................(((((.((........................)).)))))..))************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR902008
ovaries
......................................................................................................................TAGCATAAGCCTTCTAGGAAA............................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................CCACTCACGGGTCAATGTCACTT.................................................................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................CGGTACAACTCAAGATATTATCACAACTT................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................TCCTATCGGTACAACTCAAGATATT............................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................ATAGTTAAATTAAACTTTTAGACC........................................................................................ 24 3 2 0.50 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................TTAGTTCTTTCTCGAGACT............................... 19 2 4 0.25 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................TTAGTTCTTTCTCGAGAGTTC............................. 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................CTTTCTCGAAACTTGA............................ 16 1 6 0.17 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................CGCGAATCTTCAAGAACCA..................... 19 3 13 0.15 2 0 0 0 0 0 2 0 0 0
...................................................................................................TCAAGCTATTAGCACAAGTT................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................AGGAAAGAGTCAGATTTAAC................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 1
................................................................................................................................................................CCAAGAAGACAATGAAAA........................................................................ 18 2 20 0.10 2 0 0 0 0 0 2 0 0 0
......................................................................................................................................................AACTTTTAGGCCAACAAATG................................................................................ 20 3 18 0.06 1 0 0 0 1 0 0 0 0 0

Generated: 04/23/2015 at 01:11 PM