ID:

dsi_10663

 Coordinate:

2l:6690944-6691093 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.9 -12.8 -12.5 -12.5

Flybase annnotation

exon [2l_6691094_6691173_+]; five_prime_UTR [2l_6691094_6691173_+]; intron [2l_6689192_6691093_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTGTAAATTAAACAAAAATACAACCATAGCCCTGGCCTTTAATTTTAATAAATTCAGTCTGCCAATAACAACAATTAATTATTCCAATTTGTTTTTTCCTGTGTAGCAATTCAATTAACCAGATTTCTTTTATTCTATGTGTATCTTTCCATGTGCCTGCTACAAAAACAAACCGACGACATCGATATTGTTACGATAGAAAGTTACGTGTGAACTTCGTGGCTTTTGTTTAATTGTTTTGAAGGAAAA
********************************************************************************((.(((((((((((((......(((((((...((.......((((..................)))).......))..))))))))))))))...............))))....))))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 O001
Testis
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
...........................................................................................................................................................................................................................GTGGCTTTTGTTTAATT.............. 17 0 1 2.00 2 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................ATTGTTTTGAAGGAA.. 15 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTGAACTTCGTGGCTTTTGT.................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CGTGGCTTTTGTTTAATTGTTTTGAAGGAA.. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TACGTGTGAACTTCGTGGCTT........................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................GTGAACTTCGTGGCTTTTGTTTAATT.............. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ACGTGTGAACGTCGTGGCTTTA...................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................AATTGTTTTGAAGGAAAA 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TACGTGTGAACTTCGTGGCT......................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................CGAAAGCTACGTGTGAACTTCGTGGCT......................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................TATTCCAATTTGTTTTTTC....................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................TGGCTTTTGTTTAATTGTTTTGAAGGA... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................CATCGATATTGTTACGATA................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................GTGTGAACTTCGTGGCTTTTGT.................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TAATTGTTTTGAAGGAAAA 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTTGTTTAATTGTTTTGAAGGAA.. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................AACGTTCCGTGTGAACTTCGTGGCTTTTG..................... 29 2 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................AAAGTTACGTGTGAACTTCGTGGCT......................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................GTGAACTTCGTGGCTTTTGTTTAAT............... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................AATTGTTTTGAAGGAA.. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GTGTGAACGTCGTGGCTTTTGTTTAATT.............. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAAAGTTACGTGTGAA................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAAAGTTACGTGTGAACTTCGTGGCT......................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................CAAAAACAAACCGACGACATC.................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................AGTTACGTGTGAACTTCGT............................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................GACGCCATCGTTATTGATACG...................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................CAAACGAAAGTTACGTGTGAACTT................................ 24 3 3 0.33 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................AAACGAAAGTTACGTGTGAACTT................................ 23 3 3 0.33 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTTAATTGTTTTGAA...... 15 0 4 0.25 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................AACGAAAGTTACGTGTGA.................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................ACAAAAACAGTCCGACGATA.................................................................... 20 3 14 0.14 2 0 0 0 0 0 1 0 1 0
......................................................TCAGTCTGCCAATAAAAAAAAA.............................................................................................................................................................................. 22 3 16 0.06 1 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................TGGTTAATTGTTTTGAAA..... 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

AAACATTTAATTTGTTTTTATGTTGGTATCGGGACCGGAAATTAAAATTATTTAAGTCAGACGGTTATTGTTGTTAATTAATAAGGTTAAACAAAAAAGGACACATCGTTAAGTTAATTGGTCTAAAGAAAATAAGATACACATAGAAAGGTACACGGACGATGTTTTTGTTTGGCTGCTGTAGCTATAACAATGCTATCTTTCAATGCACACTTGAAGCACCGAAAACAAATTAACAAAACTTCCTTTT
***************************************************((.(((((((((((((......(((((((...((.......((((..................)))).......))..))))))))))))))...............))))....))))******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.............................................................................................................................................................................AGCTGCTATAGCAATAACAATGCTA.................................................... 25 3 1 5.00 5 3 1 1 0 0
............................................AAATTTTTTAAGTCAGA............................................................................................................................................................................................. 17 1 5 0.40 2 0 0 0 2 0
......................................................................................TTAAACAAAAAAGGCCA................................................................................................................................................... 17 1 6 0.17 1 0 1 0 0 0
............................................AAATTGTTTTAGTCAGAAGGT......................................................................................................................................................................................... 21 3 7 0.14 1 0 1 0 0 0
.............................................AATTTTTTAAGTCAGA............................................................................................................................................................................................. 16 1 10 0.10 1 0 0 0 1 0
.................................................................................................................................................GAAAGTTACCTGGACGATGT..................................................................................... 20 3 10 0.10 1 1 0 0 0 0
.................................................................................TAAGGTTAAACAAAA.......................................................................................................................................................... 15 0 11 0.09 1 0 0 0 0 1
..........................................................................................................................................................AGGGACGATGTTTTT................................................................................. 15 1 17 0.06 1 1 0 0 0 0
.............................................AATTGTTTTAGTCAGAAGGT......................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0
........................................................................................................................................................................TGTTAGGCTATTGTAGCTA............................................................... 19 3 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:6690894-6691143 + dsi_10663 TTTGTAAATT--AAACAAAAATACAA--CCATAGCCC----------------------------------TGGCCTTTAATTTTAATAAA-----------------------------------------------------------------------------------------------------------------------------------------TTCAGTCTGCC--AA--TAACAACAATTAATTATTCC------------A------------------A----------------------------------------------TTT--------------G--TTTTTTCCT--GTGT------AGC--AATTCA-ATTAACCAGATTTC--TTTTATTCTAT--GTG-------TATCTTTCCATGTG----------------CCTGCTA----CAAAAACAAAC---------------------------C---G---AC------GACATCGATAT------------TG------TTACGATAGAAAGTTACGTGTGAACTTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------A
droSec2 scaffold_3:2456230-2456477 + TT-GTAAATT--AAAAAAA-ATGCAA--CCATAGCCC----------------------------------TGGCCTTTAATTTTAATAAT-----------------------------------------------------------------------------------------------------------------------------------------TTCAGTCTG--AAAA--TAACAAAAATTAATTATTCC------------A------------------A----------------------------------------------CTT--------------G--TTTTTTCCT--GTGT------AGC--AATTCA-ATTAACCAGATTTC--TTTTATTCTAT--GTG-------TATCTTTCCATGTG----------------CCTGCAA----CAAAAACAAAC---------------------------C---G---AC------GACATCGATAC------------TG------TTACGATAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------A
dm3 chr2L:6922532-6922782 + AATGTAAATT--TAAAAAAATTTCAA--CCATAGCCC----------------------------------TGGCCTTTAATTTTAATAAC-----------------------------------------------------------------------------------------------------------------------------------------GTCAGTTTGCA--AA--TAACCAAATT-AACTATTCC------------A------------------C----------------------------------------------CTT--------------G--TTTTTTCCT--GTGT------AGC--AATTCG-ATTAACCGGATTTC--TTATATTCTAT--GTG-------TATCTTTCCATGTG----------------CCTGCAA----CAAAAACAAAC---------------------------C---G---AC------GACATCGATAT------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAAAA-------------------------------------A
droEre2 scaffold_4929:15837508-15837735 + CAT-------------------------TCACAGCCC----------------------------------TGGTGTTTTATTTTAAA--A-----------------------------------------------------------------------------------------------------------------------------------------ATCCGTTGGCAAAAA--TAACAAAATTAAAATATTTC------------A------------------A----------------------------------------------C-T--------------G--TTTTTCCCT--GTGT------AGC--ATTTTT-ATTAACCAGATTTC--TTTTATTCTAT--GTG-------TATATTTCCATGTG----------------CCTGCAA----CAAAAACAAAC---------------------------C---A---AC------GATATCGATAT------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------A
droYak3 2L:5986774-5987013 - TCTGTATAAT--AAATAA--ATACAT--TTATAGCCC----------------------------------TGGTGTTT-----TAAT--------------------------------------------------------------------------------------------------------------------------------------------ACCAATGTA--AAAA--CAACCAAATTGATATATCTA------------A------------------A----------------------------------------------CTT--------------G--TTTTTCCCT--GTGT------AGC--CATTTG-ATTAACCAGATTTC--TTTTATTCTAT--GTG-------TATCTTTCCATGTG----------------GCTGCTA----CAAAAACAAAC---------------------------C---A---AC------GACATCGATAT------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------A
droEug1 scf7180000409463:2190587-2190862 - TGTGAGACTT--AAGAAAAAAGATCT--TCACAGCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATTTCAGTCC--------------------------------------------TGACTAGTATCTTCGAATTTGTCTAAATATTTGTCTAAGATAAAACTTATATACTTTTCGATTTTAGATTAAGGTAGTAAA--CTTTTTTCT--GTGT------GGC--GATTTT-ATTAACAAAATTTC--TTTCATTCTAT--CTG---------TCTTTCCATGTA----------------CCTGCAA----CAA-----------------------------------C---A---AC------AACATCGATAT------------TG------TTACGTTAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------A
droBia1 scf7180000302422:2703519-2703828 + TATGCATTT---------------------CTAG-----------------CTAAAAAACAGGAATTACTTAAACCCTCTCTTTTGATACCGGAAGA-AAG-----------------------TGC-ATTTCCAATTTTCTATTTAAAATTGAA--AATAATCCAGAGCGCATA------------------------------------------------------ATAGTT--------ACTAATTAACATCATTCATTCCATATTGATA--------T-------------T----------------------------------------------CTT--------------G--TTTTTCTCT--GTGT------AACTAAATGTG-ATTAACCAGATTTC--TTCTATTCTAT--CTG-------TATCTTTCCATGCG----------------CCTGCGA----ACAACTACAAC---------------------------A---A---AC------AACATCGATAT------------CG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGAA------------------------------------------
droTak1 scf7180000415104:55724-55924 + TTTGAAGAT-------------------TCACATCTG----------------------------------T----------------------------------------------------T-------------------------------------------------GAA--------------------------------------------------TTTCCG----------------------------------TTTCT--------------------------------------------------------------------CTTTTA--------------A--TTTTTTTCT--GTGT------AGC--CATTTA-ATTAGCCAGATTTC--ATTAATTCTTTTTCTG-------TATCTTTCCATGTG----------------CCTGCAA----ACGAATACCAC---------------------------A---A---AC------AACATCGATAT------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------A
droEle1 scf7180000490970:151723-151965 + TCTTTAATTC--AG--ATA--CATAGT-------------------------TAA-------------------------------------------------------------------------ATTAACAAATGTATGTTTTAAATTAAATAAATAATC-AGAA--TATAAA--------------------------------------------------TTTAGG----------------------------------TTTGTTATCTT------------------A----------------------------------------------ATG--------------ATTTTTTTTTCT--GTGT------AGC--GATTTG-ATTAACCAGATTTC--TTTTATTTCATCTCTG-------TCTCTTTCCATGCG----------------CCTGCAA----CAA--------------------------------------------C------AACATCAATAA------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGGAA---------------------------------------A
droRho1 scf7180000780014:100466-100761 + TTTATGAATAATA---------ATA---------------ATTTTTATTACGCGGGAAAAC--------------------------------AAAGAAAATCGTAGGACAAATGAGGCATTTGG--------------------AT---------------------------GAAGAATACTTCTTAATGTGATACAAAATACAATTATAAATTTATGTCGTAAAAATTAATT--------TC--------------------GATTTGATAACTA------------------A----------------------------------------------CTG--------------A--TTTTTTCTT--GTGT------AAC--GATTTG-ATTAACCAGATTTC--TT---TTTTAT--CTG-------TATCTTTCCATGTG----------------TCTGCAA----CAA--------------------------------------------C------AACATCAATAA------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------A
droFic1 scf7180000453815:285172-285426 + TGTGAAACCG--AAAAAAA--CATAGTTTCAACTACG----------------------------------T----------------------------------------------------T--------------------AT---------------------------GAAGATTACGTTTCTACGGCTTACACAAT-----------------TTGTAAAGATCAGTCTT--AACA--TAACTAAACGG----CTTAA------------A------------------A----------------------------------------------ACT--------------G--ATTTTGTTT--GTGA------A-C--CATTTA-ATTAACCAGATTTC--ATAAATTTTAT--CTC-------TTTCTTTTTATGCA----------------CCTGCAA----CAA--------------------------------------------C------AAAATCGAAAA------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------A
droKik1 scf7180000302468:226520-226654 - TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-ATTAACAAG-TTTCTATTTTATTCTATCTTTA-------TATCTTTTCATGTG----------------CCTACTATAAACAA-----------------------------------C---A---AC------ATCGTCGATAA------------TG------T----GTAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAACGGAA---------------------------------------A
droAna3 scaffold_12916:8503422-8503588 + TCAGTCAGT----------------------------C--GT----------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCC--AA--TAACCGACA-----------------------------------------------------------------------------------------------------------------------------------------TATT-ATAGCCAAGATTTC--TTAAATTCTATCTTTG-------TATCTTTCCATGTG----------------CCTGCTACCAACAA-----------------------------------C---A---ACAACAACAACATTGGA--------------TG------T----GTAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGAACA---------------------------------------A
droBip1 scf7180000396572:2895031-2895239 - TCGAG-ATC----AGT-------------CAG--T--CCAGTCTTTA--------------------------------------AAA--------------------------------------------------------------------------------------------------------------------------------------------GC----CAGCC--AA--TAACCGACTT-AATAA-----------------------------------------------------------------------------------------------------------------------------------------AGCCAAGATTTC--TTAAATTCTATCTTTG-------TATCTTTCCATGTG----------------CCTGCTA----CCAAC--CAACAAACAACAACTACAACACCACCACCACCAACA---AA------AACAACGAT---------------G------T----GTAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGAACA---------------------------------------A
dp5 4_group5:419114-419281 + CTTTA-----------------------------------GTTTTTA---GCCAAGAAAAA--------------------------------AAAG-AAG--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------------------ATTTTG-ATTAACA--ATTTC--TTTAAATCGTT--CTG-------TATCTTTCCATGTG----------------TACGCCA----CCAC--------------------------------------AATCAC------GACAACGATTCCATCT---------------T----GTAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAGTT-ATTTTGAAGGAGAGA-------------------------------------A
droPer2 scaffold_5:4917289-4917458 + CTTTA-----------------------------------GTTTTTA---GCCAAGAAAAA--------------------------------AAGA-AAG--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------------------ATTTTGAATTAA-CAACTTTC--TTTAAATCGTT--CTG-------TATCTTTCCATGTG----------------TACGCCA----CCAC--------------------------------------AATCAC------GACAACGATTCCATCT---------------T----GTAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAGTT-ATTTTGAAGGAGAGA-------------------------------------A
droWil2 scf2_1100000004585:6770048-6770208 + TTACT------------------------CAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATA-CATCTTTA-------TTTTTTTTCATGTG----------------CCGCCTT----TAA--------------------------------------------C------AAC--CGAT--------TAA---TCAACCAAT----TTAGAAAGTTACGTGTGAACGTCTTGGCTTTTGTTTAAACAATTTTGAAAACCAGCATACA-----ACACCAACAAAAAAATCTAGCAACTCAA
droVir3 scaffold_12963:14747844-14748049 - TTTAC-----------------------TTTTAACTG----------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG--------------A--TATTT--CTTTTTACTGATCTGAT--GATTTG---------CATTTT--T----TTCTTT--ACGCATAAAATATTTTTCATGACT----------------TCCGCTA----CAA-------C---------------------------C---G---AC------AAC-TGGACAT---CTTTAATAATA----------ATTAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAATT-ATTTTGAAAAATA--ATAAAAAAAAAAAAAAAATATAAAT-----AAAAAAAA
droMoj3 scaffold_6500:17687070-17687249 - AGTTA--ATT--A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------GATTTAGT-----TTTAACTG---------------------------------------------------------TTG--------------G--TATTT--GTT-ATACT----------GATCTG-ATTTAC---AT-----TTTTTTTCTTT--ACACATAAAA--------ACAACTTCCGCATATACCGACACATGG--------------------------------------------------ACAT------CGCATCGTTGT---------TAATA----------ATTAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAATT-ATTTTGAATAATA---------------------------------------A
droGri2 scaffold_15126:4615715-4615936 + AATGTGGCC---------------------------A----------------------------------GAG-----------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTT--------AC--------------------GATTTAGT-----TATAA-------------C----------------------------------------------TTG--------------G--TATTTCTTT--ATGCT-----GAT--AATTTG-AT--------ATTT--TTTCATTGCATGTTTG-------TATTTTTCATCACTTCCGCAACAACTGACGCCTGG------------------------------------------------------------------GG--TCATCTTTAAAAATA----------ATCAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAATT-ATTTGAAA-TATA--ATAATAAAGAAAAACAACAAAAAAA-----CAAAAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTGTAAATT--AAACAAAAATACAA--CCATAGCCC----------------------------------TGGCCTTTAATTTTAATAAA-----------------------------------------------------------------------------------------------------------------------------------------TTCAGTCTGCC--AA--TAACAACAATTAATTATTCC------------A------------------A----------------------------------------------TTT--------------G--TTTTTTCCT--GTGT------AGC--AATTCA-ATTAACCAGATTTC--TTTTATTCTAT--GTG-------TATCTTTCCATGTG----------------CCTGCTA----CAAAAACAAAC---------------------------C---G---AC------GACATCGATAT------------TG------TTACGATAGAAAGTTACGTGTGAACTTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTTTTGTTTAATT-.....................................................1712.00200000011000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-GTTTTGAAGGAA.........................................1512.00200000020000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTTCGTGGCTTTTGT............................................................2011.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGCTTTTGTTTAATT-GTTTTGAAGGAA.........................................3011.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGTGAACTTCGTGGCTT................................................................2111.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTTCGTGGCTTTTGTTTAATT-.....................................................2611.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT-GTTTTGAAGGAAA---------------------------------------A1811.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGTGAACTTCGTGGCT.................................................................2011.00101000000000000000
...................................................................................................................................................................................................................................................................TATTCC------------A------------------A----------------------------------------------TTT--------------G--TTTTTTC..................................................................................................................................................................................................................................................................................................1911.00100001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTTTGTTTAATT-GTTTTGAAGGA..........................................2711.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGATAT------------TG------TTACGATA...........................................................................................1911.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAACTTCGTGGCTTTTGT............................................................2211.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATT-GTTTTGAAGGAAA---------------------------------------A1911.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTAATT-GTTTTGAAGGAA.........................................2311.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTACGTGTGAACTTCGTGGCT.................................................................2511.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTTCGTGGCTTTTGTTTAAT.......................................................2511.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT-GTTTTGAAGGAA.........................................1611.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTACGTGTGAA...........................................................................1611.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTACGTGTGAACTTCGTGGCT.................................................................2611.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAACAAAC---------------------------C---G---AC------GACATC............................................................................................................................2111.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACGTGTGAACTTCGT.....................................................................1911.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATT-GTTTTGAA.............................................1540.25100000001000000000
droSec2
TT-GTAAATT--AAAAAAA-ATGCAA--CCATAGCCC----------------------------------TGGCCTTTAATTTTAATAAT-----------------------------------------------------------------------------------------------------------------------------------------TTCAGTCTG--AAAA--TAACAAAAATTAATTATTCC------------A------------------A----------------------------------------------CTT--------------G--TTTTTTCCT--GTGT------AGC--AATTCA-ATTAACCAGATTTC--TTTTATTCTAT--GTG-------TATCTTTCCATGTG----------------CCTGCAA----CAAAAACAAAC---------------------------C---G---AC------GACATCGATAC------------TG------TTACGATAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATT-GTTTTGAAGGAAA---------------------------------------A2012.0020110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTTTA.........................................................2312.0020101
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTTTAATT-.....................................................2611.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATT-GTTTTGAAGGAAA---------------------------------------.2111.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATT-GTTTTGAAGGAAA---------------------------------------A2111.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGG...................................................................2011.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATT-GTTTTGAAGGAAA---------------------------------------A2211.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATT-GTTTTGAAGGA..........................................1911.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTTT..........................................................2211.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTAATT-GTTTTGAA.............................................1911.0010010
dm3
AATGTAAATT--TAAAAAAATTTCAA--CCATAGCCC----------------------------------TGGCCTTTAATTTTAATAAC-----------------------------------------------------------------------------------------------------------------------------------------GTCAGTTTGCA--AA--TAACCAAATT-AACTATTCC------------A------------------C----------------------------------------------CTT--------------G--TTTTTTCCT--GTGT------AGC--AATTCG-ATTAACCGGATTTC--TTATATTCTAT--GTG-------TATCTTTCCATGTG----------------CCTGCAA----CAAAAACAAAC---------------------------C---G---AC------GACATCGATAT------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAAAA-------------------------------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAACGTCGTGGCTTTTGT............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTAATT-GTTTTGAAGGAAA........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCGTGGCTTTTGTTTAATT-GTT..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTGAACGTCGTGGCTTT...............................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAT-------------------------TCACAGCCC----------------------------------TGGTGTTTTATTTTAAA--A-----------------------------------------------------------------------------------------------------------------------------------------ATCCGTTGGCAAAAA--TAACAAAATTAAAATATTTC------------A------------------A----------------------------------------------C-T--------------G--TTTTTCCCT--GTGT------AGC--ATTTTT-ATTAACCAGATTTC--TTTTATTCTAT--GTG-------TATATTTCCATGTG----------------CCTGCAA----CAAAAACAAAC---------------------------C---A---AC------GATATCGATAT------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTGAACGTCGTGGCT.................................................................2212.0021000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTACGTGTGAACGTCGTGGCC.................................................................2411.0010100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAATT-GTTTTGAAGGAAA---------------------------------------A2411.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTTTTGTTTAATT-GTTTTGAAG............................................2611.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTTTTGTTTAATT-GTTTTGAAGGA..........................................2811.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAACGTCGTGGCTTT...............................................................1911.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAATT-GTTTTGAAGGAAA---------------------------------------.2311.0010000100
..................................................................................................................................................................................................................................................................ATATTTC------------A------------------A----------------------------------------------C-T--------------G--TTTTTCCCT--GT............................................................................................................................................................................................................................................................................................2311.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATT-GTTTTGAAGGAAA---------------------------------------A2211.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTGAACGTCGTGGCTTTTGT............................................................2711.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------.2811.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAACGTCGTGGCTTTTGTT...........................................................2311.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTGTGAACGTCGTGGCT.................................................................2111.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATT-GTTTTGAAGGAAA---------------------------------------A1911.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACGTGTGAACGTCGTGGC..................................................................2211.0010000100
droYak3
TCTGTATAAT--AAATAA--ATACAT--TTATAGCCC----------------------------------TGGTGTTT-----TAAT--------------------------------------------------------------------------------------------------------------------------------------------ACCAATGTA--AAAA--CAACCAAATTGATATATCTA------------A------------------A----------------------------------------------CTT--------------G--TTTTTCCCT--GTGT------AGC--CATTTG-ATTAACCAGATTTC--TTTTATTCTAT--GTG-------TATCTTTCCATGTG----------------GCTGCTA----CAAAAACAAAC---------------------------C---A---AC------GACATCGATAT------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGTCGTGGCTTTTGT............................................................2013.00300000030000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGTGAACGTCGTGGCTTTTGT............................................................2513.00301100010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGTGAACGTCGTGGC..................................................................1913.00300300000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACGTGTGAACGTCGTGGCT.................................................................2312.00200100010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAACGTCGTGGCTTTT..............................................................2012.00200100010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGTGAACGTCGTGGCT.................................................................2012.00200100010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTGAACGTCGTGGCTT................................................................2312.00201100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTGAACGTCGTGG...................................................................2012.00200000020000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTGTTTAATT-GTTTTGAAGGA..........................................2511.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGTGAACGTCGTGGCC.................................................................2011.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATT-GTTTTGAAGGAAA---------------------------------------A2211.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGTGAACGTCGTGGCTTT...............................................................2111.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGTCGTGGCTTTT..............................................................1811.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTA----CAAAAACAAAC---------------------------C---A---AC------GA................................................................................................................................2411.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGTCGTGGCTTTTGTTTAATT-.....................................................2611.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTACGTGTGAACGT........................................................................1911.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAACGTCGTGGCTTTTGTTTAATT-.....................................................2811.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAACGTCGTGGCTTTTGTT...........................................................2211.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTACGTGTGAACGTCGTGGCT.................................................................2511.00100100000000
droEug1
TGTGAGACTT--AAGAAAAAAGATCT--TCACAGCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATTTCAGTCC--------------------------------------------TGACTAGTATCTTCGAATTTGTCTAAATATTTGTCTAAGATAAAACTTATATACTTTTCGATTTTAGATTAAGGTAGTAAA--CTTTTTTCT--GTGT------GGC--GATTTT-ATTAACAAAATTTC--TTTCATTCTAT--CTG---------TCTTTCCATGTA----------------CCTGCAA----CAA-----------------------------------C---A---AC------AACATCGATAT------------TG------TTACGTTAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
TATGCATTT---------------------CTAG-----------------CTAAAAAACAGGAATTACTTAAACCCTCTCTTTTGATACCGGAAGA-AAG-----------------------TGC-ATTTCCAATTTTCTATTTAAAATTGAA--AATAATCCAGAGCGCATA------------------------------------------------------ATAGTT--------ACTAATTAACATCATTCATTCCATATTGATA--------T-------------T----------------------------------------------CTT--------------G--TTTTTCTCT--GTGT------AACTAAATGTG-ATTAACCAGATTTC--TTCTATTCTAT--CTG-------TATCTTTCCATGCG----------------CCTGCGA----ACAACTACAAC---------------------------A---A---AC------AACATCGATAT------------CG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGAA------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTTGAAGAT-------------------TCACATCTG----------------------------------T----------------------------------------------------T-------------------------------------------------GAA--------------------------------------------------TTTCCG----------------------------------TTTCT--------------------------------------------------------------------CTTTTA--------------A--TTTTTTTCT--GTGT------AGC--CATTTA-ATTAGCCAGATTTC--ATTAATTCTTTTTCTG-------TATCTTTCCATGTG----------------CCTGCAA----ACGAATACCAC---------------------------A---A---AC------AACATCGATAT------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
TCTTTAATTC--AG--ATA--CATAGT-------------------------TAA-------------------------------------------------------------------------ATTAACAAATGTATGTTTTAAATTAAATAAATAATC-AGAA--TATAAA--------------------------------------------------TTTAGG----------------------------------TTTGTTATCTT------------------A----------------------------------------------ATG--------------ATTTTTTTTTCT--GTGT------AGC--GATTTG-ATTAACCAGATTTC--TTTTATTTCATCTCTG-------TCTCTTTCCATGCG----------------CCTGCAA----CAA--------------------------------------------C------AACATCAATAA------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGGAA---------------------------------------ASizeHit CountTotal NormTotal
No Reads
droRho1
TTTATGAATAATA---------ATA---------------ATTTTTATTACGCGGGAAAAC--------------------------------AAAGAAAATCGTAGGACAAATGAGGCATTTGG--------------------AT---------------------------GAAGAATACTTCTTAATGTGATACAAAATACAATTATAAATTTATGTCGTAAAAATTAATT--------TC--------------------GATTTGATAACTA------------------A----------------------------------------------CTG--------------A--TTTTTTCTT--GTGT------AAC--GATTTG-ATTAACCAGATTTC--TT---TTTTAT--CTG-------TATCTTTCCATGTG----------------TCTGCAA----CAA--------------------------------------------C------AACATCAATAA------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
TGTGAAACCG--AAAAAAA--CATAGTTTCAACTACG----------------------------------T----------------------------------------------------T--------------------AT---------------------------GAAGATTACGTTTCTACGGCTTACACAAT-----------------TTGTAAAGATCAGTCTT--AACA--TAACTAAACGG----CTTAA------------A------------------A----------------------------------------------ACT--------------G--ATTTTGTTT--GTGA------A-C--CATTTA-ATTAACCAGATTTC--ATAAATTTTAT--CTC-------TTTCTTTTTATGCA----------------CCTGCAA----CAA--------------------------------------------C------AAAATCGAAAA------------TG------TTACGATAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGGAAA---------------------------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-ATTAACAAG-TTTCTATTTTATTCTATCTTTA-------TATCTTTTCATGTG----------------CCTACTATAAACAA-----------------------------------C---A---AC------ATCGTCGATAA------------TG------T----GTAGAAAGTTACGTGTGAACGTCGTGGCTTTTGTTTAATT-GTTTTGAACGGAA---------------------------------------ASizeHit CountTotal NormTotal
No Reads
droAna3
TCAGTCAGT----------------------------C--GT----------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCC--AA--TAACCGACA-----------------------------------------------------------------------------------------------------------------------------------------TATT-ATAGCCAAGATTTC--TTAAATTCTATCTTTG-------TATCTTTCCATGTG----------------CCTGCTACCAACAA-----------------------------------C---A---ACAACAACAACATTGGA--------------TG------T----GTAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGAACA---------------------------------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTTTA.........................................................2313.003210000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAACGTCGTGGCTTTTGT............................................................2213.003010020
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGT............................................................2012.002000020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGGC..................................................................2112.002000020
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACGTCGTGGCTTTTGTTTAT........................................................2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGGCT.................................................................2211.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-----------------------------------C---A---ACAACAACAACATTGGA--------------TG------T----GT............................................................................................2711.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGC............................................................2011.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGTAAACGTCGTGGCTTTTGT............................................................2411.001000010
...........................................................................................................................................................................................................................................AGCC--AA--TAACCGACA-----------------------------------------------------------------------------------------------------------------------------------------TATT-ATAGC...................................................................................................................................................................................................................................................................2411.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTT..............................................................1811.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTGTAAACGTCGTGGCTTTT..............................................................2411.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTACGTGTAAACGTCGTGGCTTT...............................................................2811.001000010
droBip1
TCGAG-ATC----AGT-------------CAG--T--CCAGTCTTTA--------------------------------------AAA--------------------------------------------------------------------------------------------------------------------------------------------GC----CAGCC--AA--TAACCGACTT-AATAA-----------------------------------------------------------------------------------------------------------------------------------------AGCCAAGATTTC--TTAAATTCTATCTTTG-------TATCTTTCCATGTG----------------CCTGCTA----CCAAC--CAACAAACAACAACTACAACACCACCACCACCAACA---AA------AACAACGAT---------------G------T----GTAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAATT-GTTTTGAAGAACA---------------------------------------ASizeHit CountTotal NormTotal
No Reads
dp5
CTTTA-----------------------------------GTTTTTA---GCCAAGAAAAA--------------------------------AAAG-AAG--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------------------ATTTTG-ATTAACA--ATTTC--TTTAAATCGTT--CTG-------TATCTTTCCATGTG----------------TACGCCA----CCAC--------------------------------------AATCAC------GACAACGATTCCATCT---------------T----GTAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAGTT-ATTTTGAAGGAGAGA-------------------------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTT-ATTTTGAAGGAGAGA-------------------------------------.2114.0040100000003
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGT............................................................2013.0030200100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACGTCGTGGCTTTTGTTTAG........................................................2312.0020000000200
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGGC..................................................................2112.0020200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTAAACGTCGTGGCTT................................................................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTACGTGTAAACGTCGTGGC..................................................................2411.0010000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----CCAC--------------------------------------AATCAC------GACAACGATTC.......................................................................................................................2311.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGTT-ATTTTGAAGGAGAG.......................................2111.0010000000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCGTGGCTTTTGTTTAGTC-.....................................................2211.0010001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGGCTTTTGT............................................................2711.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTAAACGTCGTGGCT.................................................................1811.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGGCT.................................................................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTTAGTT-ATTTTGAA.............................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGTT-ATTTTGAAGGAGAGA-------------------------------------.2211.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTACGTGTAAACGTCGTGG...................................................................2311.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTT-ATTTTGAAGGAGAG.......................................2011.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTAGTT-ATTTTGAAGGAGAGA-------------------------------------.2611.0010000000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTACGTGTAAACGTCGTGGCTTT...............................................................2711.0010000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTTAGTT-ATTTTGAAGGAG.........................................2411.0010000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTGTAAACGTCGTGGCTTTTGT............................................................2611.0010000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTACGTGTAAACGTCGTGGC..................................................................2511.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCGTGGCTTTTGTTTAG........................................................2111.0010000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAGTT-ATTTTGAAGGAGAGA-------------------------------------.2311.0010000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAGTT-ATTTTGAAGGA..........................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAACGTCGTGGCTTTTGTTTAGC.......................................................2711.0010010000000
droPer2
CTTTA-----------------------------------GTTTTTA---GCCAAGAAAAA--------------------------------AAGA-AAG--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------------------ATTTTGAATTAA-CAACTTTC--TTTAAATCGTT--CTG-------TATCTTTCCATGTG----------------TACGCCA----CCAC--------------------------------------AATCAC------GACAACGATTCCATCT---------------T----GTAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAGTT-ATTTTGAAGGAGAGA-------------------------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTTTAGT.......................................................2514.004400000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGT............................................................2013.003001002
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTTTA.........................................................2313.003300000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGTAAACGTCGTGGC..................................................................1812.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTCGTGGCTTTTGT............................................................1812.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTTTAGTT-.....................................................2612.002200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGTAAACGTCGTGGCTTTTGT............................................................2512.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAACGTCGTGGCTTTTGT............................................................2212.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTT-ATTTTGAAGGAGA........................................1912.002000002
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGGCTTT...............................................................2412.002000002
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGGCT.................................................................2212.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTCGTGGCTTTTGTTTAGTT-.....................................................2412.002200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTAGTT-ATTTTGAAGG...........................................2111.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTTAGTT-ATTTTGA..............................................1911.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTAAACGTCGTGGCTTTTGTTT..........................................................2511.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTTTGTTTAGTT-ATTTTGAAGG...........................................2611.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTCGTGGCTTTTGTTTAGT.......................................................2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTG.............................................................1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGTT-ATTTTGAAGGAGAGA-------------------------------------.2211.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAGTT-ATTTTGAAGGA..........................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTTTAGTT-ATT..................................................2911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTGTAAACGTCGTGGC..................................................................2011.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTAGTT-ATTTTGAAGGAGAGA-------------------------------------.2611.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGGCTTTTGTTTAGC.......................................................1920.501100000
droWil2
TTACT------------------------CAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATA-CATCTTTA-------TTTTTTTTCATGTG----------------CCGCCTT----TAA--------------------------------------------C------AAC--CGAT--------TAA---TCAACCAAT----TTAGAAAGTTACGTGTGAACGTCTTGGCTTTTGTTTAAACAATTTTGAAAACCAGCATACA-----ACACCAACAAAAAAATCTAGCAACTCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAATTTTGAAAACCAGCATA...................................2312.00200020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTGAACGTCTTGGC..................................................................2112.00200110
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAACCAGCATACA-----ACACC.......................2211.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATTTTGAAAACCAGC......................................1911.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAACGTCTTGGCTTTTGTT...........................................................2211.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACCAGCATACA-----ACACCAAC....................2311.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTACGTGTGAACGTCT......................................................................2111.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAACGTCTTGGCTTTTGT............................................................2211.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACAATTTTGAAAACCAGC......................................2111.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGCATACA-----ACACCAACAAA.................2311.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGTCTTGGCTTTTGT............................................................2011.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTGAACGTCTTGGCT.................................................................2211.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGTCTTGGCTTTTGTTT..........................................................2211.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAAAAAATCTAGCAA.....1911.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGTGAACGTCTTGGCT.................................................................2011.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTGTGAACGTCTTGGCT.................................................................2111.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGTGAACGTCTTGGC..................................................................1911.00100010
droVir3
TTTAC-----------------------TTTTAACTG----------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG--------------A--TATTT--CTTTTTACTGATCTGAT--GATTTG---------CATTTT--T----TTCTTT--ACGCATAAAATATTTTTCATGACT----------------TCCGCTA----CAA-------C---------------------------C---G---AC------AAC-TGGACAT---CTTTAATAATA----------ATTAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAATT-ATTTTGAAAAATA--ATAAAAAAAAAAAAAAAATATAAAT-----AAAAAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTGTAAACGTCGTGGC..................................................................2012.002000000000000000000000000000000000000000000000000000000000000020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTACGTGTAAACGTCGTGGCT.................................................................2412.002000100000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACGTGTAAACGTCGTGGCT.................................................................2312.002000000000000000000100000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGGCTTTTGT............................................................2712.002000000000000000000000000000000000020000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGGCT.................................................................2212.002001100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGGCTT................................................................2312.002001000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAACGTCGTGGCTTTTGT............................................................2212.002001000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTTTAATT-AT...................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCATGACT----------------TCCGCTA----CA......................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTT...........................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTAATT-ATTTTGAAAAA..........................................2011.001000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACGTGTAAACGTCGT.....................................................................1911.001000010000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGTAAACGTCGTGGC..................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTACGTGTAAACGTCGTGGCT.................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGTAAACGTCGTGGCTTTTGT............................................................2511.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAACGTCGTGGCTT................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTAAACGTCGTGGCTTT...............................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGTAAACGTCGTGGCTTTTGTTTAATT-ATTTTGAAAAATA--ATAA..................................4711.001000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCGTGGCTTTTGTTT..........................................................1911.001000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTCGTGGCTTTTGT............................................................1811.001000000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTACGTGTAAACGTCGTGGC..................................................................2411.001000000000000000000000000000000000000000000000000000000000000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTT..............................................................1811.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTACGTGTAAACGTCGTGGCTC................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTAATT-ATTTTGAAAAATA--......................................2411.001000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----CAA-------C---------------------------C---G---AC------AAC-TGGACAT---CTTT................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGT............................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACT----------------TCCGCTA----CAA-------C---------------------------C---G---AC------AAC-TGGAC.........................................................................................................................2711.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------AAC-TGGACAT---CTTT................................................................................................................1511.001000000000000000000000000000000000000000000000000100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTCGTGGCTTTTGTTTAAT.......................................................2311.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACGTCGTGGCTTTTGTT...........................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGTAAACGTCGTGGCT.................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AGTTA--ATT--A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------GATTTAGT-----TTTAACTG---------------------------------------------------------TTG--------------G--TATTT--GTT-ATACT----------GATCTG-ATTTAC---AT-----TTTTTTTCTTT--ACACATAAAA--------ACAACTTCCGCATATACCGACACATGG--------------------------------------------------ACAT------CGCATCGTTGT---------TAATA----------ATTAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAATT-ATTTTGAATAATA---------------------------------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTTT..........................................................2213.003100002
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTT...........................................................2112.002100001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGGCTTTTGT............................................................2711.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGCTTTTGTTTAATT-ATT..................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAACGTCGTGGCTTTTGTTTA.........................................................2511.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGTAAACGTCGTGGCTTTTGT............................................................2411.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTTTA.........................................................2311.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGGC..................................................................2111.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAACGTCGTGGCTTTT..............................................................2011.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGTCGTGGCTTTTGTTTAATT-.....................................................2611.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGTAAACGTCGTGGCTTTTGTT...........................................................2811.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAACGTCGTGGCTTTTGTT...........................................................2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAATT-ATTTTGAATAATA---------------------------------------.2311.001100000
droGri2
AATGTGGCC---------------------------A----------------------------------GAG-----------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTT--------AC--------------------GATTTAGT-----TATAA-------------C----------------------------------------------TTG--------------G--TATTTCTTT--ATGCT-----GAT--AATTTG-AT--------ATTT--TTTCATTGCATGTTTG-------TATTTTTCATCACTTCCGCAACAACTGACGCCTGG------------------------------------------------------------------GG--TCATCTTTAAAAATA----------ATCAGAAAGTTACGTGTAAACGTCGTGGCTTTTGTTTAATT-ATTTGAAA-TATA--ATAATAAAGAAAAACAACAAAAAAA-----CAAAAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGTAAACGTCGTGGCT.................................................................2011.00101
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCGTGGCTTTTGTTT..........................................................1911.00110

Generated: 05/18/2015 at 11:46 PM