ID:

dsi_10651

Coordinate:

3r:17170510-17170659 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-31.3	-31.1	-31.0

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
Gypsy8-I_Dpse-int	LTR	Gypsy	-
(CTG)n	Simple_repeat	Simple_repeat	+

mature

star

Sense Strand Reads

CTGACTGGTTCTGTGCCAGTTTAACGCGAGCCCTTGCCTGGACAGCACGGGTATACAGTAGCAGCAGCATCCGCAGCAGCAGTAGCCGCAGCAGCAGCATCAGCAAGCAGCGCCCGCAGCAGCACACACACGCACAACGGCTGCACACGAAAAAAACGCACACACGCACACACTCCAGTGAGTTGCCATACGGCGCAGCGAAATGCAAAAACTAGGAAAATCGCAAAAGAAAAAGTCGAGAAAAACGGAA ************************************************.......((.((.((.((...(((.((.((....((.((....)).))....))..)).)))...)).)).))))..............(((((.............((......))....((((....)))).(((....)))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553487 NRT_0-2 hours eggs	O002 Head	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	M025 embryo	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
................CAGTTTAACGCGAGCCCT........................................................................................................................................................................................................................	18	0	1	7.00	7	7	0	0	0	0	0	0	0	0
................CAGTTTAACGCGAGCCCC........................................................................................................................................................................................................................	18	1	1	3.00	3	3	0	0	0	0	0	0	0	0
..............GCCAGTTTAACGCGAGCCC.........................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0
..........................................................................AGCAGCAGTAGCCGCAGC..............................................................................................................................................................	18	0	2	1.00	2	0	0	2	0	0	0	0	0	0
...............................CCTTGCCTGGAAAGGTCGGGT......................................................................................................................................................................................................	21	3	2	1.00	2	0	2	0	0	0	0	0	0	0
................................CTTGCCTGGAAAGGTCGGGTA.....................................................................................................................................................................................................	21	3	3	1.00	3	0	2	0	0	1	0	0	0	0
.......................................................................................................................CAGCACACACCCCCACAACGGC.............................................................................................................	22	2	1	1.00	1	0	0	0	1	0	0	0	0	0
..........CTGTGCCAGTTTAACGCGAGCCCT........................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.........................GCGAGCCCTTGCCTGGACAGCAC..........................................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	0	0	1	0	0	0
............................................................GCAGCAGCATCCGCAGCAGCAGTAGC....................................................................................................................................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...............................CCTTGCCTGGAAAGGTCGGG.......................................................................................................................................................................................................	20	3	4	0.50	2	0	0	0	0	2	0	0	0	0
................................CTTGCCTGGAAAGGTCGGGT......................................................................................................................................................................................................	20	3	5	0.40	2	0	1	0	0	0	0	0	1	0
..............................CCCTTGCCTGGAAAGGTCGG........................................................................................................................................................................................................	20	3	3	0.33	1	0	1	0	0	0	0	0	0	0
..........................................................................................................................................GGCAGCACACGAAAACAACG............................................................................................	20	2	3	0.33	1	0	0	0	0	0	0	1	0	0
.............................GCCCTTGCCTGGAAAGGTCGG........................................................................................................................................................................................................	21	3	3	0.33	1	0	1	0	0	0	0	0	0	0
................................CTTGCCTGGAAAGGTCGGG.......................................................................................................................................................................................................	19	3	15	0.20	3	0	3	0	0	0	0	0	0	0
.................................TTGCCTGGAAAGGTCGGGTA.....................................................................................................................................................................................................	20	3	5	0.20	1	0	0	0	0	1	0	0	0	0
..............................CCCTTGCCTGGAAAG.............................................................................................................................................................................................................	15	1	9	0.11	1	0	1	0	0	0	0	0	0	0
......................................................................................CGCAGCAGCAGCATCA....................................................................................................................................................	16	0	20	0.05	1	0	0	0	0	0	0	0	0	1
..............................CACCTGCCTGGACAGCA...........................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	1

Anti-sense strand reads

GACTGACCAAGACACGGTCAAATTGCGCTCGGGAACGGACCTGTCGTGCCCATATGTCATCGTCGTCGTAGGCGTCGTCGTCATCGGCGTCGTCGTCGTAGTCGTTCGTCGCGGGCGTCGTCGTGTGTGTGCGTGTTGCCGACGTGTGCTTTTTTTGCGTGTGTGCGTGTGTGAGGTCACTCAACGGTATGCCGCGTCGCTTTACGTTTTTGATCCTTTTAGCGTTTTCTTTTTCAGCTCTTTTTGCCTT ************************************************.......((.((.((.((...(((.((.((....((.((....)).))....))..)).)))...)).)).))))..............(((((.............((......))....((((....)))).(((....)))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries
......................................................................................................................CGTCGTGTGTGTGCGT....................................................................................................................	16	0	4	0.25	1	1	0	0
.........................................................................................................................................................................................GGTATGACGCGGCGCTTTA..............................................	19	2	5	0.20	1	0	1	0
..................................................CATATGTCATCGGCG.........................................................................................................................................................................................	15	1	9	0.11	1	0	1	0
....GACCCAGGCACGGTCAA.....................................................................................................................................................................................................................................	17	2	13	0.08	1	0	0	1
........................................................................................................TTCGTCGAGGGCGTCG..................................................................................................................................	16	1	17	0.06	1	1	0	0
..................................................................................................................................................TGCTTTTTTTGCCTG.........................................................................................	15	1	20	0.05	1	0	1	0
..............................................................................................................................................................GTGTGTGCGTGTGTGA............................................................................	16	0	20	0.05	1	1	0	0
..........................................................................................CGTCGTCGTAGTCGTT................................................................................................................................................	16	0	20	0.05	1	0	0	1
.............................................................GTCGTCGAAGGCGTCG.............................................................................................................................................................................	16	1	20	0.05	1	1	0	0

Generated: 04/23/2015 at 01:55 PM