ID:

dsi_10644

 Coordinate:

3r:5846075-5846475 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-92.1 -92.1 -92.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCCCCCGCACTCCAGTCTCATGCAACAGCAGCACCAGCAGCACTTGAATGGTGCGGATATTAATGGCAGTCACTGTCACCTTTTGTAGCCGGCTCAATTTTCCGACCACCTCGGTTCAGCTTGTGTTGAGTTTGGTTTTCGTTTGCGGTGCCTACTTTAGGGCACTGGATTTTGATTTCATTTTCGAATTGCTTGTGTTGTTTGTGTTGATGTCGCTTTCTCTGTACAACCTTGTTGGAATACAAGTTTCCACTATAAATACTAATCTCGATTATTTCTCTTGCTCTGCTCTCTTTCCACTGCCCCAAATCGCCATGCAGATCTTGCCTAGAATGTGTTGGATTAAAGCGGTAATGCAACGATTAGTGTTGTCCTCTTACCATTTCAGAGAATTGAAAATATACCAATATGCCAGATTTTCTAATCGCGATTTTGTATCTATTATCCGCAGAGAACTCAAGCGGCCTGGTGACCGTAATCACAGAGCAGGAATTGGAGTGC
**************************************************.((((((((.((.((((((...))))))........((((((((((((...((((.....))))..........)))))).))))))........((((((((......))))))))((...((((.(((....(((((.((....)).)))))...))).))))...))...((((((..(((((((((.......)))))..........(((((.((((...((((...(((((((...........................)))))....))..))))...)))))))))(((.(((((.((((((.....))))))....))))).))).((((((((....((((....))))....))))))))....))))..)))))).)).)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCAAGCGGCCTGGTGAC............................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTAATAAAAGAGCAGGAATTGGA.... 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAGAACTCAAGCGGCCTGGTGACCGT......................... 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GATTTCATTTTCGAATTG...................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................TAGAGCACTGGATTGTGAT..................................................................................................................................................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTAATCACAGAGCAGGAATTG...... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................ATGCAGATATTGCCTAGAATGTGTTGG................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................GGCACTGGATTTTGATTCC.................................................................................................................................................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................GGCACCGGATTTTGAT..................................................................................................................................................................................................................................................................................................................................... 16 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................TACAGCTTGTGTTGA.................................................................................................................................................................................................................................................................................................................................................................................... 15 1 14 0.57 8 0 8 0 0 0 0 0 0 0
...........................................................................................................................................................GTTAAGGCACTGGATTTTG....................................................................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................AATCTTCCGATCACCTCGG................................................................................................................................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................AAGGCACCGGATTTTGATTCC.................................................................................................................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................GGCACTGGTTTTTGA...................................................................................................................................................................................................................................................................................................................................... 15 1 9 0.22 2 0 0 0 0 0 0 0 2 0
..................................................................................................................................................................CACTGGATTGTGATTCCA................................................................................................................................................................................................................................................................................................................................. 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAGGCACCGGATTTTGA...................................................................................................................................................................................................................................................................................................................................... 17 2 10 0.20 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................ACTGGATTGTGATTCCA................................................................................................................................................................................................................................................................................................................................. 17 2 13 0.15 2 1 1 0 0 0 0 0 0 0
...................................................................................................................ACAGCTTGTGTTGAG................................................................................................................................................................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0
.......................................GTAGTTGAGTGGTGCGGATATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 22 3 7 0.14 1 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................TACAACCTAGTTGGA...................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 1 0 0 0
............................................TGAATGGTGCGGGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................AAGCGGTAAGGCACCGA........................................................................................................................................... 17 2 9 0.11 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................AAGGCACCGGATTTTGATTC................................................................................................................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................AAGCGGTAAGGCACCGTTT......................................................................................................................................... 19 3 12 0.08 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATACAACCTAGTTGGAATG................................................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0
...........................................TTGAGTGGTGCGGATTTAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 1 0 0
...................................................................................................................TCAGCTTGTGTCGAGAT................................................................................................................................................................................................................................................................................................................................................................................. 17 2 13 0.08 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................GCACTGGATTGTGAT..................................................................................................................................................................................................................................................................................................................................... 15 1 14 0.07 1 1 0 0 0 0 0 0 0 0
...........................................TTGAGTGGTGCGGATTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 2 16 0.06 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................CCTGGATTGTGATTTCA................................................................................................................................................................................................................................................................................................................................. 17 2 16 0.06 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................GAGCACTGGATTGTGATTC................................................................................................................................................................................................................................................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................CAAGGCACCGGATTTTGAT..................................................................................................................................................................................................................................................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................TAAGGCACCGGATTCTGAT..................................................................................................................................................................................................................................................................................................................................... 19 3 19 0.05 1 0 1 0 0 0 0 0 0 0
..................................................................................................................TGCAGCTTGTGTTGA.................................................................................................................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................ACCTTGTTGGAGAACA................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................TGTGTTGGAATAGAGC........................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................AAGGCACCGGATTTTG....................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CGGGGGCGTGAGGTCAGAGTACGTTGTCGTCGTGGTCGTCGTGAACTTACCACGCCTATAATTACCGTCAGTGACAGTGGAAAACATCGGCCGAGTTAAAAGGCTGGTGGAGCCAAGTCGAACACAACTCAAACCAAAAGCAAACGCCACGGATGAAATCCCGTGACCTAAAACTAAAGTAAAAGCTTAACGAACACAACAAACACAACTACAGCGAAAGAGACATGTTGGAACAACCTTATGTTCAAAGGTGATATTTATGATTAGAGCTAATAAAGAGAACGAGACGAGAGAAAGGTGACGGGGTTTAGCGGTACGTCTAGAACGGATCTTACACAACCTAATTTCGCCATTACGTTGCTAATCACAACAGGAGAATGGTAAAGTCTCTTAACTTTTATATGGTTATACGGTCTAAAAGATTAGCGCTAAAACATAGATAATAGGCGTCTCTTGAGTTCGCCGGACCACTGGCATTAGTGTCTCGTCCTTAACCTCACG
**************************************************.((((((((.((.((((((...))))))........((((((((((((...((((.....))))..........)))))).))))))........((((((((......))))))))((...((((.(((....(((((.((....)).)))))...))).))))...))...((((((..(((((((((.......)))))..........(((((.((((...((((...(((((((...........................)))))....))..))))...)))))))))(((.(((((.((((((.....))))))....))))).))).((((((((....((((....))))....))))))))....))))..)))))).)).)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M025
embryo
 O002
Head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTCTTGAGTTCGCCGGAC................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTCTCTTGAGTTCGC...................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGCTAAAACATAGATAAT......................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTGTTGGAACAACCCTATCTT................................................................................................................................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................CCCTTGACCTAAAACTCAGGT................................................................................................................................................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGATTAGCGCTA...................................................................... 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GAAAGAGAAATGTTGGGA............................................................................................................................................................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0
.CGGGGCGTGATGTCAGAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGTCGCGAGCTTAACC..... 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................CCCTTGACCTAAAACTCAGG.................................................................................................................................................................................................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................CCCTTGACCTAAAACTCA.................................................................................................................................................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 1 0 0 0
...........GGTAAGAGTACGTTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATAGGCGTCT................................................. 15 1 19 0.05 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................................................................................................................CAGGAGAATTGGAAGGTC................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:5846025-5846525 - dsi_10644 GCCCCCGCACTCCAGTCTCATGCAACAG---------------------------CAGCACCAGCAGCACTTGAATGGTGCGGATATTAATGG--CAG---TCAC---TGTCACCTTTTGTAGCCGGCTCAATTTTCCGACCACC--------TCGGTTCAGCTTGTGTTGAGTTTGGTTTTCGT-TTGCGGTGCCTACTTTAGGGCACTGGATT------TTGATTTCATTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATTGCT----------------------------TGTGTTGTT-------------TGTGT-TGATGTCGCT--TT-CTCTGTACAACCTTGTTGGAA----TACA---AGTTTCC----------ACTATAAATACTAATCTCGAT----TATTTCTCTTG-CTCTGC-TCTCT------TTCCACTGCCCCAAAT--CGCC-ATGCAGATCTTGCCTAGAATGTGT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTAGTGTTGTCCTCTT---ACCATTTCAGAGAAT-TGAA----------------------------------------------------------AAT-------------------------------A-T-------------------------ACCA--ATATGC--CAGATTT-TCTAATC--------------------------GCGATTTTGTAT-----------CTATTA----TCCGCAGAGAACTCAAGCGGCCTGGTGACCGTAATCACAGAGCAGGAATTGGAGTGC
droSec2 scaffold_25:356568-357068 - GCCCCCGCACTCCAGTCTCATGCAACAG---------------------------CAGCACCAGCAGCACTTGAATGGTGCGGATATTAATGG--CAG---TCAC---TGTCACCTTTTGTAGCCGGCTCAATTTTCCGACCACC--------TCTGTTCAGCTTGTGTTGAGTTTGGTTTTCGT-TTGCGGTGCCTACTTTAGGGCACTGGATT------TTGATTTCATTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATTGCT----------------------------TGTGTTGTT-------------TGTGT-TGATGTCGCT--TT-CTCTGTACAACCTTATTGGAA----TGCA---AGTTTCC----------ACTATAAATACTAATCTCGAT----TATTTCTCTTG-CTCTGC-TCTCT------TTCCACTACCCCAAAT--CGCC-ATGCAGATCTTGCCTAGAATGTGT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTAGTGTTGTCATCTT---ACCATTTCAGAGAAT-TAAA----------------------------------------------------------AAT-------------------------------A-T-------------------------ACTT--ATATGC--CAGATTT-TCTAATC--------------------------GCGATTTTGTAT-----------CTATTA----TCCGCAGAGAACTCAAGCGGCCTGGTGACCGTAATCACAGAGCAGGAATTGGAGTGC
dm3 chr3R:15419771-15420271 + GCCCCCGCACTCCAGTCTGATGCAACAG---------------------------CAGCACCAGCAGCACTTGAATGGTGCGGATATTAATGG--CAG---TCAC---TGTCACCTTTTGTACCCGGCTCAATTTTCCGACCACC--------TCTGTTCAGCTTGTGTTGAGTTTGGTTTTCGT-TTGCGGTGTCTACTTTAGGGCACTGGATT------TTGATTTCATTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATTGCT----------------------------TGTGTTGTC-------------TGTGT-TGATGTCGCT--TA-CCCTGTACAACCTTGTTGCAA----TACA---AGTTTCC----------ACTATTAATACTAATCAAGAT----TATTTCTCTTG-CTCTGC-TCTCT------TTCCACTGCCACAAAT--CGCC-ATGCAGATCTTGCCTAGAATGTGT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTAGTGTTGTCATCTT---ACCATTTCAGAGAGT-TGAA----------------------------------------------------------AAT-------------------------------A-T-------------------------ACAA--ATATGC--CAGATTT-TCTAATC--------------------------GCGATTTTATGT-----------CTATTA----TCCGCAGAGAACTCAAGTGGCCTAGTGACCGTAATCACAGAGCAGGAATTGGAGAGC
droEre2 scaffold_4770:6220756-6221271 - GCCCCCGCACTCCAGTCTCATGCAACAGCAGCAA---------CAGCAGCACCAGCAGCACCAGCAGCACTTGAATGGTGCGGATATTAATGG--CAG---TCAC---TGTCACCTT-TGTAGCCGGCTCAATTTTCCGACCACC--------TCTGTGGAGCTTGTGTTCAGTTTGGTTTTCGT-TTGCGGTGCCTACTTTCGGGCGCTGGATT------TTGATTTCATTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATTGCT----------------------------TGTGTTGTT-------------TGTGT-TGATGTCGTT--TT-CCCTGTACATTTCTGTTGGAA----CCGA---ATTTTGC----------CCTACAATTACTAATCTCCTT----TATTTCTCT-G-CTCTGC-TCTCT------TTCTACTGTCCCAAAT--CGCC-ATGCAGATCTTGCCTAGAATGCGT----TGGAT------------TG-AAG------------CGGTAATGC-------AACGATTTGTGTCGTCACCTT---GCCATTTCAGAGAAT-TGAA----------------------------------------------------------AAT-------------------------------A-T-------------------------GCCA--GCATA---CAGATTT-GCTAATT--------------------------GAAATTCTATCT-----------TTGTTG----TCCACAGATAACTCAAGCGGACTGGTGACCGTCATCACAGAGCAGGAATTGGAGAGC
droYak3 3R:4171855-4172374 + GCCCCCGCACTCCAGCCTTATGCAACAGCAGCAA---------CAGCAGCAACAGCAGCACCAGCAGCACTTGAATGGTGCGGATATTAATGG--CAG---TCAC---TGTCACCTTTTGTAGCCGGCTCAATTTTCCGGCCACC--------TCTGTGGAGCTTGTGTTGAGTTTGGTTTTCGT-TTGCGGTGCCTACTTTAGGGCGCTGGATT------TTGATTTCATTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATTGCT----------------------------TGTGTTGTT-------------TGTGT-TGATGTCGCT--TT-CTCTATACAATCTTGTTGGAA----TGGA---AGTTTCC----------ACTATAAATACTAATCTCGTT----TATTTCTCTTG-CTCTGC-TCTCT------TTCTACTGCCCAAAAT--CGCC-ATGCAGATCTTGCCTAGAATGAGT----TGGAA------------TA-AAG------------CGGTAATGC-------AACGATTTGTGTCGTCACCTT---ACCATTTCAGGAACT-GGAA----------------------------------------------------------AAT-------------------------------A-T------------------------TACCA--GTATAA--CAGATTT-TCTAATC--------------------------GGAATTTTACCT-----------CTATTA----TCGACAGATAACTCAAGTGGACTGGTGACCGTAATCACAGAGCAGGAATTGGAGAGC
droEug1 scf7180000409804:1706811-1707296 + ACCCCCGCACTCCAGCCTCATGCAGCAGCAACAT---------CAACAGCA---TCAGCATCAGCAGCACTTGAATGGTGCGGAAATTGATGG--CAG---TCAC---TGTCACCTTTCGTAGCTTGCTCAATTTTACTACCACC--------TCTGTTGAGTTT-----------GTGTTTCAT-TTGGGGTGCCTACTTTCAGGCGCTGGATT------TTAATTTCATTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATCTCT----------------------------TGTGTTGTT-------------TGTGTTTCATGTTGTT--T-CCT-T--------------GGTCTTT----ATAC-------------C-CTCTACAAATACTAATCTCGAT----TATTTCTCTTG-CTCTGC-TCTTT------TTCCACTGCTCCT------GAC-CAGCAGATCTTGCCTAGAATGTAT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTTATGTTGTCACTTC---ACCATTTCAGGAAAT-CAGA---------------------------------------------------A------AGA-------------------------------A-T-------------------------GTTG--GTAAAC--GAGATT--TCTAATC--------------------------GGGATTTCATTT-----------CTATTT----TCCACAGAAAACTCTAGTGGCCTGGTGACCGCCATTACCGAGCAGGAATTGGAGAGC
droBia1 scf7180000302402:1193779-1194258 + GCCCCCGCACTCCAGTCTCATGCAGCAG---------------------------CAGCATCAGCAGCACTTGAATGGTGCGGAAATGAATGG--CAG---TCAC---TGTCACCTTTTGTAGCCTGCTCAATTTTATGACCACT--------TCTGTGGAGCCCGTGTTGAGTCTGTGTTTCGT-TTGCGGTGCCTACTTTCGGGCACTGCATT------TTATTTTCGGTTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CATCTCT----------------------------TGTGTTGTT-------------TGTGT-TGATGTTGTC--T-CTC-T--------------GGT-TTT----ATAC-----C----------CCTATAAATACTAATCTCGAT----TATTTCTCTTG-C-CTGC-TCTCG------TTCCACTGCCCCAAAC--CGAA-CTGCAGATCTTGCCTAGATTGCGT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTTGTGTTGTCACTTC---ACCATTTCAGCGAAT-CGAA-------------------------------------------ACAG-----------------------------------------------C------GA-----------AC----------TTATGT--CAGATT--CCTAATC--------------------------CGGATT-TATTT-----------CCCCTT----TCCGCAGAGAACTCCAGTGGCCTGGTGACCGTCATTACCGAGCAGGAGCTGGAGAGC
droTak1 scf7180000415710:412626-413107 - ACCCCCGCACTCCAGCCTCATGCAGCAG---------------------------CAGCATCAGCAGCACTTGAATGGTGCGGAAATTGATGG--CAC---TCAC---TGTCACCTTTTGTAGCCTGCTCAATTTTATGGCCACC--------TCTGTTGAGCT-----TCAGTTTGTGTTTCGT-TTGCGGTGCCTACATTCGGGCGCTGGATT------TTATTTTCGCTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------AATCTCC----------------------------TCTGTTGTT-------------TGTGT-TGATGTTGTC--T-CCT-T--------------GGTTTTT----ACAC-------------C-CTCTATAAATACTAATCTCGAA----TATTTCTCTTG-CTCTGC-TCTCG------TTCCACTGCCCCATGCC-CGCC-AAGCAGATCTTGCCTAGATTGTGT----TGGAC------------TA-AAG------------CGGTAATGC-------AACGATTTGTGTTGTCACCTTTTCACCATTTCAGCAAAT-CGAA----------------------------------------------------TGTTAAAAT-------------------------------A-T-------------------------TCAA----------AAAATT--TCTAATC--------------------------TGGATT-TATTT-----------CCATTT----TCCACAGAGAACTCTAGTGGCCTGGTGACCATCATTACCGAGCAGGAACTGGAGAGC
droEle1 scf7180000486474:40311-40824 + GCCCCCGCACTCCAGTCTCATGCAACAGCAACA---GCAGCATCAGCAGCAGCAGCATCATCAGCAGCACTTGAATGGTGCGGATACTTCTGG--CAGCCGCCAC---TGTCGCCTTTTGTAGCCTGTCCAATTTTGTGACCGCC--------TCTGTTGAGTTT-----------GTGTTTCGTTTTGCGGTGCCTACTTTCAGGCGCTGGATTATATTTTTATTTTCATTTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------ACTCTCTTGTGC-----------------------TGTGTTGTT-------------TGTGT-TTATGTTGTT--T-CCT-T--------------GGT-TGT----ACAA--CTGT---AT--C---CTCTAAATACTAATCTCGAT----TATTTCTCTTG-CTCTGC-TCTCG------TTCCACTGCCCC------CGCC-CTGCAGATCTTGCCTAGAATGTGT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTTGTGTTGTCACTTT---TCCATTTCAGGAAAT-CGAA----------------------------------------------------------AAC-------------------------------A-C-------------------------TCTT--TTTTTCCAGAGATTTATCTAATC--------------------------GGAATG-TATTT-----------CTGTTT----TCTACAGAGAACTCTAGTGGCCTGGTGACCGTCATTACCGAGCAGGAAATGGAGAGC
droRho1 scf7180000779431:18688-19155 - GCCCCCGCACTCCAGTCTCATGCAGCAG---------------------------CAGCATCAGCAGCACTTGAATGGTGCGGATATT-CTGG--CAG---TCAC---TGTCGCCTTTCCTAGAC-GCTCAATTTTGTGACCGCC--------TCTGTGGAATTT-----------GTGTTTCGT-TTGCGGTGCCTACTTTCGGGCGCTGGATT------TTATTTTCAATTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------ACTCTCT----------------------------TGTGTTGTT-------------TGTGT-TGATGTTGTTCTT-CCT-T--------------GGT-TCT----ACAT--CTAT---AT--C---CTCTGAATACTAATATCGAT----AATTTCTCTTG-CTCTGC-TCTCG------TTTCACTGCTCC------CGCC-CAGCAGATCTTGCCTAGAATGTGT----TGGAT------------TAAAAG------------CGGTAATGC-------AACGATTTGTGTTGTCACTTC----CAATTTCAGCAAAT-GGAA----------------------------------------------------------ACA-------------------------------A-T-------------------------T-----TTATGC--CAGATT--TCTAAAC--------------------------GGAGTG-TATTT-----------CTGTTT----TCCACAGAGAACTCTAGTGGCCTGGTGACGGTCATTACCGAGCAGGAGTTGGAGAGC
droFic1 scf7180000454126:412383-412887 + GCCCCCGCACTCTAGTCTCATGCAGCAGCAGCAACAACAGCAGCAACATCAGCTGCAGCATCAGCAGCACTTGAATGGTGCGGAAATTGCCGA--CAG---TCAA---TGTCACCTTTTGTAGCCTGCTCAATTTTCTGACCGCC--------TCTGTTGAGTTT-----------GTGTTTCGT-TTGCGATGCCTACTTTCAGGCACCGGATT------TTATTTTCGATTC----GATTTT--------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------GATCCGGGTCG-------AATCTCT----------------------------TTTGTTGTT-------------TGTGT-TGATGTTGTC--TTCTT-T--------------GGT-TCT----ATAC-------------C-CTCTATAAGTACTAATCTCGAT----TATTTCTCTTG-CTCTGC-TCTCG------TTCCACTGCCCCT--C--CGTA-TTGCAGATCTTGCCTAGAATGTGT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTCGTGTTGTCACTTT---ACTATTTCAGCAAAT-CAAG------------------------------------------------------T-CAAAC-------------------------------A-T-----------TCAA------------------------CATATT--TGTAACC--------------------------GGAATT-TGTCT-----------C---------TCCGCAGAGAACTCTAGTGGATTGGTGACCGTCATCACCGAACAGGAAATGGAGAGC
droKik1 scf7180000302666:200625-200929 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTT------------TTA-GTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------ATTCCCT----------------------------TGTGTTGCT-------------TGCGT-CAATGTTGTG----CCT-T--------------GGT-TGT----ATAT---TCT---AT--C---TTCGAAATACTAATCTCAAT----TATTTCTCTTG-CTCTGCCTCTTA------TTCCTCCGCCC-------CGCC-CCGCAGATCTTGCCTAGAAAGTGT----TGGAT------------TA-AAG------------CGGTAATGC-------AAACATTTGTGTTGTCACTTG---ACT-TTACT-CAAATCGGAA----------------------------------------------------------AAG-------------------------------T-T-------------------------T-----TTAAAA--TAGATT--TATAATC--------------------------AGTATT-TTCTT-----------CAATTT----TCTGTAGAGAACGTTAGCGGCCTGGTGACCATCATAACCGAGCAGGAAATGGAGAGC
droAna3 scaffold_13340:14980741-14981358 - GCCGCCACACTCCAGTCTATTTCAGCAT---------------------------CAACAGCAGCAGCATTTGAACGGTGCGGAAATTGCTGG--CAG---TCAT---TGTCACCTTTTGAAGTCAGCCCGTTTTTCGGGATGCG--------ACTGTTGTGCTA-----------GCTTTCCATTTTGTGTTGCCTACTTTTGAGCGTTCGATT------TTATTTTCACTTCCTTAGGTTT-TCAGTTGATTTTTCTTTTCA-ATTACTTC--TTGTGGCTCAAATATTGTTTAGTATTTGGTAAATTGTATATAAATTTGTTCATCAGACTATTTCTTTCACTTAAAAATATCATACATTATTTTTCCTT----AAATTGAGTACTCAGAGTGTAAATTTTACATCCTTTGTTTGA----------------------------------------------------GTGTCGTT-------------T--TT-TGCTGTCA-------------------------------------TAT----------------TCTTTTAATACTAATCTTGAA----TATTTCTCTTG-CTCTGC-TCTCA------TTCCAATATCCCC-----CACC-CAACAGATCTTGCCTAGAAAGTTT----TGGAT------------TA-AAT------------CGGTAATGC-------AACAATTTGTGTTGTGACTTC---ACATTTTCAGCT----------------------------------------------GCAAAACTG---------------------------------------------TTTTAGAAAGAAATTATTTCTAAT------------T------CG--TG-------T-------------------------CATTTTC-TAC----------------ATC----CGAACAGAGAACGCTAGTGGCCTGGTGACCGTCATAACCGAGCAGGAAATGGAAACC
droBip1 scf7180000395971:205271-205512 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCAATACTAATCTGGAA----TATTTCTCTTC-CTCTGC-TCTCA------TTCCAATATCCCT-----CACC-CAACAGATCTTGCCTAGAAAGTTT----TGGAT------------TA-AAT------------CGGTAATGC-------AACAATTTGTGTTGTCACTAC---ATATTTTCAGCT-------------------------------------------GCGAT------------------ATT-------------------------------T-TTACAAAGAAATTATTTCTAAT------------T------AT--AT-------T-------------------------TATATTC-TAC----------------CTC----CAAACAGAGAACGCTAGTGGCCTGGTGACCGTCATAACCGAGCAGGAAATGGAGAGC
dp5 2:29929790-29930238 + GCCACCGCACTCGAGTCTGATGCAACATCAA------------------------CAGCAGCAGCAGCACTTGAATGGTGCGGAAATTGCTTA--AAG---TTTC---GGTTCC----------------------TTCATTTTTC----------TTC-------------------------------------------------------------------------------GAGTTT--------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCA-----TGTTTCCT------AGAACT----------------------TTGTTTGTT-------------TGTGATTGATGTTGTGCTT-TCT-T--------------GAC-TGT----TGAT---TGTGATTT--C----------TTCTAATCTGGAATATATATTTCTCTTG-CTTTT---TGCA------TTCTTATGCTCTC------ATTTGGTCAGATCTCACCTAAAA-ATGTTGAATGGAT------------TGAAAGAATCTCAGTGCCCGGTAATGCCCTACAAAACAATGAGTGTTGTCTTTTC---TTATTTTTTGCA-------------------------------------------GCAGCAGAACAGCAGAAAGT-----------------------------CCTTAAAGA------------TTAACCTT-ACTTATAC------------CAAAATA------TC-----------------------T--GTGT------TTTTGT------------T----TGTTTAGAAAAAGCCAGTGGCCTGGTGACCATCATAACCGAACAGGAAGTGGAGAAC
droPer2 scaffold_6:5298935-5299382 + GCCACCGCACTCGAGCCTGATGCAACATCAA------------------------CAGCAGCAGCAGCACTTGAATGGTGCGGAAATTGCTTA--AAG---TTTC---GGTTCC----------------------TTCATTTTT-----------TTC-------------------------------------------------------------------------------GAGTTT--------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCA-----TGTTTCCT------AGAACT----------------------TTATTTGTT-------------TGTGATTGATGTTGTGCTT-TCT-T--------------GAC-TGT----TGAT---TGTGATTT--C----------TTCTAATCTGGAATATATATTTCTCTTG-CTTTT---TGCA------TTCTTATGCTCTC------ATTTGGTCAGATCTCACCTAAAA-ATGTTGAATGGAT------------TGAAAGAATCTCAGTGCCCGGTAATGCCCTACAAAACAATGAGTGTTGTCTTTTC---TTATTTTTTGCA-------------------------------------------GCAGCAGAACAGCAGAAAGT-----------------------------CCTTAAAGA------------TTAACCTT-ACTTATAC------------CAAAATA------TC-----------------------T--GTGT------TTTTGT------------T----TGTTTAGAAAAAGCCAGTGGCCTGGTGACCATCATAACCGAACAGGAAGTGGAGAAC
droWil2 scf2_1100000004943:4253522-4254016 + GCCACCACATTCGAGTCTCTTGCTACAG---------------------------CAACAGCAGCAACATTTGAATGGTGCGGAAATTGTTTTGAGAGTAGTGAA---TGTAGAATTATGAAAATGCCA---TTTTGT-------------------------------------------------------------------------------------------------------TT-TCAAACGATTTTTCTTATTATATTCCT--------------------------------------------------------------------------------------------------------------------------------------------------TATTTGGGCTATG-------CTTCTTTTGC---------TG------------TTGTTTTTT-------------TCTGT-TGTTGTTGTG-----TT-T--------------GAA-TGTAGACAAAAATTTGA----------AA--TTTAAACTAATA-CGAA----AATTTCTCTTCTCCCTGT-TC--ATGCGGCTACCAAAACAAA-AAT-AAAAA-TCACAGATCATGCCTAGAATGATT---TTGGATAATACTAGATACTA-AAT------------CGGTAAAGC-------GAAACAATT----------------ATATTTTATAGATG-T-G-TGTGATTTTATTTCCTTTTTTCTTTTGAAATGTTTGA-----AAT---AGA---T-TTAA------------------------CTTTAAAGA------------TGTTT----ACTAACGT--TT--T------AT--T-------TT-----------------------T--GTGTCT-TGT----------------TTCTTAATTG---------GCAGAAGCTTTGGTGACTGTCATAACCGAACAGGAAATTGAGCCG
droVir3 scaffold_13047:16167901-16168408 - TCCACCACACTCCAGCTTGCTGCAGC---------------------------------------AGCAGATGAACGGTGCGAAATTTGTTGG--AAT---------------------------GAATCAATTTTTTGTTTTTTTTTTTTTTTG-----TTTTTGTTGTTAGTTGACTTTTGGT-TTGCTCAG------------------------------------------------------------------------TTGGTTCAGTTGTGGC------------------------------------------------------------------------------GATATTTTGTGACA-ACAAATCAAAAAGTTTTAATG--GATTTTTATTTCGTTGCTTCACTGCA---------------------GCT--------TCTTGCTTTT----TATGTTGTT-------------TGTGC-T-----------------C--------------GAT----GGTCAAA---CTCT---ATTTAT--TTCGAAAAACTAATGTAAAC------TTTCTCTTG-CTTAAT-CCTCC-----CTACCATTGCCAACTAT--ATTA-CTATAGATCTTACCTAGAGCGTTC-----GGAG-----TGTATGTCA-AAG------------CGGTAATAC-------AAACCTTTCTGTTGTTCA------------------AAG-TAAA----------------------------------------------------------AA----------------------------------T-----------TCCA------------------------TATATATATATAATGTGTGTCCAACTATAATGTATACCTG-ACGATTTTG------ATTGTTTTCAACTT----GAAACAGAAACAGCTGATAATTTGGTCACTGTCATCACGGAACAGGAAATCGAGTCT
droMoj3 scaffold_6540:12483483-12484025 - TCCGCCGCACTCCAGCTTGCTGC---------------------------------------AGCAGCATATGAATGGTGCGGAATTTGTCGG--AA----TGATTTTTGATACCATTTTTTGTTTTT---------TTGTTTTT--------TGTTTTTGCCTTTCGTTGAGTTTCGTA---GT-TTTTTCTTTCTA--------------------------------------------------------------------TTAATTCAGTT-----------------------------------------------------------------------------------GATATTTTCTCTT----AAAGTGAAAAGTTTTAATG--GATTTTTATTTCGTTGCTTGATTTGA---------------------GCTGTTATTGCCTTTGCTTTTCGATGTTGTTGTTTGTGCATTTCGTTTGTGT--------------------------------TTCAT----GCCCAAA---GTGA---ATTTAT-TC-TCAAGAACTAATCTGAAC------TTTCTCTTG-CTTAAT-TCCCT-----ATGCCATTGCCCACAATATACGA-TTCTAGATCTTGGCTAGAGCGTTT-----GGAA-----TGTATGTCA-AAG------------CGGTAATTC-------AAACATTTCTGTTGTGCACTCT--TCAA---------------------------------------------------------------------------ATATATATGATGCTATATATATCGTAGTCCTA-TATAAGTCGGCGATTAC----------------------------------TTAAAC--------------------------T--ATG-TATTC--CTCTCT------TCG----GAAACAGAAGCAGCAGATAACTTGGTCACCGTCATCACCGAACAGGAAATCGAGCCC
droGri2 scaffold_15116:1038234-1038708 - TCCGCCGCATTCCAGTTTGTTGCAAC---------------------------------------AGCACATGAATGGTGGGGAAATATCTTG-AAAA---TTAC---TTAATTCTTTTGAA----------TTTTTGTAC---T--------TTTCCTCAGTTT----------------------------------TTTCAGTTGGTTGATT------TGTTCTTC----------------------------------T-GTTA------------A----------------------------------------------------------------------------------------GATATGTAGATTAAA-------------------------------------A-----TTTTTTTT------AGAGCT----------------------CTTTTTGCT-------------T---T-TGATGTTGTT--T------GTACATTTGTGTTTGAA----AGCCAAA---CTCT---ATTTAA--TCCGAAAAACTAATATGAA------ATCTCTCTTG-CTTAAT-TCCCC------TGCCATTGCCCACCTA--ATGA-CCATAGATCTTGGCTAGAACGTTT-----GGAG-----TGTATGTCA-AAG------------CGGTAATGC-------AAACAACTATGTTGTCTTAAA---AAAATAAAACAGAAT-ATGA----------------------------------------------------------AAT-----------------------ATTTAAAAA------------TAATTACC------------------A--CAAATA--TCTGA-C--------------------------AAAATT-TATTTCCATGTCT------TTG----GAAACAGATGGCGCCACAAATTTGGTCACTGTTATAACGGAGCAGGAAATCGAGCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCCCCCGCACTCCAGTCTCATGCAACAG---------------------------CAGCACCAGCAGCACTTGAATGGTGCGGATATTAATGG--CAG---TCAC---TGTCACCTTTTGTAGCCGGCTCAATTTTCCGACCACC--------TCGGTTCAGCTTGTGTTGAGTTTGGTTTTCGT-TTGCGGTGCCTACTTTAGGGCACTGGATT------TTGATTTCATTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATTGCT----------------------------TGTGTTGTT-------------TGTGT-TGATGTCGCT--TT-CTCTGTACAACCTTGTTGGAA----TACA---AGTTTCC----------ACTATAAATACTAATCTCGAT----TATTTCTCTTG-CTCTGC-TCTCT------TTCCACTGCCCCAAAT--CGCC-ATGCAGATCTTGCCTAGAATGTGT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTAGTGTTGTCCTCTT---ACCATTTCAGAGAAT-TGAA----------------------------------------------------------AAT-------------------------------A-T-------------------------ACCA--ATATGC--CAGATTT-TCTAATC--------------------------GCGATTTTGTAT-----------CTATTA----TCCGCAGAGAACTCAAGCGGCCTGGTGACCGTAATCACAGAGCAGGAATTGGAGTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCAAGCGGCCTGGTGAC............................2111.00101000000000000000
...............................................................................................................................................................................................................................GATTTCATTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTAATCACAGAGCAGGAATTG......2411.00101000000000000000
droSec2
GCCCCCGCACTCCAGTCTCATGCAACAG---------------------------CAGCACCAGCAGCACTTGAATGGTGCGGATATTAATGG--CAG---TCAC---TGTCACCTTTTGTAGCCGGCTCAATTTTCCGACCACC--------TCTGTTCAGCTTGTGTTGAGTTTGGTTTTCGT-TTGCGGTGCCTACTTTAGGGCACTGGATT------TTGATTTCATTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATTGCT----------------------------TGTGTTGTT-------------TGTGT-TGATGTCGCT--TT-CTCTGTACAACCTTATTGGAA----TGCA---AGTTTCC----------ACTATAAATACTAATCTCGAT----TATTTCTCTTG-CTCTGC-TCTCT------TTCCACTACCCCAAAT--CGCC-ATGCAGATCTTGCCTAGAATGTGT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTAGTGTTGTCATCTT---ACCATTTCAGAGAAT-TAAA----------------------------------------------------------AAT-------------------------------A-T-------------------------ACTT--ATATGC--CAGATTT-TCTAATC--------------------------GCGATTTTGTAT-----------CTATTA----TCCGCAGAGAACTCAAGCGGCCTGGTGACCGTAATCACAGAGCAGGAATTGGAGTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCAAGCGGCCTGGTGACCGT.........................2411.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGCAGGAATTGGAGT..2511.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGCAGGAATTGG.....2211.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCAAGCGGCCTGGTGACC...........................2211.0010100
.......................................................................................................................................................................GTTGAGTTTGGTTTTCGT-TTGCGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCACAGAGCAGGAATTGGA....2111.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT----TGGAT------------TA-AAG------------CGGTAATGC-------.....................................................................................................................................................................................................................................................................................................................2111.0010010
.........................CAG---------------------------CAGCACCAGCAGCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.0711000
dm3
GCCCCCGCACTCCAGTCTGATGCAACAG---------------------------CAGCACCAGCAGCACTTGAATGGTGCGGATATTAATGG--CAG---TCAC---TGTCACCTTTTGTACCCGGCTCAATTTTCCGACCACC--------TCTGTTCAGCTTGTGTTGAGTTTGGTTTTCGT-TTGCGGTGTCTACTTTAGGGCACTGGATT------TTGATTTCATTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATTGCT----------------------------TGTGTTGTC-------------TGTGT-TGATGTCGCT--TA-CCCTGTACAACCTTGTTGCAA----TACA---AGTTTCC----------ACTATTAATACTAATCAAGAT----TATTTCTCTTG-CTCTGC-TCTCT------TTCCACTGCCACAAAT--CGCC-ATGCAGATCTTGCCTAGAATGTGT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTAGTGTTGTCATCTT---ACCATTTCAGAGAGT-TGAA----------------------------------------------------------AAT-------------------------------A-T-------------------------ACAA--ATATGC--CAGATTT-TCTAATC--------------------------GCGATTTTATGT-----------CTATTA----TCCGCAGAGAACTCAAGTGGCCTAGTGACCGTAATCACAGAGCAGGAATTGGAGAGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTCAAGTGGCCTAGTGAC............................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................ACTTTAGGGCACTGGATT------TTGATTTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000
.........................................................................................................................................................................................................TAGGGCACTGGATT------TTGATTTCATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGACCGTAATCACAGAGCAGGAAT........2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGAATTGGAGAGC1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGCAGGAATTGGAGAGC2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGAATGTGT----TGGAT------------TA-AAG------------CGG..................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGTGGCCTAGTGACCG..........................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAGTGACCGTAATCACAGA................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCCTAGAATGTGT----TGGAT------------TA-AAG------------C....................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCACAGAGCAGGAATTGGAGAG.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGC-TCTCT------TTCCACTGCCACAAA............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTAATCACAGAGCAGGAATT.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AGCACCAGCAGCACTTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAAAT--CGCC-ATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAGTGACCGTAATCACAGC................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTA----TCCGCAGAGAACTCAAGT.......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................CC--------TCTGTTCAGCTTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATTGCT----------------------------TGTGTTGTC-------------TGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGC-TCTCT------TTCCACTGCCACAAAT--.........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA--ATATGC--CAGATTT-TCTAATC--------------------------GCGATT....................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGAT----TATTTCTCTTG-CTCTGC-......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGAGCAGGAATTGGAGAGC2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGTTGTCATCTT---ACCATT.......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTTGCCTAGAATGTGT----T.......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCTAGTGACCGTAATCACAGAGCA.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAAGTGGCCTAGTGACCGTAA.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGCAGGAATTGGAGAG.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................TGTGTTGAGTTTGGTTTTCGT-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGCT--TA-CCCTGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCCTAGAATGTGT----TGGAT------------T......................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GATGCAACAG---------------------------CAGCACCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TTAGGGCACTGGATT------TTGATTTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGACCGTAATCACAGAGCAGG...........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................TGGTTTTCGT-TTGCGGTGTCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAGCAGGAATTGGAGAG.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGTAATCACAGAGCAGGAATTGG.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TCGT-TTGCGGTGTCTACTTTAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTAATCACAGAGCAGGA..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCAAGTGGCCTAGTGACCGTAATT.....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GATGCAACAG---------------------------CAGCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GATGCAACAG---------------------------CAGCACCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................G---------------------------CAGCACCAGCAGCACTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CAACAG---------------------------CAGCACCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droEre2
GCCCCCGCACTCCAGTCTCATGCAACAGCAGCAA---------CAGCAGCACCAGCAGCACCAGCAGCACTTGAATGGTGCGGATATTAATGG--CAG---TCAC---TGTCACCTT-TGTAGCCGGCTCAATTTTCCGACCACC--------TCTGTGGAGCTTGTGTTCAGTTTGGTTTTCGT-TTGCGGTGCCTACTTTCGGGCGCTGGATT------TTGATTTCATTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATTGCT----------------------------TGTGTTGTT-------------TGTGT-TGATGTCGTT--TT-CCCTGTACATTTCTGTTGGAA----CCGA---ATTTTGC----------CCTACAATTACTAATCTCCTT----TATTTCTCT-G-CTCTGC-TCTCT------TTCTACTGTCCCAAAT--CGCC-ATGCAGATCTTGCCTAGAATGCGT----TGGAT------------TG-AAG------------CGGTAATGC-------AACGATTTGTGTCGTCACCTT---GCCATTTCAGAGAAT-TGAA----------------------------------------------------------AAT-------------------------------A-T-------------------------GCCA--GCATA---CAGATTT-GCTAATT--------------------------GAAATTCTATCT-----------TTGTTG----TCCACAGATAACTCAAGCGGACTGGTGACCGTCATCACAGAGCAGGAATTGGAGAGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACTGTCCCAAAT--CGCC-ATGCAGAT............................................................................................................................................................................................................................................................................................................................................................................................2812.0020000002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACTCAAGCGGACTGGTGACCGTC........................2711.0010001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCAGGAATTGGAGA..1811.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACTCAAGCGGACTGGT...............................2011.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCACAGAGCAGGAATTGGAG...2411.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCGT----TGGAT------------TG-AAG------------CG...................................................................................................................................................................................................................................................................................................................................2011.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACTCAAGCGGACTGGTGAC............................2311.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGCGGACTGGTGACCGTC........................2311.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAAGCGGACTGGTGAC............................2011.0010010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGAATGCGT----TGGAT------------TG-A...................................................................................................................................................................................................................................................................................................................................................2111.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAAAT--CGCC-ATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
droYak3
GCCCCCGCACTCCAGCCTTATGCAACAGCAGCAA---------CAGCAGCAACAGCAGCACCAGCAGCACTTGAATGGTGCGGATATTAATGG--CAG---TCAC---TGTCACCTTTTGTAGCCGGCTCAATTTTCCGGCCACC--------TCTGTGGAGCTTGTGTTGAGTTTGGTTTTCGT-TTGCGGTGCCTACTTTAGGGCGCTGGATT------TTGATTTCATTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATTGCT----------------------------TGTGTTGTT-------------TGTGT-TGATGTCGCT--TT-CTCTATACAATCTTGTTGGAA----TGGA---AGTTTCC----------ACTATAAATACTAATCTCGTT----TATTTCTCTTG-CTCTGC-TCTCT------TTCTACTGCCCAAAAT--CGCC-ATGCAGATCTTGCCTAGAATGAGT----TGGAA------------TA-AAG------------CGGTAATGC-------AACGATTTGTGTCGTCACCTT---ACCATTTCAGGAACT-GGAA----------------------------------------------------------AAT-------------------------------A-T------------------------TACCA--GTATAA--CAGATTT-TCTAATC--------------------------GGAATTTTACCT-----------CTATTA----TCGACAGATAACTCAAGTGGACTGGTGACCGTAATCACAGAGCAGGAATTGGAGAGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTCAAGTGGACTGGT...............................1913.00300000030000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGTAATCACAGAGCAGGAATTGGA....2711.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGCAGGAATTGGAGAGC2711.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGTGGACTGGTGACCGT.........................2211.00100000010000
..........................................................................................................................................................................................................AGGGCGCTGGATT------TTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGCAGGAAT........1911.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCAGGAATTGGAGAGC2011.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGAATTGGAGAGC1811.00110000000000
...................................................................................................................................ATTTTCCGGCCACC--------TCTGTGGAGCTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
..............................................CAGCAACAGCAGCACCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.09100010000000
......................CAACAGCAGCAA---------CAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010000000
................................AA---------CAGCAGCAACAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
droEug1
ACCCCCGCACTCCAGCCTCATGCAGCAGCAACAT---------CAACAGCA---TCAGCATCAGCAGCACTTGAATGGTGCGGAAATTGATGG--CAG---TCAC---TGTCACCTTTCGTAGCTTGCTCAATTTTACTACCACC--------TCTGTTGAGTTT-----------GTGTTTCAT-TTGGGGTGCCTACTTTCAGGCGCTGGATT------TTAATTTCATTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AATCTCT----------------------------TGTGTTGTT-------------TGTGTTTCATGTTGTT--T-CCT-T--------------GGTCTTT----ATAC-------------C-CTCTACAAATACTAATCTCGAT----TATTTCTCTTG-CTCTGC-TCTTT------TTCCACTGCTCCT------GAC-CAGCAGATCTTGCCTAGAATGTAT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTTATGTTGTCACTTC---ACCATTTCAGGAAAT-CAGA---------------------------------------------------A------AGA-------------------------------A-T-------------------------GTTG--GTAAAC--GAGATT--TCTAATC--------------------------GGGATTTCATTT-----------CTATTT----TCCACAGAAAACTCTAGTGGCCTGGTGACCGCCATTACCGAGCAGGAATTGGAGAGCSizeHit CountTotal NormTotal
No Reads
droBia1
GCCCCCGCACTCCAGTCTCATGCAGCAG---------------------------CAGCATCAGCAGCACTTGAATGGTGCGGAAATGAATGG--CAG---TCAC---TGTCACCTTTTGTAGCCTGCTCAATTTTATGACCACT--------TCTGTGGAGCCCGTGTTGAGTCTGTGTTTCGT-TTGCGGTGCCTACTTTCGGGCACTGCATT------TTATTTTCGGTTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CATCTCT----------------------------TGTGTTGTT-------------TGTGT-TGATGTTGTC--T-CTC-T--------------GGT-TTT----ATAC-----C----------CCTATAAATACTAATCTCGAT----TATTTCTCTTG-C-CTGC-TCTCG------TTCCACTGCCCCAAAC--CGAA-CTGCAGATCTTGCCTAGATTGCGT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTTGTGTTGTCACTTC---ACCATTTCAGCGAAT-CGAA-------------------------------------------ACAG-----------------------------------------------C------GA-----------AC----------TTATGT--CAGATT--CCTAATC--------------------------CGGATT-TATTT-----------CCCCTT----TCCGCAGAGAACTCCAGTGGCCTGGTGACCGTCATTACCGAGCAGGAGCTGGAGAGCSizeHit CountTotal NormTotal
No Reads
droTak1
ACCCCCGCACTCCAGCCTCATGCAGCAG---------------------------CAGCATCAGCAGCACTTGAATGGTGCGGAAATTGATGG--CAC---TCAC---TGTCACCTTTTGTAGCCTGCTCAATTTTATGGCCACC--------TCTGTTGAGCT-----TCAGTTTGTGTTTCGT-TTGCGGTGCCTACATTCGGGCGCTGGATT------TTATTTTCGCTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------AATCTCC----------------------------TCTGTTGTT-------------TGTGT-TGATGTTGTC--T-CCT-T--------------GGTTTTT----ACAC-------------C-CTCTATAAATACTAATCTCGAA----TATTTCTCTTG-CTCTGC-TCTCG------TTCCACTGCCCCATGCC-CGCC-AAGCAGATCTTGCCTAGATTGTGT----TGGAC------------TA-AAG------------CGGTAATGC-------AACGATTTGTGTTGTCACCTTTTCACCATTTCAGCAAAT-CGAA----------------------------------------------------TGTTAAAAT-------------------------------A-T-------------------------TCAA----------AAAATT--TCTAATC--------------------------TGGATT-TATTT-----------CCATTT----TCCACAGAGAACTCTAGTGGCCTGGTGACCATCATTACCGAGCAGGAACTGGAGAGCSizeHit CountTotal NormTotal
No Reads
droEle1
GCCCCCGCACTCCAGTCTCATGCAACAGCAACA---GCAGCATCAGCAGCAGCAGCATCATCAGCAGCACTTGAATGGTGCGGATACTTCTGG--CAGCCGCCAC---TGTCGCCTTTTGTAGCCTGTCCAATTTTGTGACCGCC--------TCTGTTGAGTTT-----------GTGTTTCGTTTTGCGGTGCCTACTTTCAGGCGCTGGATTATATTTTTATTTTCATTTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------ACTCTCTTGTGC-----------------------TGTGTTGTT-------------TGTGT-TTATGTTGTT--T-CCT-T--------------GGT-TGT----ACAA--CTGT---AT--C---CTCTAAATACTAATCTCGAT----TATTTCTCTTG-CTCTGC-TCTCG------TTCCACTGCCCC------CGCC-CTGCAGATCTTGCCTAGAATGTGT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTTGTGTTGTCACTTT---TCCATTTCAGGAAAT-CGAA----------------------------------------------------------AAC-------------------------------A-C-------------------------TCTT--TTTTTCCAGAGATTTATCTAATC--------------------------GGAATG-TATTT-----------CTGTTT----TCTACAGAGAACTCTAGTGGCCTGGTGACCGTCATTACCGAGCAGGAAATGGAGAGCSizeHit CountTotal NormTotal
No Reads
droRho1
GCCCCCGCACTCCAGTCTCATGCAGCAG---------------------------CAGCATCAGCAGCACTTGAATGGTGCGGATATT-CTGG--CAG---TCAC---TGTCGCCTTTCCTAGAC-GCTCAATTTTGTGACCGCC--------TCTGTGGAATTT-----------GTGTTTCGT-TTGCGGTGCCTACTTTCGGGCGCTGGATT------TTATTTTCAATTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------ACTCTCT----------------------------TGTGTTGTT-------------TGTGT-TGATGTTGTTCTT-CCT-T--------------GGT-TCT----ACAT--CTAT---AT--C---CTCTGAATACTAATATCGAT----AATTTCTCTTG-CTCTGC-TCTCG------TTTCACTGCTCC------CGCC-CAGCAGATCTTGCCTAGAATGTGT----TGGAT------------TAAAAG------------CGGTAATGC-------AACGATTTGTGTTGTCACTTC----CAATTTCAGCAAAT-GGAA----------------------------------------------------------ACA-------------------------------A-T-------------------------T-----TTATGC--CAGATT--TCTAAAC--------------------------GGAGTG-TATTT-----------CTGTTT----TCCACAGAGAACTCTAGTGGCCTGGTGACGGTCATTACCGAGCAGGAGTTGGAGAGCSizeHit CountTotal NormTotal
No Reads
droFic1
GCCCCCGCACTCTAGTCTCATGCAGCAGCAGCAACAACAGCAGCAACATCAGCTGCAGCATCAGCAGCACTTGAATGGTGCGGAAATTGCCGA--CAG---TCAA---TGTCACCTTTTGTAGCCTGCTCAATTTTCTGACCGCC--------TCTGTTGAGTTT-----------GTGTTTCGT-TTGCGATGCCTACTTTCAGGCACCGGATT------TTATTTTCGATTC----GATTTT--------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------GATCCGGGTCG-------AATCTCT----------------------------TTTGTTGTT-------------TGTGT-TGATGTTGTC--TTCTT-T--------------GGT-TCT----ATAC-------------C-CTCTATAAGTACTAATCTCGAT----TATTTCTCTTG-CTCTGC-TCTCG------TTCCACTGCCCCT--C--CGTA-TTGCAGATCTTGCCTAGAATGTGT----TGGAT------------TA-AAG------------CGGTAATGC-------AACGATTCGTGTTGTCACTTT---ACTATTTCAGCAAAT-CAAG------------------------------------------------------T-CAAAC-------------------------------A-T-----------TCAA------------------------CATATT--TGTAACC--------------------------GGAATT-TGTCT-----------C---------TCCGCAGAGAACTCTAGTGGATTGGTGACCGTCATCACCGAACAGGAAATGGAGAGCSizeHit CountTotal NormTotal
No Reads
droKik1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTT------------TTA-GTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------ATTCCCT----------------------------TGTGTTGCT-------------TGCGT-CAATGTTGTG----CCT-T--------------GGT-TGT----ATAT---TCT---AT--C---TTCGAAATACTAATCTCAAT----TATTTCTCTTG-CTCTGCCTCTTA------TTCCTCCGCCC-------CGCC-CCGCAGATCTTGCCTAGAAAGTGT----TGGAT------------TA-AAG------------CGGTAATGC-------AAACATTTGTGTTGTCACTTG---ACT-TTACT-CAAATCGGAA----------------------------------------------------------AAG-------------------------------T-T-------------------------T-----TTAAAA--TAGATT--TATAATC--------------------------AGTATT-TTCTT-----------CAATTT----TCTGTAGAGAACGTTAGCGGCCTGGTGACCATCATAACCGAGCAGGAAATGGAGAGCSizeHit CountTotal NormTotal
No Reads
droAna3
GCCGCCACACTCCAGTCTATTTCAGCAT---------------------------CAACAGCAGCAGCATTTGAACGGTGCGGAAATTGCTGG--CAG---TCAT---TGTCACCTTTTGAAGTCAGCCCGTTTTTCGGGATGCG--------ACTGTTGTGCTA-----------GCTTTCCATTTTGTGTTGCCTACTTTTGAGCGTTCGATT------TTATTTTCACTTCCTTAGGTTT-TCAGTTGATTTTTCTTTTCA-ATTACTTC--TTGTGGCTCAAATATTGTTTAGTATTTGGTAAATTGTATATAAATTTGTTCATCAGACTATTTCTTTCACTTAAAAATATCATACATTATTTTTCCTT----AAATTGAGTACTCAGAGTGTAAATTTTACATCCTTTGTTTGA----------------------------------------------------GTGTCGTT-------------T--TT-TGCTGTCA-------------------------------------TAT----------------TCTTTTAATACTAATCTTGAA----TATTTCTCTTG-CTCTGC-TCTCA------TTCCAATATCCCC-----CACC-CAACAGATCTTGCCTAGAAAGTTT----TGGAT------------TA-AAT------------CGGTAATGC-------AACAATTTGTGTTGTGACTTC---ACATTTTCAGCT----------------------------------------------GCAAAACTG---------------------------------------------TTTTAGAAAGAAATTATTTCTAAT------------T------CG--TG-------T-------------------------CATTTTC-TAC----------------ATC----CGAACAGAGAACGCTAGTGGCCTGGTGACCGTCATAACCGAGCAGGAAATGGAAACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---ACATTTTCAGCT----------------------------------------------GCAAA..............................................................................................................................................................................................................................2011.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTAGTGGCCTGGTGACCGT.........................2311.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGGCCTGGTGACCGTCATAACC..................2511.001000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAACCGAGCAGGAAATGGA....2111.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCTGGTGACCGTCATA.....................2011.001000001
droBip1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCAATACTAATCTGGAA----TATTTCTCTTC-CTCTGC-TCTCA------TTCCAATATCCCT-----CACC-CAACAGATCTTGCCTAGAAAGTTT----TGGAT------------TA-AAT------------CGGTAATGC-------AACAATTTGTGTTGTCACTAC---ATATTTTCAGCT-------------------------------------------GCGAT------------------ATT-------------------------------T-TTACAAAGAAATTATTTCTAAT------------T------AT--AT-------T-------------------------TATATTC-TAC----------------CTC----CAAACAGAGAACGCTAGTGGCCTGGTGACCGTCATAACCGAGCAGGAAATGGAGAGCSizeHit CountTotal NormTotal
No Reads
dp5
GCCACCGCACTCGAGTCTGATGCAACATCAA------------------------CAGCAGCAGCAGCACTTGAATGGTGCGGAAATTGCTTA--AAG---TTTC---GGTTCC----------------------TTCATTTTTC----------TTC-------------------------------------------------------------------------------GAGTTT--------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCA-----TGTTTCCT------AGAACT----------------------TTGTTTGTT-------------TGTGATTGATGTTGTGCTT-TCT-T--------------GAC-TGT----TGAT---TGTGATTT--C----------TTCTAATCTGGAATATATATTTCTCTTG-CTTTT---TGCA------TTCTTATGCTCTC------ATTTGGTCAGATCTCACCTAAAA-ATGTTGAATGGAT------------TGAAAGAATCTCAGTGCCCGGTAATGCCCTACAAAACAATGAGTGTTGTCTTTTC---TTATTTTTTGCA-------------------------------------------GCAGCAGAACAGCAGAAAGT-----------------------------CCTTAAAGA------------TTAACCTT-ACTTATAC------------CAAAATA------TC-----------------------T--GTGT------TTTTGT------------T----TGTTTAGAAAAAGCCAGTGGCCTGGTGACCATCATAACCGAACAGGAAGTGGAGAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTT-TCT-T--------------GAC-TGT----TGAT---T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATAACCGAACAGGAAGTGGAGAAC2711.0010100000000
......................CAACATCAA------------------------CAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.1930300000000
......................CAACATCAA------------------------CAGCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18170.0610100000000
..........................ATCAA------------------------CAGCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
droPer2
GCCACCGCACTCGAGCCTGATGCAACATCAA------------------------CAGCAGCAGCAGCACTTGAATGGTGCGGAAATTGCTTA--AAG---TTTC---GGTTCC----------------------TTCATTTTT-----------TTC-------------------------------------------------------------------------------GAGTTT--------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCA-----TGTTTCCT------AGAACT----------------------TTATTTGTT-------------TGTGATTGATGTTGTGCTT-TCT-T--------------GAC-TGT----TGAT---TGTGATTT--C----------TTCTAATCTGGAATATATATTTCTCTTG-CTTTT---TGCA------TTCTTATGCTCTC------ATTTGGTCAGATCTCACCTAAAA-ATGTTGAATGGAT------------TGAAAGAATCTCAGTGCCCGGTAATGCCCTACAAAACAATGAGTGTTGTCTTTTC---TTATTTTTTGCA-------------------------------------------GCAGCAGAACAGCAGAAAGT-----------------------------CCTTAAAGA------------TTAACCTT-ACTTATAC------------CAAAATA------TC-----------------------T--GTGT------TTTTGT------------T----TGTTTAGAAAAAGCCAGTGGCCTGGTGACCATCATAACCGAACAGGAAGTGGAGAACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAATCTCAGTGCCC....................................................................................................................................................................................................................................................................................................................................1811.001100000
droWil2
GCCACCACATTCGAGTCTCTTGCTACAG---------------------------CAACAGCAGCAACATTTGAATGGTGCGGAAATTGTTTTGAGAGTAGTGAA---TGTAGAATTATGAAAATGCCA---TTTTGT-------------------------------------------------------------------------------------------------------TT-TCAAACGATTTTTCTTATTATATTCCT--------------------------------------------------------------------------------------------------------------------------------------------------TATTTGGGCTATG-------CTTCTTTTGC---------TG------------TTGTTTTTT-------------TCTGT-TGTTGTTGTG-----TT-T--------------GAA-TGTAGACAAAAATTTGA----------AA--TTTAAACTAATA-CGAA----AATTTCTCTTCTCCCTGT-TC--ATGCGGCTACCAAAACAAA-AAT-AAAAA-TCACAGATCATGCCTAGAATGATT---TTGGATAATACTAGATACTA-AAT------------CGGTAAAGC-------GAAACAATT----------------ATATTTTATAGATG-T-G-TGTGATTTTATTTCCTTTTTTCTTTTGAAATGTTTGA-----AAT---AGA---T-TTAA------------------------CTTTAAAGA------------TGTTT----ACTAACGT--TT--T------AT--T-------TT-----------------------T--GTGTCT-TGT----------------TTCTTAATTG---------GCAGAAGCTTTGGTGACTGTCATAACCGAACAGGAAATTGAGCCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATAACCGAACAGGAAATTGAGC..2511.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAACAGGAAATTGAGCC.2111.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAACAGGAAATTGAGC..2011.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATT---TTGGATAATACTAGATA........................................................................................................................................................................................................................................................................................................................................................2311.00100010
droVir3
TCCACCACACTCCAGCTTGCTGCAGC---------------------------------------AGCAGATGAACGGTGCGAAATTTGTTGG--AAT---------------------------GAATCAATTTTTTGTTTTTTTTTTTTTTTG-----TTTTTGTTGTTAGTTGACTTTTGGT-TTGCTCAG------------------------------------------------------------------------TTGGTTCAGTTGTGGC------------------------------------------------------------------------------GATATTTTGTGACA-ACAAATCAAAAAGTTTTAATG--GATTTTTATTTCGTTGCTTCACTGCA---------------------GCT--------TCTTGCTTTT----TATGTTGTT-------------TGTGC-T-----------------C--------------GAT----GGTCAAA---CTCT---ATTTAT--TTCGAAAAACTAATGTAAAC------TTTCTCTTG-CTTAAT-CCTCC-----CTACCATTGCCAACTAT--ATTA-CTATAGATCTTACCTAGAGCGTTC-----GGAG-----TGTATGTCA-AAG------------CGGTAATAC-------AAACCTTTCTGTTGTTCA------------------AAG-TAAA----------------------------------------------------------AA----------------------------------T-----------TCCA------------------------TATATATATATAATGTGTGTCCAACTATAATGTATACCTG-ACGATTTTG------ATTGTTTTCAACTT----GAAACAGAAACAGCTGATAATTTGGTCACTGTCATCACGGAACAGGAAATCGAGTCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGTCACTGTCATCACGGAACAG............2611.001000100000000000000000000000000000000000000000000000000000000000
........................GC---------------------------------------AGCAGATGAACGGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTGGTCACTGTCATCACGGA................2511.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................GTTCAGTTGTGGC------------------------------------------------------------------------------GATATTTTGTGACA-A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCACGGAACAGGAAAT.......1811.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTGGTCACTGTCATCACGGAA...............2511.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTAGAGCGTTC-----GGAG-----T.............................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCATCACGGAACAGGAAATCGAGT..2711.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACTGTCATCACGGAACAG............2211.001000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCTGATAATTTGGTC..............................1911.001000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATGTGTGTCCAACTATAATGTAT................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGATAATTTGGTCACT...........................1911.001000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACGGAACAGGAAATCGAGT..2211.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACGGAACAGGAAATCGAGTC.2311.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTTGGTCACTGTCAT......................2011.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTGGTCACTGTCAT......................1911.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................TTGTTTTTTTTTTTTTTTG-----T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010000000000000000000000000000000000000000000000000000000000
droMoj3
TCCGCCGCACTCCAGCTTGCTGC---------------------------------------AGCAGCATATGAATGGTGCGGAATTTGTCGG--AA----TGATTTTTGATACCATTTTTTGTTTTT---------TTGTTTTT--------TGTTTTTGCCTTTCGTTGAGTTTCGTA---GT-TTTTTCTTTCTA--------------------------------------------------------------------TTAATTCAGTT-----------------------------------------------------------------------------------GATATTTTCTCTT----AAAGTGAAAAGTTTTAATG--GATTTTTATTTCGTTGCTTGATTTGA---------------------GCTGTTATTGCCTTTGCTTTTCGATGTTGTTGTTTGTGCATTTCGTTTGTGT--------------------------------TTCAT----GCCCAAA---GTGA---ATTTAT-TC-TCAAGAACTAATCTGAAC------TTTCTCTTG-CTTAAT-TCCCT-----ATGCCATTGCCCACAATATACGA-TTCTAGATCTTGGCTAGAGCGTTT-----GGAA-----TGTATGTCA-AAG------------CGGTAATTC-------AAACATTTCTGTTGTGCACTCT--TCAA---------------------------------------------------------------------------ATATATATGATGCTATATATATCGTAGTCCTA-TATAAGTCGGCGATTAC----------------------------------TTAAAC--------------------------T--ATG-TATTC--CTCTCT------TCG----GAAACAGAAGCAGCAGATAACTTGGTCACCGTCATCACCGAACAGGAAATCGAGCCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGTCATCACCGAACAGGA..........2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CGGTAATTC-------AAACATTTCTGTTGTGCAC..................................................................................................................................................................................................................................................................................................2911.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGATCTTGGCTAGAGCGTTT-----.......................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGTCATCACCGAACAGGAAAT.......2411.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGAACAGGAAATCGAGCC.2111.001100000
droGri2
TCCGCCGCATTCCAGTTTGTTGCAAC---------------------------------------AGCACATGAATGGTGGGGAAATATCTTG-AAAA---TTAC---TTAATTCTTTTGAA----------TTTTTGTAC---T--------TTTCCTCAGTTT----------------------------------TTTCAGTTGGTTGATT------TGTTCTTC----------------------------------T-GTTA------------A----------------------------------------------------------------------------------------GATATGTAGATTAAA-------------------------------------A-----TTTTTTTT------AGAGCT----------------------CTTTTTGCT-------------T---T-TGATGTTGTT--T------GTACATTTGTGTTTGAA----AGCCAAA---CTCT---ATTTAA--TCCGAAAAACTAATATGAA------ATCTCTCTTG-CTTAAT-TCCCC------TGCCATTGCCCACCTA--ATGA-CCATAGATCTTGGCTAGAACGTTT-----GGAG-----TGTATGTCA-AAG------------CGGTAATGC-------AAACAACTATGTTGTCTTAAA---AAAATAAAACAGAAT-ATGA----------------------------------------------------------AAT-----------------------ATTTAAAAA------------TAATTACC------------------A--CAAATA--TCTGA-C--------------------------AAAATT-TATTTCCATGTCT------TTG----GAAACAGATGGCGCCACAAATTTGGTCACTGTTATAACGGAGCAGGAAATCGAGCCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACGGAGCAGGAAATCGAGC..2211.00110

Generated: 05/18/2015 at 07:22 PM