ID:

dsi_10606

 Coordinate:

2l:19101488-19101748 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.6 -18.4 -18.0

Flybase annnotation

exon [2l_19101749_19102112_+]; CDS [2l_19101749_19102059_+]; exon [2l_19101295_19101487_+]; CDS [2l_19101295_19101487_+]; intron [2l_19101488_19101748_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAGATGATTCAGAAGGGCTTTTTGCTGCAATCGACACATGGGAGACTGGGTGAGTTGAGCACAACAGCAGACGCTAAGTTCAGAAGAATAAAATAGTGAGAGAGAATAGGTCCAAGGAATCATTCCTCTGTGCTTCCCAGTAAAAATTACTACTTAATTCATTTGTTGAACAAACGCCCCTATTTGCATATTTACTTTGACAGAAACGAAATATGTTATCACTTTTCTACTACCTTTTTAGTGGTAAATTTAATGATCCCCTAACATCTAACATCCCAGTTCGACTAACAGATTCGCTTTTTGCCAACAGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATGTCCTCCGGCCTGGCG
**************************************************************************************************......(((((((.....((((.(((......))).)))).((((........))))...((((.....))))........)))))))((((((((..(((.....)))..)))))))).*********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M024
male body		 SRR902009
testis
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
...............................TCGACCCATGGGAGACTTGAT..................................................................................................................................................................................................................................................................................................................... 21 3 1 2.00 2 2 0 0 0 0 0 0 0
...GATGATTCAGAAGGGCTTTTTGC............................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................TTTACTTTGACAGAAACGAAATATGTT............................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
................................CGACCCATGGGAGACTTGAT..................................................................................................................................................................................................................................................................................................................... 20 3 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................GATGACCGCCTTCGTACTG.............................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................CTTCGTACTGTGCATTCTGGCCAT................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0
..................................................................................................GAGAGAGAATAGGTCCAAGGA.................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................CATCGGAGACTGGGAGACTT................................................................................................................................................................................................................................................................................................................ 20 3 1 1.00 1 0 0 1 0 0 0 0 0
......................................ATGGGAAACTGGGAGACTTGA.............................................................................................................................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 1 0 0 0 0 0
.........................................................................GCTAAGTTCGGAAGA................................................................................................................................................................................................................................................................................. 15 1 3 0.33 1 0 0 0 0 0 1 0 0
...................................................................................................................AGTAATCATTCCTCTGCGCCT................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................AGGGATGACGGCCTTCGG.................................. 18 2 3 0.33 1 0 0 0 0 0 0 1 0
.AAGGCGATCCAGAAGGGCTTT................................................................................................................................................................................................................................................................................................................................................... 21 3 7 0.29 2 0 0 0 2 0 0 0 0
..........................TGCAATCGACTCTTGGGAGG........................................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 1 0
......................................................................................................GAGAATAGGTCCAGG.................................................................................................................................................................................................................................................... 15 1 4 0.25 1 0 0 0 0 0 1 0 0
..............................................................................GTTCAGAAGTCTAAAA........................................................................................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 0 0 2
.....................................CATCGGAGACTGGGAGACT................................................................................................................................................................................................................................................................................................................. 19 3 12 0.08 1 0 0 1 0 0 0 0 0
.AAGATGACTAAGAAGAGCTT.................................................................................................................................................................................................................................................................................................................................................... 20 3 16 0.06 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AACATCACAGTCCGACGAA........................................................................ 19 3 19 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

GTTCTACTAAGTCTTCCCGAAAAACGACGTTAGCTGTGTACCCTCTGACCCACTCAACTCGTGTTGTCGTCTGCGATTCAAGTCTTCTTATTTTATCACTCTCTCTTATCCAGGTTCCTTAGTAAGGAGACACGAAGGGTCATTTTTAATGATGAATTAAGTAAACAACTTGTTTGCGGGGATAAACGTATAAATGAAACTGTCTTTGCTTTATACAATAGTGAAAAGATGATGGAAAAATCACCATTTAAATTACTAGGGGATTGTAGATTGTAGGGTCAAGCTGATTGTCTAAGCGAAAAACGGTTGTCCCTACTGGCGGAAGCATGACACGTAAGACCGGTACAGGAGGCCGGACCGC
***********************************************************************************************************************************************......(((((((.....((((.(((......))).)))).((((........))))...((((.....))))........)))))))((((((((..(((.....)))..)))))))).************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 O002
Head
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 M053
female body
...............................AGCTGGGTACCCTCTGAACTA..................................................................................................................................................................................................................................................................................................................... 21 3 1 14.00 14 14 0 0 0 0 0 0 0
...............................AGCTGGGTACCCTCTGAACT...................................................................................................................................................................................................................................................................................................................... 20 3 3 1.33 4 4 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATGAAAATCTCTTTGCTTTTTAC................................................................................................................................................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................GTGACACTAAGGGTCATTTGT...................................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................TTTTAATGATGAATTAAG........................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................ATGAAAGTCTCTTTGCTTTTTAC................................................................................................................................................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................GCAAGTCTTCTTATTTTATCAC...................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................................................................AGGGTCATTTTTAATGATGAATTAAGT....................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................TCTCGTATCCAGGTT..................................................................................................................................................................................................................................................... 15 1 3 0.33 1 0 0 0 0 0 1 0 0
......................................................................................CTTATTTGATCACTCTCG................................................................................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................................TTACAAGGGGATTGTA............................................................................................. 16 1 3 0.33 1 0 0 1 0 0 0 0 0
...........................................................................................TTTATCAGTCTCTCTT.............................................................................................................................................................................................................................................................. 16 1 3 0.33 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................CTAGCGGAAGCTTGGCACGT.......................... 20 3 5 0.20 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................AAATGATATTGTCTATGCTTT..................................................................................................................................................... 21 3 6 0.17 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................ACTAGCGGAAGCATG................................ 15 1 7 0.14 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................AGTGAAAAGACTATGGTAAAA......................................................................................................................... 21 3 9 0.11 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GGTCAAGCTGATGGT...................................................................... 15 1 11 0.09 1 0 1 0 0 0 0 0 0
.......................................................................................................TCGTAACCAGGTTCCTT................................................................................................................................................................................................................................................. 17 2 12 0.08 1 0 0 0 0 0 1 0 0
......................................................................................................................................AAGGGTTACTGTTAATGATG............................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 1
.....................................................................................................TCTTTTATCCAGGCTCC................................................................................................................................................................................................................................................... 17 2 12 0.08 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................AATTTGTTTGCGCGGAT.................................................................................................................................................................................. 17 2 13 0.08 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AGACTGTAGTGGCAAGCTG........................................................................... 19 3 13 0.08 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................CCTACTAGCGGAAGCTT................................. 17 2 14 0.07 1 0 0 1 0 0 0 0 0
...................................................................................................TATCTCGTAACCAGGTTCCT.................................................................................................................................................................................................................................................. 20 3 15 0.07 1 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................TGTAGTGTCAAGGTGAT......................................................................... 17 2 17 0.06 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GGTGAAGCTGATTGTGT.................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................ACTAGCGGAAGCTTGAGAC............................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................CTAGCGGAAGCTTGACA............................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:19101438-19101798 + dsi_10606 CAAGATGATTCAGAAGGGCTTTTTGCTGCAATCGACACATGGGAGACTGGGTGAGTTGAGCACA------------------------------------------------------------ACAGCAGACGC-----TAAGTTCAGAA------------------------------------------------------------------------------------GAATAAAATAGTGAGAGAGAA---TAGGTCCAAGGAATCATTCCTCTG---------------------------------------------------------TGCTTCC-CAGTAAAAATTACTACTTAATTC-------------AT--------------------------------------------------TTGTTGAACAAACGCCCCTATTT-GCAT---------------------ATTTACTT-----TGACAG-AAACGAAATATGTTATCACTTTTCTACTACCTTTTTAGTGGTAAATTTAATGATC--------------------------------------------------------------------------------------------------------------------------------CCCTAACA------------TCTAA----CATCCCAGTTCGACTAACAGAT-----TCGCTTTTT-GCCAACAGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATGTCCTCCGGCCTGGCG
droSec2 scaffold_7:3181133-3181522 + CAAGATGATTCAAAAGGGCTTTTTGCTGCAATCGACACATGGGAGACTGGGTGAGTAGAGTACAAACAAACA--CGCAATGCCTATTAAA--------------------------------TAGCAGCAGATAC------------AGAA------------------------------------------------------------------------------------GAATAAAATAGTGGGATAGAATAATAGTTACAAGGATTCTTTCCTTTG---------------------------------------------------------TGTTTCG-CAGTCTAAGCTACTACTTAATTTATT----------AT--------------------------------------------------TTGTTGAACAAACGCCCCTATTT-GCAT---------------------ATTTACTTTACTTTGACAG-AAACGAAATATGTTATCGCTTTTTTACTACCTATTTAGTGGTAAATTTAATGATC--------------------------------------------------------------------------------------------------------------------------------ACCTAACA------------TCTAA----AA-GTCAGTTCGACTAACAGAT-----TCGCTTTTT-TCCAACAGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATGTCCTCCGGCCTGGCG
dm3 chr2L:19566651-19567035 + CAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGACACATGGGAGGCTGGGTGAGTAGAGTACAG----ACACGCACAATGCCTATTAAA--------------------------------TAGCAGCAGATGT-----CTAATACATTA------------------------------------------------------------------------------------GAATAAAACAGTGGAATAGAA---TAGTTCCAAGGATCCATTTCTTGG---------------------------------------------------------TGCTTCC-CAGTCTAAGCTAGTACTTAATTTGTT----------AT--------------------------------------------------TTGTTGAACAAACGCCCCCATTTTCCAT---------------------ATTTACTTTAGT-------------------TTTATCGCTTTCTTACTATCTTTTTAGTAGTACATTTAATGATC--------------------------------------------------------------------------------------------------------------------------------ACCTAACAGGCAACAAAAATCCTAA----AA-GGC--ACTCACTAATAGAT-----TCCCTTCTC-GCCAACAGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATGTCCTCGGGACTGGCT
droEre2 scaffold_4845:4722689-4723182 - CAAAATGATTCAAAAGGGGTTTTTGCTGCAATCGACACATGGAAGGCTGGGTGAGTCCAGCACAA----AGA--CGCAGTGCCTGTTATAGA------------------------------TGCCAGCAGATGC-----TAGATTCAGAACTAAGTGA----------------------------------------------------------------------------------------------------TAGATCGTCGCATTCTTTTTCTTGTGTTTC-TTTCATACAATATTTAAAAGTTCATAAGCT----AAGCTATTAAAAGTTGTGTTTCC-CTGTTTAAGCTACCATTTTGTTTGTTAGAATATCAC----------------ACAACTA------------TTATTTTAACACAACAGTTTTTTATCGTACGCCCCTACCA-ACTT---------------------T-----TTTAGTTCGACATAAGGCGAACTATTTTATCGCTTTTTTACTATCTTTTTAGAGGTAAATTTAATGATCTTTAGAGAATCTGA-----------------------------------------------------------------------------------------TCTCGGTACTTAATATCGGCAA--CACCTTACA------------CCTAA----AG-AGA--ACTGACTAATAGAC-----TCGCTCTTC-GCCCACAGGAATGACCGCCTTCATACTGTGCATTCTGGCCATGTCCTCGGGCTTGGCG
droYak3 2R:6062995-6063423 + CAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGACACATGGGAGGCTGGGTGAGTATA---------------------------------------------------------------TAGCAACAGATGC-----TAGATTCAAAACTGAGTGA----------------------------------------------------------------------------------------------------TAGATCCTCGTATTCTTTTTTTTTTGTTCC----CATAAAATATTTAAAAGTTCATAAGTT----AAGCTATTCAAAGTTGTATTTCC-CTGTATAAGCTAC------------------------------------------ATTA------------GTATTTCAACACAACAGTTTTTTATCATACGCCCCTA-----CAA---------------------AATTACTTTAGTT--ACAATAGTCTAGCTATTTCATCGCATTTTTATTAACT-TTTAGCGGTAAA-----------------AAAGCCGTAA---------------------------------------------------AA-----------------------ACTTTAGCTTTCTCGGTATTTAATATTA-------GCCTAACA------------CCTAA----CA-GAA--ACTGACTAATATAC-----TCGCTCTTC-GTCAACAGGGATGACCGCCTTCATACTGTGCATTCTAGCCATGTCCTCGGGCTTGGCG
droEug1 scf7180000409752:564294-564646 + CAAAATGATACAAAAGGGGTTTTTGCTGCAATCAACTCATGGGAGGCTGGGTAAGTTGCAATTG-----ATA--GACAAGGCATACTAGAGACCGCAGGCTAATGGATGATTAAGTTTAAATCAGGAGTAGATTC------------AAAA------------------------------------------------------------------------------------G--------------------------TTTTAAAGAA--ATTTCTT--------------------------------------------------------------ACCTAAAGAAAAAGAAA--------------------------GCTTGGAAAACATTGT-ATTTGCAGAATATTGTAGATCAGAGAACTGGGGTGGTTAATTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCATTACCTTGCTA-------ATATGACTATTAAAATTACG---------------TAA--CTAA-ACC--CCCGATTAATCTAT-----TTGTTATTT-A-TTTCAGGAATGACTGCTTTTGTACTATGCATTCTTTCCATGTCATCCGGCGTGGCT
droBia1 scf7180000302408:478660-479036 + CAAAATGATACAGAAGGGGTTTTTGCTGCAATCCACACATGGCAAGCTGGGTGAGTAAAAC-AA-----ATA--GATAATGAAT-----A--------------------------------TGGCAGCAGATGC-----TAATATCAGTGGAA--AAATAGGTTGTTTAACTATTTTGGTTTTCAATGCAACGAAAACAATTATATTTTCTTCAATCGTTTTTCATTTTTGTAC--------------TATAA------------AACGAGTT-------------------------------------------------------------------TTTACG-CAGTTGATGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------TTCAAAAGTCATAAAGATATCAA-A-TTAATTTCTTATAACTATAGCTCTGCTC-------ATATGGGCATTACTTGTAAGA------------TCTGT----TG-AAC--AACGATTCATAAAT-----TCCCCATCT-ACCAACAGGAATGACCGCCTTTGTGCTATGCATTCTGGCCATGACCTCCGGCCTGGCG
droTak1 scf7180000415115:950629-950973 - CAAAATGATTCAGAAGGGGTTTCTGCTTCAATCCACACATGGGAGGCTGGGTGAGTAAAAAGCA-----ATA--AATAATGCTTATTATA--------------------------------TAGCAGAAGATTT-----ACATACAAGTT---------------------------------------------------------------------------------------AAAAACAATTT-AGATAA---CAATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACGATTCT-----------TGTTTTTA-----TTGAAAATTTTC-ACTTTTAAAAAT-------------------------------------------------------------TAG------------------------------------ATTATAACATACTTTTTTGGAAACACTTTTTCATAGTCTTAAAGCTACCTATATTTAATT--GTCTAACTAGAG--------------------------------AAGA------------ACTAT---TTA-AAC--ACCGACTCATAGAT-----TCCTTATTC-ACTAACAGGCATGACCGCTTTCGTACTGTGCATTCTGTCCATGTCCTCCGGCTTGCTG
droEle1 scf7180000491046:3398341-3398418 - CAAAATGATTCAAAAGGGGTTTCTGCTCCAGTCGACACATGGGAAGCTGGGTAAGTAAAAC-CAG----ACA-------------------------------------------------------AAAAGTGC-----TAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779863:38259-38318 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-GCCCGCAGGGATGACCGCTTTTATACTGTGCATTCTGGCCATGTCCTCCGGCGTGGCT
droFic1 scf7180000448570:3297-3374 + G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAACAAAT-----ACGTTAATC-TTTCGCAGGAATTACCGCATTCGTTCTATGCATTTTGTCCATGTCTTCCGGATTGGCT
droKik1 scf7180000302382:758669-758748 - CAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCAAT-----TCTCTATTAACTTTACAGGAATGACCGCCTTTATACTCTGCATTCTGGCCATGTCCTCCGGTTTGTCG
droAna3 scaffold_12916:12017480-12017541 - CAAGATGATCCAAAAGGGATTTCTGTTGCAATCCACTCACGGGAAACTAGGTAGGTTGAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droBip1 scf7180000396769:366552-366613 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-TCCCCTAGGGATGACAGCATTCGTACTCTGCATTCTTGCCATGACATCCGGATTATCT
dp5 4_group5:1156010-1156077 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGCTTC-CCCTACAGGTTTTACTGCATTTGTACTGTGCATACTGGCCATGACCTCTGGCCTGAGT
droPer2 scaffold_5:5563530-5563597 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGCTTC-CCCTACAGGTTTTACTGCATTTGTACTGTGCATACTGGCCATGACCTCTGGCCTGAGT
droWil2 scf2_1100000004521:4292347-4292413 - CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATA-ACCAACAGGTATGACAGCCTTCATACTGTGCCTTTTGTCCATGCTATCGGGTGTGAGT
droVir3 scaffold_12723:2956248-2956310 + CAAGATGATTCAGAAGGGTTTCATGCTGCAGACCACGCACGGCCGTTTGGGTAAGTGAG-CGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:6913227-6913282 - CAAAATGATACAGAAGGGATTTATGCTGCAGTCCGTTCATGGCAGATTGGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_6972:5479-5895 - AAAAATGATTCAAAAGGGATTTCTACTCAAGTCCACGCATGGCAAATTAGGTGAGTTGTA----------------------------------------------------------------GAAGCAGTAGTAGTAGTACACTCAGAAAAA--AAA-----------------------------------------------------------------------------------------------------------TCGCT----------------CTCAAATTTAGAAAATATAAAAATCTATAAACACGCCTACATATAAGAAAATATTTTTCT-AAGAATAAGAAA-----------------------------------------C-ATCTGCCCTAAATTGACAATTCCAAAAGTAAAGTATTTTATTTTAAATTTTTT-----CTAAATATTTTCTACTATTAAAAAGT---------------------------------------------------TTTAGAATTCAG-----------------AAACAAATAATGAAATTCAGTGTTATTATCTTTCTCTGAGTGTACTT------------------------------------------------------------C---------A--CATGCTACA------------TACATATGTA----A--ATAATCAAATTAATTTGATATTCCCTCC-CGCTGCAGGCTTGACTGCCTTCATACTCTGCCTCTTGGCCATGAGTTCCGGTTTGGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAAGATGATTCAGAAGGGCTTTTTGCTGCAATCGACACATGGGAGACTGGGTGAGTTGAGCACA------------------------------------------------------------ACAGCAGACGC-----TAAGTTCAGAA------------------------------------------------------------------------------------GAATAAAATAGTGAGAGAGAA---TAGGTCCAAGGAATCATTCCTCTG---------------------------------------------------------TGCTTCC-CAGTAAAAATTACTACTTAATTC-------------AT--------------------------------------------------TTGTTGAACAAACGCCCCTATTT-GCAT---------------------ATTTACTT-----TGACAG-AAACGAAATATGTTATCACTTTTCTACTACCTTTTTAGTGGTAAATTTAATGATC--------------------------------------------------------------------------------------------------------------------------------CCCTAACA------------TCTAA----CATCCCAGTTCGACTAACAGAT-----TCGCTTTTT-GCCAACAGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATGTCCTCCGGCCTGGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...GATGATTCAGAAGGGCTTTTTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTT-----TGACAG-AAACGAAATATGTT.....................................................................................................................................................................................................................................................................................................2711.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACCGCCTTCGTACTG..............................1911.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGTACTGTGCATTCTGGCCAT................2411.00100000000000100000
.......................................................................................................................................................................................................................................................GAGAGAGAA---TAGGTCCAAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
droSec2
CAAGATGATTCAAAAGGGCTTTTTGCTGCAATCGACACATGGGAGACTGGGTGAGTAGAGTACAAACAAACA--CGCAATGCCTATTAAA--------------------------------TAGCAGCAGATAC------------AGAA------------------------------------------------------------------------------------GAATAAAATAGTGGGATAGAATAATAGTTACAAGGATTCTTTCCTTTG---------------------------------------------------------TGTTTCG-CAGTCTAAGCTACTACTTAATTTATT----------AT--------------------------------------------------TTGTTGAACAAACGCCCCTATTT-GCAT---------------------ATTTACTTTACTTTGACAG-AAACGAAATATGTTATCGCTTTTTTACTACCTATTTAGTGGTAAATTTAATGATC--------------------------------------------------------------------------------------------------------------------------------ACCTAACA------------TCTAA----AA-GTCAGTTCGACTAACAGAT-----TCGCTTTTT-TCCAACAGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATGTCCTCCGGCCTGGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................TAAA--------------------------------TAGCAGCAGATAC------------AGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.....................TTTGCTGCAATCGACACATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
dm3
CAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGACACATGGGAGGCTGGGTGAGTAGAGTACAG----ACACGCACAATGCCTATTAAA--------------------------------TAGCAGCAGATGT-----CTAATACATTA------------------------------------------------------------------------------------GAATAAAACAGTGGAATAGAA---TAGTTCCAAGGATCCATTTCTTGG---------------------------------------------------------TGCTTCC-CAGTCTAAGCTAGTACTTAATTTGTT----------AT--------------------------------------------------TTGTTGAACAAACGCCCCCATTTTCCAT---------------------ATTTACTTTAGT-------------------TTTATCGCTTTCTTACTATCTTTTTAGTAGTACATTTAATGATC--------------------------------------------------------------------------------------------------------------------------------ACCTAACAGGCAACAAAAATCCTAA----AA-GGC--ACTCACTAATAGAT-----TCCCTTCTC-GCCAACAGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATGTCCTCGGGACTGGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........CAAAAGGGGTTTTTGCTGCAATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GCAATCGACACATGGGAGGCTGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTAA----AA-GGC--ACTCACTAA..............................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTCTGGCCATGTCCTCG.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CATGGGAGGCTGGGTGAGTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGTGCATTCTGGCCATGT..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCATTCTGGCCATGTCCTCGGG.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGCCTTCGTACTGTG............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGACCGCCTTCGTACT...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TTA------------------------------------------------------------------------------------GAATAAAACAGTGGAATAGAA---TAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCTGCAATCGACACATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...............................................TGGGTGAGTAGAGTACAG----ACACGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......................TTGCTGCAATCGACACATGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCTTCGTACTGTGCATTCTGGC...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AAAGGGGTTTTTGCTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA----AA-GGC--ACTCACTAATAGAT-----TCCC................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ATCGACACATGGGAGGCTGGGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTC-GCCAACAGGGATGACCGCCTT.....................................2611.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................ATAAAACAGTGGAATAGAA---TA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................ACATGGGAGGCTGGGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................GCTGCAATCGACACATGGGAGGCTGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................TAAA--------------------------------TAGCAGCAGATGT-----CTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................AATAGAA---TAGTTCCAAGGATCCATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATC--------------------------------------------------------------------------------------------------------------------------------ACCTAACAGGCAACAAAAA.........................................................................................................2611.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AAGATGATTCAAAAGGGGTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................GCAATCGACACATGGGAGGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTGCTGCAATCGACACATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTGCTGCAATCGACACATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droEre2
CAAAATGATTCAAAAGGGGTTTTTGCTGCAATCGACACATGGAAGGCTGGGTGAGTCCAGCACAA----AGA--CGCAGTGCCTGTTATAGA------------------------------TGCCAGCAGATGC-----TAGATTCAGAACTAAGTGA----------------------------------------------------------------------------------------------------TAGATCGTCGCATTCTTTTTCTTGTGTTTC-TTTCATACAATATTTAAAAGTTCATAAGCT----AAGCTATTAAAAGTTGTGTTTCC-CTGTTTAAGCTACCATTTTGTTTGTTAGAATATCAC----------------ACAACTA------------TTATTTTAACACAACAGTTTTTTATCGTACGCCCCTACCA-ACTT---------------------T-----TTTAGTTCGACATAAGGCGAACTATTTTATCGCTTTTTTACTATCTTTTTAGAGGTAAATTTAATGATCTTTAGAGAATCTGA-----------------------------------------------------------------------------------------TCTCGGTACTTAATATCGGCAA--CACCTTACA------------CCTAA----AG-AGA--ACTGACTAATAGAC-----TCGCTCTTC-GCCCACAGGAATGACCGCCTTCATACTGTGCATTCTGGCCATGTCCTCGGGCTTGGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................GATGC-----TAGATTCAGAACTAAGTGA----------------------------------------------------------------------------------------------------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTGTGCATTCTGGCC..................1911.0010100000
..................GTTTTTGCTGCAATCGACACATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGCCATGTCCTCGGGCTT....2311.0010000100
CAAAATGATTCAAAAGGGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCGCCTTCATACTGTGC...........................2111.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATACTGTGCATTCTG.....................1911.0010000100
droYak3
CAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGACACATGGGAGGCTGGGTGAGTATA---------------------------------------------------------------TAGCAACAGATGC-----TAGATTCAAAACTGAGTGA----------------------------------------------------------------------------------------------------TAGATCCTCGTATTCTTTTTTTTTTGTTCC----CATAAAATATTTAAAAGTTCATAAGTT----AAGCTATTCAAAGTTGTATTTCC-CTGTATAAGCTAC------------------------------------------ATTA------------GTATTTCAACACAACAGTTTTTTATCATACGCCCCTA-----CAA---------------------AATTACTTTAGTT--ACAATAGTCTAGCTATTTCATCGCATTTTTATTAACT-TTTAGCGGTAAA-----------------AAAGCCGTAA---------------------------------------------------AA-----------------------ACTTTAGCTTTCTCGGTATTTAATATTA-------GCCTAACA------------CCTAA----CA-GAA--ACTGACTAATATAC-----TCGCTCTTC-GTCAACAGGGATGACCGCCTTCATACTGTGCATTCTAGCCATGTCCTCGGGCTTGGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATACTGTGCATTCTAGCC..................2211.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATACTGTGCATTCTAGCCT.................2311.00100100000000
.......................TGCTGCAATCGACACATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.....................TTTGCTGCAATCGACACATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGCCATGTCCTCGGGC......2511.00100100000000
droEug1
CAAAATGATACAAAAGGGGTTTTTGCTGCAATCAACTCATGGGAGGCTGGGTAAGTTGCAATTG-----ATA--GACAAGGCATACTAGAGACCGCAGGCTAATGGATGATTAAGTTTAAATCAGGAGTAGATTC------------AAAA------------------------------------------------------------------------------------G--------------------------TTTTAAAGAA--ATTTCTT--------------------------------------------------------------ACCTAAAGAAAAAGAAA--------------------------GCTTGGAAAACATTGT-ATTTGCAGAATATTGTAGATCAGAGAACTGGGGTGGTTAATTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCATTACCTTGCTA-------ATATGACTATTAAAATTACG---------------TAA--CTAA-ACC--CCCGATTAATCTAT-----TTGTTATTT-A-TTTCAGGAATGACTGCTTTTGTACTATGCATTCTTTCCATGTCATCCGGCGTGGCTSizeHit CountTotal NormTotal
No Reads
droBia1
CAAAATGATACAGAAGGGGTTTTTGCTGCAATCCACACATGGCAAGCTGGGTGAGTAAAAC-AA-----ATA--GATAATGAAT-----A--------------------------------TGGCAGCAGATGC-----TAATATCAGTGGAA--AAATAGGTTGTTTAACTATTTTGGTTTTCAATGCAACGAAAACAATTATATTTTCTTCAATCGTTTTTCATTTTTGTAC--------------TATAA------------AACGAGTT-------------------------------------------------------------------TTTACG-CAGTTGATGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------TTCAAAAGTCATAAAGATATCAA-A-TTAATTTCTTATAACTATAGCTCTGCTC-------ATATGGGCATTACTTGTAAGA------------TCTGT----TG-AAC--AACGATTCATAAAT-----TCCCCATCT-ACCAACAGGAATGACCGCCTTTGTGCTATGCATTCTGGCCATGACCTCCGGCCTGGCGSizeHit CountTotal NormTotal
No Reads
droTak1
CAAAATGATTCAGAAGGGGTTTCTGCTTCAATCCACACATGGGAGGCTGGGTGAGTAAAAAGCA-----ATA--AATAATGCTTATTATA--------------------------------TAGCAGAAGATTT-----ACATACAAGTT---------------------------------------------------------------------------------------AAAAACAATTT-AGATAA---CAATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACGATTCT-----------TGTTTTTA-----TTGAAAATTTTC-ACTTTTAAAAAT-------------------------------------------------------------TAG------------------------------------ATTATAACATACTTTTTTGGAAACACTTTTTCATAGTCTTAAAGCTACCTATATTTAATT--GTCTAACTAGAG--------------------------------AAGA------------ACTAT---TTA-AAC--ACCGACTCATAGAT-----TCCTTATTC-ACTAACAGGCATGACCGCTTTCGTACTGTGCATTCTGTCCATGTCCTCCGGCTTGCTGSizeHit CountTotal NormTotal
No Reads
droEle1
CAAAATGATTCAAAAGGGGTTTCTGCTCCAGTCGACACATGGGAAGCTGGGTAAGTAAAAC-CAG----ACA-------------------------------------------------------AAAAGTGC-----TAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-GCCCGCAGGGATGACCGCTTTTATACTGTGCATTCTGGCCATGTCCTCCGGCGTGGCTSizeHit CountTotal NormTotal
No Reads
droFic1
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAACAAAT-----ACGTTAATC-TTTCGCAGGAATTACCGCATTCGTTCTATGCATTTTGTCCATGTCTTCCGGATTGGCTSizeHit CountTotal NormTotal
No Reads
droKik1
CAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCAAT-----TCTCTATTAACTTTACAGGAATGACCGCCTTTATACTCTGCATTCTGGCCATGTCCTCCGGTTTGTCGSizeHit CountTotal NormTotal
No Reads
droAna3
CAAGATGATCCAAAAGGGATTTCTGTTGCAATCCACTCACGGGAAACTAGGTAGGTTGAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................GTTGCAATCCACTCACGGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
CAAGATGATCCAAAAGGGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droBip1
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-TCCCCTAGGGATGACAGCATTCGTACTCTGCATTCTTGCCATGACATCCGGATTATCTSizeHit CountTotal NormTotal
No Reads
dp5
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGCTTC-CCCTACAGGTTTTACTGCATTTGTACTGTGCATACTGGCCATGACCTCTGGCCTGAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-CCCTACAGGTTTTACTGCA.......................................2111.0010100000000
droPer2
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGCTTC-CCCTACAGGTTTTACTGCATTTGTACTGTGCATACTGGCCATGACCTCTGGCCTGAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATA-ACCAACAGGTATGACAGCCTTCATACTGTGCCTTTTGTCCATGCTATCGGGTGTGAGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCTATCGGGTGTG...1911.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATACTGTGCCTTTTGTCCATGCTAT...........2811.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTTGTCCATGCTATCGGGT......2311.00100010
droVir3
CAAGATGATTCAGAAGGGTTTCATGCTGCAGACCACGCACGGCCGTTTGGGTAAGTGAG-CGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................GCAGACCACGCACGGCCGTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
........TTCAGAAGGGTTTCATGCTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...GATGATTCAGAAGGGTTTCATGCTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000001000
.....TGATTCAGAAGGGTTTCATGCTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
CAAAATGATACAGAAGGGATTTATGCTGCAGTCCGTTCATGGCAGATTGGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
CAAAATGATACAGAAGGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droGri2
AAAAATGATTCAAAAGGGATTTCTACTCAAGTCCACGCATGGCAAATTAGGTGAGTTGTA----------------------------------------------------------------GAAGCAGTAGTAGTAGTACACTCAGAAAAA--AAA-----------------------------------------------------------------------------------------------------------TCGCT----------------CTCAAATTTAGAAAATATAAAAATCTATAAACACGCCTACATATAAGAAAATATTTTTCT-AAGAATAAGAAA-----------------------------------------C-ATCTGCCCTAAATTGACAATTCCAAAAGTAAAGTATTTTATTTTAAATTTTTT-----CTAAATATTTTCTACTATTAAAAAGT---------------------------------------------------TTTAGAATTCAG-----------------AAACAAATAATGAAATTCAGTGTTATTATCTTTCTCTGAGTGTACTT------------------------------------------------------------C---------A--CATGCTACA------------TACATATGTA----A--ATAATCAAATTAATTTGATATTCCCTCC-CGCTGCAGGCTTGACTGCCTTCATACTCTGCCTCTTGGCCATGAGTTCCGGTTTGGCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:17 PM