ID:

dsi_10583

 Coordinate:

3r:13586626-13586917 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-52.8 -52.7 -52.6

Flybase annnotation

exon [3r_13586918_13587432_+]; CDS [3r_13586918_13587432_+]; CDS [3r_13586289_13586625_+]; exon [3r_13586210_13586625_+]; intron [3r_13586626_13586917_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAACTACGCCACGTTGATGCTAAGGATCAGCATAGATGTGGAGCTCACTGGTAGGTCTTCCCCCTGGGGACGAGACATTCCCCATGTTATGACCATAGAATCTGACAATTTCCACAATCTGTCGCCGAAGAAGTCGCCATAATTGGAGGCCTTTTTTCCGCGTAGACTGGCGATAAGTAGTATCTTCAATTTATTTATAGCCAGTTCACTACTAATGCCTGCCGTTTGGGTCATTTGCCAGCAATAGCAAGTGCATGTCCAACAATAATTAGCTTCTGAGCCAAATGGTTTTGTTGTGAATATTTCAACTAACGAGCTTTTAAATTCCGATCTCTCAACTAGACAAGAGCACCAAACTGGTCTGCTTCATGCTGAAGGTTCCGCACAACACC
**********************************************************************************************************......(((((((((.(((.(((((((((.(((....))).)))..)))))).))))))((((((.((((((((..........)))))))).))))))...............(((((((((.(((...(((((((........))).))..............))...))).)))))))))...))))))...............................*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
.................................................................................................................................................................................................................TACTAAAAACTGCCGTTTGGGTC................................................................................................................................................................ 23 3 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0
...................CTAAGGATCAGCATAGATGTGGAGCT........................................................................................................................................................................................................................................................................................................................................................... 26 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
AAACTACGCCACGTTGATGCTACGGATC............................................................................................................................................................................................................................................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
AAACTACGCCACGTTGATGCTAAGGAT............................................................................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................AGCATAGATGTGGAGCTCACTGACA................................................................................................................................................................................................................................................................................................................................................... 25 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................TGCTAAGGATCAGCATAGATGTGGAGCT........................................................................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................AGCATAGATGTGGAGCTCACTGACAAG................................................................................................................................................................................................................................................................................................................................................. 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
AAACTACGCCACGTTGATGCTAAG................................................................................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................CATGCTGAAGGTTCCGCA....... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.AACTACGCCACGTTGATGCT................................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................CGATATCTCAACTAGA................................................. 16 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................ATTTCAACTAACGAGCTTTTAAATTCCG............................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................AATTTCCACAATCTGTCGC........................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................ACTGACAAGAGCACCAAACTGGT............................... 23 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................ATAAGTAGTATTCTCAAGTTA....................................................................................................................................................................................................... 21 3 4 0.50 2 0 0 2 0 0 0 0 0 0 0 0
.........CGCGTTTATGCTAAGGAT............................................................................................................................................................................................................................................................................................................................................................................. 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.................................AGGTGTGGAGCTGACTGGT.................................................................................................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
...............................GTAGGTGTGGAGCTGACTGGT.................................................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
................................AAGGTGTGGAGCTTACTGGT.................................................................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................CTGGCGATAGGTAGT................................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................GATAAGTAGTATTCTCAAGT......................................................................................................................................................................................................... 20 3 12 0.17 2 0 0 0 0 2 0 0 0 0 0 0
...........................................................................................................................................................................GATAAGTAGTATTCTCA............................................................................................................................................................................................................ 17 2 13 0.15 2 0 0 0 0 0 0 0 0 2 0 0
................................................................................................................................................................................................................................................................GTCTAACAATAATCAGATTCT................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................TTCGCTACTAATGCCTC........................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0
...................................................TAAGTATTCCACCTGGGGA.................................................................................................................................................................................................................................................................................................................................. 19 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0
AACCCACGCCACGTTGA....................................................................................................................................................................................................................................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1
.............................................................CCTTGGGGACGAGACG........................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................AGAAAGTTCATGTCCAA.................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
....................................GGTGTAGCTCACCGGTA................................................................................................................................................................................................................................................................................................................................................... 17 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

TTTGATGCGGTGCAACTACGATTCCTAGTCGTATCTACACCTCGAGTGACCATCCAGAAGGGGGACCCCTGCTCTGTAAGGGGTACAATACTGGTATCTTAGACTGTTAAAGGTGTTAGACAGCGGCTTCTTCAGCGGTATTAACCTCCGGAAAAAAGGCGCATCTGACCGCTATTCATCATAGAAGTTAAATAAATATCGGTCAAGTGATGATTACGGACGGCAAACCCAGTAAACGGTCGTTATCGTTCACGTACAGGTTGTTATTAATCGAAGACTCGGTTTACCAAAACAACACTTATAAAGTTGATTGCTCGAAAATTTAAGGCTAGAGAGTTGATCTGTTCTCGTGGTTTGACCAGACGAAGTACGACTTCCAAGGCGTGTTGTGG
***************************************************************......(((((((((.(((.(((((((((.(((....))).)))..)))))).))))))((((((.((((((((..........)))))))).))))))...............(((((((((.(((...(((((((........))).))..............))...))).)))))))))...))))))...............................********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
.......................CCTAGTCGTATCTACACCTCGA........................................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................CCTGACCGCTATTCATCA................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................CTCGGGTGACCATCCAGGAG............................................................................................................................................................................................................................................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........GGTGCAACTACGATTCCTAGT........................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CCGGACGGCTAACCCAGTAAT............................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................AAATTTTAGGCTAGAGATTTGAT................................................... 23 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................AAAAATTTAGGCTAGAGATTTGAT................................................... 24 3 4 0.50 2 0 0 0 0 0 2 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................CGAAGTACGAATTTCTAGGC......... 20 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................AGCGATGAGTACGGACG.......................................................................................................................................................................... 17 2 13 0.23 3 0 1 0 0 0 0 0 2 0 0
............................................................................................................................................................................................................AAGCGATGAGTACGGAC........................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................GGCCGGCAAACCCAG................................................................................................................................................................ 15 1 10 0.10 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................................................................................................GGTTTGACAAGACGA.......................... 15 1 12 0.08 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................................................................................AAAGGCTAGAGATTTGAT................................................... 18 2 15 0.07 1 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................GGCAAACCCAGTAGGGGGT........................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:13586576-13586967 + dsi_10583 AAACTACGCCACGTTGATGCTAAGGATCAGCATAGATGTGGAGCTCACTGGTAGGTCTTCCCC---------------------------------------------CTGGGGACGAGACATTCCCCATG-----TTATGACCATAG----------------------------------AATCTGACAATTTCCACAATCT-GTCGCCG-----------------AA--G----------AAGTCGCCATAATTG-GAGGCCTTTTTTCCGCGT--AGACTG---GCGATAAGTAGTATCTTCAATTTAT-T--TATAGC------CAGTTC--------ACTACTAATGCCTGCCG--------------------TTTGGGTCATTTGCCA---GCAATAGCAAGTGCATGTCCAACAATAATT-------------------------------------------------------------------------------------------------------AGCT-----------------------------------------TCTGA--------------------------GCCAAATGGTTTTGTTGTGAATATTTCAACTAACGAG----CTTTT--------A--AATTCCGAT-CTCTCAACTAGACAAGAGCACCAAACTGGTCTGCTTCATGCTGAAGGTTCCGCACAACACC
droSec2 scaffold_0:14451918-14452309 + AAACTATGCCACGTTGATGCTAAGGATCAGCATAGATGTGGAGCTCACTGGTAGGTCTTCCCC---------------------------------------------CTGGGGACGAGACATTCCCCATG-----TCATGACCATAG----------------------------------AATCTGATAATTTTCACAATTT-GTCGCCG-----------------AA--G----------AAGGCGCCATAATTG-GAGGCCTTTTTTCCGCGT--AGACTG---GCGATAAGTAGTATCTTCAATTTAT-T--TATAGC------CAGTTC--------ACTACTAATGCCTGCCG--------------------TTTGGGTCATTTGCCA---GCAATAGCAAGTGCATGTCCAACAATAATT-------------------------------------------------------------------------------------------------------AGCT-----------------------------------------TCTAA--------------------------GCCAAATGGTTTTGTGGTGAATATTTCAACTAACGAG----CTTTA--------A--AATTCCGAT-CTCTCAACTAGACAAGAGCACCAAACTGGTCTGCTTCATGCTGAAGGTTCCGCACAACACC
dm3 chr3R:7513098-7513486 - AAACTATGCCACGTTGATGCTCAGGATCAGCATAGATGTGGAGCTAACTGGTAGGTCTTCCCC---------------------------------------------C-GGGGACGACTCATTCCCCATG-----TTATGACCATAG----------------------------------AATTTGATAATTTTCACAATCTGTTTGGTT-----------------TT--C----------ACAATC---TAATTG-GAGAACTTTTTTTGGTGT--AGACTG---GCGATAAGTAGTATCTTCAATTTAT-T--TATAGC------CAGTAC--------AATATCAATGCCTGCCG--------------------TTTGGGTCATTTGCCA---GCAATAGCAAGTGCATGTCCAACAATAATT-------------------------------------------------------------------------------------------------------ACCT-----------------------------------------TCCAA--------------------------GTCAAATGGTTTTGTGGTGAATATTTCAACTAACGAG----CTTTC--------A--AATTCCGAT-CTCTCAACTAGACAAGAGCACCAAACTGGTCTGCTTCATGCTGAAGGTTCCGCACAACGTC
droEre2 scaffold_4770:14105054-14105443 + AAACTATGCCACGCTCATGCTAAGGATCAGCATAGATGTGGAGCTCACTGGTAGGTTTTCCCC---------------------------------------------T--AGGACGAGACATTTCCCATG-----TTAGGGCCGAGA----------------------------------AATCTGAGAACTTCCGTAATCT-GCCGCCC-----------------TT--T----------AAGGCGCCATAATTG-GGAGACATTTTTACGCAT--AGACTG---GCGATAAGTAGTATCTTCAATTTAT-T--TATAGC------CAATAC--------ACTATTATTGCTTGTTG--------------------TTTTGGTCATTTAACA---GCAATAACAAGTGCATGTCCGACAATAGTT-------------------------------------------------------------------------------------------------------AGCT-----------------------------------------TACAA--------------------------GCCAAATGGTATTGTGGTGGGTATTTCAACTAATGAG----TTTTT--------A--AATTCCGAT-CTCTCAACCAGACAAGAGCACAAAACAGGTCCGCTTCATGATGAAGGTTCCGCACAACACC
droYak3 3R:16908226-16908559 + AAACTATGCCACGCTGATGCTAAGGATCAGCATAGATGTGGAGCTCACTGGTAGGTGCTCCTC-------------------C-------------------------CCTAGGACGTGACATTCCCCATG-----------------------------------------------------------------------------------------------------------------AAGGCCCCATAATTG-G---------------GT--AGCTTG---GCGATAAGTAGTATCTTCATTGTAT-T--TATAGC------CAGCAC--------ACTATTATTGCTTGTTG--------------------TTTGGGTCATTTTCCA---GCAATAGCAAGTGCATGTGCAGCAATAGTT-------------------------------------------------------------------------------------------------------AGCT-----------------------------------------TACTA--------------------------CCCAAATGCTATTACAGTGAATATTTCAACTAACGAG----TTTTC--------C--AATTACGAT-CTCCCAACCAGACAAGAGCACCAAACTGGTCTCCTTCATGATGAAGGTTCCGCACAACACA
droEug1 scf7180000409797:1151710-1152088 - AAACTATGCCACTTTAATGCTGAGGATCAGCATAGATGTGGAACTGACTGGTGAGTCGTCTTA-------------------TGCATTGACAA--------------------------ATATGCTCTAT-----------------A----------------------------------AACTTGATAAAATGCCTAATCTTTGTG-CC-----------------TA--G----------AAAACGCAATAAA---AA-GGCTTTTATTCGTGT--AGACTG---GCGATAAGTAGTATCTTCAATTTAT-T--TATAGC------CAGTACCTACCTGGACAATAAATGTTTGTTG--------------------TTTGAATCATTTCCCG---ACAATACCAAGTGCATGTCGAATACTAATT-------------------------------------------------------------------------------------------------------ATCT-----------------------------------------TTTAA------------------T-------GCCAAAC------ATAACAAAAACTTTGAATAACAAG----TTTTT-----------AATTCCGAT-CTCACCGCCAGACAAGAGCACCAAACTGGTCTCCTTCATGATGAAGGTTCCCCACAAAACT
droBia1 scf7180000302113:3371105-3371487 - AAACTATGCCACCCTCATGCTGAGGATCAGCATAGATGTGCAGCTCACTGGTGAGTCTTCGCC-------------------AG----------------------------CAAAGACATACTT---TTG-----TT--------------------------------------------AACCCAAGAAAATACACTATCTTGTCGCCC-----------------TA--G----------AAAGCGCCATAAATA-GG-CGCTTTCATTGGAATCGAAAAGT---TTGATAAGTAGTATCTACAACTCAT-T--TATAGCCCGGGCCAGTGC--------ACAATAAATGCTTGTTG--------------------TTTGGGTCATTTTCCA---ATAATAGCAAGTGCATGTCCAAAGACAATT-------------------------------------------------------------------------------------------------------AGCT-----------------------------------------TCTA----------------------------TCGAAAGGTGTTATCGTTCATATTTCATATAACGAG----TTTTT--------A--AAACCCGAT-CTGTCTGCTAGATAAGAGCACCAAACTGGTCTCCTTCATGATGAAGGTTCCGCACAAAACG
droTak1 scf7180000410579:163360-163719 + AAACTATGCCACGCTTATGCTGAGGATCAGTATAGATGTAGAGCTCACTGGTGAGTTTTCTCT---------------------------------------------T----------ACATATTCCATG-----TCTTGT-----T----------------------------------AGCCCGATAGAATGCACAATCTTGTCGGCC-----------------TA--G----------AAAGCCCCATAAATG-AG-GGCATTTATTTGTAT--AGAAGT---TTGATAAGTAGTATCTTCAATTCAT-T--TATAGC------CAGTAA--------ACAATAAATGCTTGTTG--------------------TTTGAGTCATTTTTCA---ATAATAGCAAGTGCATGTCCAACGGTAATT------------------------------------------------------------A--------------------GATTGGCTGTATG-----------------------------------------------------------------------------------------------------------ATTTCAACTAACGAG----TTTCC--------A--AAACCCGAT-CTCACCGCCAGATAAGAGCACCAAACTGGTCTCCTTCATGATGAAGGTTCCGCACAAAACT
droEle1 scf7180000491080:2175121-2175514 + GAACTATGCCACTCTGATGCTGAGGATCAGCATAGATGTGGAGCTAATTGGTGAGTTAGCTGA--G-----------------TTTTCGGCAA-A-----------------AAAGG----------------------------AAG----------------------------------TACTTGACCAAATGCACAATCTTGCCTTTC-----------------TA--G----------AAAAGGCCATAGAAA-AA-GGATTATATTCGTGT--CGCTTG---GCGATAAGTAGTATCTCAACTTTAT-T--TATGAT------CAGTGC--------ACAATAAATGCCTGCTG--------------------TTTGGGTCATTTTTTA------ATAACAAGTGCATGTCACCTAATAATT-------------------------------------------------------------------------------------------------------AACC-----------------------------------------TGCAACCAGCTG---AACGGAAATGCCAAT------CTGGTGATATAGTAAACATAGCAAGTAACCAA----ATTTT-----GTTT--TATTTTAAC-CCATTTGCCAGACAAGAGCACCAAACTGGTCTCCTTCATGATGAAGGTACCACACAAAACG
droRho1 scf7180000779338:134053-134412 + AAACTACGCCACTCAAATGCTGAGGATCAGCATAGATGTGGAACTCACTGGTGAGTATTTTGT--------------------------------------------------------------------------TAAGGTTCAAC----------------------------------TAGCTGACGAAATCCA-----------------------------------------------------------TGCAGGGCTTTTTATTTAAGA--CACTTG---GCGATAAGTAGTATCTCGAACTTAT-T--TATAGC------CAGTAC--------ACAATAAATACTTGCTG--------------------TTTGGTTCATTTTCCA---ATTATAGCAAGTGCATGTCCCACAATAATT-------------------------------------------------------------------------------------------------------AACT-----------------------------------------TCTAACCAGCTTTTAGCCAA---TGCTAAACGTAAAATGGT---ATAGTAATTATATCAAATAACTAG----TTTTT--------T--TATTTCGAT-CTCTCCGCTAGACAAGAGCACCAAACTGGTCTCCTTCATGATGAAGGTACCACATAAAACT
droFic1 scf7180000453488:313273-313617 + AAATTATGCCACTTTAATGCTGAGGATCAGCATAGATGTGGAACTCACTGGTGAGTCTTCTACGAAGTAGATATATACTGCA----TTG-TAAAGAATT-CCTAGAT--------------------------------------AACTAGCTGAAGAATTGCATAAGCTTGCC--------GACCCAAAA--------------------------------------CA--A----------AAAGCGCAATAAATG-AA-GGCTTTTATTTGAGT--CGTCTG---GCGATAAGTAGTATCTCCACTTTAT-T--TATAGG------AACAAC--------ACAATAAATGCTTGTTG--------------------CATGGGTCACTTTACA---ATAATAGCAAGTGCATGTCCCATAAAAATT-------------------------------------------------------------------------------------------------------TGCT-----------------------------------------A---------------------------------------------------------------------------------------------------TTGTTTCAGATAAAAGCACCAAACTGGTCTCCTTTATGATGAAGGTTCCCCACAGGACT
droKik1 scf7180000301923:215995-216365 - AAACTATGCCACTCTTATGCTGAGGATCACAATCGATGTGGAGCTTACTGGTGAGTGCCGTGGAA-----------------GG-GTCA-AGACAATAGATAG--------------------------------------------------------------------------------AGTGGCCTGAATGCACAATCTTTCTC-----------------------------------------CCATATAAG-GA-GCCTTTTATACGTGC--GGGCTAGCAGCGATAAGTAGTATCTTTAGTTTAT-T--TATAGC------CAGTAG--------ACAATAAATGCTTGTTA--------------------TGTGTGTCATTTAATT---TTGATAGCAAGTGCATGTCTAAAAATAATG-------------------------------------------------------------------------------------------------------GGTT-----------------------------------------AATAACAAGCTA---ATCAGATTTAAAAAA------CAA-------GCGAAATATTTCCGCTAACCAG----T------------------TCCGATCTCCCTATCTAGACAAAACCACCAAAACGGTGGCCTTTATGATGAAGGTTCCCCACAAAACT
droAna3 scaffold_13340:13978275-13978624 - AAACTATGCCACTCTGATGCTAAGAATCAGCATAGATGTCGAACTTACTGGTAAGCTGGTTAA-------------------AATTTTA-AAAATA----TATAGCGT-------------CCA-----AAC-----CAA----------------------------------ATAAACACCAAT---TGAAATGAATTATCTAGCTGGTC------------------A--GGTAACACGAT--------ATTTTT------------------GT--AGA--A---CTGATAAGCGGTATCGCAATTTTCTATTATATTGG------TTTCAA--------ACAATAAAAGTTCG-----------------------TGTTAATCATCGCACA---ATAATAGGAACTCTTTATCAAACA------------------------------------------------------------TGTT---------------------------------------------------------------------------------------------------------------------------------------------ATATTTTAACTA-CGAGACTAATTGT-----TT-TT-CCCTCTACC-CCCTGACACAGACAAATCCAGCAAGCAGGTCTCGTTCATGATGAAGGTTCCGCATGATACC
droBip1 scf7180000395971:1168568-1168934 + AAACTATGCCACTCTGATGCTCAGGATCACCATTGATGTCGAGCTTACTGGTAAGCTGTTGAA-------------------AA-TCGA-AAAATATACATATAGCTC-------------CCA-----TAGCAAGTCAA----------------------------------ACAAACACCAAT---TGAAATGCATTATCTAGCTGCCA-----------------CACAGGTAACCCGAT--------ATTTTA------------------GG--AGA--A---CCGATAAGCGGTATCAGAAATTTAT-T--TCTGAT------T-TCAA--------ACAATAAAAGTTCGTGT-----------------------TATTCATGGCACA---ATTATAGACATTCTTTATCTATC-------------------------------------------------------------------A--------------------AACCAGCTATATT---------------------------------------------------------------------------------------------------------ATATTTCGACTA-CAAG----CTTCCATTGTTT-TT-A-CCTCACCCTCCCCACACAGACAAGACCACCAAGCAGGTCTCTTATATGATGAAGGTTCCACACGACACT
dp5 2:25853503-25853932 + GAACTACGCCACTCTGATGCTGAGAATCAGCATCGATGTGGAGCTCGATGGTGAGTACTACCTGAGCTCGATATAAACGTAC----CTA-AAAATAGAT-TATAGCCT-------------ACA-----ACTCACGATAC----------------------------------GTAATTACTGTTTGTTGGTGTTTGTGTTCGGTTCGGACTGCGATAACTAATCGTA--------------------------------------------------------------------AAATATCTTCAATTTAC-C--TATAAC------ATTGGC--------ACAATAAAAGTCCGCTG--------------------TTGG---TATTTCACAATGATAATAGGTATTGCTTGCCGAAGC------------------------------------------------------------TGGCTCG--------------------CATTAGCCATCTAACAATGACTGACCAATTTGATTGTACTTGAAGGTGCAATGTAATTAGAGTAGTTTTTCA--------------------------GGCAAATATTCTTTCGTTACATA----------------------------------TCGCCTTTT-CCCTTTTCCAGACAAAAGTACTAAGCACAAATCCTTCATGATGAAGGTGCCCCATAACACC
droPer2 scaffold_6:1081516-1081945 - GAACTACGCCACTCTGATGCTGCGAATCAGCATCGATGTGGAGCTCGATGGTGAGTACTACCTGAGCCCGATATAAACGTAC----CTA-AAAATAGAT-TATAGCCT-------------ACA-----ACTCACGATAC----------------------------------GTAATTACTGTTTGTCGGTGTTTGTGTTCGGTTTGGACTGCGATAACTAATCGTA--------------------------------------------------------------------AAATATCTTCAATTTAC-T--TATAAC------ATTGGC--------ACAATAAAAGTCCGCTG--------------------TTGG---TATTTCACAATGATAATAGGTATTGCTTGCCGAAGC------------------------------------------------------------TGGCTCG--------------------CATTAGCCATCTAACAATGACTGACCAATTTGAGTGTACTTGAAGGTGCAATGTAATTAGAGTAGTTTTTCA--------------------------GGCAAATATTCTTTCGTTACATA----------------------------------TCGCCCTTT-CCCTTTTCCAGACAAAAGTACTAAGCACAAATCCTTCATGATGAAGGTGCCCCATAACACC
droWil2 scf2_1100000004902:6778296-6778722 + GAACTATGCAACGTTAATGCTGAGAGTAACTATCGACGTCGAGCTTACGGGTAAAGTACTCGA--------TGCAAATA----G---TA-TAAGTAAAT-TTTTGTTG---------TCAGATCACTGATG-----TC-----------------------------------------------------ACTTCCATA---------------------------------------------GTGCGCCATGGC--------------------------TTGCCCTTGACCAATTGTATCTATAATTGCT-T--TATAACTATATTGATTGC--------CAGATATGTACCTACGGTTTATATATAGCTCATTTATTTTGGGTTATTTCACC---ATAC-------------TCCAGCAATAATTGGCATAGCAAAACAAAACATTGCTAAAGCACTTCTCTGATAAGTTTAGCGACAATGGGTGACAGCAGTTATTGATCGATCAA-----ATATTTG-----------------------------------------------------------------------------------------------------------GTTAAAGCTAAA--G----CTTAT--------ACACCTCTTGA--TATTCTCTTAGATAAACAGACGAAAAATGTTTCCTACATGATGAAAGTTGCCCACGACTCA
droVir3 scaffold_12855:5448946-5449008 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTTTCGACTAGACAAAACCGTCAAGCCCATTTCTTATATGATGAAAGTGCCCCACGACTCG
droMoj3 scaffold_6540:5767511-5767615 - TTT--------------------------------------------------------------------------------------------------------------------------TATACG-----GAATGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATAATATGAT----TATTT--------T--GGCTACAAT-TTTAAAATTAGATAATACCATCAAACATAATTCATTTATGATGAAAGTACCGCACGACTCT
droGri2 scaffold_14906:8543856-8543966 + A-----------------------------------------GCTAACTGGTTAGTGCGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACATTTCAAATTTTG--------TCT--------T--AAGTCCTTC-TCCCCCTCAAGATAAAACCATAAAGCCCATGTCCTTTATGATGAAGGTACCACACGAGTCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAACTACGCCACGTTGATGCTAAGGATCAGCATAGATGTGGAGCTCACTGGTAGGTCTTCCCC---------------------------------------------CTGGGGACGAGACATTCCCCATG-----TTATGACCATAG----------------------------------AATCTGACAATTTCCACAATCT-GTCGCCG-----------------AA--G----------AAGTCGCCATAATTG-GAGGCCTTTTTTCCGCGT--AGACTG---GCGATAAGTAGTATCTTCAATTTAT-T--TATAGC------CAGTTC--------ACTACTAATGCCTGCCG--------------------TTTGGGTCATTTGCCA---GCAATAGCAAGTGCATGTCCAACAATAATT-------------------------------------------------------------------------------------------------------AGCT-----------------------------------------TCTGA--------------------------GCCAAATGGTTTTGTTGTGAATATTTCAACTAACGAG----CTTTT--------A--AATTCCGAT-CTCTCAACTAGACAAGAGCACCAAACTGGTCTGCTTCATGCTGAAGGTTCCGCACAACACCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................CTAAGGATCAGCATAGATGTGGAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00201100000000000000
AAACTACGCCACGTTGATGCTAAGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.................TGCTAAGGATCAGCATAGATGTGGAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
AAACTACGCCACGTTGATGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTGAAGGTTCCGCA.......1811.00101000000000000000
.AACTACGCCACGTTGATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAACTAACGAG----CTTTT--------A--AATTCCG................................................................2811.00100010000000000000
..............................................................................................................................................................................................AATTTCCACAATCT-GTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
droSec2
AAACTATGCCACGTTGATGCTAAGGATCAGCATAGATGTGGAGCTCACTGGTAGGTCTTCCCC---------------------------------------------CTGGGGACGAGACATTCCCCATG-----TCATGACCATAG----------------------------------AATCTGATAATTTTCACAATTT-GTCGCCG-----------------AA--G----------AAGGCGCCATAATTG-GAGGCCTTTTTTCCGCGT--AGACTG---GCGATAAGTAGTATCTTCAATTTAT-T--TATAGC------CAGTTC--------ACTACTAATGCCTGCCG--------------------TTTGGGTCATTTGCCA---GCAATAGCAAGTGCATGTCCAACAATAATT-------------------------------------------------------------------------------------------------------AGCT-----------------------------------------TCTAA--------------------------GCCAAATGGTTTTGTGGTGAATATTTCAACTAACGAG----CTTTA--------A--AATTCCGAT-CTCTCAACTAGACAAGAGCACCAAACTGGTCTGCTTCATGCTGAAGGTTCCGCACAACACCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....ATGCCACGTTGATGCTAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGTCTGCTTCATGCT...................2011.0010010
.AACTATGCCACGTTGATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
........CCACGTTGATGCTAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAACTGGTCTGCTTCATGCT...................2411.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTTTGTGGTGAAT..........................................................................................................1911.0010010
..................GCTAAGGATCAGCATAGATGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
dm3
AAACTATGCCACGTTGATGCTCAGGATCAGCATAGATGTGGAGCTAACTGGTAGGTCTTCCCC---------------------------------------------C-GGGGACGACTCATTCCCCATG-----TTATGACCATAG----------------------------------AATTTGATAATTTTCACAATCTGTTTGGTT-----------------TT--C----------ACAATC---TAATTG-GAGAACTTTTTTTGGTGT--AGACTG---GCGATAAGTAGTATCTTCAATTTAT-T--TATAGC------CAGTAC--------AATATCAATGCCTGCCG--------------------TTTGGGTCATTTGCCA---GCAATAGCAAGTGCATGTCCAACAATAATT-------------------------------------------------------------------------------------------------------ACCT-----------------------------------------TCCAA--------------------------GTCAAATGGTTTTGTGGTGAATATTTCAACTAACGAG----CTTTC--------A--AATTCCGAT-CTCTCAACTAGACAAGAGCACCAAACTGGTCTGCTTCATGCTGAAGGTTCCGCACAACGTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAAACTGGTCTGCTTCATGCT...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TGGTGT--AGACTG---GCGATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGTCTGCTTCATGCT...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ACTATGCCACGTTGATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................GCTCAGGATCAGCATAGATGTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
..................GCTCAGGATCAGCATAGATGTGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCCACGTTGATGCTCAGGATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGCACCAAACTGGTCTG............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTTTGTGGTGAATATTT......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...................CTCAGGATCAGCATAGATGTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GGATCAGCATAGATGTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................GCTCAGGATCAGCATAGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CAGGATCAGCATAGATGTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................TGCTCAGGATCAGCATAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....................TCAGGATCAGCATAGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GCTCAGGATCAGCATAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droEre2
AAACTATGCCACGCTCATGCTAAGGATCAGCATAGATGTGGAGCTCACTGGTAGGTTTTCCCC---------------------------------------------T--AGGACGAGACATTTCCCATG-----TTAGGGCCGAGA----------------------------------AATCTGAGAACTTCCGTAATCT-GCCGCCC-----------------TT--T----------AAGGCGCCATAATTG-GGAGACATTTTTACGCAT--AGACTG---GCGATAAGTAGTATCTTCAATTTAT-T--TATAGC------CAATAC--------ACTATTATTGCTTGTTG--------------------TTTTGGTCATTTAACA---GCAATAACAAGTGCATGTCCGACAATAGTT-------------------------------------------------------------------------------------------------------AGCT-----------------------------------------TACAA--------------------------GCCAAATGGTATTGTGGTGGGTATTTCAACTAATGAG----TTTTT--------A--AATTCCGAT-CTCTCAACCAGACAAGAGCACAAAACAGGTCCGCTTCATGATGAAGGTTCCGCACAACACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGAAGGTTCCGCACA.....2012.0020000200
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAAGGTTCCGCACAACACC2411.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAAACAGGTCCGCTTC........................2011.0010001000
....................TAAGGATCAGCATAGATGTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGAGCACAAAACAGGT...............................2011.0010000100
droYak3
AAACTATGCCACGCTGATGCTAAGGATCAGCATAGATGTGGAGCTCACTGGTAGGTGCTCCTC-------------------C-------------------------CCTAGGACGTGACATTCCCCATG-----------------------------------------------------------------------------------------------------------------AAGGCCCCATAATTG-G---------------GT--AGCTTG---GCGATAAGTAGTATCTTCATTGTAT-T--TATAGC------CAGCAC--------ACTATTATTGCTTGTTG--------------------TTTGGGTCATTTTCCA---GCAATAGCAAGTGCATGTGCAGCAATAGTT-------------------------------------------------------------------------------------------------------AGCT-----------------------------------------TACTA--------------------------CCCAAATGCTATTACAGTGAATATTTCAACTAACGAG----TTTTC--------C--AATTACGAT-CTCCCAACCAGACAAGAGCACCAAACTGGTCTCCTTCATGATGAAGGTTCCGCACAACACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............GATGCTAAGGATCAGCATAGATGTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.00400000040000
.........................ATCAGCATAGATGTGGAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..................GCTAAGGATCAGCATAGATGTGGAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.............................................................................................................................................................................................................................................................................................................................................CAC--------ACTATTATTGCTTGTTG--------------------TTTGG...............................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTTCATGATGAAGGTTCCGCAC......2511.00100100000000
.................TGCTAAGGATCAGCATAGATGTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
droEug1
AAACTATGCCACTTTAATGCTGAGGATCAGCATAGATGTGGAACTGACTGGTGAGTCGTCTTA-------------------TGCATTGACAA--------------------------ATATGCTCTAT-----------------A----------------------------------AACTTGATAAAATGCCTAATCTTTGTG-CC-----------------TA--G----------AAAACGCAATAAA---AA-GGCTTTTATTCGTGT--AGACTG---GCGATAAGTAGTATCTTCAATTTAT-T--TATAGC------CAGTACCTACCTGGACAATAAATGTTTGTTG--------------------TTTGAATCATTTCCCG---ACAATACCAAGTGCATGTCGAATACTAATT-------------------------------------------------------------------------------------------------------ATCT-----------------------------------------TTTAA------------------T-------GCCAAAC------ATAACAAAAACTTTGAATAACAAG----TTTTT-----------AATTCCGAT-CTCACCGCCAGACAAGAGCACCAAACTGGTCTCCTTCATGATGAAGGTTCCCCACAAAACTSizeHit CountTotal NormTotal
No Reads
droBia1
AAACTATGCCACCCTCATGCTGAGGATCAGCATAGATGTGCAGCTCACTGGTGAGTCTTCGCC-------------------AG----------------------------CAAAGACATACTT---TTG-----TT--------------------------------------------AACCCAAGAAAATACACTATCTTGTCGCCC-----------------TA--G----------AAAGCGCCATAAATA-GG-CGCTTTCATTGGAATCGAAAAGT---TTGATAAGTAGTATCTACAACTCAT-T--TATAGCCCGGGCCAGTGC--------ACAATAAATGCTTGTTG--------------------TTTGGGTCATTTTCCA---ATAATAGCAAGTGCATGTCCAAAGACAATT-------------------------------------------------------------------------------------------------------AGCT-----------------------------------------TCTA----------------------------TCGAAAGGTGTTATCGTTCATATTTCATATAACGAG----TTTTT--------A--AAACCCGAT-CTGTCTGCTAGATAAGAGCACCAAACTGGTCTCCTTCATGATGAAGGTTCCGCACAAAACGSizeHit CountTotal NormTotal
No Reads
droTak1
AAACTATGCCACGCTTATGCTGAGGATCAGTATAGATGTAGAGCTCACTGGTGAGTTTTCTCT---------------------------------------------T----------ACATATTCCATG-----TCTTGT-----T----------------------------------AGCCCGATAGAATGCACAATCTTGTCGGCC-----------------TA--G----------AAAGCCCCATAAATG-AG-GGCATTTATTTGTAT--AGAAGT---TTGATAAGTAGTATCTTCAATTCAT-T--TATAGC------CAGTAA--------ACAATAAATGCTTGTTG--------------------TTTGAGTCATTTTTCA---ATAATAGCAAGTGCATGTCCAACGGTAATT------------------------------------------------------------A--------------------GATTGGCTGTATG-----------------------------------------------------------------------------------------------------------ATTTCAACTAACGAG----TTTCC--------A--AAACCCGAT-CTCACCGCCAGATAAGAGCACCAAACTGGTCTCCTTCATGATGAAGGTTCCGCACAAAACTSizeHit CountTotal NormTotal
No Reads
droEle1
GAACTATGCCACTCTGATGCTGAGGATCAGCATAGATGTGGAGCTAATTGGTGAGTTAGCTGA--G-----------------TTTTCGGCAA-A-----------------AAAGG----------------------------AAG----------------------------------TACTTGACCAAATGCACAATCTTGCCTTTC-----------------TA--G----------AAAAGGCCATAGAAA-AA-GGATTATATTCGTGT--CGCTTG---GCGATAAGTAGTATCTCAACTTTAT-T--TATGAT------CAGTGC--------ACAATAAATGCCTGCTG--------------------TTTGGGTCATTTTTTA------ATAACAAGTGCATGTCACCTAATAATT-------------------------------------------------------------------------------------------------------AACC-----------------------------------------TGCAACCAGCTG---AACGGAAATGCCAAT------CTGGTGATATAGTAAACATAGCAAGTAACCAA----ATTTT-----GTTT--TATTTTAAC-CCATTTGCCAGACAAGAGCACCAAACTGGTCTCCTTCATGATGAAGGTACCACACAAAACGSizeHit CountTotal NormTotal
No Reads
droRho1
AAACTACGCCACTCAAATGCTGAGGATCAGCATAGATGTGGAACTCACTGGTGAGTATTTTGT--------------------------------------------------------------------------TAAGGTTCAAC----------------------------------TAGCTGACGAAATCCA-----------------------------------------------------------TGCAGGGCTTTTTATTTAAGA--CACTTG---GCGATAAGTAGTATCTCGAACTTAT-T--TATAGC------CAGTAC--------ACAATAAATACTTGCTG--------------------TTTGGTTCATTTTCCA---ATTATAGCAAGTGCATGTCCCACAATAATT-------------------------------------------------------------------------------------------------------AACT-----------------------------------------TCTAACCAGCTTTTAGCCAA---TGCTAAACGTAAAATGGT---ATAGTAATTATATCAAATAACTAG----TTTTT--------T--TATTTCGAT-CTCTCCGCTAGACAAGAGCACCAAACTGGTCTCCTTCATGATGAAGGTACCACATAAAACTSizeHit CountTotal NormTotal
No Reads
droFic1
AAATTATGCCACTTTAATGCTGAGGATCAGCATAGATGTGGAACTCACTGGTGAGTCTTCTACGAAGTAGATATATACTGCA----TTG-TAAAGAATT-CCTAGAT--------------------------------------AACTAGCTGAAGAATTGCATAAGCTTGCC--------GACCCAAAA--------------------------------------CA--A----------AAAGCGCAATAAATG-AA-GGCTTTTATTTGAGT--CGTCTG---GCGATAAGTAGTATCTCCACTTTAT-T--TATAGG------AACAAC--------ACAATAAATGCTTGTTG--------------------CATGGGTCACTTTACA---ATAATAGCAAGTGCATGTCCCATAAAAATT-------------------------------------------------------------------------------------------------------TGCT-----------------------------------------A---------------------------------------------------------------------------------------------------TTGTTTCAGATAAAAGCACCAAACTGGTCTCCTTTATGATGAAGGTTCCCCACAGGACTSizeHit CountTotal NormTotal
No Reads
droKik1
AAACTATGCCACTCTTATGCTGAGGATCACAATCGATGTGGAGCTTACTGGTGAGTGCCGTGGAA-----------------GG-GTCA-AGACAATAGATAG--------------------------------------------------------------------------------AGTGGCCTGAATGCACAATCTTTCTC-----------------------------------------CCATATAAG-GA-GCCTTTTATACGTGC--GGGCTAGCAGCGATAAGTAGTATCTTTAGTTTAT-T--TATAGC------CAGTAG--------ACAATAAATGCTTGTTA--------------------TGTGTGTCATTTAATT---TTGATAGCAAGTGCATGTCTAAAAATAATG-------------------------------------------------------------------------------------------------------GGTT-----------------------------------------AATAACAAGCTA---ATCAGATTTAAAAAA------CAA-------GCGAAATATTTCCGCTAACCAG----T------------------TCCGATCTCCCTATCTAGACAAAACCACCAAAACGGTGGCCTTTATGATGAAGGTTCCCCACAAAACTSizeHit CountTotal NormTotal
No Reads
droAna3
AAACTATGCCACTCTGATGCTAAGAATCAGCATAGATGTCGAACTTACTGGTAAGCTGGTTAA-------------------AATTTTA-AAAATA----TATAGCGT-------------CCA-----AAC-----CAA----------------------------------ATAAACACCAAT---TGAAATGAATTATCTAGCTGGTC------------------A--GGTAACACGAT--------ATTTTT------------------GT--AGA--A---CTGATAAGCGGTATCGCAATTTTCTATTATATTGG------TTTCAA--------ACAATAAAAGTTCG-----------------------TGTTAATCATCGCACA---ATAATAGGAACTCTTTATCAAACA------------------------------------------------------------TGTT---------------------------------------------------------------------------------------------------------------------------------------------ATATTTTAACTA-CGAGACTAATTGT-----TT-TT-CCCTCTACC-CCCTGACACAGACAAATCCAGCAAGCAGGTCTCGTTCATGATGAAGGTTCCGCATGATACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCTCGTTCATGATGAAG...............2012.002101000
.....ATGCCACTCTGATGCTAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAATCCAGCAAGCAGGT...............................2012.002100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCAGCAAGCAGGTCTCGTTC........................2311.001100000
AAACTATGCCACTCTGATGCTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.................................AGATGTCGAACTTACTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
.......GCCACTCTGATGCTAAGAATCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.......................GAATCAGCATAGATGTCGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...............................ATAGATGTCGAACTTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
......TGCCACTCTGATGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
........CCACTCTGATGCTAAGAATCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................ATCAGCATAGATGTCGAACTTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGGTCTCGTTCATGATGAAG...............2411.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCATGATGAAGGTTCCGC........2111.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCGTTCATGATGAAG...............1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTCTCGTTCATGATGAAGG..............2311.001100000
AAACTATGCCACTCTGATGCTAAGAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAATCCAGCAAGCAGGTCTCGT..........................2511.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCCAGCAAGCAGGTCTC............................2111.001010000
droBip1
AAACTATGCCACTCTGATGCTCAGGATCACCATTGATGTCGAGCTTACTGGTAAGCTGTTGAA-------------------AA-TCGA-AAAATATACATATAGCTC-------------CCA-----TAGCAAGTCAA----------------------------------ACAAACACCAAT---TGAAATGCATTATCTAGCTGCCA-----------------CACAGGTAACCCGAT--------ATTTTA------------------GG--AGA--A---CCGATAAGCGGTATCAGAAATTTAT-T--TCTGAT------T-TCAA--------ACAATAAAAGTTCGTGT-----------------------TATTCATGGCACA---ATTATAGACATTCTTTATCTATC-------------------------------------------------------------------A--------------------AACCAGCTATATT---------------------------------------------------------------------------------------------------------ATATTTCGACTA-CAAG----CTTCCATTGTTT-TT-A-CCTCACCCTCCCCACACAGACAAGACCACCAAGCAGGTCTCTTATATGATGAAGGTTCCACACGACACTSizeHit CountTotal NormTotal
No Reads
dp5
GAACTACGCCACTCTGATGCTGAGAATCAGCATCGATGTGGAGCTCGATGGTGAGTACTACCTGAGCTCGATATAAACGTAC----CTA-AAAATAGAT-TATAGCCT-------------ACA-----ACTCACGATAC----------------------------------GTAATTACTGTTTGTTGGTGTTTGTGTTCGGTTCGGACTGCGATAACTAATCGTA--------------------------------------------------------------------AAATATCTTCAATTTAC-C--TATAAC------ATTGGC--------ACAATAAAAGTCCGCTG--------------------TTGG---TATTTCACAATGATAATAGGTATTGCTTGCCGAAGC------------------------------------------------------------TGGCTCG--------------------CATTAGCCATCTAACAATGACTGACCAATTTGATTGTACTTGAAGGTGCAATGTAATTAGAGTAGTTTTTCA--------------------------GGCAAATATTCTTTCGTTACATA----------------------------------TCGCCTTTT-CCCTTTTCCAGACAAAAGTACTAAGCACAAATCCTTCATGATGAAGGTGCCCCATAACACCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
GAACTACGCCACTCTGATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
.AACTACGCCACTCTGATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
.....................GAGAATCAGCATCGATGTGGAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020200000000
........................AATCAGCATCGATGTGGAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGAAGGTGCCCCATAAC...2211.0010010000000
...........................CAGCATCGATGTGGAGCTCGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.....................GAGAATCAGCATCGATGTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
GAACTACGCCACTCTGATGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
....................TGAGAATCAGCATCGATGTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
......................AGAATCAGCATCGATGTGGAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
......................AGAATCAGCATCGATGTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
..ACTACGCCACTCTGATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTGCAATGTAATTAGAGTA..................................................................................................................................................................2311.0010000001000
.........................ATCAGCATCGATGTGGAGCTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................AATGATAATAGGTATTGCTTGCC..............................................................................................................................................................................................................................................................................................................................2311.0010010000000
.........CACTCTGATGCTGAGAATCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGAAGGTGCCCCATAA....2111.0010100000000
GAACTACGCCACTCTGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................AATCAGCATCGATGTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
........................AATCAGCATCGATGTGGAGCTCGATGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
.....................GAGAATCAGCATCGATGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................AGAATCAGCATCGATGTGGAGCTCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.....................GAGAATCAGCATCGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.................................CGATGTGGAGCTCGATGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.1410100000000
droPer2
GAACTACGCCACTCTGATGCTGCGAATCAGCATCGATGTGGAGCTCGATGGTGAGTACTACCTGAGCCCGATATAAACGTAC----CTA-AAAATAGAT-TATAGCCT-------------ACA-----ACTCACGATAC----------------------------------GTAATTACTGTTTGTCGGTGTTTGTGTTCGGTTTGGACTGCGATAACTAATCGTA--------------------------------------------------------------------AAATATCTTCAATTTAC-T--TATAAC------ATTGGC--------ACAATAAAAGTCCGCTG--------------------TTGG---TATTTCACAATGATAATAGGTATTGCTTGCCGAAGC------------------------------------------------------------TGGCTCG--------------------CATTAGCCATCTAACAATGACTGACCAATTTGAGTGTACTTGAAGGTGCAATGTAATTAGAGTAGTTTTTCA--------------------------GGCAAATATTCTTTCGTTACATA----------------------------------TCGCCCTTT-CCCTTTTCCAGACAAAAGTACTAAGCACAAATCCTTCATGATGAAGGTGCCCCATAACACCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................CTGCGAATCAGCATCGATGTGGAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
.........................ATCAGCATCGATGTGGAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................................................................ACGTAC----CTA-AAAATAGAT-T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
GAACTACGCCACTCTGATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..ACTACGCCACTCTGATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droWil2
GAACTATGCAACGTTAATGCTGAGAGTAACTATCGACGTCGAGCTTACGGGTAAAGTACTCGA--------TGCAAATA----G---TA-TAAGTAAAT-TTTTGTTG---------TCAGATCACTGATG-----TC-----------------------------------------------------ACTTCCATA---------------------------------------------GTGCGCCATGGC--------------------------TTGCCCTTGACCAATTGTATCTATAATTGCT-T--TATAACTATATTGATTGC--------CAGATATGTACCTACGGTTTATATATAGCTCATTTATTTTGGGTTATTTCACC---ATAC-------------TCCAGCAATAATTGGCATAGCAAAACAAAACATTGCTAAAGCACTTCTCTGATAAGTTTAGCGACAATGGGTGACAGCAGTTATTGATCGATCAA-----ATATTTG-----------------------------------------------------------------------------------------------------------GTTAAAGCTAAA--G----CTTAT--------ACACCTCTTGA--TATTCTCTTAGATAAACAGACGAAAAATGTTTCCTACATGATGAAAGTTGCCCACGACTCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................ACCTACGGTTTATATATAGCTC..........................................................................................................................................................................................................................................................................................................................................................................2211.00110000
..................GCTGAGAGTAACTATCGACGTCGAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000
.........................................................................................................................ATCACTGATG-----TC-----------------------------------------------------ACTTCCATA---------------------------------------------GTGCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAAACATTGCTAAAGCA.....................................................................................................................................................................................................................................................................................2111.00100010
............GTTAATGCTGAGAGTAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.........................GTAACTATCGACGTCGAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.....................................................................................................................................................................................................................................................GTGCGCCATGGC--------------------------TTGCCCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.....ATGCAACGTTAATGCTGAGAGTAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGAAAGTTGCCCACG.....2011.00100100
..............TAATGCTGAGAGTAACTATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.........AACGTTAATGCTGAGAGTAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTCCTACATGATGAAAGT.............2311.00100100
droVir3
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTTTCGACTAGACAAAACCGTCAAGCCCATTTCTTATATGATGAAAGTGCCCCACGACTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACCGTCAAGCCCATT..............................1911.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCCCATTTCTTATATGATGAAAGT.............2711.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAACCGTCAAGCCC.................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGATGAAAGTGCCCCACGACT..2411.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
TTT--------------------------------------------------------------------------------------------------------------------------TATACG-----GAATGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATAATATGAT----TATTT--------T--GGCTACAAT-TTTAAAATTAGATAATACCATCAAACATAATTCATTTATGATGAAAGTACCGCACGACTCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATGAAAGTACCGCACGA....2120.501100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTACCGCACGACTCT1820.501100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTACCGCACGACTCT1920.501100000
droGri2
A-----------------------------------------GCTAACTGGTTAGTGCGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACATTTCAAATTTTG--------TCT--------T--AAGTCCTTC-TCCCCCTCAAGATAAAACCATAAAGCCCATGTCCTTTATGATGAAGGTACCACACGAGTCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:47 PM