dsi_10577

five_prime_UTR [2l_18379700_18379705_+]; CDS [2l_18379706_18379981_+]; exon [2l_18379700_18379981_+]; intron [2l_18379041_18379699_+]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AAATTAATTTGTAAAATATTCTAGTGTTGCTGTATCATTTTCTTAACTTCTAACTTCTTTTTTTTATGAGTTATAATTACACATGTCACGAATAGCTAAATTTTCATACCAAGTGATCTTAATTGAGTATTTGAGGACAAGTCCCAATTAATTATTTGTGATTAATTTAAAATTAATTAAATTTATTTCACTTGCCGTAGGGTACAATGTGGTCGCCGCGGGTTGCCCTGCTTTTCCTGGCCCTAGCACT ************************************************...............(((((((.((((((.....(((((((((((.(((..........((((((.((......)).)))))).(((....)))...))).)))))))))))...........)))))))))))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
..................................................................................................................................................................................................................GGTCGCCGCGGGTTGCCCTG....................	20	0	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................AGTGATCTTAATTGAGTATTTGAGGACA...............................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0
.....................TAGTGTAGCGGTATCA.....................................................................................................................................................................................................................	16	2	20	0.25	5	0	0	3	2	0	0	0
...........................TGCTGTATCATTTCCT...............................................................................................................................................................................................................	16	1	5	0.20	1	0	0	1	0	0	0	0
.....................................................................................................................................AGGGCAAGTCTGAATTAATT.................................................................................................	20	3	8	0.13	1	0	0	0	1	0	0	0
.................................................................................................................................TTTGAGGACATGTACAAAT......................................................................................................	19	3	20	0.10	2	0	0	0	0	2	0	0
......................................................TTCTTTTTTCTATGAGAT..................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	1	0
.................................................................................................................................................AACTAAGTATTTGTGATT.......................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	1
...............................................................................................................................................................................................................CCCGGTCGCCGCGGGTTG.........................	18	3	20	0.05	1	0	0	0	0	0	0	1
............................................................................................................................................................TGTGGTTAATTTAAAA..............................................................................	16	1	20	0.05	1	0	0	0	0	0	1	0

TTTAATTAAACATTTTATAAGATCACAACGACATAGTAAAAGAATTGAAGATTGAAGAAAAAAAATACTCAATATTAATGTGTACAGTGCTTATCGATTTAAAAGTATGGTTCACTAGAATTAACTCATAAACTCCTGTTCAGGGTTAATTAATAAACACTAATTAAATTTTAATTAATTTAAATAAAGTGAACGGCATCCCATGTTACACCAGCGGCGCCCAACGGGACGAAAAGGACCGGGATCGTGA ************************************************...............(((((((.((((((.....(((((((((((.(((..........((((((.((......)).)))))).(((....)))...))).)))))))))))...........)))))))))))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M024 male body
.........................................................................................................................................GTTCAGGGTTAATTACTAGACT...........................................................................................	22	3	2	0.50	1	0	0	1	0	0	0
..........................................AAATGAAGATTGCAGAAAA.............................................................................................................................................................................................	19	2	2	0.50	1	1	0	0	0	0	0
..............................................................................................................................................................................................GAACGGCATCCCATG.............................................	15	0	3	0.33	1	0	0	0	1	0	0
........................................................................................................................................................................................................................................AAAGGACCTGGATCG...	15	1	4	0.25	1	0	1	0	0	0	0
.........................................TAAATGAAGATTGCAGAAAA.............................................................................................................................................................................................	20	3	20	0.25	5	3	0	0	0	2	0
.........................................................AAAAAAAATACTGAATAT...............................................................................................................................................................................	18	1	4	0.25	1	0	1	0	0	0	0
...........................................................................................................................................TCAGGGATAATTAGTAA..............................................................................................	17	2	11	0.18	2	0	2	0	0	0	0
..........................................AAATGAAGATTGCAGAAAAG............................................................................................................................................................................................	20	3	13	0.15	2	2	0	0	0	0	0
...................AGCTCAAAACGACATACTAAAA.................................................................................................................................................................................................................	22	3	7	0.14	1	1	0	0	0	0	0
.................................................................................................TTTAAAAGTTTGGTTC.........................................................................................................................................	16	1	16	0.06	1	0	0	0	1	0	0
............................................ATGAAGATTGCAGAAAA.............................................................................................................................................................................................	17	2	20	0.05	1	1	0	0	0	0	0
.............................................................................................................GTTCAGTAGAAGTAACGCA..........................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:18379500-18379749 +	dsi_10577	AAA--TTAATTT------------GTAAAATATTCT-----------------------------------------AGTGTTGCTGTATCATTTTCTT----A-----------------------------------------------------------------------------------ACTT-CTAACTTCTTTT--------------------------------------------------------------------------------------------------------------------------------------------TTTTATGAGT-----------T--------A--TAATTACACATGTCACGAATAGCTA------------------------------------------------------------------AATTTTCA-----------------TACCAAGTGATCTTAATTGAGTA-TTTG-----------AGGACAAGTCCCAA--------TTAATTATT-------------T------------GT-----GA-TTAATTTAAAATTAA---TT-AA--ATTTATT-TCACTTGCCGTAG--GGTACAATGTGG------TCGCCGCGGGTTGCCCTGCTTT------TCCTGGCCC-TAGCACT
droSec2	scaffold_7:2450700-2450954 +		AAA--GTAATTT------------GTAAAATGTACATC-------------------CG--TCATAAAAATTATTTGAATGTTGCTGTATCATTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTTTA----------------------AAGCCCTTTATAAGTTTTTCTATAGT---------A--TAATTACACATGTCACGAATA-----------------------------------------------------------------------------------------------------GTGATCTTAATTGAATA-TTTG-----------AGGACAAGTTCCAA--------TTAATTATT-------------T------------GT-----GA-TTAATTTAAAATTAA---TT-AA--ATTTATT-TCACTTGCCGTAG--GGTACAATGTGG------TCGCCGCGGGTTGCCCTGCTTT------TCCTGGCCC-TAGCACT
dm3	chr2L:18824083-18824349 +		ACC--TTAATGT------------GTAAAATGTACATC-------------------CG--TCATA---------------TTTCTGTCTCATTTTCTT----GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATTTT----------------------AAGCCCTTTTTAAGTTGTTCTATAGTT--------A--TAATTACACATGTCACGAATAGCTA------------------------------------------------------------------AATTTGTA-----------------TACCAAGTGATCTTAATTGAGTA-TTTG-----------ACGAGAAGTTTCAA--------TTAATTATT-------------C------------GT-----GA-TTAATTTAAAATAAAATGTT-GA--ATTTATT-TCACTTGCCGTAG--GGTACAATGTGG------TCGCCGCGGGTTGCCCTACTTT------TCCTGGCCC-TAGCACT
droEre2	scaffold_4845:5452531-5452841 -		AAA--TTCAGCT------------TCAAAATGTACATC-------------------TG--CCATACAAAGTAGTTTAATGTGGCTGTATCATTTTCTA----TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATTTTCGAACTACAATAAATCACTTTACGAGCCTCTTATAAGTT-TTCTAT---------------------CACAGGTCACGAATAGTAC------------------------------------------------------------------AATTTCCATTTCAAAACAAAATTCTTGCCAAGTGGTCTTCAGTCATTA-TT---------AATTAGGACAC-----AATTTTGTTTTTATTTTTA-------------C------------GC-----GT-TTCATTTCAAACTAA---TA-GA--CTATATT-TTATTTGCAAAAG--GGTACAATGTGG------TCGCCACGGGTTGTCCTACTTT------TCCTGGCTC-TTGCATT
droYak3	2R:5337870-5338192 +		AAA--TTCATGT------------TTAAAATGTACATC-------------------TG--TCTTAAAAAGTCGTCTAATGT-G------------CTA----GA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATATTCAAATTAAAATACATGACATTACGAACCCTTCTTAGGTTGTTCTATAGTTAATCTTTCA--TAGTTACACGGGTCAA--ATTGTAC------------------------------------------------------------------AATTTCCATTTTAAAACTAAATTCTTGCCAAGTGGTCTTGATTGCGTA-TTCGTGTTT--AATAAGGAAAC-----AATATAGTTTTTATTTTTA-------------A------------GC-----GT-TTCATTTATAACTAA---TA-GA--GTGTATT-TTACTTAAAAAAG--GGTACAATGTGG------TCACCGCGGGTTGTACTCCTTT------TCCTGGCCC-TTGCACT
droEug1	scf7180000409463:1154844-1155132 +		AAA--TTACAAT------------AT-------ATACT-------------------TT---TATAT--TACTTTTATAAAGCGCT---TAGTA----------------------------------------------------------------------------ATCTTTTGCGACCCTAAACTTACGCTCGTGCTTTGGTTATTAAATAAAAACAAATCTTCAACGAAAAAAACACAATTTA-ACA------T-TCAAAG---------------------------------------------------------------------------------------------------------------------------TGCGAACTTTAA-------------------------------------------------------------------------------------AATTATCATCAAATATTTTTTAT---GTA-CATATATTCCGAAAA-----------------AGTTTTTAGCAAAA-------------C------------AT-----G--------TTATATTAA---TCCAA--AATCATA-TTACTTTTC-AAG--GGTACAATGTGG------TCACCACTGTTCGCCTTGGTTT------GCCTGACCC-TAGCCTT
droBia1	scf7180000302422:4844086-4844170 -		TTC--A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTAT---TT-AA--ATTCCCA-TTTATTTTCAGAG--GGTAAAATGTGG------TCGCCGTTGGTCGTTGTAATCT------TTCTGGCCC-TGGCCCT
droTak1	scf7180000415385:86613-86677 -		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TGACTTTTTAAAA--GGTAAAATGTGG------TCGCCATTGGTCCTTCTAGTCT------TCTTGACCC-TGGCCGT
droEle1	scf7180000491046:4190372-4190655 -		AAA--GTGCTTG------------GTAGATTA-----------------------------------------------------------------------------------------------------------------------------------------------TTACAAGCCTTAATGAATA----------------------------TTTATTTAATGAAGAAAAATCCATTTA-ACCAATCTAT-------------------CTAAGAAATTCTTATTTTACATTTTCCTGCAAAATTTA----------------------TAATTCTATTTAAC----TC-----------------------------------------------------------------------------------TGT------------TGCATATCTTACATTTTTA------------------------------------------------------TA-----------------TC--------A--AAATTTAAATTTTCCCTTTCTTTTATTTTGTTCTGTTTTAATTTAGATGTAA-T-TT-AAATATATATT-TTTCTTTTTAGAG--AGTGCAATGTGG------TCGCCGCTGGTCGTTTTAGCCT------TCCTGACCC-TGGCCTT
droRho1	scf7180000769218:23959-24233 +		ATA--TAATTCA------------TTAAAATAAATGCT-------------------TT---CCTATAATGTTGTTTTAAAAAACTGT--------------------------------------------------------------------------------------TTTACGAATCGTTACTAACA----------------------------ACTATAAAATTAAAAAAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------GTAATCTATGTACATTCAGTAAGAAACGAAAACGATATCTCTTATTCG-----------AACTTTTTGAG-----------------------------------------------------TGCCTTTTATTCCATATA-----------------AC--------A--ACATATTCTC----T----TTGATTTCT-----------------AGATTAA---TC-GAATAGAAATT-GTACTTTTCGGAG--AAAACAATGTGG------CCTCCGCTGGTCATTCTAGTCT------TCCTGGCCG-TGTCCTT
droFic1	scf7180000454059:99650-99904 -		AAA--TTGATCGAATAAATAGAAAGTAGAGTGTATACT-------------------TTATTTATA---------------TTTTTAT--TTTTTTGTG----TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTTTTCAATG-------------------------------TATTTAATGGTT--------TTAAAAGCAAACAAAATACGAACTGTAAAT--------------------------------------TGT------------TGGGTT------------------------------------------------------ATTTCATTCTGAATA-----------------GG--------A--ATATTTAAGTTTAACGAATTCATTTTCT-----------------AGACTTG---GT-AA--AAGTGTT-TTTCTTTTCAGGG--TACAAAATGTGG------TCGCCGGTGGTTGCCTTACTGT------TCCTGACCC-TGGTTGT
droKik1	scf7180000302570:817596-817912 -		ATC--TGTGAAT------------GTAAAGTGTTTAAC-------------------A----------------------------------------------------------------------------------------------------------------ATTGTTTACAAAATAT----------------------------TAAATAAATATTTCCTTTGAAGAATTTAAAATTTATATA------TTTAAAAGCGTGAAAAATTGTTTAAAAATAATTATATATAAATTTCCT------------------------------------------------------------------------------------TCCAAGA-----------ATATAAAATGTATACAATTTTTCTTTTTTCCTCGACTATAAAATATTTTATA-----------------------------------------------------TATATT----------------------------------------------------TTTCTCCTTCATTAAATTTCTT--AA-ATAATTAAAAATAATATC-T-TAAT-ATCTTT-GTTTCTTCTTTAGATCTCAAAATGTGG------TCACCGCTGGTTCCTGTCTTTCTGTTAATCCTCACCC-TAGCCGG
droAna3	scaffold_12916:8290186-8290376 +		TAA--ATGTGTTG-----------AAAAAATCGTACTTCAAAACAGTTTACGAGAA-------------------------------------------GAGTTTTCACTTCCAAGAAAAGTTGAATACTACTTCAAAGCTTTTCATTGATAATTTCACGTTTTTTTTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCT--A-------------------T-T-CTA--ATTGCT-AGTTTTTTTATAG-----ATTATGTGG------TCGCTACTAGTTGCTCTAGTTT------TGCTCACCC-TCTCC--
droBip1	scf7180000396728:25140-25370 -		TAA--GTAACTG------------AAAAAACGGACTTTTTATTCGGATTATTAGATAAT--CCTTA---------------TTTTTGTTTTTTTTTTC-GATTTTTTATTTTC-GGATTATTTAACAATTTCTTCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTTTAACTGCTTA-TATT-----------ATGTCAAATTTCGA--------ATAATT---------------------------------------------TAAATTTGTAAC-T-GAT--AACGTTTTATTTTTTCATAG--ACTATTATGTGG------TCGCAACTGGTCGCCTTAGTTT------TGCTCACCCATAGCATC
dp5	4_group3:4814724-4814813 +		ATC--TAAAAGT------------GTTCCGTTTTTTCG-------------------A----------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACCCGTA----GAAACATGTGT------TCGTCGCTGCTCACCGTAGTGCTGTTGGGGCTGACCC-TGGCCCA
droPer2	scaffold_1:6314442-6314485 +		A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT------TCGTCGCTGCTCACCGTAGTGC------TGTTGGGGC-TGACCCT
droMoj3	scaffold_6500:26546625-26546720 -		TTAAATTTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCATGCCAACAGAAGCAA------------------------------------------------------------------AACACAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA----AAATAATGCTGCAGTTGCGTTCGCTGGGAGCGCTGCTGC------CGCTGCTGC-TATTGCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAA--TTAATTT------------GTAAAATATTCT-----------------------------------------AGTGTTGCTGTATCATTTTCTT----A-----------------------------------------------------------------------------------ACTT-CTAACTTCTTTT--------------------------------------------------------------------------------------------------------------------------------------------TTTTATGAGT-----------T--------A--TAATTACACATGTCACGAATAGCTA------------------------------------------------------------------AATTTTCA-----------------TACCAAGTGATCTTAATTGAGTA-TTTG-----------AGGACAAGTCCCAA--------TTAATTATT-------------T------------GT-----GA-TTAATTTAAAATTAA---TT-AA--ATTTATT-TCACTTGCCGTAG--GGTACAATGTGG------TCGCCGCGGGTTGCCCTGCTTT------TCCTGGCCC-TAGCACT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------TCGCCGCGGGTTGCCCTG...........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGATCTTAATTGAGTA-TTTG-----------AGGACA............................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AAA--GTAATTT------------GTAAAATGTACATC-------------------CG--TCATAAAAATTATTTGAATGTTGCTGTATCATTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTTTA----------------------AAGCCCTTTATAAGTTTTTCTATAGT---------A--TAATTACACATGTCACGAATA-----------------------------------------------------------------------------------------------------GTGATCTTAATTGAATA-TTTG-----------AGGACAAGTTCCAA--------TTAATTATT-------------T------------GT-----GA-TTAATTTAAAATTAA---TT-AA--ATTTATT-TCACTTGCCGTAG--GGTACAATGTGG------TCGCCGCGGGTTGCCCTGCTTT------TCCTGGCCC-TAGCACT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................................................................................................................................................TTCTATAGT---------A--TAATTACACATGTCACGA...........................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................TTCTATAGT---------A--TAATTACACATGTCA..............................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	1	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGG------TCGCCGCGGGTTGCCC.............................	22	1	2.00	2	2	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TTCTATAGT---------A--TAATTACACATGTCACGAA..........................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------------------------------------------------------------------------------------GTGATCTTAATTGAATA-TTTG-----------AGGA..............................................................................................................................................................................	27	1	2.00	2	0	0	2	0
...................................................................AAATTATTTGAATGTTGCTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
....................................TC-------------------CG--TCATAAAAATTATTTGAATGTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCTGCTTT------TCCTGGCCC-T......	21	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-AA--ATTTATT-TCACTTGCCGTAG--GG.............................................................	26	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTGCCCTGCTTT------TCCTGGCCC-.......	25	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGTAG--GGTACAATGTGG------TCGC.........................................	25	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTAG--GGTACAATGTGG------TCGC.........................................	24	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------------------------------------------------------------------------------------GTGATCTTAATTGAATA-TTTG-----------A.................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----------AGGACAAGTTCCAA--------TTAATTATT-------------......................................................................................................................................	25	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGG------TCGCCGCGGGTTGCC..............................	21	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAATGTGG------TCGCCGCGG....................................	21	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-TCACTTGCCGTAG--GG.............................................................	18	1	1.00	1	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATGTGG------TCGCCGCGGGT..................................	21	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------TCGCCGCGGGTTGCCCTGCT.........................	22	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGGTTGCCCTGCTTT------TCCTGGCCC-.......	27	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTAATTGAATA-TTTG-----------AGGACAAGT.........................................................................................................................................................................	26	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATA-TTTG-----------AGGACAAGT.........................................................................................................................................................................	20	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATA-TTTG-----------AGGACAAGTTCCAA--------T...........................................................................................................................................................	25	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCCGTAG--GGTACAATGTGG------TCGCC........................................	27	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATT-TCACTTGCCGTAG--G..............................................................	21	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTAG--GGTACAATGTGG------TCGCC........................................	25	1	1.00	1	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCCGTAG--GGTACAATGTGG------TCGC.........................................	26	1	1.00	1	1	0	0	0

dm3

ACC--TTAATGT------------GTAAAATGTACATC-------------------CG--TCATA---------------TTTCTGTCTCATTTTCTT----GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATTTT----------------------AAGCCCTTTTTAAGTTGTTCTATAGTT--------A--TAATTACACATGTCACGAATAGCTA------------------------------------------------------------------AATTTGTA-----------------TACCAAGTGATCTTAATTGAGTA-TTTG-----------ACGAGAAGTTTCAA--------TTAATTATT-------------C------------GT-----GA-TTAATTTAAAATAAAATGTT-GA--ATTTATT-TCACTTGCCGTAG--GGTACAATGTGG------TCGCCGCGGGTTGCCCTACTTT------TCCTGGCCC-TAGCACT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTGG------TCGCCGCGGGTTGCCCT............................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTGG------TCGCCGCGGGTT.................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGG------TCGCCGCGGGTTGCCCTACT.........................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGG------TCGCCGCGGGTTGCC..............................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGG------TCGCCGCGGGTTGCCCT............................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTGG------TCGCCGCGGGTTGCCCTAC..........................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTGG------TCGCCGCGGGTTG................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAATGTGG------TCGCCGC......................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTGG------TCGCCGCGGGTTGCC..............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTAATTGAGTA-TTTG-----------A.................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGG------TCGCCGCGGGTTGAA..............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTTCTT----GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATTTT----------------------AAGCCCTTT..........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-TCACTTGCCGTAG--GGT............................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT-GA--ATTTATT-TCACTTGCCGT...................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGG------TCGCCGCGGGTTGCCC.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGG------TCGCCGCGGGTTGCA..............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGG------TCGCCGCGGGTTGCCCT............................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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droEre2

AAA--TTCAGCT------------TCAAAATGTACATC-------------------TG--CCATACAAAGTAGTTTAATGTGGCTGTATCATTTTCTA----TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATTTTCGAACTACAATAAATCACTTTACGAGCCTCTTATAAGTT-TTCTAT---------------------CACAGGTCACGAATAGTAC------------------------------------------------------------------AATTTCCATTTCAAAACAAAATTCTTGCCAAGTGGTCTTCAGTCATTA-TT---------AATTAGGACAC-----AATTTTGTTTTTATTTTTA-------------C------------GC-----GT-TTCATTTCAAACTAA---TA-GA--CTATATT-TTATTTGCAAAAG--GGTACAATGTGG------TCGCCACGGGTTGTCCTACTTT------TCCTGGCTC-TTGCATT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTGG------TCGCCACGGGT..................................	19	1	1.00	1	0	0	1	0	0	0	0
.....................................................................AGTAGTTTAATGTGGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0

droYak3

AAA--TTCATGT------------TTAAAATGTACATC-------------------TG--TCTTAAAAAGTCGTCTAATGT-G------------CTA----GA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATATTCAAATTAAAATACATGACATTACGAACCCTTCTTAGGTTGTTCTATAGTTAATCTTTCA--TAGTTACACGGGTCAA--ATTGTAC------------------------------------------------------------------AATTTCCATTTTAAAACTAAATTCTTGCCAAGTGGTCTTGATTGCGTA-TTCGTGTTT--AATAAGGAAAC-----AATATAGTTTTTATTTTTA-------------A------------GC-----GT-TTCATTTATAACTAA---TA-GA--GTGTATT-TTACTTAAAAAAG--GGTACAATGTGG------TCACCGCGGGTTGTACTCCTTT------TCCTGGCCC-TTGCACT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGG------TCACCGCGGGTTGTACTCC..........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------TCACCGCGGGTTGTAC.............................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AAA--TTACAAT------------AT-------ATACT-------------------TT---TATAT--TACTTTTATAAAGCGCT---TAGTA----------------------------------------------------------------------------ATCTTTTGCGACCCTAAACTTACGCTCGTGCTTTGGTTATTAAATAAAAACAAATCTTCAACGAAAAAAACACAATTTA-ACA------T-TCAAAG---------------------------------------------------------------------------------------------------------------------------TGCGAACTTTAA-------------------------------------------------------------------------------------AATTATCATCAAATATTTTTTAT---GTA-CATATATTCCGAAAA-----------------AGTTTTTAGCAAAA-------------C------------AT-----G--------TTATATTAA---TCCAA--AATCATA-TTACTTTTC-AAG--GGTACAATGTGG------TCACCACTGTTCGCCTTGGTTT------GCCTGACCC-TAGCCTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTC--A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTAT---TT-AA--ATTCCCA-TTTATTTTCAGAG--GGTAAAATGTGG------TCGCCGTTGGTCGTTGTAATCT------TTCTGGCCC-TGGCCCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TGACTTTTTAAAA--GGTAAAATGTGG------TCGCCATTGGTCCTTCTAGTCT------TCTTGACCC-TGGCCGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAA--GTGCTTG------------GTAGATTA-----------------------------------------------------------------------------------------------------------------------------------------------TTACAAGCCTTAATGAATA----------------------------TTTATTTAATGAAGAAAAATCCATTTA-ACCAATCTAT-------------------CTAAGAAATTCTTATTTTACATTTTCCTGCAAAATTTA----------------------TAATTCTATTTAAC----TC-----------------------------------------------------------------------------------TGT------------TGCATATCTTACATTTTTA------------------------------------------------------TA-----------------TC--------A--AAATTTAAATTTTCCCTTTCTTTTATTTTGTTCTGTTTTAATTTAGATGTAA-T-TT-AAATATATATT-TTTCTTTTTAGAG--AGTGCAATGTGG------TCGCCGCTGGTCGTTTTAGCCT------TCCTGACCC-TGGCCTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATA--TAATTCA------------TTAAAATAAATGCT-------------------TT---CCTATAATGTTGTTTTAAAAAACTGT--------------------------------------------------------------------------------------TTTACGAATCGTTACTAACA----------------------------ACTATAAAATTAAAAAAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------GTAATCTATGTACATTCAGTAAGAAACGAAAACGATATCTCTTATTCG-----------AACTTTTTGAG-----------------------------------------------------TGCCTTTTATTCCATATA-----------------AC--------A--ACATATTCTC----T----TTGATTTCT-----------------AGATTAA---TC-GAATAGAAATT-GTACTTTTCGGAG--AAAACAATGTGG------CCTCCGCTGGTCATTCTAGTCT------TCCTGGCCG-TGTCCTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAA--TTGATCGAATAAATAGAAAGTAGAGTGTATACT-------------------TTATTTATA---------------TTTTTAT--TTTTTTGTG----TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTTTTCAATG-------------------------------TATTTAATGGTT--------TTAAAAGCAAACAAAATACGAACTGTAAAT--------------------------------------TGT------------TGGGTT------------------------------------------------------ATTTCATTCTGAATA-----------------GG--------A--ATATTTAAGTTTAACGAATTCATTTTCT-----------------AGACTTG---GT-AA--AAGTGTT-TTTCTTTTCAGGG--TACAAAATGTGG------TCGCCGGTGGTTGCCTTACTGT------TCCTGACCC-TGGTTGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATC--TGTGAAT------------GTAAAGTGTTTAAC-------------------A----------------------------------------------------------------------------------------------------------------ATTGTTTACAAAATAT----------------------------TAAATAAATATTTCCTTTGAAGAATTTAAAATTTATATA------TTTAAAAGCGTGAAAAATTGTTTAAAAATAATTATATATAAATTTCCT------------------------------------------------------------------------------------TCCAAGA-----------ATATAAAATGTATACAATTTTTCTTTTTTCCTCGACTATAAAATATTTTATA-----------------------------------------------------TATATT----------------------------------------------------TTTCTCCTTCATTAAATTTCTT--AA-ATAATTAAAAATAATATC-T-TAAT-ATCTTT-GTTTCTTCTTTAGATCTCAAAATGTGG------TCACCGCTGGTTCCTGTCTTTCTGTTAATCCTCACCC-TAGCCGG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TAA--ATGTGTTG-----------AAAAAATCGTACTTCAAAACAGTTTACGAGAA-------------------------------------------GAGTTTTCACTTCCAAGAAAAGTTGAATACTACTTCAAAGCTTTTCATTGATAATTTCACGTTTTTTTTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCT--A-------------------T-T-CTA--ATTGCT-AGTTTTTTTATAG-----ATTATGTGG------TCGCTACTAGTTGCTCTAGTTT------TGCTCACCC-TCTCC--	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGTGG------TCGCTACTAGTTGCT..............................	23	1	1.00	1	1	0	0	0	0	0

droBip1

TAA--GTAACTG------------AAAAAACGGACTTTTTATTCGGATTATTAGATAAT--CCTTA---------------TTTTTGTTTTTTTTTTC-GATTTTTTATTTTC-GGATTATTTAACAATTTCTTCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTTTAACTGCTTA-TATT-----------ATGTCAAATTTCGA--------ATAATT---------------------------------------------TAAATTTGTAAC-T-GAT--AACGTTTTATTTTTTCATAG--ACTATTATGTGG------TCGCAACTGGTCGCCTTAGTTT------TGCTCACCCATAGCATC	Size	Hit Count	Total Norm	Total
No Reads

dp5

ATC--TAAAAGT------------GTTCCGTTTTTTCG-------------------A----------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACCCGTA----GAAACATGTGT------TCGTCGCTGCTCACCGTAGTGCTGTTGGGGCTGACCC-TGGCCCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGTGCTGTTGGGGCTGACCC-.......	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGTAGTGCTGTTGGGGCTGAC..........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TCGTCGCTGCTCACCGTAGTG........................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT------TCGTCGCTGCTCACCGTAGTGC------TGTTGGGGC-TGACCCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGC------TGTTGGGGC-TGACC..	18	2	1.50	3	3	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCACCGTAGTGC------TGTTGGGGC-TGAC...	27	2	0.50	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCACCGTAGTGC------TGTTGGG..........	21	2	0.50	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGC------TGTTGGGGC-TGAC...	20	2	0.50	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACCGTAGTGC------TGTTGGGGC-TGACCC.	28	2	0.50	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGTAGTGC------TGTTGGGGC-T......	21	2	0.50	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCACCGTAGTGC------TGTTGG...........	23	2	0.50	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGC------TGTTGGGGC-TGAC...	18	2	0.50	1	0	1	0	0	0	0

droMoj3

TTAAATTTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCATGCCAACAGAAGCAA------------------------------------------------------------------AACACAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA----AAATAATGCTGCAGTTGCGTTCGCTGGGAGCGCTGCTGC------CGCTGCTGC-TATTGCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......TTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCATGCCAACAG..........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

dsi_10577

2l:18379550-18379699 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-16.9	-16.7	-16.6