ID:

dsi_10568

 Coordinate:

3l:7693327-7693476 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.7 -29.6 -29.5

Flybase annnotation

CDS [3l_7692874_7693326_+]; exon [3l_7692865_7693326_+]; intron [3l_7693327_7710111_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCAATCTCGTCTGGCCAATGCAACCGACACATCAGCCAGCACAGCAGCAGGTTAGTACAGTAATCTCTGTGCCATGGAGAATTCTCGGAATTTTAATTCTCTAGTAATGCAAAATATTTAAAGTTATGAGGAAATGCAGTTAATACTGTGTAATTTAATTAACAATTCTTTCTGAATTCAAGTTCACTTTTCTATGACTTGGAATTCCCTGAAGTTCTGTTACGCGAGTGCCCACTGTATCACTTTATGC
**************************************************....((((((......))))))(((((((((((((((.((((((((.....................)))))))).)))))).(((((((....)))))))............(((((.....))))).........)))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
TCAATCTCGTCTGGCCAATGCAACCGA............................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................AAAGTTATGAGGAAATGCA................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................ACTTGGAATTCCCAGTA..................................... 17 2 20 0.55 11 9 0 1 0 0 1
....................................................................................................................................................................................................ACTTGGAATTCCCTG....................................... 15 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................................................ACTTGGAATTCCCGGAAC.................................... 18 2 6 0.33 2 2 0 0 0 0 0
....................................................................................................................................................................................................ACTTGGAATTCCCAGTAG.................................... 18 2 6 0.17 1 1 0 0 0 0 0
...................................................................................................................................................................................................AACTTGGAATTCCCAGTAGT................................... 20 3 7 0.14 1 1 0 0 0 0 0
................................................................................................................................................................................................TACGACTTGGAATTCCCA........................................ 18 2 9 0.11 1 0 0 1 0 0 0
...................................................................................................................................................................................................GACTTGGAATTCCCA........................................ 15 1 10 0.10 1 1 0 0 0 0 0
.................................................................................................................................................................................................AAGACTTGGAATTCCCA........................................ 17 2 17 0.06 1 1 0 0 0 0 0
.............................................................CAACTCTGTGCAATGGAGA.......................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0
.........TCTGGCCAATGAAAC.................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

AGTTAGAGCAGACCGGTTACGTTGGCTGTGTAGTCGGTCGTGTCGTCGTCCAATCATGTCATTAGAGACACGGTACCTCTTAAGAGCCTTAAAATTAAGAGATCATTACGTTTTATAAATTTCAATACTCCTTTACGTCAATTATGACACATTAAATTAATTGTTAAGAAAGACTTAAGTTCAAGTGAAAAGATACTGAACCTTAAGGGACTTCAAGACAATGCGCTCACGGGTGACATAGTGAAATACG
**************************************************....((((((......))))))(((((((((((((((.((((((((.....................)))))))).)))))).(((((((....)))))))............(((((.....))))).........)))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
................................................................................................................................................................................AAGTTCAAGTGAAAATATA....................................................... 19 1 3 0.33 1 0 1 0
AGTTAGAGCACACCGAT......................................................................................................................................................................................................................................... 17 2 6 0.33 2 0 1 1
AGTTAGAGCACACCGATT........................................................................................................................................................................................................................................ 18 2 5 0.20 1 1 0 0
AGTTAGAGCACACCG........................................................................................................................................................................................................................................... 15 1 10 0.20 2 2 0 0
.....................................................................................................................................................................................CAAGTGACAAGATTCTG.................................................... 17 2 6 0.17 1 1 0 0
......................................................................TGGTACCTCTTAAGATCGT................................................................................................................................................................. 19 3 14 0.14 2 0 0 2
....................................................................................................................................................................................................................................TCAGGTGACATAGTG....... 15 2 20 0.05 1 0 1 0

Generated: 04/24/2015 at 10:27 AM