ID:

dsi_10543

 Coordinate:

3l:18443812-18444091 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.7 -15.5 -15.4

Flybase annnotation

intron [3l_18444130_18456790_-]; exon [3l_18444092_18444129_-]; CDS [3l_18444092_18444129_-]; exon [3l_18443685_18443811_-]; CDS [3l_18443685_18443811_-]; intron [3l_18443812_18444091_-]

No Repeatable elements found

Sense Strand Reads

------------######################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATTTGCTCATAGATCTACACGCCACCGCCACTGGACATCAAAATGGAAATGTAAGTATTATGAAACTTGATGGTTGATTGATAGCTGGAACTATGATGCATTTGATTTTATAGCAAATATAAAAACAAATGTTAAAGACGCATGAAACAATTGAATTATCCGATGATGATTGCTTTTTCTTTGATCTTTATATATTCGTTTTATTCAATTTAATGATCACGCATAAACGTCTAATTAATTCAATTCAAATCAACCGATATTGTTGTGCATAATGTTCCTTTACACATTTCACTATTCCTTTCTAACTTAAGACTTTAATTTTAATTACAGTGAAATTGGCGAACAACCGCAGCCACCGGTGAAGTGCTCCAACTTCTTTT
********************************************************************************((((......))))....((((((.(((((((.....))))))).))))))(((((((.(((.......((((.......))))......)))....)))))))..************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
..............................................................................................................................................................TCCGATGATGATTGCTTTTTCTTTGATC.................................................................................................................................................................................................. 28 0 1 3.00 3 2 0 0 0 1 0 0 0 0
.....................................................................................................................................................ATTGAATGATCCGGTGA...................................................................................................................................................................................................................... 17 2 8 1.38 11 0 0 7 3 0 0 1 0 0
.............................ACTGGACATCAAAATGGA............................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................ATAGCTGGAACTATGATGCATT...................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................GAAATTGGCGAACAACCCCAGCCACC....................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TCCGATGATGATTACTCTTTTTT....................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................GAACAACCCCAGCCACCGGTGA.................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........ATGATCTACACGCCACCGCCACTG........................................................................................................................................................................................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................ATTGCTTTTTCTTTGATC.................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................TACTTTGATCTTTCTATATT........................................................................................................................................................................................ 20 2 3 0.33 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................ATTGAATGATCCGGTGAAG.................................................................................................................................................................................................................... 19 3 16 0.25 4 0 0 0 3 0 0 1 0 0
......................................................................................................................................................................................................................................................AACTCAACCGTTATTGTAGT.................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................TTTGAATTAACCGATGACGA................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................ATTGGTTTATCCGAAGATG.................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TAAACGAGTATCTAGATGTGCGGTGGCGGTGACCTGTAGTTTTACCTTTACATTCATAATACTTTGAACTACCAACTAACTATCGACCTTGATACTACGTAAACTAAAATATCGTTTATATTTTTGTTTACAATTTCTGCGTACTTTGTTAACTTAATAGGCTACTACTAACGAAAAAGAAACTAGAAATATATAAGCAAAATAAGTTAAATTACTAGTGCGTATTTGCAGATTAATTAAGTTAAGTTTAGTTGGCTATAACAACACGTATTACAAGGAAATGTGTAAAGTGATAAGGAAAGATTGAATTCTGAAATTAAAATTAATGTCACTTTAACCGCTTGTTGGCGTCGGTGGCCACTTCACGAGGTTGAAGAAAA
**************************************************************************************************************************************************************************************************((((......))))....((((((.(((((((.....))))))).))))))(((((((.(((.......((((.......))))......)))....)))))))..******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M053
female body
 M023
head
 SRR618934
dsim w501 ovaries
 SRR902009
testis
.......................................................................................................................................................................................................................................................................................................GGGAAAGATTGAATT...................................................................... 15 1 11 1.73 19 11 8 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................ATGTGTAAAGTGATGATG.................................................................................. 18 2 9 0.11 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................TTACTAGAGTGTATTTGCAT..................................................................................................................................................... 20 3 10 0.10 1 0 0 1 0 0 0 0 0
................................................................................................................AGCTTATATTTTTGTTGACAA....................................................................................................................................................................................................................................................... 21 3 12 0.08 1 0 0 0 1 0 0 0 0
.......................................TGTTACTTTTACATTCAAAATA............................................................................................................................................................................................................................................................................................................................... 22 3 15 0.07 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................................................TGTTGGCGTCGGTGTCT..................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0
........................................TTCACATTTACATTCATTATA............................................................................................................................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................................................................AGGAAATGTCTAAAGTTA....................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:18443762-18444141 - dsi_10543 ATT-----TGCTCATAGATCTACACGCCA-------CCGCCACTGGACATCAAAATGGAAATGTAAGTATTATGA---------------------------------------AACTTGAT-----------GGT---TGA------TTGA-TAGCTGGAACTATGATGCATTTGATTTTATAGCAAATATAAAAACA---------------AATGTTA----------AAGACGCATGAAACAATTGAATTATC--CGAT------------------G------------------------------------ATGATTGCT-TTTTCTTTGAT-------------------------------------------------------------------------CTTTATAT-A---TTCG------T--TTTATTCAATTTAATGA----------------------------------------------------------------TCACGCATAAACGTCTA--ATTAATTCAAT--------------------TCAAATCAACC-------GAT----------------------------------------------------------------------------ATTG-------------------------------TTGTGCATAATGTTCCTTT---------------ACACATTTCACTATTCC--------------------TTTCTAAC----------TTAAG-ACTTTAATTTTAATTACAGTGAAATTG---GCGAACAACCGCAGCCACCGGTGAAGTGCTCCAACTTCTTTT
droSec2 scaffold_19:788854-789234 - ATT-----TACTCATAGATCTACACGCCA-------CCGCCACTGGACATTAAAATGGAAATGTAAGTATTATGA---------------------------------------AACTTTAT-----------GGT---TGA------TCGATTAGCTGTAAGAACGGTGCATTTGATTTTATAGAAAATAGAAAAACA---------------AATGTTA----------AAGACGCATGAAACAATTTAATTATC--CGAT------------------G------------------------------------ATGAATGCC-TTTTCTTTTAC-------------------------------------------------------------------------CTTTATAA-A---TTCG------T--TTTATTCAATTTAATGA----------------------------------------------------------------TCACGCATAAACTTCTA--ATTAATGCAAT--------------------TCAAATCAACC-------GAA----------------------------------------------------------------------------ATTG-------------------------------TAGTGCATAATGTTCCTTT---------------ACACATTTCACTATTCC--------------------TTTCTAAC----------TTAAG-ACTTTAATTTTAATTACAGTGAAATTG---GTGAACAACCCCAGCCACCGGTGAAGTGCTCCAACTTCTTTT
dm3 chr3L:18824672-18825101 - ATTCTATTTGCTCATAGATCTACACGCCA-------CCGCCACTGGACATCAAAATGGAAATGTAAGTATTACAACTTGATTGT------AATACCATTGATGGTTACCATTGTAACTTGAT-----------GGT---TGA------TTGAATGGCAGGAACAATGATGCATT----TTTATAGGAAATATAAAAACA---------------AAAGTTA----------AAGACGCGTGAAACAATTGAATTATC--CGAT---------------------------------------------------------------------ATTTGAT-------------------------------------------------------------------------CTTTATAA-A---TTCG------T--TTTATTCAATTTAATGCATTTAATTTATTTTT----------------------------------------------CATTCATGTATAAACGTCTC--TAAAATTCAAT---TATT---T---TTAT--TCAAAGCAACC-------GAA----------------------------------------------------------------------------ATGG-------------------------------TTGTGCTTAATGTTCCCTTA-------------GACACATTTCACAAATCC--------------------TTTCTAAC----------TTGGG-AATTTAATGTTAATTACAGTGAAATTG---GCGAACAACCCCAGCCTCCGGTGAAGTGCTCCAACTTCTTCG
droEre2 scaffold_4784:15107526-15107867 + ATT-----TGCTTATAGATCTACACGCCG-------CCGCCACTGGACATCAAAATGGAAATGTAAGTATTTTAA---------------------------------------AGT-TTCT-----------GGT---TGA------TTGA-TAACAGGAT--------------------------------------------------------------------------------------TACTTTAGC--CGAT------------------G------------------------------------ATGAATGAT-TTTTCGTTGAT-------------------------------------------------------------------------CCTTATAA-G---TTCG------T--TTTATTCAATTTAATTA--C-----CATTTCT----------------------------------------------CATTCACCTATAAGCGTCCA--ATTAATTCAAT---CAT-----ATGTTA-GG-CAAATCAACC-------GAA----------------------------------------------------------------------------ATTGCAC------------------------------AAGCAAAATTATCTTTTA-------------GATACTTTTCACAATTTC--------------------TATCTAAC----------TGTGG-AATCTCATTTCGATAACAGTGAAATTG---GCGAGCAACCCCAGCCGCCGGTGAAGTTCTCCAACTTCCTGG
droYak3 3L:15246369-15246732 + dya_802 ATT-----TGCTTATAGATCTACACGCCA-------CCGCCACTGGACATCAAAATGGAAATGTAAGTATTACAA---------------------------------------AATGTCGT-----------GCT---TGA------TTGA-TAACAGGAACGTGAATGAATTTGATTTAATAGCGAATAGAAAATAA---------------TATTTGA----------AAAATT-------------CATTATT--CGAT------------------T------------------------------------ATAAATGAT-TTTTCTTCGAT-------------------------------------------------------------------------ACTTATAATA---TTAA------TAACTTATTCAATTTAATGA--C-----CATTTCT----------------------------------------------CATTCACGTATAAACGTCTT--ATTAATTCAAT--------------------------CAACC-------GAA----------------------------------------------------------------------------ATTG-------------------------------T-------------CTTTAA-------------GATACTTTTCATAAATAC--------------------TTTCTAAC----------TTTGG-TATCTTATTTCATTCACAGTGAAATTG---GCGAACAACCACAGCCACCGGTGAAGTGCTCCAACTTCTTCG
droEug1 scf7180000409471:665510-665899 + ATT-----TGTTTATAGATCTACACGCCT-------CCGCCACTGGACGTCAAAATGGAAATGTAAGTATTATGA---------------------------------------AATGTGAT-----------AGA---TGA------TTGA-TAGCAGGCATTATGA---------TTTTATTTGGAATT-AAAAATA---------------AAAATTGAATTCGAAAT--------------GG---------------TT------TAATGTCTTAAATGAAATTATTCAATGATGAAAGGTTTTTTAATTGAT----------------------------------------------------------------------------------------------CTTTTT-CTT---TG-ATCTTAAT--TTTATACAATTTAATTA--A------ATTTGTAATTTTTAATTGAATTAC----------------------------------------------------------------------------------CAAGTCAATC-------AAA----------------------------------------------------------------------------AT--CACAAG-------------------------CAATACAGATTGATCCT---------------------A---------------GTTAGTTAAATAAAGTAATTTTTATTA------ATTTTGCCATATTTCTTATATCAACAGTGAAATCG---GTGAACAACCCCAACCACCTGTGAAGTGCTCAAACTTCTTCT
droBia1 scf7180000302529:677525-677975 + ACT-----TGCCTGCAGATCTACACACCA-------CCGCCGCTAGACGTCAAAATGGAAATGTAAGTATCAAGA---------------------------------------AACGTGAT-----------AGT----GG------TTGA-TAGCAGGCATGATGATGAAATGGCTTTTATTTATTATAC--AAATAAA-------------ATTTGGA----------AAGAAG--TGAGACACTTAA------------------------------ACGAAAATAAACAATGTTGTACGCATTTTTGTTTGAT----------------------------------------------------------------------------------------------CCTTTTG-TA---TT-A------T--CTTGG-----------------------CATT-----------------------------------------GA----ATACATG--AATGTGTCGCTAATTTATTCAGT---TATATCGTATATTT-GT-CAATGTAATT----------------GGAAATTTGACATGAAAGAAATTAACTAATTACCTAATA-------------------------------GT--CACAATTAATACCAAAAAAGCCATATTG---T-------------TTTTTAGAACATT--------TACATTTAAT-AATTC--------------------TTTCTAATTA------A-TTTTT-AATTTCATTGTATCCACAGTGAAATTG---GAGAACCACCCCAACCACCTGTGAAGTTTTCCAACTTCATCT
droTak1 scf7180000415184:230782-231124 + ATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATTGGCTTTTATTTATAAATG--AAATA---------------AATGTTG----------ACGAAAAAATAAATAATTATTTTATC--------------------------AAAATTAAGCAGGAATGGATGCCCTTTTCCTCGAC----------------------------------------------------------------------------------------------CTTTT-ACTT---TT-A------T--TTTGT-----------------------TTCC----------------------------------------------TATTTGTTTGAAATTGCCAATTTTTTA-TCAAT---TAAT---T---ATAT--TTAAAAAAAGT----------------AATAACTCAAGATAAAAAGGAATAATATATTACAGAAAAGTA------------------------------------------------------------------TTCTTACATTACCCTTAGAAAACT--------TAAATTTGATTAATTC--------------------TTCGTAACTA------ATTTTAG-AATTTTATTTTATCCACAGTGAAATTG---GAGAACCACCCCAACCACCGGTTAAGTGTTCCAACTTCTTCG
droEle1 scf7180000490993:1737206-1737627 - ATT-----TGCTTTTAGATCTACACACCA-------CCTCCGCTGGACATCAAAATGGAAGTGTAAGTATTATTA---------------------------------------AATATGAT-----------AAT---TGACTTTAAACGA-TTGCCTGAATGATGATGGATTTGGTTTTATTTGGGACA---AAACAAATTTTTGGGGAAAAAA----A----------GAAATGTATGCAATAAATT-ATTATCATTAAA------------------G------------------------------------ATAAATGGC--CTTCTTTGATCTATATTCTATTATATTTTTTTGTTGTCGGTTTGGTGCCACATTAATTGGTAATAATTCATTTAATTATATT--------------------------------------------------------------------------------------ACTGTCCA----TTAAATA----AA--------------------------TCAA-AA-----ATG-TT-GG-TAAA--------------------------------------------------------------------------------------TTTTAGACTT-------------------------------TG--GCA--------------------------------------------ATTGTTAT----AAAAATATTTTTTTACTT------ATTTTAA-ATTTGTTTTGAATCCACAGTGAAATTG---GTGAGCCACCCCAACCACCTGTGAAGATGTCCAACTTCTTCG
droRho1 scf7180000779212:21553-21914 + TTT-----TTCTTATAGATCTACACACCA-------CCTCCGCTGGACATCAAAATGGAAATGTAAGCGTTATAA---------------------------------------AATATCAT-----------AAT---TGATTTTAAACTA-TTCCATGAACGATGATAGATTTGGGTTCATTAAG----------------------------------------------GATGACTGCAATAAT------ATC--TAAT------------------A------------------------------------ATATATATTGATCTCTTTAAC-----------------------------------------ATTTATGGTTGATAATTAGTTTAATTATAAAA----------CATTTGA------A--TCAATTTAATTGAAAGG--------------------------------------------TGACGA----AAAAATT----AA--------------------------T--------------------------CAAT-------------------------------------------------------------------------CATATCCATTTTAAACTG-------------------------------TGGAGCA--------------------------------------------CTTGATAC----AAAAAA---TATTAAT----------TTAAA-AATTTGTTTGTATCCACAGTGAAATTG---GTGATCCACCCCAACCCCCTGTGACGTTGTCCAACTTCTTGG
droFic1 scf7180000453824:182604-182988 - ATT-----TGCTTATAGATCTACACCCCT-------CCTCCGCTGGACGTCAAAATGGAAATGTAAGTATTACAA----------------------------------------ATATGAT-----------AAG---TC--TTAA-TCGGATAGCAGGAATAATGATTTGTT----GTTATTTTAA------------------------------TGA-----------AAAAG--TG----------ATTACC--TGA-------------------AATCAATTAAATAATGATTGATGCTTATTTCTTTTAT----------------------------------------------------------------------------------------------TTT----------------------------------------------------------------------------------ACTGTACA----TATTATTTATTGATGA-AAAATGTCTT----TATTTCAAT---CTTT---T------T--TCACAACTTCGGAAAAACAAATTCA-------------------------------------------------AAAGTAGAACAAATCAGAATTAAAAC-------------CTT-----------------------------------AAAA----GAATGGGATACAATTTGCAAGTCG--------------------TTCTTTACTG------ATTTT-------ATGTTTTTTCTACAGTGAAATTA---ATGAACAACCCGAACCACCTGTAAAGTGCTCCAACTTCTTCG
droKik1 scf7180000302248:146887-147110 + ATT-----TATTTTTATATTTTTTTTATTTATTTATTTATTTATTCATTTTAATACATAAAAAAAAATAA--------------------------------------------AATAATAA-----AT----AA----------------------------------------------------------------------------------ATAA-ATTTATATT--------------AA---------------TTTTTTATT------------------------------------------------------------TATTTA------------------------------------------------------------------------------------------------------------------------TTATTTT---------------------------------ATTTTACA----TTATATA----TA----TATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAT--------------------TTTTTTACTA------ATTTTTT-AAT---TTTTATTCCACAGTGAAATCG---GTGAACCGCCTCAACCTCCGGTAAAGTGTTCCAATTTCTTTG
droAna3 scaffold_13337:18608090-18608161 + ATT-----TTCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTTCCAGTGAAATTGGTAGCGAACCACCGCCACCACCAGCAAAGTGCTCCAACTTCTTTT
droBip1 scf7180000396741:1798993-1799056 + GTC-----TCTTTATAGATCC---TACGA-------CCACCGACGGACATCAAAATGGAAATGTAAGTGA--------------------------------------------AATATGAA-----------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:4131449-4131835 + ATT-----TACTTACAGATCTATACCCCA-------------GCAGACATCAAAATGGAAGTGTAAGTATTGCGATTTGTATATACATATAAAGTAATTGATA--T--------GATG---TGATAGATTGATGGTTTTTGA------TCGAT---------------------------TCTGGAAAATAAAAGAGTA---------------AAAGTTA-GCTTGAAGT--------------AG---------------TATTTTAGTAAGATCTAGAAAGCTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCCA----GAACTGCTG---GGTCCC---TCAAATACC----ATATTGAGAA-AAATTCTTTTTT------------------------------------------AAAGGAC---AACATA--------------------AAT-AGA------------GTACTCTTGCGGTAAATGATATCGCTAATAAAAT-------------GTT-------------GTA---------------------------GAATCAACTCTA---------------ATTAGTA-------------------TATTATTA-----TC--GTCTCTCTAATCGACAGTGAAATCG---GTGAACCACCACAGCCGCCAGTGAAATGTTCCAACTTCTTCA
droPer2 scaffold_9:2421021-2421411 + ATT-----TACTTACAGATCTATACCCCA-------------GCAGACATCAAAATGGAAGTGTAAGTATAGCGATTTGTACATACATATAAAGTAATTTAAA--T--------GATG---TGATAGATTGATGGTTTTTGA------TCGAT---------------------------TCTGGAAAATAAAAGAGTA---------------AAGATTA-GCTTGAAGT--------------AG---------------TATTTTAGTAAGATCTAGAAAGCTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCCA----GAACTGCTGGGGGGTCCC---TCAAATACC----ATATTGAGAA-AAATTATTTTTT------------------------------------------AAAGGAC---AACATA--------------------AATAAGA------------GTACTCAGGCGGTTAATGATATCGCTAGTAAAAT-------------GTT-------------GTA---------------------------GAATCAGCTCTA---------------ATTAGTA-------------------TATTATTA-----TC--GTCTCTCTAATCGACAGTGAAATCG---GTGAACCACCACAGCCGCCAGTGAAATGTTCCAACTTCTTCA
droWil2 scf2_1100000004768:72624-72752 - GTT-----TACTTTTAGATTTATCAACCA-------------GCCGATATCAAAATGGAAGTGTAAGTATGA------------------------------------------GACGGGAC-----------AGA---TAA--------------------------------------------------------------------------TGTTA----------ATG---TATG-----------------------------------------------------------------------------ATGA----------------------------------------------------------------------------------------------------GAT-------------CTAATTCAATTTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAGGGTCAAGACCAATAGTTAAA----------------
droVir3 scaffold_13049:18110636-18110737 + TTC-----ATTTT-TAAATTAAAATATAT-------CTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTA------A-----CT--TTGTATTAAATTTGCAGCGAAGCAG---CAGATCCCGTAGAACCGCAAGCCCGCTGGAGCACCTTTTTCG
droMoj3 scaffold_6680:23683172-23683227 + T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAGAGAAGCGG---CCGAGCCTGTAGAACCGCATGCACGGTGGGGATCTTTTTTTG
droGri2 scaffold_15110:24162875-24162989 + ATT-----TGCTTGCAGATTTATC-------------------CGGATTTTAAAATGGAACTGTAAGTTGGAACA---------------------------------------AATA-------------------------------------------------------------------------------------------------------------AC---------------------------T--TGATTTTCGATT------------------------------------------------------------TTATTA------------------------------------------------------------------------------------------------------------------------CTATTA-----------------------------------------------------------C-------------------------------------GTG-TA-GG-TAACTTAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAT----ATAAATA--------------------------AA---T-----------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATT-----TGCTCATAGATCTACACGCCA-------CCGCCACTGGACATCAAAATGGAAATGTAAGTATTATGA---------------------------------------AACTTGAT-----------GGT---TGA------TTGA-TAGCTGGAACTATGATGCATTTGATTTTATAGCAAATATAAAAACA---------------AATGTTA----------AAGACGCATGAAACAATTGAATTATC--CGAT------------------G------------------------------------ATGATTGCT-TTTTCTTTGAT-------------------------------------------------------------------------CTTTATAT-A---TTCG------T--TTTATTCAATTTAATGA----------------------------------------------------------------TCACGCATAAACGTCTA--ATTAATTCAAT--------------------TCAAATCAACC-------GAT----------------------------------------------------------------------------ATTG-------------------------------TTGTGCATAATGTTCCTTT---------------ACACATTTCACTATTCC--------------------TTTCTAAC----------TTAAG-ACTTTAATTTTAATTACAGTGAAATTG---GCGAACAACCGCAGCCACCGGTGAAGTGCTCCAACTTCTTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................TC--CGAT------------------G------------------------------------ATGATTGCT-TTTTCTTTGAT-------------------------------------------------------------------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.00300200010000000000
.........................................ACTGGACATCAAAATGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000001000000000
.......................................................................................................................................................A-TAGCTGGAACTATGATGCATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................ATTGCT-TTTTCTTTGAT-------------------------------------------------------------------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
droSec2
ATT-----TACTCATAGATCTACACGCCA-------CCGCCACTGGACATTAAAATGGAAATGTAAGTATTATGA---------------------------------------AACTTTAT-----------GGT---TGA------TCGATTAGCTGTAAGAACGGTGCATTTGATTTTATAGAAAATAGAAAAACA---------------AATGTTA----------AAGACGCATGAAACAATTTAATTATC--CGAT------------------G------------------------------------ATGAATGCC-TTTTCTTTTAC-------------------------------------------------------------------------CTTTATAA-A---TTCG------T--TTTATTCAATTTAATGA----------------------------------------------------------------TCACGCATAAACTTCTA--ATTAATGCAAT--------------------TCAAATCAACC-------GAA----------------------------------------------------------------------------ATTG-------------------------------TAGTGCATAATGTTCCTTT---------------ACACATTTCACTATTCC--------------------TTTCTAAC----------TTAAG-ACTTTAATTTTAATTACAGTGAAATTG---GTGAACAACCCCAGCCACCGGTGAAGTGCTCCAACTTCTTTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCCAGCCACCGGTGAAGTGCTC...........2612.0020200
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACCGGTGAAGTGCTCC..........2012.0020020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCCAGCCACCGGTGAAGTGCTCC..........2711.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCCAGCCACCGGTGAAGTGCTCCA.........2611.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACCCCAGCCACCGGTGAAGT...............2411.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACCCCAGCCACCGGTGAAGTGCT............2711.0010010
.....................ACACGCCA-------CCGCCACTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCCAGCCACCGGTGAAGT...............2111.0010010
dm3
ATTCTATTTGCTCATAGATCTACACGCCA-------CCGCCACTGGACATCAAAATGGAAATGTAAGTATTACAACTTGATTGT------AATACCATTGATGGTTACCATTGTAACTTGAT-----------GGT---TGA------TTGAATGGCAGGAACAATGATGCATT----TTTATAGGAAATATAAAAACA---------------AAAGTTA----------AAGACGCGTGAAACAATTGAATTATC--CGAT---------------------------------------------------------------------ATTTGAT-------------------------------------------------------------------------CTTTATAA-A---TTCG------T--TTTATTCAATTTAATGCATTTAATTTATTTTT----------------------------------------------CATTCATGTATAAACGTCTC--TAAAATTCAAT---TATT---T---TTAT--TCAAAGCAACC-------GAA----------------------------------------------------------------------------ATGG-------------------------------TTGTGCTTAATGTTCCCTTA-------------GACACATTTCACAAATCC--------------------TTTCTAAC----------TTGGG-AATTTAATGTTAATTACAGTGAAATTG---GCGAACAACCCCAGCCTCCGGTGAAGTGCTCCAACTTCTTCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCCAGCCTCCGGTGAAGTGCTCC..........2615.0050000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCGGTGAAGTGCTCCAACTTC....2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTCCGGTGAAGTGCTCCAA........2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTGAAGTGCTCCAAC.......1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTCCGGTGAAGTGCTCC..........2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
............................A-------CCGCCACTGGACATCAAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCCAGCCTCCGGTGAAGTGCTC...........2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCCAGCCTCCGGTGAAGTGCTC...........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................CTACACGCCA-------CCGCCACTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGGTGAAGTGCTCCAACT......2111.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCCTCCGGTGAAGTGCTCCC.........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCGGTGAAGTGCTCCAACTTCT...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGG-AATTTAATGTTAATTACAG.....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAACAACCCCAGCCTCCGGTGAAGT...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................TGAT-----------GGT---TGA------TTGAATGGCAGGAACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCCAGCCTCCGGTGAA.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GCCACTGGACATCAAAATGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGG-AATTTAATGTTAATTACA......................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTCCGGTGAAGTGCTCCA.........2111.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAGTGCTCCAACTT.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGTGAAGTGCTCCA.........1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TGAT-----------GGT---TGA------TTGAATGGCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---GCGAACAACCCCAGCCTCCGGT....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CCGCCACTGGACATCAAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTCACAAATCC--------------------TTTCTAAC----------TTGGG-........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CACTGGACATCAAAATGGAAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AACAATGATGCATT----TTTATAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGGTGAAGTGCTCCAACTT.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAACCCCAGCCTCCGGT....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AAGACGCGTGAAACAATTGAATTATC--C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAGTGCTCCAACTTCTTC.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
......................CACGCCA-------CCGCCACTGGACATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAACAACCCCAGCCTCCGGTGAAG................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATAAACGTCTC--TAAA......................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCCAGCCTCCGGTGAAGTGCT............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCCAGCCTCCGGTGAAGTGCTCC..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCGGTGAAGTGCTCC..........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------TTGGG-AATTTAATGTTAATTA........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------TTGGG-AATTTAATGTTA............................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CTGGACATCAAAATGGAAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................TACACGCCA-------CCGCCACTGGACATCAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------TTGGG-AATTTAATGTTAATTA........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................CTGGACATCAAAATGGAAATGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTGAAGTGCTCCAACT......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................A-------CCGCCACTGGACATCAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTG---GCGAACAACCCCAGC...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTG---GCGAACAACCCCAGCCTCCGGT....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CA-------CCGCCACTGGACATCACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................ACTGGACATCAAAATGGAAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TGATTGT------AATACCATTGATGGTTACCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AACAATGATGCATT----TTTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AT---------------------------------------------------------------------ATTTGAT-------------------------------------------------------------------------CTTTATAA-A---TTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCTACACGCCA-------CCGCCACTGGACATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TGGACATCAAAATGGAAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TAAAAACA---------------AAAGTTA----------AAGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droEre2
ATT-----TGCTTATAGATCTACACGCCG-------CCGCCACTGGACATCAAAATGGAAATGTAAGTATTTTAA---------------------------------------AGT-TTCT-----------GGT---TGA------TTGA-TAACAGGAT--------------------------------------------------------------------------------------TACTTTAGC--CGAT------------------G------------------------------------ATGAATGAT-TTTTCGTTGAT-------------------------------------------------------------------------CCTTATAA-G---TTCG------T--TTTATTCAATTTAATTA--C-----CATTTCT----------------------------------------------CATTCACCTATAAGCGTCCA--ATTAATTCAAT---CAT-----ATGTTA-GG-CAAATCAACC-------GAA----------------------------------------------------------------------------ATTGCAC------------------------------AAGCAAAATTATCTTTTA-------------GATACTTTTCACAATTTC--------------------TATCTAAC----------TGTGG-AATCTCATTTCGATAACAGTGAAATTG---GCGAGCAACCCCAGCCGCCGGTGAAGTTCTCCAACTTCCTGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................CTACACGCCG-------CCGCCACTGGACATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
...................CTACACGCCG-------CCGCCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
...................CTACACGCCG-------CCGCCACTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
.........................GCCG-------CCGCCACTGGACATCAAAATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTG---GCGAGCAACCCCAGCCGCCGGT....................2611.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACCCCAGCCGCCGGTGAAG................2411.0011000000
.....................ACACGCCG-------CCGCCACTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
................GATCTACACGCCG-------CCGCCACTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
droYak3
ATT-----TGCTTATAGATCTACACGCCA-------CCGCCACTGGACATCAAAATGGAAATGTAAGTATTACAA---------------------------------------AATGTCGT-----------GCT---TGA------TTGA-TAACAGGAACGTGAATGAATTTGATTTAATAGCGAATAGAAAATAA---------------TATTTGA----------AAAATT-------------CATTATT--CGAT------------------T------------------------------------ATAAATGAT-TTTTCTTCGAT-------------------------------------------------------------------------ACTTATAATA---TTAA------TAACTTATTCAATTTAATGA--C-----CATTTCT----------------------------------------------CATTCACGTATAAACGTCTT--ATTAATTCAAT--------------------------CAACC-------GAA----------------------------------------------------------------------------ATTG-------------------------------T-------------CTTTAA-------------GATACTTTTCATAAATAC--------------------TTTCTAAC----------TTTGG-TATCTTATTTCATTCACAGTGAAATTG---GCGAACAACCACAGCCACCGGTGAAGTGCTCCAACTTCTTCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACAGCCACCGGTGAAGTGCTCC..........2611.00101000000000
................GATCTACACGCCA-------CCGCCACTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
............................................................................................................................................GA------TTGA-TAACAGGAACGTGAATGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCCACCGGTGAAGTGCTCCAA........2511.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATTG---GCGAACAACCACAGCCA.........................2511.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACAGCCACCGGTGAAGT...............2111.00100000010000
......................................................................................................................................................GA-TAACAGGAACGTGAATGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................A------TTGA-TAACAGGAACGTGAATGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACCGGTGAAGTGCTCCA.........2111.00100000010000
droEug1
ATT-----TGTTTATAGATCTACACGCCT-------CCGCCACTGGACGTCAAAATGGAAATGTAAGTATTATGA---------------------------------------AATGTGAT-----------AGA---TGA------TTGA-TAGCAGGCATTATGA---------TTTTATTTGGAATT-AAAAATA---------------AAAATTGAATTCGAAAT--------------GG---------------TT------TAATGTCTTAAATGAAATTATTCAATGATGAAAGGTTTTTTAATTGAT----------------------------------------------------------------------------------------------CTTTTT-CTT---TG-ATCTTAAT--TTTATACAATTTAATTA--A------ATTTGTAATTTTTAATTGAATTAC----------------------------------------------------------------------------------CAAGTCAATC-------AAA----------------------------------------------------------------------------AT--CACAAG-------------------------CAATACAGATTGATCCT---------------------A---------------GTTAGTTAAATAAAGTAATTTTTATTA------ATTTTGCCATATTTCTTATATCAACAGTGAAATCG---GTGAACAACCCCAACCACCTGTGAAGTGCTCAAACTTCTTCTSizeHit CountTotal NormTotal
No Reads
droBia1
ACT-----TGCCTGCAGATCTACACACCA-------CCGCCGCTAGACGTCAAAATGGAAATGTAAGTATCAAGA---------------------------------------AACGTGAT-----------AGT----GG------TTGA-TAGCAGGCATGATGATGAAATGGCTTTTATTTATTATAC--AAATAAA-------------ATTTGGA----------AAGAAG--TGAGACACTTAA------------------------------ACGAAAATAAACAATGTTGTACGCATTTTTGTTTGAT----------------------------------------------------------------------------------------------CCTTTTG-TA---TT-A------T--CTTGG-----------------------CATT-----------------------------------------GA----ATACATG--AATGTGTCGCTAATTTATTCAGT---TATATCGTATATTT-GT-CAATGTAATT----------------GGAAATTTGACATGAAAGAAATTAACTAATTACCTAATA-------------------------------GT--CACAATTAATACCAAAAAAGCCATATTG---T-------------TTTTTAGAACATT--------TACATTTAAT-AATTC--------------------TTTCTAATTA------A-TTTTT-AATTTCATTGTATCCACAGTGAAATTG---GAGAACCACCCCAACCACCTGTGAAGTTTTCCAACTTCATCTSizeHit CountTotal NormTotal
No Reads
droTak1
ATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATTGGCTTTTATTTATAAATG--AAATA---------------AATGTTG----------ACGAAAAAATAAATAATTATTTTATC--------------------------AAAATTAAGCAGGAATGGATGCCCTTTTCCTCGAC----------------------------------------------------------------------------------------------CTTTT-ACTT---TT-A------T--TTTGT-----------------------TTCC----------------------------------------------TATTTGTTTGAAATTGCCAATTTTTTA-TCAAT---TAAT---T---ATAT--TTAAAAAAAGT----------------AATAACTCAAGATAAAAAGGAATAATATATTACAGAAAAGTA------------------------------------------------------------------TTCTTACATTACCCTTAGAAAACT--------TAAATTTGATTAATTC--------------------TTCGTAACTA------ATTTTAG-AATTTTATTTTATCCACAGTGAAATTG---GAGAACCACCCCAACCACCGGTTAAGTGTTCCAACTTCTTCGSizeHit CountTotal NormTotal
No Reads
droEle1
ATT-----TGCTTTTAGATCTACACACCA-------CCTCCGCTGGACATCAAAATGGAAGTGTAAGTATTATTA---------------------------------------AATATGAT-----------AAT---TGACTTTAAACGA-TTGCCTGAATGATGATGGATTTGGTTTTATTTGGGACA---AAACAAATTTTTGGGGAAAAAA----A----------GAAATGTATGCAATAAATT-ATTATCATTAAA------------------G------------------------------------ATAAATGGC--CTTCTTTGATCTATATTCTATTATATTTTTTTGTTGTCGGTTTGGTGCCACATTAATTGGTAATAATTCATTTAATTATATT--------------------------------------------------------------------------------------ACTGTCCA----TTAAATA----AA--------------------------TCAA-AA-----ATG-TT-GG-TAAA--------------------------------------------------------------------------------------TTTTAGACTT-------------------------------TG--GCA--------------------------------------------ATTGTTAT----AAAAATATTTTTTTACTT------ATTTTAA-ATTTGTTTTGAATCCACAGTGAAATTG---GTGAGCCACCCCAACCACCTGTGAAGATGTCCAACTTCTTCGSizeHit CountTotal NormTotal
No Reads
droRho1
TTT-----TTCTTATAGATCTACACACCA-------CCTCCGCTGGACATCAAAATGGAAATGTAAGCGTTATAA---------------------------------------AATATCAT-----------AAT---TGATTTTAAACTA-TTCCATGAACGATGATAGATTTGGGTTCATTAAG----------------------------------------------GATGACTGCAATAAT------ATC--TAAT------------------A------------------------------------ATATATATTGATCTCTTTAAC-----------------------------------------ATTTATGGTTGATAATTAGTTTAATTATAAAA----------CATTTGA------A--TCAATTTAATTGAAAGG--------------------------------------------TGACGA----AAAAATT----AA--------------------------T--------------------------CAAT-------------------------------------------------------------------------CATATCCATTTTAAACTG-------------------------------TGGAGCA--------------------------------------------CTTGATAC----AAAAAA---TATTAAT----------TTAAA-AATTTGTTTGTATCCACAGTGAAATTG---GTGATCCACCCCAACCCCCTGTGACGTTGTCCAACTTCTTGGSizeHit CountTotal NormTotal
No Reads
droFic1
ATT-----TGCTTATAGATCTACACCCCT-------CCTCCGCTGGACGTCAAAATGGAAATGTAAGTATTACAA----------------------------------------ATATGAT-----------AAG---TC--TTAA-TCGGATAGCAGGAATAATGATTTGTT----GTTATTTTAA------------------------------TGA-----------AAAAG--TG----------ATTACC--TGA-------------------AATCAATTAAATAATGATTGATGCTTATTTCTTTTAT----------------------------------------------------------------------------------------------TTT----------------------------------------------------------------------------------ACTGTACA----TATTATTTATTGATGA-AAAATGTCTT----TATTTCAAT---CTTT---T------T--TCACAACTTCGGAAAAACAAATTCA-------------------------------------------------AAAGTAGAACAAATCAGAATTAAAAC-------------CTT-----------------------------------AAAA----GAATGGGATACAATTTGCAAGTCG--------------------TTCTTTACTG------ATTTT-------ATGTTTTTTCTACAGTGAAATTA---ATGAACAACCCGAACCACCTGTAAAGTGCTCCAACTTCTTCGSizeHit CountTotal NormTotal
No Reads
droKik1
ATT-----TATTTTTATATTTTTTTTATTTATTTATTTATTTATTCATTTTAATACATAAAAAAAAATAA--------------------------------------------AATAATAA-----AT----AA----------------------------------------------------------------------------------ATAA-ATTTATATT--------------AA---------------TTTTTTATT------------------------------------------------------------TATTTA------------------------------------------------------------------------------------------------------------------------TTATTTT---------------------------------ATTTTACA----TTATATA----TA----TATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAT--------------------TTTTTTACTA------ATTTTTT-AAT---TTTTATTCCACAGTGAAATCG---GTGAACCGCCTCAACCTCCGGTAAAGTGTTCCAATTTCTTTGSizeHit CountTotal NormTotal
No Reads
droAna3
ATT-----TTCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTTCCAGTGAAATTGGTAGCGAACCACCGCCACCACCAGCAAAGTGCTCCAACTTCTTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTAGCGAACCACCGCCACCACC.......................2811.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACCGCCACCACCAGCAAA.................2211.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCCACCACCAGCAAAG................1911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGTAGCGAACCACCGCC.............................2111.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGCCACCACCAGCAAAGTGCTCC..........2611.001000010
droBip1
GTC-----TCTTTATAGATCC---TACGA-------CCACCGACGGACATCAAAATGGAAATGTAAGTGA--------------------------------------------AATATGAA-----------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ATT-----TACTTACAGATCTATACCCCA-------------GCAGACATCAAAATGGAAGTGTAAGTATTGCGATTTGTATATACATATAAAGTAATTGATA--T--------GATG---TGATAGATTGATGGTTTTTGA------TCGAT---------------------------TCTGGAAAATAAAAGAGTA---------------AAAGTTA-GCTTGAAGT--------------AG---------------TATTTTAGTAAGATCTAGAAAGCTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCCA----GAACTGCTG---GGTCCC---TCAAATACC----ATATTGAGAA-AAATTCTTTTTT------------------------------------------AAAGGAC---AACATA--------------------AAT-AGA------------GTACTCTTGCGGTAAATGATATCGCTAATAAAAT-------------GTT-------------GTA---------------------------GAATCAACTCTA---------------ATTAGTA-------------------TATTATTA-----TC--GTCTCTCTAATCGACAGTGAAATCG---GTGAACCACCACAGCCGCCAGTGAAATGTTCCAACTTCTTCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACCACAGCCGCCAGT....................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA-------------------TATTATTA-----TC--GTCTCTCT..............................................................2111.0010100000000
.....................ATACCCCA-------------GCAGACATCAAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCG---GTGAACCACCACAGC...........................2011.0010100000000
................GATCTATACCCCA-------------GCAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................TCTATACCCCA-------------GCAGACATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................A-------------GCAGACATCAAAATGGAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCG---GTGAACCACCAC..............................1911.0010100000000
droPer2
ATT-----TACTTACAGATCTATACCCCA-------------GCAGACATCAAAATGGAAGTGTAAGTATAGCGATTTGTACATACATATAAAGTAATTTAAA--T--------GATG---TGATAGATTGATGGTTTTTGA------TCGAT---------------------------TCTGGAAAATAAAAGAGTA---------------AAGATTA-GCTTGAAGT--------------AG---------------TATTTTAGTAAGATCTAGAAAGCTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCCA----GAACTGCTGGGGGGTCCC---TCAAATACC----ATATTGAGAA-AAATTATTTTTT------------------------------------------AAAGGAC---AACATA--------------------AATAAGA------------GTACTCAGGCGGTTAATGATATCGCTAGTAAAAT-------------GTT-------------GTA---------------------------GAATCAGCTCTA---------------ATTAGTA-------------------TATTATTA-----TC--GTCTCTCTAATCGACAGTGAAATCG---GTGAACCACCACAGCCGCCAGTGAAATGTTCCAACTTCTTCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................A-------------GCAGACATCAAAATGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
droWil2
GTT-----TACTTTTAGATTTATCAACCA-------------GCCGATATCAAAATGGAAGTGTAAGTATGA------------------------------------------GACGGGAC-----------AGA---TAA--------------------------------------------------------------------------TGTTA----------ATG---TATG-----------------------------------------------------------------------------ATGA----------------------------------------------------------------------------------------------------GAT-------------CTAATTCAATTTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAGGGTCAAGACCAATAGTTAAA----------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................GATTTATCAACCA-------------GCCGATATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGGGTCAAGACCAATAGT....................2211.00100010
droVir3
TTC-----ATTTT-TAAATTAAAATATAT-------CTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTA------A-----CT--TTGTATTAAATTTGCAGCGAAGCAG---CAGATCCCGTAGAACCGCAAGCCCGCTGGAGCACCTTTTTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGCAG---CAGATCCCGTAGAACC..........................2411.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAG---CAGATCCCGTAGA.............................2011.001000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAG---CAGATCCCGTAGAAC...........................2211.001000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGATCCCGTAGAACCGCAAGCC...................2411.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGATCCCGTAGAACC..........................1811.001000000000000000000000000000000000000000000000000100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAGATCCCGTAGAACCGCAAGCC...................2611.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACCGCAAGCCCGCTGGAGCACCT......2611.001000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAG---CAGATCCCGTA...............................1811.001000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATCCCGTAGAACCGCA.......................1911.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCCCGTAGAACCGCAAGCCCGCT...............2611.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAGATCCCGTAGAACCGCAA......................2411.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAGAGAAGCGG---CCGAGCCTGTAGAACCGCATGCACGGTGGGGATCTTTTTTTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCACGGTGGGGATCTTT.....2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCGG---CCGAGCCTGTAGAACC..........................2411.001000010
droGri2
ATT-----TGCTTGCAGATTTATC-------------------CGGATTTTAAAATGGAACTGTAAGTTGGAACA---------------------------------------AATA-------------------------------------------------------------------------------------------------------------AC---------------------------T--TGATTTTCGATT------------------------------------------------------------TTATTA------------------------------------------------------------------------------------------------------------------------CTATTA-----------------------------------------------------------C-------------------------------------GTG-TA-GG-TAACTTAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAT----ATAAATA--------------------------AA---T-----------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:57 PM