ID:

dsi_1046

 Coordinate:

3l:11656562-11656711 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-15.7 -15.6 -15.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATAGAATTCCTTATTCATTATTTGTATGTATTCATTTTTGTATACATTTTGAGGTTATTTATGTTGGATACTTAAACAAATAAATCCTTAAAAACTTCTAATTACTTTTGCTTACTTACTATTCAAATGGGAAGTGCGTGCTTCTGTACAATTTATACGATTGTATTTTATTTCCTTTTCTTTAACTTTTTAACTTGCAGTGTTACTGATCGCGCTGATGCTGTCTACAGTGGCCCCGCACTTACCGATG
**************************************************((((..((((((.(((..........)))))))))))))....................((.((((..((((....))))..)))).))......((((((((.....))))))))..................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
.........................................................................................................................................................................................................GTTACTGATCGCGCTGATGCTGT.......................... 23 0 1 2.00 2 2 0 0 0 0 0 0
...........................................................................................................................................GCTTCTGTACAATTTATACGA.......................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................................GTTACTGATCGCGCTGATGC............................. 20 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................GTTACTGATCGCGCTGATGCT............................ 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................ACTGATCGCGCTGATGCTGT.......................... 20 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................TGTTACTGATCGCGCTGATGCT............................ 22 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................TGTTACTGATCGCGCTGATGCTGTC......................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GTTACTGATCGCGCTGATGCTGG.......................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TGTCTACAGTGGCTCCG............ 17 1 2 0.50 1 0 0 0 1 0 0 0
..........................................................................AACAAAGAAATCCTTAAAA............................................................................................................................................................. 19 1 2 0.50 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................GTCTCAAGTGGCTCCGCACT........ 20 3 5 0.20 1 0 0 0 0 0 1 0
..................TAGTTGTATGTAGTCCTTTTTG.................................................................................................................................................................................................................. 22 3 5 0.20 1 0 0 1 0 0 0 0
.......................................................................................................................TATTCAAATGGGAACT................................................................................................................... 16 1 6 0.17 1 0 0 0 0 1 0 0
......................................................................................................................................................................................................AGTGTTACTGATCGATGTGA................................ 20 3 6 0.17 1 0 0 0 0 1 0 0
..............................................................................................CTTCTAATTACGTTCGCT.......................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 1
..........................................................TGATGTTGGATAATTAAAAAA........................................................................................................................................................................... 21 3 20 0.10 2 0 0 2 0 0 0 0
.....................................................................................................................................................................................................TGCTGTTACTGATCGCGCTG................................. 20 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

TATCTTAAGGAATAAGTAATAAACATACATAAGTAAAAACATATGTAAAACTCCAATAAATACAACCTATGAATTTGTTTATTTAGGAATTTTTGAAGATTAATGAAAACGAATGAATGATAAGTTTACCCTTCACGCACGAAGACATGTTAAATATGCTAACATAAAATAAAGGAAAAGAAATTGAAAAATTGAACGTCACAATGACTAGCGCGACTACGACAGATGTCACCGGGGCGTGAATGGCTAC
**************************************************((((..((((((.(((..........)))))))))))))....................((.((((..((((....))))..)))).))......((((((((.....))))))))..................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
......................................................................................................................................................................................................................GACTACCACGGATGTC.................... 16 2 20 11.00 220 100 60 34 26 0 0
......................................................................................................................................................................................................................AACTACGACGGATGTC.................... 16 2 20 6.85 137 49 39 36 13 0 0
......................................................................................................................................................................................................................AACTACCACGGATGTCACCG................ 20 3 6 2.17 13 6 1 1 5 0 0
.......................................................................................................................................................................................................................ACTACCACAGATGTC.................... 15 1 10 1.30 13 6 1 2 4 0 0
......................................................................................................................................................................................................................AACTACCACGGATGTCACCGG............... 21 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................ACTACCACGGATGTCACCGAGGC............ 23 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................CAGGTACGAAGACATGTTAAGT............................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0
......................................................................................................................................................................................................................AACTACCACGGATGTCACCGGGGC............ 24 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................................................................................ACTACCACGGATGTCACC................. 18 2 5 0.60 3 2 0 0 1 0 0
.......................................................................................................................................................................................................................ACTACCACGGATGTCAGCG................ 19 3 13 0.38 5 2 3 0 0 0 0
.......................................................................................................................................................................................................................ACTACCACGGATGTCACCGC............... 20 3 9 0.22 2 1 0 0 1 0 0
.........................................................................................................................................................................................................................TACCACGGATGTCAGCGGG.............. 19 3 5 0.20 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................ACTACGACGGATGTC.................... 15 1 6 0.17 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................GGACAGATGTGTCCGGGGC............ 19 3 8 0.13 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:33 AM