ID:

dsi_10457

 Coordinate:

2l:15815947-15816132 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.2 -7.1 -7.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

TCAAAGAAAATTGATTGATTTTCTTTGTGATAGCAGAAAAATCCATAATTGTACTTAATTGAAAAAAAGAACTAATTTTACTTAAACGATACTTAATCTAAGTTTGTGTTTTGGTGTAAAACATTTAAGATACGATACGAAAAGAGTTAATTATATTTATATTTATTTTTTATACATAACTCTAGCCTAAACAAGATTCAATTGTAAGCCTCTAACACGCTGAATTTTTAATCTAGAAATCAAACTACTTCCGTTAAAAGAAACCAATCAAATCTTTGTGAAAACG
**************************************************************************************************************................................(((((((..((((...............))))..))))))).............****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M025
embryo
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR1275483
Male prepupae
........................................................................................................AGTGTTTGGGTGTAAAAC.................................................................................................................................................................... 18 2 10 7.20 72 43 0 1 0 25 0 0 1 0 0 0 1 0 1
.........................................................................................................GTGTTTGGGTGTAAAACC................................................................................................................................................................... 18 2 13 6.92 90 55 0 2 0 29 0 0 3 0 1 0 0 0 0
.........................................................................................................................................................................TTATACATAACTCTAGCCTAAACAAGA.......................................................................................... 27 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................ATACATAACTCTAGCCTAAACAAGATT........................................................................................ 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTGGTGTAAAACATTTAAGATACGA....................................................................................................................................................... 25 0 1 3.00 3 0 2 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAATTGTAAGCCTCTAACACGCTGAAT............................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TAATTGTACTTAATTGAAAAAAAAGA....................................................................................................................................................................................................................... 26 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TTTAAGATACGATACGAAAAGAGT........................................................................................................................................... 24 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TTTGGTGTAAAACATTTAAGATACGATA..................................................................................................................................................... 28 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATTTAAGATACGATACGAAAA............................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................TCCATAATTGTACTTAATTGAAAAAAAGA........................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TTTTTATACATAACTCTAGCCT.................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........TGATTGATTTTCTTTGTGATA.............................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................TTTAAGATACGATACGAAAAG.............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................TTTTGGTGTAAAACATTTAAGATACGATA..................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TATACATAACTCTAGCCTAAACAAGA.......................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................CTTTGTGATAGCAGAAAAATC................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TAAACGATACTTAATCTAAGTTTGTGT................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................AATTGTAAGCCTCTAACAC.................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TACATAACTCTAGCCTAAACAAGA.......................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TACTTAAACGATACTTAATCTAAGTT...................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................TAGAAATCAAACTACTTCCGT................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAATTGTAAGCCTCTAACACGCT................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TCTAAGTTTGTGTTTTGGTGTA........................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................TTTTTTATACATAACTCTAGCCTAAACA............................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................TTTGGTGTAAAACATTTAAGATACGA....................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................ATACATAACTCTAGCCTAAACAAGA.......................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAATTGTAAGCCTCTAACACGCTGAATT............................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................AACCAATCAAATCTTTGTGAAAAC. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCAATTGTAAGCCTCTAACACGCTG................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCAATTGTAAGCCTCTAACACGCTGAA.............................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAATTGTAAGCCTCTAACA..................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................TTAAGATACGATACGAAAAGAGTT.......................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGGTGTAAAACATTTAAGATACGA....................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TCAATTGTAAGCCTCTAACACGCTGAAT............................................................. 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................TTTGTGTTTTGGTGTAAAACATTTAAGA............................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCAATTGTAAGCCTCTAACAC.................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTGGTGTAAAACATTTAAGATACGATACGA.................................................................................................................................................. 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CTCTAGCCTAAACAAGA.......................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CTCTAACACGCTGAATTTTTAATCTAGA................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............ATTGATTTTCTTTGTGATAGCAGAA........................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTTACTTAAACGATACTTAAACTA.......................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................GTTTGTGTTTTGGTGTAAAAC.................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................CATTTAAGATACGATACGAAAAGAGT........................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........TTGATTGATTTTCTTTGTGATAGCA........................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AATCTAAGTTTGTGTTTTGGTG.......................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........TTGATTGATTTTCTTTGTGATAGCAGA......................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................AGATTCAATTGTAAGCCTCTAACACGCT................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TATACATAACTCTAGCCTAAACAAGATT........................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAAGATACGATACGAAAAGAGTTAA........................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TAACACGCTGAATTTTTAATCTAGA................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATTGTAAGCCTCTAACACGCTGA............................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AAGATTCAATTGTAAGCCTCT......................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TACATAACTCTAGCCTAAACAAGATT........................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCAATTGTAAGCCTCTAACACGCTGAAT............................................................. 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................TCAATTGTAAGCCTCTAACACGCTGAA.............................................................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................TGTACTTAATTGAAAAAAA.......................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGTGTTTTGGTGTAAAAC.................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TATACATAACTCTAGCCTAAACAAGAT......................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................AAAACATTTAAGATACGATAC.................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................GTAAAACATTTAAGATACGATACGAAA................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TATTTTTTATACATAACTCTAGCCTA................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................GAGTGTTTTGGTGTAAAAC.................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
TCAAAGACAGTTGATTGATT.......................................................................................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................AGTGTTTTGGTGTAAAACCC.................................................................................................................................................................. 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GTTCCGATACGAAAAGAG............................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................TTCTTTTTGATAGCAGGA........................................................................................................................................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................TAGTGTTTGGGTGTAAAACC................................................................................................................................................................... 20 3 10 0.20 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0
TCAAAGACAGCTGATTGATTT......................................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................TTAAAGATTTAAGTTACGATA..................................................................................................................................................... 21 3 13 0.15 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0
.........................................................................................TAGTTAATCTAAGTTTGGGA................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................GTGTTTGGGTGTAAAA..................................................................................................................................................................... 16 1 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......AAAATTGATCTATTTTCTTTGTT................................................................................................................................................................................................................................................................. 23 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GAGTGTTTTGGTGTAAAA..................................................................................................................................................................... 18 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GTGAGTGTTTGGGTGTAAAAC.................................................................................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GTCTTCATCTAAGTTTGTGT................................................................................................................................................................................. 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................GTGTTTGGGTGTAAAACT................................................................................................................................................................... 18 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................AGAAACCAATCTAAGCT........... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AGTTTCTTTTAACTAACTAAAAGAAACACTATCGTCTTTTTAGGTATTAACATGAATTAACTTTTTTTCTTGATTAAAATGAATTTGCTATGAATTAGATTCAAACACAAAACCACATTTTGTAAATTCTATGCTATGCTTTTCTCAATTAATATAAATATAAATAAAAAATATGTATTGAGATCGGATTTGTTCTAAGTTAACATTCGGAGATTGTGCGACTTAAAAATTAGATCTTTAGTTTGATGAAGGCAATTTTCTTTGGTTAGTTTAGAAACACTTTTGC
******************************************************************************************................................(((((((..((((...............))))..))))))).............************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 GSM343915
embryo
...................................................ATGGATTCCCTTTTTTTCTTGAT.................................................................................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................CTTTAGTTTGATGAAGGCAAT.............................. 21 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................................................................AAAAATATGCAGTGAGAGCGGAT................................................................................................. 23 3 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................................................................................................AAAATCTGGATTGAGATCGGAG................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................AAAATATTTATTGAGTTAGGAT................................................................................................. 22 3 5 0.40 2 2 0 0 0 0 0 0
...................................................................................................................................................................................GGGATCGGATTTGTT............................................................................................ 15 1 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................TCTAAGTTAACATTGGC............................................................................ 17 2 20 0.10 2 0 0 0 0 2 0 0
.....................................................................................................................................................................................................................TTGTGCGACTTATGAAGTA...................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0
................................CGTCTTCTTAGGTATCCAC........................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0
................................................................TTTTTTTGATTAGAATGAA........................................................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 1
...............................TCGTCTTTCAAGGTGTTAAC........................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:15815897-15816182 - dsi_10457 TCAAAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------AA-----AATCCATAA-TTGTACTTAATT------GA-------AAAA----AAG----AA-C-TAA-TT-TTACTTA-------------------------------------AACGATA--CTTAATCTAAGTTTGTG--------TTTTGGTGTAAAACATTTAAG-ATAC---------GATAC------------GAAA--AGAGTTAATTA----------------------TATTTATATTTATTTTTTATACATAA--------CTCTA-G-CCTA----------AAC-AAGA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAC-TACTTCCGTTAAA-AGAAACCAATCAAAT-C-------------------TTTGT------------------GAAAACG
droSec2 scaffold_5:4970842-4971127 - TCAAAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------AA-----AATCCATAA-TTGTACTTAATT------GA-------AAAA----AAG----AA-C-TAA-TT-TTACTTA-------------------------------------AACGATA--CTTAAACTAAGTTTGTG--------TTTTGGTTTAAAACATTTAAG-ATAC---------GATAC------------GAAA--AGAGTTAATTA----------------------TATTTATATTTATTTTTTATACATAA--------CTCTA-G-CCTA----------AAC-AAGA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAC-TACTTCCGTTAAA-AGAAACCAATCAAAT-C-------------------TTTGT------------------GAAAACG
dm3 chr2L:16249042-16249337 - TCAAAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------AA----AAATCCATAA-TTGTACTTAATT------GA-------AAAG-AAAAAG----AA-C-TAA-TT-TTACTTA-------------------------------------AACGATA--CTTAAACTAAGTTTGTG--------TTTTGGTGTAAAACATTTAAG-ATAC---------GATAC------------GAAA--AGAGTTAATTATAT----------------TTATATTTATATTTATTTTTTATACATAA--------CTCTA-G-CCTA----------AAC-AAGA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAC-TACTTCCGTTAAA-AGAAACCAATCAAAT-C-------------------TTTGT------------------GAAAACG
droEre2 scaffold_4929:7945646-7945929 - TCAAAGAAA--GT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------AA-----AATCCATAA-TTGTACTTAATT------GA-------AAA-----CAG----AA-C-TAA-TT-TTACTTA-------------------------------------AACGATA--CTTAATCTAGGTTTGTG--------TTTTGGTATAAAACATTTAA-TATAC---------GATAC------------GAAAA-AGAGTTAATTA----------------------TATTTATATTTATTTTTTATACATAA--------CTCTA-A-CTTA----------AAC-AAGA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAA-TACTTCCGTTTAA---AAACCAATCAAAT-C-------------------TTTGT------------------GAAACCG
droYak3 2L:19082085-19082364 + TCAAAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------AA-----AATCCATAA-TTGTACTTAATT------GA-------AAAA----AA-----AA-C-TAATTT-TTACGTT-------------------------------------AACGATA--CTTAATCTAGGTTTGTG--------TTTTGGTGTAAAACATTTAAG-ATAC---------GATAC------------AA----AGAGTTAATTA----------------------TAATTATATTTATTTTTTATACATAA--------CACTA-A-CTTA----------AAC-AAGA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT---ATCT-A-G-----AAATCAATC-TACTTCCGTTAAA---AAACCAATCAAAT-C-------------------TTTGT------------------GAA-ACG
droEug1 scf7180000404992:181229-181512 + TCACAGAAA--AT-TGGT-T-GACTTTCTT-T-----GTGATAGA---------------AG-A--------------AA-----AAACCAAAA-TTGTACTTAATT------AA-------AAAAGAAAAA----CAA-T-TAATTT-TTACTTA-------------------------------------AATGATA--A----TCTAGGTTTGTG--------TTTTGGTGTAAAACATTTAAGTGTAC---------GATAC------------GAAAACAGAGTTAATTA----------------------TA------TTTATTTTTTATACATAA--------CTCAA-A-TCTT----------AAC-AAAA------TTCAATTTTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAC-TACTTCCGTTAAA-CAAAACCAATCAAAT-C-------------------TTTGT------------------GAAAACC
droBia1 scf7180000302408:1060603-1060889 + TCACTAAAA--AT-TGCT-T-GATTTTCTT-T-----GTGATAGA---------------AG-A--------------AA-----AATCCAAAA-TTGTACTTAATT------AA-------AGGAG---AA----AAA-C-TAATTT-CTACTTA-------------------------------------AACGATA--A----TTTAGGTTTGTG--------TCTTGGTGTAAATCGTTTA-GCGTAC---------GACAC------------GAAATCAGAGTTAATTA----------------------TATTTATATTTATTTTTTATACATAA--------CACAG-A-CATA----------AAC-TTAA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCATAC-AACTTCCGTTAAAGAAAAACCAATCAAAT-C-------------------TTTGT------------------AAAAACC
droTak1 scf7180000415912:129332-129619 + TCACAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGA---------------AG-A--------------AA-----AATCCAAAA-TTGTACTTATTT------AA-------ACAA----AAGAAATAA-C-AAGTTT-TTACTTA-------------------------------------AACGATA--A----TTTAGGTTTGTG--------TTTCGGTGTAAAACATTTAAGCGTAC---------GATAC------------GAAATCAGAGTTAATTA----------------------TATTTATATTTATTTTTTATACATAA--------CTCAA-C-CCTA----------AAC-GAAA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAC-TACTTCCGTTAAC---AAACCAATCAAAT-C-------------------TTTGT------------------GAAAACC
droEle1 scf7180000490579:1126370-1126659 + TCACAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGA---------------AG-A--------------AA-----AATCCAAAA-TTGTACTTAATT------AA-------AAGA----AA----TACCT-TCATTT-TTACTTA-------------------------------------AAGATTA--G----ATTAGGTTTGTG--------TTTTGGTGTAAAATATTTAGACGTAC---------GATAC------------GAAAACAGAGTTAATTA----------------------TACTTATATTTATTTTTTATACATAA--------CTCAAAA-CCTA----------AAC-AAAA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAC-TACTTCCGTTAAAAAAAAACCAATCAAAT-C--T----------------TTTGT------------------GAAAACC
droRho1 scf7180000779547:10122-10406 - TCACAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAAA---------------AG-A--------------AA-----AATCCAAAA-TTGTACTTAATT------AA-------AAAG----AA----TACCT-TCACTT-TTACTTA-------------------------------------TAAATTA--C----TTTAGGTTTGTG--------TTTTGGTGTAAAATATTTAAGCGTAC---------GATAC------------GAAAACAGAGTTAATTA----------------------TACTTATATTTATTTTTTATACATAA--------CTCAA-A-CCTA----------AAC-GAAA------TTCAATTTTAAGCCTC---TA-ACACGCTGAATTTTG--TATCT-A-G-----AAATCAAAC-TACTTCCGTTTCA---AAACCAATCAAAT-C-------------------TTTGT------------------GAAAACC
droFic1 scf7180000454078:183338-183622 - TCACAGAAA--AT-TCAT-T-GATTTTCTT-T-----GTGATAGA---------------AG-A--------------AA----AAATCCACAA-TTGTACTTAAAT------TA------AAA-A----AT----TAA-CATAA-TT-TTACTTA-------------------------------------AATAATA--C----ATTAGGTTTGTG--------TTTCGGTGTAAAACATTTAAGCATAC---------GATAC------------AAAA-CGGAGTTAATTA----------------------TATTTATATTTATTTTTTATACATAA--------CTTTA-A-CTTA----------AAC-AGAA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAT-TACTTCCGCTAAA-A-AAACCAATCAAAT-C-------------------TTTGT------------------GAAAACC
droKik1 scf7180000302468:568403-568698 - TCAAAGGAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGA---------------AG-A--------------AA-----AATCCAAAA-TTGTACTTAAATA-TTT-AA-------AAAG----AA----TAC-C-TAATTT-CGTCATA-------------------------------------AGGAATAGAA----TTTAGTTCTGTGTGTGTGT-ATTTGATGTGAACAATTTAAGCGTAC---------TAATC------------TAAAACAGAGTTAATTA----------------------TAATTATATTTATTTTGTATACATTA--------ATCGG-A-ACTA----------AACGAAAA------ACCAATTGTAAGATTC---TA-ACACGCTGAATTTTTA-AATCT-A-G-----AAATCGAAC-TACTTCCGTAA-----AGGCTAAACAAAA-T-------------------TTTGT------------------GAAAAC-
droAna3 scaffold_12916:139899-140145 - TCAAAGAAA--AC-AAAT-C-AATTTTCTT-T-----GTGATAGA---------------AG-A--------------A---------CCCCAA-TTGTACTTAATTA-TT-A--------AA--------GG-----A---TAA-TT-TTACTTA-------------------------------------A--GATT--C----TATAGATTTCTG--------TCTTGATGTAAATCGCCTAAGCCTAC---------GATAA------------GAGAG-GGACTTCATTA----------------------TATTT-----------TTGTAA-----------------------G----------AGC-AAAAT-----TTTAAGTGTGAGCATC---CA-A-TCGCTGAATTTTA--C-ATT-A-G-----AAATCGAAC-TACTTCCGTAAAG-AGAAAACAATTAACT-TATT----------------TTAGT------------------G------
droBip1 scf7180000396554:2140727-2141005 + TCAAAGAAA--AC-AAAT-C-AATTTTCTT-T-----GTGATAGA---------------AG-A--------------AA----AAATCCAAAA-TTGTACTTAATTAATT-A--------AA--------GG-----A---TAATTTTTGACTTA-------------------------------------AGTAACT--C----TATAGAATTCTG--------TCTTGATGTAAATCCATTAAGTTAAC---------GATAA------------GAGAG-CGACTTTATTA----------------------TATT-----------TTTGTACG----------------------A----------AACGAAAAT-----TTTAATTGTGAGCCACCACGA-AATCGCTGAATTTTTA-AAATT-A-G-----AAATCAAAC-TACTTCCTAAA-----AAACTAAC----T-TATTTTAGTGTTAAACAAGATTTGT------------------GAAGGAC
dp5 4_group1:3578116-3578412 + TCACGGAAA--TTTTCATAC-CATTTTCTT-T-----GTGATAGA---------------AG-A--------------AAAAAAAAATCTACAATTTGTACTTAAAT------TAATTTTAAAAAAGA--AAG-ATCACCTATAATTT-GTACTTGGAAA----------------------------------ATTTTA--C----TCTAGTTTTGTGTG----TTTTTTGGTGTAGAACGAT---------------------ACAAAAAAGGAAGAGAA--GAGAGCTAATTA----------------------TATTTAAATTTATTTTTTATACA--------------------CTA----------AACGAAAC------ATCAATTGTA-GCATC---TAAATACGCTGAATTTTTA-AAACT-A-G-----GAATCAAGAAAACTTCCCCTCTA-AGA-AC---TCAAA-----------------------TTGT------------------AAAA--G
droPer2 scaffold_5:1635109-1635402 - TCACGGAAA--TTTTCATAC-CATTTTCTT-T-----GTGATAGA---------------AG-A--------------AAAAAAAAATCTACAATTCGTACTTAAAT------TAATTTTAAA-AA----AAG-ATCACCTATAATTT-GTACTTGGAAA----------------------------------ATTTTA--C----TCTAGTTTTGTGTG----TTTTTTGGTGTAGAACGAT---------------------ACAAAAAAGGAAGAGAA--GAGAGCTAATTA----------------------TATTTAAATTTATTTTTTATACA--------------------CTA----------AACGAAAC------ATCAATTGTA-GCATC---TAAATACGCTGAATTTTTA-AAACT-A-G-----GAATCAAGAAAACTTCCCCTCTA-AGA-AC---TCAAA-----------------------TTGT------------------AAAA--G
droWil2 scf2_1100000004521:5142974-5143333 - TCAAGGATA--AT-ACAT-T-GAGTTTCCT-T-----GTGATAAA-----GAGTTTAAGACGCA---------------A-----AAT---TGT-TTGTACTTAATT------T-------------------------------------ACTTA---AGTTTTACTTAATTAATTACACATTATTATCAAATTCGTTT--CTAAGACCAAACTTCTA--------TCCCCATCCACACACACAAAAACACA---------CACAC------------GAAAA-TCAATTAATTATATACACACACACATATATATATATAAATATTTATTTTTC-TAC-CAA--------CTAAA-AAC-AAAAAAAAAGAAAGAAAAAACTAAAAGTCAA-AGTGAACGTA----G-GAACGCTGAATTTTTGCAAATT-A-G-----AAATCAAGCAAACTTCCCTTCA----------TTTAAATTTAATACAATTTAAGTTTAGATTAGT------------------GAGGACA
droVir3 scaffold_12723:2848257-2848534 + AAAA--------T-AG-C-C-G----TCTTTTGGGTTGAGACA-CAGAA-AAATTGA---AG-----------------A-----ACTCCAAAA-TTGTACTTAATTA-TT-G--------AG--------C-----TA-T-TTATTT-ATACTTA-------------------------------------AACAATT--C----ACTTGTTCTGTGTG-------CTTAGTGTAGTATTTGAAAGCCTGC---------TA---------------------AAATCTTATTA----------------------TATTTATATATATTTTTTTTACAACAAGTTTTTAAACAA-G-CCTA---------AAAC-ATCA------TCTACATCTAAACCAC---T----TCGCTGAATTTTC--AA-CA-ACAATATTAAATCGTGT-AACTTCCCGAA-----AGTCAAATCAAAA-A-------------------ATTG--------------------------
droMoj3 scaffold_6500:16115632-16115903 + GCACAGCAAAAAA-TACT-TATATATTTTT-T-----GTGATAAC----CGTTTTGA---AG-----------------A-----TATCCAAAATTTGTACTTAATTA-TT-G--------AA-------------TTA-T-TCATTT-ATACTTA-------------------------------------AACAATT--A----TTTGGTTTGGTG--------TATAAATCTAAAGCCT--------GCTAAAGAAAAAATAA------GAAAA-AAA---AAAGAAACT---------------------TTATATTTATATATATTTTT---ACA----------------------A----------AAC-AAAT------TTC-----TAAA--------A-TTACGCTGAATTTTT--A-TCTATCTAAATAAAATCGCGT-AACTTCCCAA------AGTCAAATCAAA--C--------------------AAGG------------------AAAAACA
droGri2 scaffold_15126:641961-642291 - ACGCAGAAA--AT-TCGT-A-AATTTC--G-T-----GTGATAAG----AATTAGG---AGGGAAAAATACCCAACAACA-----ACAACAAAA-TTGTACTTAATTA-TT-G--------AA-------AT----TTA-T-TTGTTT-ATACTTAAATA----------------------------------GCATT---G----ATTAGTTCTGTGTGAGTGTGTTTTGGTGTAGACATTTTAAGCCTAC---------AAAA--------------------CATCTAATTA----------------------TATTTATATATATTTTTTA--CATTT--------TTTAAAAAC-AA---------AAGAGAAAAT-----TCTACATCTAAACCAC---AA---ACGCTGAATTTTT--CGACT-A-AAAATAAAATCGAGT-AACTTCCCAAA-----AGTCAAATCAAAT-CAAT----------------TTTGTAAAAAACAAAAAACAAAAGAAAACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCAAAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------AA-----AATCCATAA-TTGTACTTAATT------GA-------AAAA----AAG----AA-C-TAA-TT-TTACTTA-------------------------------------AACGATA--CTTAATCTAAGTTTGTG--------TTTTGGTGTAAAACATTTAAG-ATAC---------GATAC------------GAAA--AGAGTTAATTA----------------------TATTTATATTTATTTTTTATACATAA--------CTCTA-G-CCTA----------AAC-AAGA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAC-TACTTCCGTTAAA-AGAAACCAATCAAAT-C-------------------TTTGT------------------GAAAACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................TTATACATAA--------CTCTA-G-CCTA----------AAC-AAGA------...............................................................................................................................................2713.00300010002000000000
................................................................................................................................................................................................................................................................................................................................................ATACATAA--------CTCTA-G-CCTA----------AAC-AAGA------TT.............................................................................................................................................2713.00303000000000000000
.....................................................................................................................................................................................................................................TTGGTGTAAAACATTTAAG-ATAC---------GA...........................................................................................................................................................................................................................................................................2513.00300000012000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CAATTGTAAGCCTC---TA-ACACGCTGAAT..............................................................................................................2712.00202000000000000000
..................................................................................................................................................................................................................................................TTTAAG-ATAC---------GATAC------------GAAA--AGAGT.................................................................................................................................................................................................................................................2412.00200000000020000000
....................................................................................................................................................................................................................................TTTGGTGTAAAACATTTAAG-ATAC---------GATA.........................................................................................................................................................................................................................................................................2812.00200000000020000000
.................................................................................................................................................................................................................................................ATTTAAG-ATAC---------GATAC------------GAAA--A.....................................................................................................................................................................................................................................................2111.00100010000000000000
.......................................................................................TCCATAA-TTGTACTTAATT------GA-------AAAA----AAG----A.........................................................................................................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................TTTTTATACATAA--------CTCTA-G-CCT........................................................................................................................................................................2211.00100100000000000000
..............TGAT-T-GATTTTCTT-T-----GTGATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..................................................................................................................................................................................................................................................TTTAAG-ATAC---------GATAC------------GAAA--AG....................................................................................................................................................................................................................................................2111.00100100000000000000
...................................................................................................................................................................................................................................TTTTGGTGTAAAACATTTAAG-ATAC---------GATA.........................................................................................................................................................................................................................................................................2911.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................TATACATAA--------CTCTA-G-CCTA----------AAC-AAGA------...............................................................................................................................................2611.00100000001000000000
...........................CTT-T-----GTGATAGC---------------AG-A--------------AA-----AATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..........................................................................................................................................................TA-------------------------------------AACGATA--CTTAATCTAAGTTTGTG--------T...............................................................................................................................................................................................................................................................................................................2711.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AATTGTAAGCCTC---TA-ACAC.....................................................................................................................1911.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................TACATAA--------CTCTA-G-CCTA----------AAC-AAGA------...............................................................................................................................................2411.00100000001000000000
......................................................................................................................................................TACTTA-------------------------------------AACGATA--CTTAATCTAAGTT............................................................................................................................................................................................................................................................................................................................2611.00100001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................T-A-G-----AAATCAAAC-TACTTCCGT.......................................................................2111.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................CAATTGTAAGCCTC---TA-ACACGCT..................................................................................................................2311.00101000000000000000
...............................................................................................................................................................................................................TCTAAGTTTGTG--------TTTTGGTGTA......................................................................................................................................................................................................................................................................................................2211.00100000000000100000
..........................................................................................................................................................................................................................................................................................................................................TTTTTTATACATAA--------CTCTA-G-CCTA----------AAC-A........................................................................................................................................................2811.00100000000000010000
....................................................................................................................................................................................................................................TTTGGTGTAAAACATTTAAG-ATAC---------GA...........................................................................................................................................................................................................................................................................2611.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................ATACATAA--------CTCTA-G-CCTA----------AAC-AAGA------...............................................................................................................................................2511.00100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CAATTGTAAGCCTC---TA-ACACGCTGAATT.............................................................................................................2811.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAATCAAAT-C-------------------TTTGT------------------GAAAAC.2411.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTCAATTGTAAGCCTC---TA-ACACGCTG.................................................................................................................2611.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTCAATTGTAAGCCTC---TA-ACACGCTGAA...............................................................................................................2811.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................CAATTGTAAGCCTC---TA-ACA......................................................................................................................1911.00100000000000100000
...................................................................................................................................................................................................................................................TTAAG-ATAC---------GATAC------------GAAA--AGAGTT................................................................................................................................................................................................................................................2411.00100000001000000000
......................................................................................................................................................................................................................................TGGTGTAAAACATTTAAG-ATAC---------GA...........................................................................................................................................................................................................................................................................2411.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCAATTGTAAGCCTC---TA-ACACGCTGAAT..............................................................................................................2811.00100000000000001000
.....................................................................................................................................................................................................................TTTGTG--------TTTTGGTGTAAAACATTTAAG-A.........................................................................................................................................................................................................................................................................................2811.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTCAATTGTAAGCCTC---TA-ACAC.....................................................................................................................2211.00100000001000000000
.....................................................................................................................................................................................................................................TTGGTGTAAAACATTTAAG-ATAC---------GATAC------------GA..........................................................................................................................................................................................................................................................3011.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................CTCTA-G-CCTA----------AAC-AAGA------...............................................................................................................................................1711.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----A.........................................................................................2811.00100000000010000000
................AT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
....................................................................................................................................................................................................................GTTTGTG--------TTTTGGTGTAAAAC..................................................................................................................................................................................................................................................................................................2111.00110000000000000000
................................................................................................................................................................................................................................................CATTTAAG-ATAC---------GATAC------------GAAA--AGAGT.................................................................................................................................................................................................................................................2611.00100000010000000000
............T-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
.............................................................................................................................................................................................................AATCTAAGTTTGTG--------TTTTGGTG........................................................................................................................................................................................................................................................................................................2211.00100010000000000000
............T-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................AGA------TTCAATTGTAAGCCTC---TA-ACACGCT..................................................................................................................2811.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................TATACATAA--------CTCTA-G-CCTA----------AAC-AAGA------TT.............................................................................................................................................2811.00100000001000000000
....................................................................................................................................................................................................................................................TAAG-ATAC---------GATAC------------GAAA--AGAGTTAA..............................................................................................................................................................................................................................................2511.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TA-ACACGCTGAATTTTT--AATCT-A-G-----A.........................................................................................2511.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAGCCTC---TA-ACACGCTGA................................................................................................................2311.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................AAGA------TTCAATTGTAAGCCTC---T...........................................................................................................................2111.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................TACATAA--------CTCTA-G-CCTA----------AAC-AAGA------TT.............................................................................................................................................2611.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTCAATTGTAAGCCTC---TA-ACACGCTGAAT..............................................................................................................2911.00100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCAATTGTAAGCCTC---TA-ACACGCTGAA...............................................................................................................2711.00100000000000001000
................................................................................................TGTACTTAATT------GA-------AAAA----AA...............................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000001000000000
.......................................................................................................................................................................................................................TGTG--------TTTTGGTGTAAAAC..................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................TATACATAA--------CTCTA-G-CCTA----------AAC-AAGA------T..............................................................................................................................................2711.00100000000000001000
............................................................................................................................................................................................................................................AAAACATTTAAG-ATAC---------GATAC------------............................................................................................................................................................................................................................................................2111.00100000000000100000
..........................................................................................................................................................................................................................................GTAAAACATTTAAG-ATAC---------GATAC------------GAAA--......................................................................................................................................................................................................................................................2711.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................TATTTTTTATACATAA--------CTCTA-G-CCTA----------.............................................................................................................................................................2611.00100000000000010000
droSec2
TCAAAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------AA-----AATCCATAA-TTGTACTTAATT------GA-------AAAA----AAG----AA-C-TAA-TT-TTACTTA-------------------------------------AACGATA--CTTAAACTAAGTTTGTG--------TTTTGGTTTAAAACATTTAAG-ATAC---------GATAC------------GAAA--AGAGTTAATTA----------------------TATTTATATTTATTTTTTATACATAA--------CTCTA-G-CCTA----------AAC-AAGA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAC-TACTTCCGTTAAA-AGAAACCAATCAAAT-C-------------------TTTGT------------------GAAAACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................AAACTAAGTTTGTG--------TTTTGGT.........................................................................................................................................................................................................................................................................................................2113.0030030
..............TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020110
............................................................................................................................................................................................................TAAACTAAGTTTGTG--------TTTTGGT.........................................................................................................................................................................................................................................................................................................2212.0020110
................................................................................................................................................................................................................CTAAGTTTGTG--------TTTTGGT.........................................................................................................................................................................................................................................................................................................1812.0020020
.......................................................................................................................................................................................................................................................G-ATAC---------GATAC------------GAAA--AGAGTTAATTA----------------------T....................................................................................................................................................................................................................2612.0020200
.................................................................................................................................................................................................................................................ATTTAAG-ATAC---------GATAC------------GAAA--AGAGTT................................................................................................................................................................................................................................................2611.0010100
....................................................................................................................................................................................................................................TTTGGTTTAAAACATTTAAG-ATAC---------GAT..........................................................................................................................................................................................................................................................................2711.0010100
.................................................................................................................................................................................................................................................ATTTAAG-ATAC---------GATAC------------GAAA--AGAGT.................................................................................................................................................................................................................................................2511.0010100
..........................................................................................................................................................................................................................................................................................................................................................................TA----------AAC-AAGA------TTCAATTGTAAGCC.................................................................................................................................2311.0011000
..............................................................................................................................................................................................................................................AACATTTAAG-ATAC---------GATAC------------GAAA--AGAGTT................................................................................................................................................................................................................................................2911.0010100
...............GAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
............T-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
..............................................................................................................................................................................................................AACTAAGTTTGTG--------TTTTGG..........................................................................................................................................................................................................................................................................................................1911.0010010
.................................................................................................GTACTTAATT------GA-------AAAA----AAG----AA-C-TAA-TT-..............................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
........................TTTCTT-T-----GTGATAGC---------------AG-A--------------AA-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..........................................................................................................................................................................................................................................TTAAAACATTTAAG-ATAC---------GATAC------------G...........................................................................................................................................................................................................................................................2411.0010010
......................................................................................................................................................................................................................................................................GATAC------------GAAA--AGAGTTAATTA----------------------T....................................................................................................................................................................................................................2111.0010010
.......................................................................................................................................................................................................................................................G-ATAC---------GATAC------------GAAA--AGAGT.................................................................................................................................................................................................................................................1911.0011000
dm3
TCAAAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------AA----AAATCCATAA-TTGTACTTAATT------GA-------AAAG-AAAAAG----AA-C-TAA-TT-TTACTTA-------------------------------------AACGATA--CTTAAACTAAGTTTGTG--------TTTTGGTGTAAAACATTTAAG-ATAC---------GATAC------------GAAA--AGAGTTAATTATAT----------------TTATATTTATATTTATTTTTTATACATAA--------CTCTA-G-CCTA----------AAC-AAGA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAC-TACTTCCGTTAAA-AGAAACCAATCAAAT-C-------------------TTTGT------------------GAAAACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
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....................................................................................................................................................................................................GATA--CTTAAACTAAGTTTGT.........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TT------GA-------AAAG-AAAAAG----AA-C-TAA-TT-TTACT.........................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AAATCCATAA-TTGTACTTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AA--AT-TGAT-T-GATTTTCTT-T-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AGA------TTCAATTGTAAGCCTC---TA-AC.......................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAAT-C-------------------TTTGT------------------GAAAAC.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCAATTGTAAGCCTC---TA-CA.......................................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AC---------GATAC------------GAAA--AGAGTTAATTATAT----------------T.......................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................ATAC------------GAAA--AGAGTTAATTATAT----------------T.......................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CAATTGTAAGCCTC---TA-ACA......................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................AAGA------TTCAATTGTAAGCCT................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................T-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------AA----AA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................GATA--CTTAAACTAAGTTTGTG--------TT..............................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CACGCTGAATTTTT--AATCT-A-G-----AAATC.....................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................G--------TTTTGGTGTAAAACATTTAAG-AT........................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AT-C--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................ATAA-TTGTACTTAATT------GA-------AAAG-AAAA................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................G-AAAAAG----AA-C-TAA-TT-TTACTTA-------------------------------------A.................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TTAAACTAAGTTTGTG--------TTTTGGTG........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAC-TACTTCCGTTAA....................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TATTTTTTATACATAA--------CTCTA-G-CCTA----------AAC-.........................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TACATAA--------CTCTA-G-CCTA----------AAC-AAG......................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................A-G-CCTA----------AAC-AAGA------TTCAATTGTAAGCC.................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TTTTATACATAA--------CTCTA-G-CCTA----------.............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACGCTGAATTTTT--AATCT-A-G-----AAAT......................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TA-------------------------------------AACGATA--CTTAAACTAA...............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGTAAGCCTC---TA-ACACGCTGAA...............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................ACTAAGTTTGTG--------TTTTGGT.........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................A-C-TAA-TT-TTACTTA-------------------------------------AACGATA--.........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TAC------------GAAA--AGAGTTAATTATAT----------------TT......................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CTA-G-CCTA----------AAC-AAGA------TTCAATT........................................................................................................................................2211.0010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................GTTTGTG--------TTTTGGTGTAAAACATTTAAG-AA........................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................T-----GTGATAGC---------------AG-A--------------AA----AAATCCATAA-....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................AGTTTGTG--------TTTTGGTGTA......................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................ACATAA--------CTCTA-G-CCTA----------AAC-A........................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CTAAGTTTGTG--------TTTTGGTGTA......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCCTC---TA-ACACGCTGAA...............................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CTT-T-----GTGATAGC---------------AG-A--------------AA----AAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................A-G-CCTA----------AAC-AAGA------TTCAATTGT......................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GATTTTCTT-T-----GTGATAGC---------------AG-A--------------AA----A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CACGCTGAATTTTT--AATCT-A-G-----AAATCAAAC-................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................T-T-----GTGATAGC---------------AG-A--------------AA----AAATCCATAA-TTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TA----------AAC-AAGA------TTCAATTGTAAGCCTC---............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................A-ACACGCTGAATTTTT--AATC....................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TAC------------GAAA--AGAGTTAATTAT..........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AGA------TTCAATTGTAAGCCTC---T...........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................AAG----AA-C-TAA-TT-TTACTTA-------------------------------------AACG..............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAC-TACTTCCGTTAAA-..................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AA--------CTCTA-G-CCTA----------AAC-AAGA------TT.............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............T-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCT-A-G-----AAATCAAAC-TACTTCC.........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TATTTTTTATACATAA--------CTCTA-G-CCTA----------.............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AT-TGAT-T-GATTTTCTT-T-----GTGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................TTTGGTGTAAAACATTTAAG-ATAC---------GA...........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TGAT-T-GATTTTCTT-T-----GTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AG-ATAC---------GATAC------------GAAA--AGAGT.................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................T-----GTGATAGC---------------AG-A--------------AA----AAATCCATAA-TTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCAAAGAAA--GT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------AA-----AATCCATAA-TTGTACTTAATT------GA-------AAA-----CAG----AA-C-TAA-TT-TTACTTA-------------------------------------AACGATA--CTTAATCTAGGTTTGTG--------TTTTGGTATAAAACATTTAA-TATAC---------GATAC------------GAAAA-AGAGTTAATTA----------------------TATTTATATTTATTTTTTATACATAA--------CTCTA-A-CTTA----------AAC-AAGA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAA-TACTTCCGTTTAA---AAACCAATCAAAT-C-------------------TTTGT------------------GAAACCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................ATCTAGGTTTGTG--------TTTTGGT.........................................................................................................................................................................................................................................................................................................2013.0030000210
...........GT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000030
....................................................................................................................................................................................................GATA--CTTAATCTAGGTTTGTG--------T...............................................................................................................................................................................................................................................................................................................2213.0031000200
..................................................................................................................................................................................................ACGATA--CTTAATCTAGGTTTGTG--------TT..............................................................................................................................................................................................................................................................................................................2512.0020000200
..............................................................................................................................................................................................................................................AACATTTAA-TATAC---------GATAC------------GAAAA-AGA...................................................................................................................................................................................................................................................2712.0020000110
.....................................................................................................................................................................................................................................................AA-TATAC---------GATAC------------GAAAA-AGAGT.................................................................................................................................................................................................................................................2212.0020000200
......................................................................................................................................................................................................................................................................................................................................................AA--------CTCTA-A-CTTA----------AAC-AAGA------TTCAATTGT......................................................................................................................................2811.0010000100
.....................................................................................................................................................................................................................................................AA-TATAC---------GATAC------------GAAAA-AGA...................................................................................................................................................................................................................................................2011.0010000100
................................................................................................................................................................................................................................................................................................................................................ATACATAA--------CTCTA-A-CTTA----------AAC-AAGA------TTC............................................................................................................................................2811.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--AATCT-A-G-----AAATCAAAA-TACTTCC.........................................................................2611.0010100000
...........................................................................................................................................................A-------------------------------------AACGATA--CTTAATCTAGGTTTG..........................................................................................................................................................................................................................................................................................................................2311.0011000000
.........................................................................................................................................................................................................................................................ATAC---------GATAC------------GAAAA-AGAGTTAATTA----------------------T....................................................................................................................................................................................................................2611.0010100000
.........................TTCTT-T-----GTGATAGC---------------AG-A--------------AA-----A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
.........................................................................................................................................................................................................................................................ATAC---------GATAC------------GAAAA-AGAGTTAATTA----------------------TATT.................................................................................................................................................................................................................2911.0010000100
..............................................................................................................................................................................................................................................AACATTTAA-TATAC---------GATAC------------GAAAA-AG....................................................................................................................................................................................................................................................2611.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCCTC---TA-ACACGCTGAATTTTT--........................................................................................................2611.0011000000
..........................................................................................................................................................................................................CTTAATCTAGGTTTGTG--------TTTTGGT.........................................................................................................................................................................................................................................................................................................2411.0011000000
.............................................................................................................................................................................................................AATCTAGGTTTGTG--------TTTTGGT.........................................................................................................................................................................................................................................................................................................2111.0010000010
.........................................................................................................................................................................................................................................................................AC------------GAAAA-AGAGTTAATTA----------------------TA...................................................................................................................................................................................................................2011.0010000100
.......................................................................................................................................................................................................A--CTTAATCTAGGTTTGTG--------TTT.............................................................................................................................................................................................................................................................................................................2111.0010000100
......................................................................................................................................................................................................................................................A-TATAC---------GATAC------------GAAAA-AGAGT.................................................................................................................................................................................................................................................2111.0010000100
...........................................................................................................................................................................................................TTAATCTAGGTTTGTG--------TTTTGGTA........................................................................................................................................................................................................................................................................................................2411.0010000100
.....................................................................................................................................................................................................................................................................................................................................ATTTATTTTTTATACATAA--------CTCTA-A-CT.........................................................................................................................................................................2711.0010100000
...............................................................................................................................................................................................................................................ACATTTAA-TATAC---------GATAC------------GA..........................................................................................................................................................................................................................................................2011.0011000000
......................................................................................................................................................................................................................................................................GATAC------------GAAAA-AGAGTTAATT............................................................................................................................................................................................................................................2011.0010000100
......AAA--GT-TGAT-T-GATTTTCTT-T-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
..................................................................................................................................................................................................................................................TTTAA-TATAC---------GATAC------------GAAAA-AGA...................................................................................................................................................................................................................................................2311.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................AATTGTAAGCCTC---TA-ACACG....................................................................................................................2011.0010100000
................................................................................................................................................A-TT-TTACTTA-------------------------------------AACGATA--CTTAATCTAG...............................................................................................................................................................................................................................................................................................................................2711.0011000000
..................................................................................................................................................................................................................................................................................................................................................ACATAA--------CTCTA-A-CTTA----------AAC-A........................................................................................................................................................2011.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA---AAACCAATCAAAT-C-------------------TTTGT------------------.......2311.0010100000
.........................................................................................................................................................TTA-------------------------------------AACGATA--CTTAATCTAGGTTT...........................................................................................................................................................................................................................................................................................................................2411.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AATCT-A-G-----AAATCAAAA-TACTTCCGTC......................................................................2611.0010100000
.............................T-T-----GTGATAGC---------------AG-A--------------AA-----AATCCATAA-TT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAAT-C-------------------TTTGT------------------GAAACC.2011.0010100000
....................................................................................................................................................................................................GATA--CTTAATCTAGGTTTGT.........................................................................................................................................................................................................................................................................................................................2011.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCT-A-G-----AAATCAAAA-TACTTCCGT.......................................................................2411.0010000100
.....................................................................................................................................................................................................................................................AA-TATAC---------GATAC------------GAAAA-AGAGTT................................................................................................................................................................................................................................................2311.0010000100
........................................................................................................ATT------GA-------AAA-----CAG----AA-C-TAA-TT-TTACTTA-------------------------------------..................................................................................................................................................................................................................................................................................................................................................2611.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................A----------AAC-AAGA------TTCAATTGTAAGCCTC---TA-A........................................................................................................................2711.0011000000
.........................................................................................................................................................................................................................................................ATAC---------GATAC------------GAAAA-AGAGT.................................................................................................................................................................................................................................................1911.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCGTTTAA---AAACCAAT........................................................1911.0011000000
...........GT-TGAT-T-GATTTTCTT-T-----GTGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
..........................................................................................................................................................................................................CTTAATCTAGGTTTGTG--------TTT.............................................................................................................................................................................................................................................................................................................2011.0010000100
..................................................................................................................................CAG----AA-C-TAA-TT-TTACTTA-------------------------------------AACGATA--CTT......................................................................................................................................................................................................................................................................................................................................2811.0011000000
.......................................................................................................................................................................................................A--CTTAATCTAGGTTTGTG--------TTTTGGT.........................................................................................................................................................................................................................................................................................................2511.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................CAATTGTAAGCCTC---TA-ACACGCT..................................................................................................................2311.0011000000
..........................................................................................................................................................TA-------------------------------------AACGATA--CTTAATCTAGGTTTGTG--------T...............................................................................................................................................................................................................................................................................................................2711.0010100000
........................................................................................................................................................CTTA-------------------------------------AACGATA--CTTAATCTAGGTTTGT.........................................................................................................................................................................................................................................................................................................................2711.0010000100
droYak3
TCAAAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------AA-----AATCCATAA-TTGTACTTAATT------GA-------AAAA----AA-----AA-C-TAATTT-TTACGTT-------------------------------------AACGATA--CTTAATCTAGGTTTGTG--------TTTTGGTGTAAAACATTTAAG-ATAC---------GATAC------------AA----AGAGTTAATTA----------------------TAATTATATTTATTTTTTATACATAA--------CACTA-A-CTTA----------AAC-AAGA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT---ATCT-A-G-----AAATCAATC-TACTTCCGTTAAA---AAACCAATCAAAT-C-------------------TTTGT------------------GAA-ACGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................GTG--------TTTTGGTGTAAAACCC................................................................................................................................................................................................................................................................................................1916.00606000000000
.......................TTTTCTT-T-----GTGATAGC---------------AG-A--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00201000010000
.......................................................................................................................................................................................................................................................G-ATAC---------GATAC------------AA----AGAGTTAATTA----------------------TAATT................................................................................................................................................................................................................2812.00200000020000
.................................................................................................................................................................................................................................................ATTTAAG-ATAC---------GATAC------------AA----AGAGTT................................................................................................................................................................................................................................................2412.00200000020000
...........AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00202000000000
..........................................................................................................................................................................................................CTTAATCTAGGTTTGTG--------TTTTGGT.........................................................................................................................................................................................................................................................................................................2412.00201000010000
.............................................................................................................................................................................................................AATCTAGGTTTGTG--------TTTTGGT.........................................................................................................................................................................................................................................................................................................2112.00200100010000
.................................................................................................................................................................................................AACGATA--CTTAATCTAGGTTTGTG--------C...............................................................................................................................................................................................................................................................................................................2511.00110000000000
............................................................................................................................................C-TAATTT-TTACGTT-------------------------------------AACGATA--CTTA.....................................................................................................................................................................................................................................................................................................................................2511.00100001000000
...................................................................................................................................................................................................................................................TTAAG-ATAC---------GATAC------------AA----AGAGTT................................................................................................................................................................................................................................................2211.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................TAAGCCTC---TA-ACACGCTGA................................................................................................................1911.00101000000000
...........AT-TGAT-T-GATTTTCTT-T-----GTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.....................................................................................................................................................................................................ATA--CTTAATCTAGGTTTGTG--------T...............................................................................................................................................................................................................................................................................................................2111.00100000010000
.........................................................................................................................................................GTT-------------------------------------AACGATA--CTTAATCTAGGTTTGT.........................................................................................................................................................................................................................................................................................................................2611.00100000010000
...........AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAATC-TACTTCCGTTAAA---A...............................................................2211.00101000000000
..............TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.......................................................................................................................................................................................................................................................................................................................................TTATTTTTTATACATAA--------CACTA-A-CTTA----------.............................................................................................................................................................2711.00101000000000
.....................................................................................................................................................................................................................................TTGGTGTAAAACATTTAAG-ATAC---------GATA.........................................................................................................................................................................................................................................................................2711.00101000000000
............T-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCAATCAAAT-C-------------------TTTGT------------------GAA-AC.2411.00100100000000
...........AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
..........................................................................................................................................................................................................CTTAATCTAGGTTTGTG--------TTT.............................................................................................................................................................................................................................................................................................................2011.00110000000000
........A--AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-A--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
............................................................................................................................................................................................................................................AAAACATTTAAG-ATAC---------GATAC------------AA----AG....................................................................................................................................................................................................................................................2511.00100100000000
............................................................................................................................................................................................................TAATCTAGGTTTGTG--------TTTTGGTGTA......................................................................................................................................................................................................................................................................................................2511.00100000010000
...........................................................................................................................................................T-------------------------------------AACGATA--CTTAATCTAGGTTTGT.........................................................................................................................................................................................................................................................................................................................2411.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CT-A-G-----AAATCAATC-TACTTCCGTT......................................................................2311.00101000000000
......................................................................................................................................................TACGTT-------------------------------------AACGATA--CTTAATCTA................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..................................................................................................................................................................................................................................................TTTAAG-ATAC---------GATAC------------AA----AGAG..................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................TTATACATAA--------CACTA-A-CTTA----------AAC-AAGA------TT.............................................................................................................................................2911.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CCTC---TA-ACACGCTGAATTTTT---ATCT-A-G-----A.........................................................................................2811.00101000000000
....................................................................................................................................................................................................GATA--CTTAATCTAGGTTTGT.........................................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................................................................................................................................................................................................................................GGTGTAAAACATTTAAG-ATAC---------GATA.........................................................................................................................................................................................................................................................................2511.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAGCCTC---TA-ACACGCTGA................................................................................................................2311.00101000000000
....................................................................................................................................................................................................GATA--CTTAATCTAGGTTTGTG--------T...............................................................................................................................................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAAT-C-------------------TTTGT------------------GAA-AC.1911.00101000000000
....................................................................................................................................................................................................GATA--CTTAATCTAGGTTTGTG--------TTTTGGT.........................................................................................................................................................................................................................................................................................................2811.00100000010000
.......................................................................................................................................................................................................A--CTTAATCTAGGTTTGTG--------TTTTGGTGT.......................................................................................................................................................................................................................................................................................................2711.00100000010000
.............................................................................................................................................................................................................AATCTAGGTTTGTG--------TTTTGGTGTA......................................................................................................................................................................................................................................................................................................2411.00100000010000
..........................................................................................................................................................TT-------------------------------------AACGATA--CTTAATCTAGGTTTGT.........................................................................................................................................................................................................................................................................................................................2511.00110000000000
..............................................................................................................................................................................................................................................AACATTTAAG-ATAC---------GATAC------------AA----AGA...................................................................................................................................................................................................................................................2411.00101000000000
...........AT-TGAT-T-GATTTTCTT-T-----GTGATAGC---------------AG-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..........................................................................................................................................................................................................................................GTAAAACATTTAAG-ATAC---------GATA.........................................................................................................................................................................................................................................................................2211.00101000000000
..................................................................................................................................................................................................................................................TTTAAG-ATAC---------GATAC------------AA----AGA...................................................................................................................................................................................................................................................2011.00100000010000
droEug1
TCACAGAAA--AT-TGGT-T-GACTTTCTT-T-----GTGATAGA---------------AG-A--------------AA-----AAACCAAAA-TTGTACTTAATT------AA-------AAAAGAAAAA----CAA-T-TAATTT-TTACTTA-------------------------------------AATGATA--A----TCTAGGTTTGTG--------TTTTGGTGTAAAACATTTAAGTGTAC---------GATAC------------GAAAACAGAGTTAATTA----------------------TA------TTTATTTTTTATACATAA--------CTCAA-A-TCTT----------AAC-AAAA------TTCAATTTTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAC-TACTTCCGTTAAA-CAAAACCAATCAAAT-C-------------------TTTGT------------------GAAAACCSizeHit CountTotal NormTotal
No Reads
droBia1
TCACTAAAA--AT-TGCT-T-GATTTTCTT-T-----GTGATAGA---------------AG-A--------------AA-----AATCCAAAA-TTGTACTTAATT------AA-------AGGAG---AA----AAA-C-TAATTT-CTACTTA-------------------------------------AACGATA--A----TTTAGGTTTGTG--------TCTTGGTGTAAATCGTTTA-GCGTAC---------GACAC------------GAAATCAGAGTTAATTA----------------------TATTTATATTTATTTTTTATACATAA--------CACAG-A-CATA----------AAC-TTAA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCATAC-AACTTCCGTTAAAGAAAAACCAATCAAAT-C-------------------TTTGT------------------AAAAACCSizeHit CountTotal NormTotal
No Reads
droTak1
TCACAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGA---------------AG-A--------------AA-----AATCCAAAA-TTGTACTTATTT------AA-------ACAA----AAGAAATAA-C-AAGTTT-TTACTTA-------------------------------------AACGATA--A----TTTAGGTTTGTG--------TTTCGGTGTAAAACATTTAAGCGTAC---------GATAC------------GAAATCAGAGTTAATTA----------------------TATTTATATTTATTTTTTATACATAA--------CTCAA-C-CCTA----------AAC-GAAA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAC-TACTTCCGTTAAC---AAACCAATCAAAT-C-------------------TTTGT------------------GAAAACCSizeHit CountTotal NormTotal
No Reads
droEle1
TCACAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGA---------------AG-A--------------AA-----AATCCAAAA-TTGTACTTAATT------AA-------AAGA----AA----TACCT-TCATTT-TTACTTA-------------------------------------AAGATTA--G----ATTAGGTTTGTG--------TTTTGGTGTAAAATATTTAGACGTAC---------GATAC------------GAAAACAGAGTTAATTA----------------------TACTTATATTTATTTTTTATACATAA--------CTCAAAA-CCTA----------AAC-AAAA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAC-TACTTCCGTTAAAAAAAAACCAATCAAAT-C--T----------------TTTGT------------------GAAAACCSizeHit CountTotal NormTotal
No Reads
droRho1
TCACAGAAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAAA---------------AG-A--------------AA-----AATCCAAAA-TTGTACTTAATT------AA-------AAAG----AA----TACCT-TCACTT-TTACTTA-------------------------------------TAAATTA--C----TTTAGGTTTGTG--------TTTTGGTGTAAAATATTTAAGCGTAC---------GATAC------------GAAAACAGAGTTAATTA----------------------TACTTATATTTATTTTTTATACATAA--------CTCAA-A-CCTA----------AAC-GAAA------TTCAATTTTAAGCCTC---TA-ACACGCTGAATTTTG--TATCT-A-G-----AAATCAAAC-TACTTCCGTTTCA---AAACCAATCAAAT-C-------------------TTTGT------------------GAAAACCSizeHit CountTotal NormTotal
No Reads
droFic1
TCACAGAAA--AT-TCAT-T-GATTTTCTT-T-----GTGATAGA---------------AG-A--------------AA----AAATCCACAA-TTGTACTTAAAT------TA------AAA-A----AT----TAA-CATAA-TT-TTACTTA-------------------------------------AATAATA--C----ATTAGGTTTGTG--------TTTCGGTGTAAAACATTTAAGCATAC---------GATAC------------AAAA-CGGAGTTAATTA----------------------TATTTATATTTATTTTTTATACATAA--------CTTTA-A-CTTA----------AAC-AGAA------TTCAATTGTAAGCCTC---TA-ACACGCTGAATTTTT--AATCT-A-G-----AAATCAAAT-TACTTCCGCTAAA-A-AAACCAATCAAAT-C-------------------TTTGT------------------GAAAACCSizeHit CountTotal NormTotal
No Reads
droKik1
TCAAAGGAA--AT-TGAT-T-GATTTTCTT-T-----GTGATAGA---------------AG-A--------------AA-----AATCCAAAA-TTGTACTTAAATA-TTT-AA-------AAAG----AA----TAC-C-TAATTT-CGTCATA-------------------------------------AGGAATAGAA----TTTAGTTCTGTGTGTGTGT-ATTTGATGTGAACAATTTAAGCGTAC---------TAATC------------TAAAACAGAGTTAATTA----------------------TAATTATATTTATTTTGTATACATTA--------ATCGG-A-ACTA----------AACGAAAA------ACCAATTGTAAGATTC---TA-ACACGCTGAATTTTTA-AATCT-A-G-----AAATCGAAC-TACTTCCGTAA-----AGGCTAAACAAAA-T-------------------TTTGT------------------GAAAAC-SizeHit CountTotal NormTotal
No Reads
droAna3
TCAAAGAAA--AC-AAAT-C-AATTTTCTT-T-----GTGATAGA---------------AG-A--------------A---------CCCCAA-TTGTACTTAATTA-TT-A--------AA--------GG-----A---TAA-TT-TTACTTA-------------------------------------A--GATT--C----TATAGATTTCTG--------TCTTGATGTAAATCGCCTAAGCCTAC---------GATAA------------GAGAG-GGACTTCATTA----------------------TATTT-----------TTGTAA-----------------------G----------AGC-AAAAT-----TTTAAGTGTGAGCATC---CA-A-TCGCTGAATTTTA--C-ATT-A-G-----AAATCGAAC-TACTTCCGTAAAG-AGAAAACAATTAACT-TATT----------------TTAGT------------------G------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................GTAA-----------------------G----------AGC-AAAAT-----TTTAAGTGTGAGC..................................................................................................................................2613.003010020
....................................................................................................................................................................................................GATT--C----TATAGATTTCTG--------TCTT............................................................................................................................................................................................................................................................................................................2112.002000020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-TACTTCCGTAAAG-AG................................................................1912.002002000
.........................................................................................................................................................................................................................................................CTAC---------GATAA------------GAGAG-GGACTT................................................................................................................................................................................................................................................2011.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TA--C-ATT-A-G-----AAATCGAAC-TACTTCCGT.......................................................................2611.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAG-AGAAAACAATTAACT-TATT----------------TT............................2511.001010000
..................................................................................................................................................................................................................................................................................................................................................AA-----------------------G----------AGC-AAAAT-----TTTAAGTGT......................................................................................................................................2011.001000010
.......................................................................................................................................................................................................................................................GCCTAC---------GATAA------------GAGAG-GGACTT................................................................................................................................................................................................................................................2211.001100000
.............................................................................................................................................................................................................................................................................................GGACTTCATTA----------------------TATTT-----------TTGTAA-----------------------G----------AGC-.........................................................................................................................................................2611.001100000
.............................T-T-----GTGATAGA---------------AG-A--------------A---------CCCCAA-TT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.........................................................................................................................................................................................................................................................CTAC---------GATAA------------GAGAG-GGACTTCATT............................................................................................................................................................................................................................................2411.001010000
..........................................................................................................................................................................................................................................GTAAATCGCCTAAGCCTAC---------.............................................................................................................................................................................................................................................................................1911.001001000
...........................................GA---------------AG-A--------------A---------CCCCAA-TTGTACTTAATTA-TT-...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................A--C-ATT-A-G-----AAATCGAAC-TACTTCC.........................................................................2311.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAC-TACTTCCGTAAAG-AGA...............................................................2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAC-TACTTCCGTAAAG-AGAAAACA..........................................................2611.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................AAAT-----TTTAAGTGTGAGCATC---CA-A-T......................................................................................................................2411.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTA--C-ATT-A-G-----AAATCGAAC-TACTTCC.........................................................................2511.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................AT-----TTTAAGTGTGAGCATC---CA-A-TCGCT..................................................................................................................2611.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGAGCATC---CA-A-TCGCT..................................................................................................................2011.001100000
...................................................................................................................................................................................................................................TCTTGATGTAAATCGCCTAAGCCTAC---------GAT..........................................................................................................................................................................................................................................................................2911.001010000
.......................................................................................................................................................................................................................................................................................GAGAG-GGACTTCATTA----------------------TATT.................................................................................................................................................................................................................2011.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATC---CA-A-TCGCTGAATTTTA--C-......................................................................................................2011.001010000
...................................................................................................................................................................................................................................................CTAAGCCTAC---------GATAA------------GAGAG-......................................................................................................................................................................................................................................................2011.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTGTGAGCATC---CA-A-TCGCTGAA...............................................................................................................2611.001100000
.......................................................................................................................................................................................................................................GATGTAAATCGCCTAAGCCTA.......................................................................................................................................................................................................................................................................................2111.001001000
.....................................GTGATAGA---------------AG-A--------------A---------CCCCAA-TTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-TACTTCCGTAAAG-AGA...............................................................1811.001001000
..................................................................................................................................................................................................................................................................................................................................T-----------TTGTAA-----------------------G----------AGC-AAAAT-----TTTAAGTGT......................................................................................................................................2511.001000010
..........................................................................................................................................................................................................................................................TAC---------GATAA------------GAGAG-GGACTTCATT............................................................................................................................................................................................................................................2311.001000010
..........................................................................................................................................................................................................................................................TAC---------GATAA------------GAGAG-GGACTTCATTA----------------------TATT.................................................................................................................................................................................................................2811.001010000
....................................................................................................................................................................................................................................................TAAGCCTAC---------GATAA------------GAGAG-GGACT.................................................................................................................................................................................................................................................2411.001100000
....................................................................................................................................................................................................................................CTTGATGTAAATCGCCTAAGCCTAC---------.............................................................................................................................................................................................................................................................................2511.001010000
......................................................................................................................................................................................................................................TGATGTAAATCGCCTAAGCCTAC---------GAT..........................................................................................................................................................................................................................................................................2611.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-TACTTCCGTAAAG-AGAAAACA..........................................................2511.001000001
.......................................................................................................................................................................................................................................GATGTAAATCGCCTAAGCCT........................................................................................................................................................................................................................................................................................2011.001010000
........................................................................................................................................................................................................................CTG--------TCTTGATGTAAATCGCCTAAGC..........................................................................................................................................................................................................................................................................................2511.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATC---CA-A-TCGCTGAATTTTA--C-ATT-A-G-----A.........................................................................................2611.001000001
..........................................................................................................................................................................................................................................................TAC---------GATAA------------GAGAG-GGACTTCA..............................................................................................................................................................................................................................................2111.001000001
droBip1
TCAAAGAAA--AC-AAAT-C-AATTTTCTT-T-----GTGATAGA---------------AG-A--------------AA----AAATCCAAAA-TTGTACTTAATTAATT-A--------AA--------GG-----A---TAATTTTTGACTTA-------------------------------------AGTAACT--C----TATAGAATTCTG--------TCTTGATGTAAATCCATTAAGTTAAC---------GATAA------------GAGAG-CGACTTTATTA----------------------TATT-----------TTTGTACG----------------------A----------AACGAAAAT-----TTTAATTGTGAGCCACCACGA-AATCGCTGAATTTTTA-AAATT-A-G-----AAATCAAAC-TACTTCCTAAA-----AAACTAAC----T-TATTTTAGTGTTAAACAAGATTTGT------------------GAAGGACSizeHit CountTotal NormTotal
No Reads
dp5
TCACGGAAA--TTTTCATAC-CATTTTCTT-T-----GTGATAGA---------------AG-A--------------AAAAAAAAATCTACAATTTGTACTTAAAT------TAATTTTAAAAAAGA--AAG-ATCACCTATAATTT-GTACTTGGAAA----------------------------------ATTTTA--C----TCTAGTTTTGTGTG----TTTTTTGGTGTAGAACGAT---------------------ACAAAAAAGGAAGAGAA--GAGAGCTAATTA----------------------TATTTAAATTTATTTTTTATACA--------------------CTA----------AACGAAAC------ATCAATTGTA-GCATC---TAAATACGCTGAATTTTTA-AAACT-A-G-----GAATCAAGAAAACTTCCCCTCTA-AGA-AC---TCAAA-----------------------TTGT------------------AAAA--GSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................TACGCTGAATTTTTA-AAACT-A-G-----GAAT......................................................................................2614.0040000000310
.................................................................................................................................................................................................................................................GAT---------------------ACAAAAAAGGAAGAGAA--GAGA...................................................................................................................................................................................................................................................2413.0030110100000
......................................................................................................................................................................................................................TTGTGTG----TTTTTTGGTGTAGAAC..................................................................................................................................................................................................................................................................................................2312.0020000001001
........................................................................................................................................................................................................................................................................................................................................................................................CGAAAC------ATCAATTGTA-GCATC---T...........................................................................................................................2211.0010100000000
....................................................................................................................................................................................................................TTTTGTGTG----TTTTTTGGTGTAGAACG.................................................................................................................................................................................................................................................................................................2611.0010000001000
................ATAC-CATTTTCTT-T-----GTGATAGA---------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGAAAACTTCCCCTCTA-AGA-AC---T........................................................2711.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AAATACGCTGAATTTTTA-AAACT-A-G-----GA........................................................................................2711.0010100000000
................................................................................................................................................................................................................CTAGTTTTGTGTG----TTTTTTGGT.........................................................................................................................................................................................................................................................................................................2211.0010010000000
......................................................................................................................................................................................................................................TGGTGTAGAACGAT---------------------ACAAAAAAGGAAG.............................................................................................................................................................................................................................................................2711.0010000000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACTTCCCCTCTA-AGA-AC---TCA......................................................2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................A----------AACGAAAC------ATCAATTGTA-GCATC---T...........................................................................................................................2511.0010100000000
..........................................................................................................................................................................................................................GTG----TTTTTTGGTGTAGAAC..................................................................................................................................................................................................................................................................................................1911.0010000100000
...........................................................................................................................................................................................................................................TAGAACGAT---------------------ACAAAAAAGGAAGAGAA--GA.....................................................................................................................................................................................................................................................2811.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................CAATTGTA-GCATC---TAAATAC.....................................................................................................................2011.0010100000000
.................................................................................................................................................................................................................................................................................................................................................TACA--------------------CTA----------AACGAAAC------ATCAATTGTA-GC..................................................................................................................................2711.0010010000000
...................................................................................................................................................................................................................GTTTTGTGTG----TTTTTTGGTGTA......................................................................................................................................................................................................................................................................................................2211.0010000001000
.................................................................................................................................................................................................................................................GAT---------------------ACAAAAAAGGAAGAGA..........................................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................GTTTTGTGTG----TTTTTTGGTGTAGAA...................................................................................................................................................................................................................................................................................................2511.0010000000010
................................................................................................................................................................................................................................................................................................................................................ATACA--------------------CTA----------AACGAAAC------ATC............................................................................................................................................1911.0010010000000
....................................................................................................................................................................................................................TTTTGTGTG----TTTTTTGGTGTAGAAC..................................................................................................................................................................................................................................................................................................2511.0010000100000
................................................................................................................................................................................................................................................................................................................................................ATACA--------------------CTA----------AACGAAAC------ATCA...........................................................................................................................................2011.0010100000000
...............................................................................................................................................................A----------------------------------ATTTTA--C----TCTAGTTTTGTGTG----T.................................................................................................................................................................................................................................................................................................................2311.0010100000000
...........................................................................................................................................................................................................................TG----TTTTTTGGTGTAGAACGAT---------------------ACA.......................................................................................................................................................................................................................................................................2411.0010100000000
.................................................................................................................................................................................................................................................GAT---------------------ACAAAAAAGGAAGAGAA--G......................................................................................................................................................................................................................................................2111.0010000001000
......................................................................................................................................ATCACCTATAATTT-GTACTTGGAA....................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
...................C-CATTTTCTT-T-----GTGATAGA---------------AG-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000000
..............................................................................................................................................................................................................................................................................................................................................TTATACA--------------------CTA----------AACGAAAC------ATC............................................................................................................................................2111.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................ACGAAAC------ATCAATTGTA-GCATC---TA..........................................................................................................................2411.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGAATTTTTA-AAACT-A-G-----GAATCAA...................................................................................2711.0010000001000
...................................................................................................................................................................................................................GTTTTGTGTG----TTTTTTGGTGTAGAAC..................................................................................................................................................................................................................................................................................................2611.0010000001000
.....................................................................................................................................................................................................................TTTGTGTG----TTTTTTGGTGTAGAACG.................................................................................................................................................................................................................................................................................................2511.0010100000000
..........................................................................................................................................................................................................................GTG----TTTTTTGGTGTAGAACGAT---------------------A.........................................................................................................................................................................................................................................................................2311.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................CGAAAC------ATCAATTGTA-GCA.................................................................................................................................1911.0010100000000
...........................................................................................................................................................................................................................TG----TTTTTTGGTGTAGAACGA................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AATACGCTGAATTTTTA-AAACT-..................................................................................................2211.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATTTTTA-AAACT-A-G-----GA........................................................................................2011.0010000100000
.................................................................................................................................................................................................................TAGTTTTGTGTG----TTTTTTGGT.........................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................GTTTTGTGTG----TTTTTTGGT.........................................................................................................................................................................................................................................................................................................1911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAAACTTCCCCTCTA-AGA-AC---T........................................................2511.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................AACGAAAC------ATCAATTGTA-GCATC---............................................................................................................................2311.0010010000000
........................TTTCTT-T-----GTGATAGA---------------AG-A--------------AAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
.....................................................................................................................................................................................................................TTTGTGTG----TTTTTTGGTGTAGAAC..................................................................................................................................................................................................................................................................................................2411.0010000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCCCCTCTA-AGA-AC---TCAAA-----------------------TTG..........................2511.0010100000000
..................................................................................................................................................................................................................................TTTTTGGTGTAGAACGAT---------------------A.........................................................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................TTTAAAAAAGA--AAG-ATCACCC......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.........................................................................................................................................................................................................................................................................ACAAAAAAGGAAGAGAA--GAGA...................................................................................................................................................................................................................................................2120.5010100000000
..........................................................................................................................................................................................................................................................................CAAAAAAGGAAGAGAA--GA.....................................................................................................................................................................................................................................................1820.5010100000000
droPer2
TCACGGAAA--TTTTCATAC-CATTTTCTT-T-----GTGATAGA---------------AG-A--------------AAAAAAAAATCTACAATTCGTACTTAAAT------TAATTTTAAA-AA----AAG-ATCACCTATAATTT-GTACTTGGAAA----------------------------------ATTTTA--C----TCTAGTTTTGTGTG----TTTTTTGGTGTAGAACGAT---------------------ACAAAAAAGGAAGAGAA--GAGAGCTAATTA----------------------TATTTAAATTTATTTTTTATACA--------------------CTA----------AACGAAAC------ATCAATTGTA-GCATC---TAAATACGCTGAATTTTTA-AAACT-A-G-----GAATCAAGAAAACTTCCCCTCTA-AGA-AC---TCAAA-----------------------TTGT------------------AAAA--GSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................GTG----TTTTTTGGTGTAGAAC..................................................................................................................................................................................................................................................................................................1916.006402000
...............................................................................................................................................................................................................................................................................AAGGAAGAGAA--GAGAGCT................................................................................................................................................................................................................................................1814.004310000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AACT-A-G-----GAATCAAGAAAACTTCCCCT......................................................................2612.002200000
....................................................................................................................................................................................................................................TTTGGTGTAGAACGAT---------------------AC........................................................................................................................................................................................................................................................................1812.002200000
.............................................................................................................................................................................................................................................................................AAAAGGAAGAGAA--GAGAGCT................................................................................................................................................................................................................................................2012.002101000
...................................................................................................................................................................................................................GTTTTGTGTG----TTTTTTGGTGTAGAACGA................................................................................................................................................................................................................................................................................................2812.002000002
...................................................................................................................................................................................................................................................................................................................................................................................................................C---TAAATACGCTGAATTTTTA-AAACT-..................................................................................................2512.002200000
...................................................................................................................................................................................................................GTTTTGTGTG----TTTTTTGGTGTAGAAC..................................................................................................................................................................................................................................................................................................2611.001000001
..................................................................................................................................................................................................ATTTTA--C----TCTAGTTTTGTGTG----T.................................................................................................................................................................................................................................................................................................................2211.001010000
.....................................................................................................................................................GTACTTGGAAA----------------------------------ATTTTA--C----TCTAGT..............................................................................................................................................................................................................................................................................................................................2411.001000001
..........................................................................................................................................................................................................................................GTAGAACGAT---------------------ACAAAAAAGGAAGA............................................................................................................................................................................................................................................................2411.001100000
..........................................................................................................................................................................................................................................GTAGAACGAT---------------------ACAAAAAAGGAAGAGAA--.......................................................................................................................................................................................................................................................2711.001100000
...............CATAC-CATTTTCTT-T-----GTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
..........................................................................................................................................................................................................................................GTAGAACGAT---------------------ACAAAAAAGGAAGAGA..........................................................................................................................................................................................................................................................2611.001100000
......................................................................................................................................................................................................................................................................................................................................................................................AACGAAAC------ATCAATTGTA-GCATC---T...........................................................................................................................2411.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCCCCTCTA-AGA-AC---TCAAA-----------------------TT...........................2511.001100000
.......................................................................................................................................................................................................................TGTGTG----TTTTTTGGTGTAGAACG.................................................................................................................................................................................................................................................................................................2311.001001000
.......................................................................................................................................................ACTTGGAAA----------------------------------ATTTTA--C----TCTAGT..............................................................................................................................................................................................................................................................................................................................2211.001000010
..................................................................................................................................................................................................ATTTTA--C----TCTAGTTTTGTG........................................................................................................................................................................................................................................................................................................................1911.001010000
.......AA--TTTTCATAC-CATTTTCTT-T-----GT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droWil2
TCAAGGATA--AT-ACAT-T-GAGTTTCCT-T-----GTGATAAA-----GAGTTTAAGACGCA---------------A-----AAT---TGT-TTGTACTTAATT------T-------------------------------------ACTTA---AGTTTTACTTAATTAATTACACATTATTATCAAATTCGTTT--CTAAGACCAAACTTCTA--------TCCCCATCCACACACACAAAAACACA---------CACAC------------GAAAA-TCAATTAATTATATACACACACACATATATATATATAAATATTTATTTTTC-TAC-CAA--------CTAAA-AAC-AAAAAAAAAGAAAGAAAAAACTAAAAGTCAA-AGTGAACGTA----G-GAACGCTGAATTTTTGCAAATT-A-G-----AAATCAAGCAAACTTCCCTTCA----------TTTAAATTTAATACAATTTAAGTTTAGATTAGT------------------GAGGACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAGTTTAGATTAGT------------------GA.....2013.00302010
.....................................GTGATAAA-----GAGTTTAAGACGCA---------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200110
.....................................GTGATAAA-----GAGTTTAAGACGCA---------------A-----A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
...........AT-ACAT-T-GAGTTTCCT-T-----GTGATAAA-----GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTTTAGATTAGT------------------GAG....1911.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAATTTAAGTTTAGATTAGT------------------GA.....2611.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAAATT-A-G-----AAATCAAG..................................................................................2111.00100010
........A--AT-ACAT-T-GAGTTTCCT-T-----GT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGCAAACTTCCCTTCA----------TT........................................................2211.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCAA-AGTGAACGTA----G-GAACGCTGAA...............................................................................................................2511.00100100
.....................................GTGATAAA-----GAGTTTAAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGTTTAGATTAGT------------------GAGGACA2411.00101000
..................................................................................................................................................................................................TCGTTT--CTAAGACCAAACTTCTA--------TCCC............................................................................................................................................................................................................................................................................................................2711.00101000
......................................................................................................................................................................................................................TTCTA--------TCCCCATCCACACACA................................................................................................................................................................................................................................................................................................2111.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................GAACGTA----G-GAACGCTGAAT..............................................................................................................1911.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTA----G-GAACGCTGAATTTTTG.........................................................................................................2011.00100010
......................AGTTTCCT-T-----GTGATAAA-----G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGTA----G-GAACGCTGAATT.............................................................................................................2211.00100100
.....................................GTGATAAA-----GAGTTTAAGACGCA---------------A-----AAT---T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
..........................................................................................................................................................................................TATCAAATTCGTTT--CTAAGACC.................................................................................................................................................................................................................................................................................................................................2211.00110000
....................................................................................................................................................................................CATTATTATCAAATTCGTTT--CTAAGACC.................................................................................................................................................................................................................................................................................................................................2811.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATTTAAGTTTAGATTAGT------------------GA.....2511.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAATTTAAGTTTAGATTAGT------------------.......2411.00110000
.......................................GATAAA-----GAGTTTAAGACGCA---------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTTTAGATTAGT------------------GA.....1811.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................AGTCAA-AGTGAACGTA----G-GAA......................................................................................................................2011.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................GAACGCTGAATTTTTGCAAATT-A-G-----AA........................................................................................2611.00101000
......................................................................................................................................................................................TTATTATCAAATTCGTTT--CTAAGACC.................................................................................................................................................................................................................................................................................................................................2611.00110000
....................................................GTTTAAGACGCA---------------A-----AAT---TGT-TTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATTTAAGTTTAGATTAGT------------------.......2311.00100100
.....GATA--AT-ACAT-T-GAGTTTCCT-T-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................AAAGTCAA-AGTGAACGTA----...........................................................................................................................1811.00100010
................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAGAAAAAACTAAAAGTCAA-AGT......................................................................................................................................2811.00100100
.................T-T-GAGTTTCCT-T-----GTGATAAA-----G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......................................................TTAAGACGCA---------------A-----AAT---TGT-TTGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.....................................GTGATAAA-----GAGTTTAAGACGCA---------------A-----AAT---........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
......ATA--AT-ACAT-T-GAGTTTCCT-T-----GT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
....................................................................................................................................................................................................................................................................................................................................................................A-AAC-AAAAAAAAAGAAAGAAAA.......................................................................................................................................................2250.20100010
..........................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGAAAGAAAAAAC....................................................................................................................................................21100.10100010
...........................................................................................................................................................................................................................................CACACACACAAAAACACA---------CA...........................................................................................................................................................................................................................................................................20200.05101000
droVir3
AAAA--------T-AG-C-C-G----TCTTTTGGGTTGAGACA-CAGAA-AAATTGA---AG-----------------A-----ACTCCAAAA-TTGTACTTAATTA-TT-G--------AG--------C-----TA-T-TTATTT-ATACTTA-------------------------------------AACAATT--C----ACTTGTTCTGTGTG-------CTTAGTGTAGTATTTGAAAGCCTGC---------TA---------------------AAATCTTATTA----------------------TATTTATATATATTTTTTTTACAACAAGTTTTTAAACAA-G-CCTA---------AAAC-ATCA------TCTACATCTAAACCAC---T----TCGCTGAATTTTC--AA-CA-ACAATATTAAATCGTGT-AACTTCCCGAA-----AGTCAAATCAAAA-A-------------------ATTG--------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................ATTGA---AG-----------------A-----ACTCCAAAA-TTGTACTT............................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003010100000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................ATT--C----ACTTGTTCTGTGTG-------CTTAGTGTA......................................................................................................................................................................................................................................................................................................2712.002000000000000000001000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................A------TCTACATCTAAACCAC---T----TCGCT..................................................................................................................2312.002000000000000000001000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................CTACATCTAAACCAC---T----TCGCTGA................................................................................................................2312.002001000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................GTATTTGAAAGCCTGC---------TA---------------------AA....................................................................................................................................................................................................................................................2012.002000000000000000002000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGT-AACTTCCCGAA-----AGTCA...........................................................2412.002001000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................CTTGTTCTGTGTG-------CTTAGTGTAGT....................................................................................................................................................................................................................................................................................................2412.002000000000000000001000000000000000000000000000000000000000000010
................................................A-AAATTGA---AG-----------------A-----ACTCCAAAA-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
..................................................AAATTGA---AG-----------------A-----ACTCCAAAA-TT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000001001000000000000000000000000000000000000000000000
........................................................A---AG-----------------A-----ACTCCAAAA-TTGTACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002020000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................GTG-------CTTAGTGTAGTATTTGAAA............................................................................................................................................................................................................................................................................................2212.002000000000000000000010100000000000000000000000000000000000000000
.......................................................GA---AG-----------------A-----ACTCCAAAA-TTGTACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000100000000000000000000000000000001000000000000000000000000000
..........................................................................................................................................................................................................................................GTAGTATTTGAAAGCCTGC---------TA---------------------A.....................................................................................................................................................................................................................................................2212.002000000000000000002000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TAAACAA-G-CCTA---------AAAC-ATCA------TCTAC..........................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...................C-G----TCTTTTGGGTTGAGACA-CAGAA-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................ACAAGTTTTTAAACAA-G-CCTA---------..............................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AATT--C----ACTTGTTCTGTGTG-------CTTAGTGTA......................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................AAC-ATCA------TCTACATCTAAACCAC---T----.......................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................A-TT-G--------AG--------C-----TA-T-TTATTT-ATAC..........................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
.......................................GACA-CAGAA-AAATTGA---AG-----------------A-----ACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................C-ATCA------TCTACATCTAAACCAC---T----TCGCT..................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATTAAATCGTGT-AACTTCCCGA......................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................GTG-------CTTAGTGTAGTATTTGAAAGCCTG.......................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
......................................................TGA---AG-----------------A-----ACTCCAAAA-TTGTACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CTACATCTAAACCAC---T----TCGCTGAAT..............................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AAAC-ATCA------TCTACATCTAAACC.................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CTGTGTG-------CTTAGTGTAGT....................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................TCTACATCTAAACCAC---T----TCG....................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CA------TCTACATCTAAACCAC---T----TCGCT..................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................G-CCTA---------AAAC-ATCA------TCTACATCT......................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GTTCTGTGTG-------CTTAGTGTAGT....................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................AGTGTAGTATTTGAAAGCCTGC---------TA---------------------AA....................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
..........................................A-CAGAA-AAATTGA---AG-----------------A-----ACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TATTTGAAAGCCTGC---------TA---------------------AAATCTT...............................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TCTGTGTG-------CTTAGTGTAGTATTTGAAA............................................................................................................................................................................................................................................................................................2711.001000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TA---------AAAC-ATCA------TCTACATCTAAACC.................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................TAATTA-TT-G--------AG--------C-----TA-T-TTATTT-..............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.......................................GACA-CAGAA-AAATTGA---AG-----------------A-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAATCGTGT-AACTTCCCGAA-----AGTCA...........................................................2811.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AGTTTTTAAACAA-G-CCTA---------AAAC-.........................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................TTGTACTTAATTA-TT-G--------AG--------C-----TA-T-TT...................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................GTG-------CTTAGTGTAGTATTTGAA.............................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................ATTTGAAAGCCTGC---------TA---------------------AAA...................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
..............................................GAA-AAATTGA---AG-----------------A-----ACTCCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AC-ATCA------TCTACATCTAAACCAC---T----TCGCC..................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TA-------------------------------------AACAATT--C----ACTTGTTCTGTGTG-------CTTA...........................................................................................................................................................................................................................................................................................................2811.001000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................ATTTGAAAGCCTGC---------TA---------------------AAATCTTATTA----------------------T....................................................................................................................................................................................................................2811.001000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................CTGTGTG-------CTTAGTGTAGTATTTGAAA............................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................TA-------------------------------------AACAATT--C----ACTTGTTCTGTG........................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................ACTTAATTA-TT-G--------AG--------C-----TA-T-TT...................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AGTATTTGAAAGCCTGC---------TA---------------------A.....................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
...................................................AATTGA---AG-----------------A-----ACTCCAAAA-TTGTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.........................................CA-CAGAA-AAATTGA---AG-----------------A-----ACTCCAAAA-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000100000000000000000000000
.....................................................................................................................................................................................................ATT--C----ACTTGTTCTGTGTG-------CTTAGTGT.......................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................ACTTGTTCTGTGTG-------CTTAGTGTAGTAT..................................................................................................................................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
.............................TTTGGGTTGAGACA-CAGAA-AA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
........................................ACA-CAGAA-AAATTGA---AG-----------------A-----ACTCCAAAA-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000100000000000000000000000000000000
...........................................................................................AAA-TTGTACTTAATTA-TT-G--------AG--------C-----TA-T-.....................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
..AA--------T-AG-C-C-G----TCTTTTGGGTTGAGACA-C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CA------TCTACATCTAAACCAC---T----TCGC...................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AC---T----TCGCTGAATTTTC--AA-CA-..................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATCGTGT-AACTTCCCGA......................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
..................................................AAATTGA---AG-----------------A-----ACTCCAAAA-TTGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
........................................................................................................ATTA-TT-G--------AG--------C-----TA-T-TTATTT-A.............................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................GTACTTAATTA-TT-G--------AG--------C-----TA-T-T....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.............................................AGAA-AAATTGA---AG-----------------A-----ACTCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................TCTGTGTG-------CTTAGTGTAGT....................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGT-AACTTCCCGAA-----AGTCAAATC.......................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TGTG-------CTTAGTGTAGTATTTGAAAGCC.........................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
...A--------T-AG-C-C-G----TCTTTTGGGTTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................T-G--------AG--------C-----TA-T-TTATTT-ATACT.........................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................G----TCTTTTGGGTTGAGACA-CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................A-CAGAA-AAATTGA---AG-----------------A-----ACTCCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GTAGTATTTGAAAGCCTGC---------T............................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AACTTCCCGAA-----AGTCAAATC.......................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGTGT-AACTTCCCGAA-----A...............................................................2111.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAATCGTGT-AACTTCCCGAA-----................................................................2311.001000000000000000010000000000000000000000000000000000000000000000
.....................G----TCTTTTGGGTTGAGACA-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
...................................TTGAGACA-CAGAA-AAATTGA---A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.AAA--------T-AG-C-C-G----TCTTTTGGGTTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GTAGTATTTGAAAGCCTGC---------TA---------------------AA....................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
...............G-C-C-G----TCTTTTGGGTTGAGACA-CAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
..AA--------T-AG-C-C-G----TCTTTTGGGTTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGT-AACTTCCCGAA-----AGTCAAAT........................................................2511.001000000000000000000000000000001000000000000000000000000000000000
................................................A-AAATTGA---AG-----------------A-----ACTCCAAAA-TTGTACTT............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATCA------TCTACATCTAAACCAC---T----TCG....................................................................................................................2411.001000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................T-TTATTT-ATACTTA-------------------------------------AACAATT--C----ACT.................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..AA--------T-AG-C-C-G----TCTTTTGGGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
AAAA--------T-AG-C-C-G----TCTTTTGGGTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................A-TT-G--------AG--------C-----TA-T-TTATTT-ATACTTA-------------------------------------..................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
AAAA--------T-AG-C-C-G----TCTTTTGGGTTGAGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
....................................TGAGACA-CAGAA-AAATTGA---AG-----------------A-----ACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................GTGTAGTATTTGAAAGCCT........................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TTAAACAA-G-CCTA---------AAAC-ATCA------TC.............................................................................................................................................2311.001000000000000000000000000000000100000000000000000000000000000000
...................................................AATTGA---AG-----------------A-----ACTCCAAAA-TTGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
.......................................................GA---AG-----------------A-----ACTCCAAAA-TTGTACTTAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000000000000000000000000000000000000000000000000000000000000
..................................................AAATTGA---AG-----------------A-----ACTCCAAAA-TTGTACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
....................................................ATTGA---AG-----------------A-----ACTCCAAAA-TTGTACTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TTA-------------------------------------AACAATT--C----ACTTGTTCTGTGTG-------CT.............................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................ATTTTTTTTACAACAAGTTTTTAAACAA-.............................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT-AACTTCCCGAA-----AGTC............................................................1911.001000000000000000000000010000000000000000000000000000000000000000
....................................TGAGACA-CAGAA-AAATTGA---AG-----------------A-----A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................CTCCAAAA-TTGTACTTAATTA-TT-G--------AG--------C-----..........................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
......................................................TGA---AG-----------------A-----ACTCCAAAA-TTGTACTTAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000010000000
....................................TGAGACA-CAGAA-AAATTGA---AG-----------------A-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000001000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATCTAAACCAC---T----TCGCTGAAT..............................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
droMoj3
GCACAGCAAAAAA-TACT-TATATATTTTT-T-----GTGATAAC----CGTTTTGA---AG-----------------A-----TATCCAAAATTTGTACTTAATTA-TT-G--------AA-------------TTA-T-TCATTT-ATACTTA-------------------------------------AACAATT--A----TTTGGTTTGGTG--------TATAAATCTAAAGCCT--------GCTAAAGAAAAAATAA------GAAAA-AAA---AAAGAAACT---------------------TTATATTTATATATATTTTT---ACA----------------------A----------AAC-AAAT------TTC-----TAAA--------A-TTACGCTGAATTTTT--A-TCTATCTAAATAAAATCGCGT-AACTTCCCAA------AGTCAAATCAAA--C--------------------AAGG------------------AAAAACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCCCAA------AGTCAAATCAAA--C--------------------AAGG------------------A......2812.002200000
..................................................................................................................................................................................................ACAATT--A----TTTGGTTTGGTG--------T...............................................................................................................................................................................................................................................................................................................2012.002000002
....................................................................................................................................................................................................AATT--A----TTTGGTTTGGTG--------T...............................................................................................................................................................................................................................................................................................................1812.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TT--A-TCTATCTAAATAAAATCGCGT-................................................................................2412.002100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--A-TCTATCTAAATAAAATCGCGT-................................................................................2511.001100000
....................ATATATTTTT-T-----GTGATAAC----C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................A--------A-TTACGCTGAATTTTT--A-TCTA..................................................................................................2211.001100000
............................................................................................................................................................................................................................................................................................................................................................................................AT------TTC-----TAAA--------A-TTACGCTGAATT.............................................................................................................2211.001100000
.........................................................................................................................................................................................................................................................................................................................................ATTTTT---ACA----------------------A----------AAC-AAAT------TTC-----TAAA--------A-T........................................................................................................................2611.001100000
..................................................................................................................................................................................................ACAATT--A----TTTGGTTTGGTG--------TATAA...........................................................................................................................................................................................................................................................................................................2411.001100000
......................................................................................................................................................................................................................................AAATCTAAAGCCT--------GCTAAAGAAAAA............................................................................................................................................................................................................................................................................2511.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCCCAA------AGTCAAATCAAA--C--------------------AAGG------------------A......2711.001100000
.....................................GTGATAAC----CGTTTTGA---AG-----------------A-----T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................AT------TTC-----TAAA--------A-TTACGCTGAAT..............................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCGT-AACTTCCCAA------AGTCAAAT........................................................2511.001100000
........................................................................................................................................................................................................................................................................................................................................................................................C-AAAT------TTC-----TAAA--------A-TTACGCTGAATT.............................................................................................................2511.001100000
........................................................................................................ATTA-TT-G--------AA-------------TTA-T-TCATTT-ATACTT........................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.....................................................................................................................................................................................................ATT--A----TTTGGTTTGGTG--------TATAAATC........................................................................................................................................................................................................................................................................................................2411.001100000
................................................................................................................G--------AA-------------TTA-T-TCATTT-ATACTTA-------------------------------------AACAATT--.........................................................................................................................................................................................................................................................................................................................................2711.001100000
.......................................................................................................................................................................................................T--A----TTTGGTTTGGTG--------TATAAATCTAAAGC..................................................................................................................................................................................................................................................................................................2811.001000100
..............TACT-TATATATTTTT-T-----GTGATAAC----CGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.............................................................G-----------------A-----TATCCAAAATTTGTACTT............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT--A-TCTATCTAAATAAAATCGCGT-................................................................................2611.001000001
........................ATTTTT-T-----GTGATAAC----CGTTTTGA---AG-----------------A-----TA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................TTC-----TAAA--------A-TTACGCTGAATT.............................................................................................................2011.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAAA--C--------------------AAGG------------------AAAAACA2011.001100000
............A-TACT-TATATATTTTT-T-----GTGATAAC----C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
............................TT-T-----GTGATAAC----CGTTTTGA---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.........................................................................................................................................................................................................................................TCTAAAGCCT--------GCTAAAGAAAAAATAA------G.................................................................................................................................................................................................................................................................2711.001100000
droGri2
ACGCAGAAA--AT-TCGT-A-AATTTC--G-T-----GTGATAAG----AATTAGG---AGGGAAAAATACCCAACAACA-----ACAACAAAA-TTGTACTTAATTA-TT-G--------AA-------AT----TTA-T-TTGTTT-ATACTTAAATA----------------------------------GCATT---G----ATTAGTTCTGTGTGAGTGTGTTTTGGTGTAGACATTTTAAGCCTAC---------AAAA--------------------CATCTAATTA----------------------TATTTATATATATTTTTTA--CATTT--------TTTAAAAAC-AA---------AAGAGAAAAT-----TCTACATCTAAACCAC---AA---ACGCTGAATTTTT--CGACT-A-AAAATAAAATCGAGT-AACTTCCCAAA-----AGTCAAATCAAAT-CAAT----------------TTTGTAAAAAACAAAAAACAAAAGAAAACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAGT-AACTTCCCAAA-----AGT.............................................................2211.00101

Generated: 05/18/2015 at 11:20 PM