dsi_10452

########################################################################################################################################################################################################################################################## ACGGACTGAAAGATCAACGGCTGGCTCTCAAATGGATTAAGCAGAATATAGCCAGTTTCGGCGGAGAACCACAGAACGTACTGTTGATTGGTCACTCCGCTGGAGGAGCTTCGGTCCATCTGCAGATGCTTCGTGAGGATTTCGGTCAGCTGGCCAAGGCGGCATTCTCGTTTAGCGGGAATGCTCTGGATCCATGGGTTGTCCAGAAGGGCGCAAGGGGACGAGCCTTTGAACTGGGACGCACCGTGGG ********************************************************************..........(((((..(((((((....(((((.(((((((((...((((....)))).....))))).))))..))))))))))))))))).*************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR902009 testis	O001 Testis	M025 embryo	M023 head	M053 female body	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo
......................................................................ACAGAACGTACTGTTGATTGGTCACT..........................................................................................................................................................	26	0	1	18.00	18	18	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAGAACGTACTGTTGATTGGTCACT..........................................................................................................................................................	25	0	1	15.00	15	11	1	0	3	0	0	0	0	0	0	0	0
......................................................................ACAGAACGTACTGTTGATTGGTCACTCC........................................................................................................................................................	28	0	1	12.00	12	12	0	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGCT....................................................................................................................................................................................................................................	22	0	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0
......................................................................ACAGAACGTACTGTTGATTGGTCAC...........................................................................................................................................................	25	0	1	7.00	7	7	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGGTCACT..........................................................................................................................................................	24	0	1	7.00	7	7	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAGAACGTACTGTTGATTGGTCACTCC........................................................................................................................................................	27	0	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0
......................................................................ACAGAACGTACTGTTGATTGGTCACTC.........................................................................................................................................................	27	0	1	6.00	6	5	1	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGC.....................................................................................................................................................................................................................................	21	0	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TCGGTCAGCTGGCCAAGGCGGC.......................................................................................	22	0	1	5.00	5	4	0	0	0	1	0	0	0	0	0	0	0
......................................................................GCAGAACGTACTGTTGATTGGTCACT..........................................................................................................................................................	26	1	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0	0
.........................................................................GAACGTACTGTTGATTGGTCACTCC........................................................................................................................................................	25	0	1	4.00	4	2	2	0	0	0	0	0	0	0	0	0	0
..........................................................................AACGTACTGTTGATTGGTCACTCC........................................................................................................................................................	24	0	1	3.00	3	1	2	0	0	0	0	0	0	0	0	0	0
.CGGACTGAAAGATCAACGGCT....................................................................................................................................................................................................................................	21	0	1	3.00	3	1	0	0	2	0	0	0	0	0	0	0	0
.......................................................................CAGAACGTACTGTTGATTGGTCACTC.........................................................................................................................................................	26	0	1	3.00	3	2	0	1	0	0	0	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGGTCACTC.........................................................................................................................................................	25	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTTTCGGCGGAGAACCACAGAAC.............................................................................................................................................................................	24	0	1	3.00	3	1	0	0	0	2	0	0	0	0	0	0	0
.......................................................................CAGAACGTACTGTTGATTGGTCAC...........................................................................................................................................................	24	0	1	3.00	3	2	1	0	0	0	0	0	0	0	0	0	0
..GGACTGAAAGACCAACGGCTGGCTCTCA............................................................................................................................................................................................................................	28	1	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0
.........................................................................GAACGTACTGTTGATTGGTCACTC.........................................................................................................................................................	24	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0
.............................................ATATAGCCAGTTTCGGCGGAGAACC....................................................................................................................................................................................	25	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0
...............................................ATAGCCAGTTTCGGCGGAGAACC....................................................................................................................................................................................	23	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0
...GACTGAAAGATCAACGGCTGGCTCT..............................................................................................................................................................................................................................	25	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
......................................................................GCAGAACGTACTGTTGATTGGTCACTC.........................................................................................................................................................	27	1	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
....................................................CAGTTTCGGCGGAGAACC....................................................................................................................................................................................	18	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCAAGGGGACGAGCCTTTGAACTGGGA...........	27	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
......................GGCTCTCAAATGGATTAAGCAGAATATAG.......................................................................................................................................................................................................	29	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0
...........................................................................ACGTACTGTTGATTGGTCAC...........................................................................................................................................................	20	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0
...........................................................................ACGTACTGTTGATTGGTCACT..........................................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
......................................................................GCAGAACGTACTGTTGATTGGTCACG..........................................................................................................................................................	26	2	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACG.......................................................................................................................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
............................................................................................CACTCCGCTGGAGGAGCTTCGGTCC.....................................................................................................................................	25	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
....................................................CAGTTTCGGCGGAGAACCG...................................................................................................................................................................................	19	1	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
.....................................................................CACAGAACGTACTGTTGATTGGTCACTC.........................................................................................................................................................	28	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGCTGGC.................................................................................................................................................................................................................................	25	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GTCCATCTGCAGATGCTTCGTGAGGATT.............................................................................................................	28	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................CTTAGAACTGGGACGGAC......	18	2	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................ACAGAACGTACTGTTGATTGGT..............................................................................................................................................................	22	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0
................................TGGATTAAGAAGAAAATAGACA....................................................................................................................................................................................................	22	3	5	1.20	6	0	0	0	0	0	0	6	0	0	0	0	0
............................................................................................................................................................................................GATCCATGGGTTGTCCAG............................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................ACAGAACTTACTGTTGATTGGTCACG..........................................................................................................................................................	26	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CGAGCCTTTGAACTGGGACG.........	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.................CGGCTGGCTCTCAAATGGATTAAGC................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................CCACAGAACGTACTGTTGATT.................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................TCGGCGGAGAACCACAGAA..............................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................ATGCTCTGGATCCATGGGTTGT................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CTGGATCCATGGGTTGTCC..............................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCAAGGGGACGAGCCTTTGAACTGGGAC..........	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................GATTGGTCACTCCGCTGGAGGAGCTTC..........................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTCGGTCCATCTGCAGATGCTTCGTG...................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................CACAGAACGTACTGTTGATTGGTCAC...........................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................CGTACTGTTGATTGGTCACT..........................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCAAGGGGACGAGCCTTTGAACT...............	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACTGTTGATTGGTCACTCC........................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................TTCGTGAGGATTTCGGTCAG.....................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGGAATGCTCTGGATCCAT.......................................................	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................ACAGAACGTACTGTTGATTGGTCACC..........................................................................................................................................................	26	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAGAACGTACTGTTGATTGGTCACTCCG.......................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................ATCTGCAGATGCTTCGTGAGG................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATGGGTTGTCCAGAAGGGCGCAAGGGGA.............................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TGATTGGTCACTCCGCTGGAGGAGCTTC..........................................................................................................................................	28	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGGTCAC...........................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
....ACTGAAAGATCAACGGCT....................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGCC....................................................................................................................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGGTCACTCCGC......................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................GAACGTACTGTTGATTGGTCACT..........................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
............................CAAATGGATTAAGCAGAATATAGC......................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCGAGCCTTTGAACTGGGACGCACC.....	25	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AACGTACTGTTGATTGGTCACT..........................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................TGATTGGTCACTCCGCTGGG..................................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................CGGTCCATCTGCAGATGCT........................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGG...............................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TTGAACTGGGACGCAACGTGG.	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GGGACGAGCCTTTGAACTGG.............	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................ACGAGCCTTTGAACTGGGACGCACC.....	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................CTTTGAACTGGGACGCAACGTGGG	24	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...................................................CCAGTTTCGGCGGAGAACCACAGAG..............................................................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................GCAGAACGTACTGTTGATTGGTCACC..........................................................................................................................................................	26	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GGTCACTCCGCTGGAGGAGCTTCGGTCC.....................................................................................................................................	28	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................ATCTGCAGATGCTTCGTGAAGAT..............................................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGCTGGCTC...............................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGCTGGCT................................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................GAACCACAGAACGTACTGT......................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................AGGAGCTTCGGTCCATCTGCAGATGCTT.......................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................ACAGAACGTACTGTTGATTG................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................GAACGTACTGTTGATTGGTC.............................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..........................CTCAAATGGATTAAGCAGAATATAGCCA....................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................CTTTGAACTGGGACGCAACG....	20	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................CTCGTTTAGCGGGAATGCTCTGGATCC.........................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................CTTTGAACTGGGACGCAACGTGG.	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGGTCG............................................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.......GAAAGATCAACGGCTGGC.................................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.....................................TAAGCAGAATATAGCCAGTTTCG..............................................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TCCAGAAGGGCGCAAGGGG..............................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................AGTTTCGGCGGAGAACCACATAGCC............................................................................................................................................................................	25	3	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................GTTGATTGGTCACTCCGCTGGAGGAGC.............................................................................................................................................	27	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
.....CTGAAAGATCAACGGCTGGCTCT..............................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GCCTTTGAACTGGGACGCACC.....	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................GCAGAACGTACTGTTGATTGGTCAC...........................................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................ACAACGTACTGTTGATTGGTC.............................................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AGGGGACGAGCCTTTGAACTGG.............	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TCTGCAGATGCTTCGTGAGGAT..............................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GTTTAGCGGGAATGCTCTGGATCCATG......................................................	27	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................AGTTTCGGCGGAGAACCACT.................................................................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................ACCACAGAACGTACTGTTGATTG................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................CGTACTGTTGATTGGTCACTCCG.......................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGCTGGCTCT..............................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TCCAGAAGGGCGCAAGGG...............................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................TCCATCTGCAGATGCTTC......................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................CTGTTGATTGGTCACTCC........................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GAGCCTTTGAACTGGGACGCAACGT...	25	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................GCAGAACGTACTGTTGATTGGT..............................................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................GCTTCGGTCCATCTGCAGATGCTT.......................................................................................................................	24	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................AATGCTCTGGATCCATGGG....................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................CAGAATATAGCCAGTTTCGGCGGAGAACC....................................................................................................................................................................................	29	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.................................................AGCTAGTTTCGGCGGAGAACC....................................................................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGGTC.............................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...GACTGAAAGACCAACGGCTG...................................................................................................................................................................................................................................	20	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GACGAGCCTTTGAACTGGGACGCACC.....	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.............................................ATATAGCCAGTTTCGGCGGAGA.......................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
...................................................CCAGTTTCGGCGGAGAACC....................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AGGGGACGAGCCTTTGAACTGGGAC..........	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTCGGTCCATCTGCAGAT...........................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGGTCAGCTGGCCAAGGCGGCATTCTC.................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................AGCCAGTTTCGGCGGAGAACCAC..................................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................CCATCTGCAGATGCTTCGTGAAGATTT............................................................................................................	27	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GGCGCAAGGGGACGAGCCTTTGAACT...............	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TGCAGATGCTTCGTGAGGAC..............................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................GCAGATGCTTCGTGAGGATTTCG..........................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TCTGGATCCACGGGTTGTCC..............................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................GATGCTTCGTGAGGATTTCGGTCAGCT...................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGCTGGGT................................................................................................................................................................................................................................	26	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................CTCCGCTGGAGGAGCTTCGGT.......................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTCGGTCCATCTGCAGATGCTTC......................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GGATTTCGGTCAGCTGGC................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TTCGGTCAGCTGGCCAAGGCGGCATT....................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTTTCGGCGGAGAACCACAGAA..............................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................GAACCACAGAACGTACTGTTGATTG................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..........................CTCAAATGGATTAAGCAGAATATAGCC.....................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.CGGACTGAAAGATCAACGGCTGGCT................................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................GATGCTTCGTGAGGATTTCGGTC.......................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CGTGAGGATTTCGGTCAGCC...................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACTGTTGATTGGTCACTCCG.......................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................GCTTCGGTCCATCTGCAGATGCTTC......................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GACGAGCCTTTGAACTGGGACGCAC......	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACTGTTGATTGGTCACTC.........................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................GCAGAACGTACTGTTGATTGGTC.............................................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.CGGACTGAAAGATCAACGGCC....................................................................................................................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CGAGCCTTTGAACTGGGACGCACCG....	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................GCAGAATATAGCCAGTTTCGGCGGAGAAC.....................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GAGCCTTTGAACTGGGACGCAACGTGG.	27	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...GACTGAAAGATCAACGGCT....................................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GATGCTCTGGATCCATGGG....................................................	19	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAGAACGTACTGTTGATTGGTCACC..........................................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AATGCTCTGGATCCATGGGTTGTCC..............................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................GTCAGCTGGTCAATGCGGC.......................................................................................	19	2	3	0.67	2	0	0	0	0	2	0	0	0	0	0	0	0
..............................................................................................................TCGGTCCATCTGCAGATGC.........................................................................................................................	19	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GAGCTACCGTCCATCTGC...............................................................................................................................	18	2	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0
................................TGGATTAAGAAGAAAATAGAC.....................................................................................................................................................................................................	21	3	9	0.22	2	0	0	0	0	0	0	2	0	0	0	0	0
..............................................................................................................................................CAGTCAGCTGGTCAATGCGGC.......................................................................................	21	3	7	0.14	1	0	0	0	0	1	0	0	0	0	0	0	0
..........................CTCAGATGGATTGAGCAG..............................................................................................................................................................................................................	18	2	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0
...GACTGCAAGATCGACGG......................................................................................................................................................................................................................................	17	2	16	0.13	2	0	0	0	0	0	0	0	0	1	0	1	0
......TGGAAGGTGAACGGCTGGCT................................................................................................................................................................................................................................	20	3	11	0.09	1	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................GCCTTTGCACTGGGA...........	15	1	13	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................TCAGCTGGTCAATGCGGC.......................................................................................	18	2	14	0.07	1	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................GCTTCGTGAGAATTGTGGT........................................................................................................	19	3	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................CTTAGAACTGGTACGTAC......	18	3	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0

TGCCTGACTTTCTAGTTGCCGACCGAGAGTTTACCTAATTCGTCTTATATCGGTCAAAGCCGCCTCTTGGTGTCTTGCATGACAACTAACCAGTGAGGCGACCTCCTCGAAGCCAGGTAGACGTCTACGAAGCACTCCTAAAGCCAGTCGACCGGTTCCGCCGTAAGAGCAAATCGCCCTTACGAGACCTAGGTACCCAACAGGTCTTCCCGCGTTCCCCTGCTCGGAAACTTGACCCTGCGTGGCACCC *************************************************************************************..........(((((..(((((((....(((((.(((((((((...((((....)))).....))))).))))..))))))))))))))))).********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
.........................................................ACCCGCGTCTTGGTGTCTTGCAC..........................................................................................................................................................................	23	3	1	1.00	1	1	0	0	0
.........................AGGGTTTACCTAATTTGT...............................................................................................................................................................................................................	18	2	10	0.20	2	0	2	0	0
.......................................................................................................................................................CCGATCCCGCCATAAGAG.................................................................................	18	3	20	0.05	1	0	0	0	1
.........................AGGGTTTACCTAATTTG................................................................................................................................................................................................................	17	2	20	0.05	1	0	1	0	0
....TGACTTTCTAGTTGT.......................................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	3l:11881375-11881624 +	dsi_10452	ACGGACTGAAAGATCAACGGCTGGCTCTCAAATGGATTAAGCAGAATATAGCCAGTTTCGGCGGAGAACCACAGAACGTACTGTTGATTGGTCACTCCGCTGGAGGAGCTTCGGTCCATCTGCAGATGCTTCGTGAGGATTTCGGTCAGCTGGCCAAGGCGGCATTCTCGTTTAGCGGGAATGCTCTGGATCCATGGGTTGTCCAG------AAGGGCGCAAGGGGACGAGCCTTTGAACTGGGACGCACCGTGGG
droSec2	scaffold_0:4367342-4367591 +		ATGGACTGAAAGATCAACGGCTGGCTCTCAAATGGATTAAGCAGAATATAGCCAGTTTTGGTGGAGAACCACAGAACGTACTGTTGATTGGTGCCTCCGCTGGAGGAGCTTCGGTCCATCTGCAGATGCTTCGTGAGGATTTCGGTCAGCTGGCGAAGGCGGCATTCTCGTTTAGCGGAAATGCTCTGGATCCATGGGTTGTCCAG------AATGGCGCAAGAGGACGAGCCTTTGAACTGGGACGCACCGTGGG
dm3	chr3L:12182488-12182737 +		ATGGACTGAAAGATCAACGGCTGGCTCTCAAATGGATTAAGCAGAATATAGCCAGTTTTGGTGGAGAACCGCAGAACGTACTGTTGGTTGGTCACTCCGCTGGAGGAGCTTCGGTCCATCTGCAGATGCTTCGTGAAGATTTCGGCCAGCTGGCCAGGGCGGCATTCTCGTTTAGTGGAAATGCTCTAGATCCATGGGTTATACAG------AAGGGAGCAAGAGGACGAGCCTTTGAACTGGGACGCAACGTGGG
droEre2	scaffold_4784:12170484-12170733 +		ATGGCCTGAAAGATCAACGGCTGGCTCTGGAATGGATTAGACAGAATATAGCCAGCTTTGGAGGAGAACCAGAGAACGTCGTGTTGGTTGGTCACTCGGCTGGAGGAGCTTCGGTCCATCTGCAGATGCTTCGTGAGGATTTCGGCCAGCTGGCCAAGGCGGCCATCTCGTTTAGCGGAAATGCTCTGGATCCCTGGGTTGTCCAG------GAGGGCGGACGAGGACGAGCCTTTGAACTGGGTCGCATCGTGGG
droYak3	3L:12230042-12230291 +		ACGGACTGAAAGATCAACGGCTGGCTCTCAAATGGATTAGGCAGAATATAGCCAGCTTTGGAGGAGAGCCGGAGAACATTGTGTTGATTGGTCACTCCGCTGGAGGAGCTTCGGTCCATCTGCAGATGCTTCGCGAGGATTTCGGCAAACTGGCCAAGGCGGCGATCTCGTTTAGCGGCAATGCTCTGGATCCATGGGTTGTCCAG------GAGGGCGGACGAGGACGAGCCTTTGAACTGGGTCGCATTGTGGG
droEug1	scf7180000409466:4271197-4271446 +		ATGGACTGAAAGATCAACGTCTAGCCCTGCAGTGGATTAAGAAAAACATAGCGTGCTTTGGTGGAGAACCGGAGAACATTCTGCTCATTGGACATTCAGCTGGAGGAGCTTCAGTTCATCTGCAGATGCTTCGCGAAGATTTTGGTCAGTTGGCCAAGGCGGCGATCTCTTTCAGTGGAAATGCTTTAGATCCTTGGGTTGTCCAG------CAGGGTAGCCGTGGACGAGCCTTTGAACTTGGACGCATTTTGGG
droBia1	scf7180000302428:4438061-4438316 +		ATGGTCTGAAGGATCAGCGCCTGGCTCTGCAGTGGATCAAGCAGAACATAGCCAGTTTTGGCGGAGAGCCGGAGAACATCCTGGTCGTGGGACACTCCGCCGGTGGAGCTTCGGTTCATCTGCAGATGCTTCGTGAAGATTTCTCCCAGTTGGCCAAGGCGGCGATCTCGTTCAGCGGCAATGCCCTGGATCCTTGGGTCATGCAGCCGGAGCAGGGTGCCCGGGGACGAGCCTTCGAGCTGGGTCGCATTGTGGG
droTak1	scf7180000415254:414634-414883 -		ATGGACTGAAAGATCAACGCCTGGCTCTGCAATGGATCAAGCAAAATATAGCCAGTTTTGGTGGTGAGCCGGAGAATATTCTACTTATTGGTCACTCTGCTGGAGGAGCTTCGGTGCATCTACAGCTGCTGCGGGAAGATTTCGCCCAGTTGGCCAAGGCGGCGATCTCGTTTAGCGGAAATGCCCTGGATCCTTGGGTTGTTCAG------CAGGGAGCTCGAGGCAGAGCCTTCGAACTGGGTCGCATTGTGGG
droEle1	scf7180000491255:526836-527085 +		ACGGACTGAAAGATCAACGACTGGCTCTGCAATGGATTAAGGCAAACATAGCCCGCTTTGGTGGAGAGCCAGAGAACATCCTGCTCGTGGGTCACTCCGCCGGAGGAGCATCGGTTCATTTGCAGCTCCTACGTGAAGACTTCGGCAAGCTGGCCAAGGCAGCGATCTCATTCAGCGGCAATGCCTTGGATCCTTGGGTTGTCCAG------AAGGGAGGACGAGGCCGAGCACTTGAACTGGGGCGCATTGTGGG
droRho1	scf7180000780380:299-548 +		ACGGACTGAAAGACCAACGTTTGGCTCTGCAATGGATCAAGCAGCACATAGCATGTTTTGGTGGCGAACCGGAGAACATCCTGCTCGTGGGTCACTCCGCTGGAGGAGCATCGGTTCATCTTCAGATGCTACGCGAAGATTTCAGCCAGTTGGCCAAGGCGGCGATCTCCTTCAGCGGCAATGCCCTCGATCCTTGGGTTGTCCTG------CAGGGAGGACGAGGACGTGCCTTTGAGCTGGGACGAATCGTGGG
droFic1	scf7180000453839:888951-889200 -		ATGGACTCAAGGACCAACGCCTGGCTCTCCAATGGATCAAGCAGAATATAGCCAGCTTTGGTGGAGAACCGGAGAACATTCTGCTGGTGGGTCACTCCGCCGGCGGAGCTTCGGTTCACCTGCAACTCCTGCGAGAGGATTTCAGCCAGTTGGCCCGGGCAGCGATCTCGTTTAGTGGAAATGCCCTCGATCCTTGGGTTGTCCAA------AGTGGAGCACGAGGACGAGCCTTTGAGCTGGGACGCATTGTTGG
droKik1	scf7180000302391:328423-328672 +		ATGGCCTTAAAGATCAGCGTCTGGCTTTGCAATGGATCCGGGAAAACATTGCAAACTTTGGTGGAGAACCAAAGAATATACTGGTCATAGGACACTCCGCTGGAGGAGCCTCTGTCCATTTGCAACTGCTCCGTGAGGATTTTGGCAAGCTGGCCAAGGCAGGGATCTCCTTCAGCGGCAATGCCCTCGATCCCTGGGTTGTCCAG------AAAGGTAGCCGCGGAAGAGCCTTTGAACTGGGCCGCATTGTGGG
droAna3	scaffold_13337:1459980-1460229 -		ATGGCCTAAAAGATCAGCGACTGGCCCTCCAGTGGATCAGGAAAAATATAGCTAGTTTTGGTGGAGAGCCTGAGAACATTGTGCTGATTGGTCACTCCGCTGGTGCTGCCCTTGTTCATCTGCAACTCCTCCAGGAGGATTTCGGTCAGTTGGCCAGGTCTGCTATCTCCTTTAGTGGCAACGCTCTGGATCCCTGGGTAATCCAG------AAAGGAGCTCGTGAACAAGCTTTAAAACTAGGTCGCATTGTGGG
droBip1	scf7180000396544:623111-623360 +		ACGGCCTCAAAGATCAGCGACTGGCCCTCCAATGGATCCGGAAAAATATAGATAGTTTTGGTGGAGAGCCGGAGAACGTTCTGTTGGTTGGTCACTCCGCTGGTGCTGCTCTTGTTCACCTGCAACTGCTGCAGGAGGATTTCGACCAGTTGGCCAGATCAGCCATATCCTTTAGTGGCAACGCTCTAGATCCCTGGGCAATACAG------AAAGGAGCCCATGAACGGGCTTTCGAACTAGGTCGCATTCTGGA
dp5	XR_group6:2521200-2521449 +		TTGGACTGAAGGATCAGCGCCTGGCTCTGCTCTGGATCAAGCAGAACATTGCCAGCTTCGGTGGGGAACCAGAGAACATTCTAGTGGTAGGTCACTCCGCGGGCGGGGCATCCGTTCATCTGCAGATGCTACGTGAGGACTTCAGCAAGTTGGCTAAAGCAGCAATTTCATTTAGTGGCAATGCTCTGGACCCCTGGGTGATCCAG------CAAGGATTACGTGGACGGGCCTTTGAGCTGGGCCGCATTGTGGG
droPer2	scaffold_9:813440-813689 +		TTGGACTGAAGGATCAGCGCCTGGCTCTGCTCTGGATCAAGCAGAACATTGCCAGCTTCGGTGGGGAACCAGAGAACATTCTAGTGGTAGGTCACTCCGCGGGCGGGGCATCCGTTCATCTGCAGATGCTACGTGAGGACTTCAGCAAGGTGGCTAAAGCAGCAATTTCATTTAGTGGCAATTCTCTGGACCCCTGGGTGATCCAG------CAAGGATTACGTGGACGGGCCTTTGAGCTGGGCCGCATTGTGGG
droWil2	scf2_1100000004762:5116746-5116995 -		ATGGACTGAAGGATCAACACTTGGCTCTCAAATGGATTAAGCAGAACATAGTTCATTTTGGTGGCGAGCCAGAAAATGTATTAGTGCTGGGTCATTCGGCTGGAGGAGCCGCGGTTCATTTGCAAATGCTGAGGGAGGATTTCCAGCAAGTGGCCAAGGTGGCCATGTCCTTTAGTGGCACCGCTCTGGACCCTTGGGTGATCCTA------AAAGGCAGCCGTGGACGTGCCTTCGAACTGGGACGATATTTGGG
droVir3	scaffold_12855:9350794-9351043 -		TTGGACTGAAGGATCAGCGCTTGGCTCTGCGCTGGATCAAACAAAACATTGCCCGCTTCGGTGGAGATCCGGAAAATATACTCGTGCTGGGTCACTCAGCTGGCGGTGCCTCCGTGCATCTGCAGCTACTGCAAGAGGAGTTTAGCCAGCTGGCAAAGACGGCTTTTTCAATTAGTGGAAATGCACTCGATCCATGGGTGGTGCAG------CCAGGTGCACGTCGACGCGCCTTCGATTTGGGCCGCATTGTGGG
droMoj3	scaffold_6540:24433497-24433746 -		TTGGACTTAAGGATCAGCGCTTGGCTCTGCGCTGGATCAAGCAAAACATTGCTCGCTTTGATGGTGAGCCAGAGAATATTCTTGTCCTTGGTCACTCAGCTGGCGGTGCTTCGGTACACCTGCAGATGCTGCAGGAGGATTTCAGCCAATTGGCAAAGGTGGCTGTGTCACTCAGTGGAAATGCCCTGGATCCCTGGGTGGTGCAA------CAAGGAGCACGTCGACGCGCCCTCGAAATGGGTCGCATTGTGGG
droGri2	scaffold_14830:1810008-1810257 -		ATGGATTAAAAGATCAGCGACTGGCTTTGCAATGGATAAAGGAAAACATTGCCTCCTTCGGTGGGGAGCCTGAAAATATAATGGTATTTGGTTACTCTGCAGGAGCTGCCGCTGTCCACCTTCAAATGCTGCAAGAAGACTTTGAGGACTTGGCCAAAGTGGCAGTCACCATTAGTGGAAATGCACTGAATCCTTGGGTTGTTCAA------GAAGGTGGACGTCGTCGTGCATTTGAGATGGGTCGCATTGTAGG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ACGGACTGAAAGATCAACGGCTGGCTCTCAAATGGATTAAGCAGAATATAGCCAGTTTCGGCGGAGAACCACAGAACGTACTGTTGATTGGTCACTCCGCTGGAGGAGCTTCGGTCCATCTGCAGATGCTTCGTGAGGATTTCGGTCAGCTGGCCAAGGCGGCATTCTCGTTTAGCGGGAATGCTCTGGATCCATGGGTTGTCCAG------AAGGGCGCAAGGGGACGAGCCTTTGAACTGGGACGCACCGTGGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................ACAGAACGTACTGTTGATTGGTCACT................................................................................................................................................................	26	1	18.00	18	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAGAACGTACTGTTGATTGGTCACT................................................................................................................................................................	25	1	15.00	15	0	11	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................ACAGAACGTACTGTTGATTGGTCACTCC..............................................................................................................................................................	28	1	12.00	12	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGCT..........................................................................................................................................................................................................................................	22	1	9.00	9	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................ACAGAACGTACTGTTGATTGGTCAC.................................................................................................................................................................	25	1	7.00	7	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGGTCACT................................................................................................................................................................	24	1	7.00	7	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAGAACGTACTGTTGATTGGTCACTCC..............................................................................................................................................................	27	1	6.00	6	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................ACAGAACGTACTGTTGATTGGTCACTC...............................................................................................................................................................	27	1	6.00	6	0	5	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
ACGGACTGAAAGATCAACGGC...........................................................................................................................................................................................................................................	21	1	6.00	6	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TCGGTCAGCTGGCCAAGGCGGC.............................................................................................	22	1	5.00	5	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................GAACGTACTGTTGATTGGTCACTCC..............................................................................................................................................................	25	1	4.00	4	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..........................................................................AACGTACTGTTGATTGGTCACTCC..............................................................................................................................................................	24	1	3.00	3	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.CGGACTGAAAGATCAACGGCT..........................................................................................................................................................................................................................................	21	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAGAACGTACTGTTGATTGGTCACTC...............................................................................................................................................................	26	1	3.00	3	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGGTCACTC...............................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTTTCGGCGGAGAACCACAGAAC...................................................................................................................................................................................	24	1	3.00	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAGAACGTACTGTTGATTGGTCAC.................................................................................................................................................................	24	1	3.00	3	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................GAACGTACTGTTGATTGGTCACTC...............................................................................................................................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................ATATAGCCAGTTTCGGCGGAGAACC..........................................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ATAGCCAGTTTCGGCGGAGAACC..........................................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GACTGAAAGATCAACGGCTGGCTCT....................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................CAGTTTCGGCGGAGAACC..........................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GCAAGGGGACGAGCCTTTGAACTGGGA...........	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GGCTCTCAAATGGATTAAGCAGAATATAG.............................................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...........................................................................ACGTACTGTTGATTGGTCAC.................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...........................................................................ACGTACTGTTGATTGGTCACT................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACG.............................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................CACTCCGCTGGAGGAGCTTCGGTCC...........................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................CAGTTTCGGCGGAGAACCG.........................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................CACAGAACGTACTGTTGATTGGTCACTC...............................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGCTGGC.......................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GTCCATCTGCAGATGCTTCGTGAGGATT...................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................ACAGAACGTACTGTTGATTGGT....................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
............................................................................................................................................................................................GATCCATGGGTTGTCCAG------............................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CGAGCCTTTGAACTGGGACG.........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................CGGCTGGCTCTCAAATGGATTAAGC......................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................CCACAGAACGTACTGTTGATT.......................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TCGGCGGAGAACCACAGAA....................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................ATGCTCTGGATCCATGGGTTGT......................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CTGGATCCATGGGTTGTCC....................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GCAAGGGGACGAGCCTTTGAACTGGGAC..........	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................GATTGGTCACTCCGCTGGAGGAGCTTC................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTCGGTCCATCTGCAGATGCTTCGTG.........................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................CACAGAACGTACTGTTGATTGGTCAC.................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CGTACTGTTGATTGGTCACT................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GCAAGGGGACGAGCCTTTGAACT...............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACTGTTGATTGGTCACTCC..............................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TTCGTGAGGATTTCGGTCAG...........................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGGAATGCTCTGGATCCAT.............................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................ACAGAACGTACTGTTGATTGGTCACC................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAGAACGTACTGTTGATTGGTCACTCCG.............................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................ATCTGCAGATGCTTCGTGAGG......................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATGGGTTGTCCAG------AAGGGCGCAAGGGGA.............................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TGATTGGTCACTCCGCTGGAGGAGCTTC................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGGTCAC.................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ACTGAAAGATCAACGGCT..........................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGCC..........................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGGTCACTCCGC............................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................GAACGTACTGTTGATTGGTCACT................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CAAATGGATTAAGCAGAATATAGC............................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AACGTACTGTTGATTGGTCACT................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................TGATTGGTCACTCCGCTGGG........................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................CGGTCCATCTGCAGATGCT..............................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGG.....................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GGGACGAGCCTTTGAACTGG.............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ACGAGCCTTTGAACTGGGACGCACC.....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CCAGTTTCGGCGGAGAACCACAGAG....................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GGTCACTCCGCTGGAGGAGCTTCGGTCC...........................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGCTGGCTC.....................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGCTGGCT......................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................GAACCACAGAACGTACTGT............................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................AGGAGCTTCGGTCCATCTGCAGATGCTT.............................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................ACAGAACGTACTGTTGATTG......................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................GAACGTACTGTTGATTGGTC...................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CTCAAATGGATTAAGCAGAATATAGCCA..........................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................CTCGTTTAGCGGGAATGCTCTGGATCC...............................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGGTCG..................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GAAAGATCAACGGCTGGC.......................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TAAGCAGAATATAGCCAGTTTCG....................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TCCAG------AAGGGCGCAAGGGG..............................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................GTTGATTGGTCACTCCGCTGGAGGAGC...................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CTGAAAGATCAACGGCTGGCTCT....................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GCCTTTGAACTGGGACGCACC.....	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AGGGGACGAGCCTTTGAACTGG.............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TCTGCAGATGCTTCGTGAGGAT....................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GTTTAGCGGGAATGCTCTGGATCCATG............................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTTTCGGCGGAGAACCACT.......................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................ACCACAGAACGTACTGTTGATTG......................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CGTACTGTTGATTGGTCACTCCG.............................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACGGACTGAAAGATCAACGGCTGGCTCT....................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TCCAG------AAGGGCGCAAGGG...............................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TCCATCTGCAGATGCTTC............................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CTGTTGATTGGTCACTCC..............................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................GCTTCGGTCCATCTGCAGATGCTT.............................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AATGCTCTGGATCCATGGG..........................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................CAGAATATAGCCAGTTTCGGCGGAGAACC..........................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGAACGTACTGTTGATTGGTC...................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GACGAGCCTTTGAACTGGGACGCACC.....	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................ATATAGCCAGTTTCGGCGGAGA.............................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CCAGTTTCGGCGGAGAACC..........................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AGGGGACGAGCCTTTGAACTGGGAC..........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTCGGTCCATCTGCAGAT.................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGGTCAGCTGGCCAAGGCGGCATTCTC.......................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................AGCCAGTTTCGGCGGAGAACCAC........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GGCGCAAGGGGACGAGCCTTTGAACT...............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TGCAGATGCTTCGTGAGGAC....................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................GCAGATGCTTCGTGAGGATTTCG................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................GATGCTTCGTGAGGATTTCGGTCAGCT.........................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................CTCCGCTGGAGGAGCTTCGGT.............................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTCGGTCCATCTGCAGATGCTTC............................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GGATTTCGGTCAGCTGGC......................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TTCGGTCAGCTGGCCAAGGCGGCATT..........................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTTTCGGCGGAGAACCACAGAA....................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................GAACCACAGAACGTACTGTTGATTG......................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................CTCAAATGGATTAAGCAGAATATAGCC...........................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CGGACTGAAAGATCAACGGCTGGCT......................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................GATGCTTCGTGAGGATTTCGGTC.............................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CGTGAGGATTTCGGTCAGCC.........................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACTGTTGATTGGTCACTCCG.............................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................GCTTCGGTCCATCTGCAGATGCTTC............................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GACGAGCCTTTGAACTGGGACGCAC......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACTGTTGATTGGTCACTC...............................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CGGACTGAAAGATCAACGGCC..........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CGAGCCTTTGAACTGGGACGCACCG....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCAGAATATAGCCAGTTTCGGCGGAGAAC...........................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GACTGAAAGATCAACGGCT..........................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAGAACGTACTGTTGATTGGTCACC................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AATGCTCTGGATCCATGGGTTGTCC....................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TCGGTCCATCTGCAGATGC...............................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATGGACTGAAAGATCAACGGCTGGCTCTCAAATGGATTAAGCAGAATATAGCCAGTTTTGGTGGAGAACCACAGAACGTACTGTTGATTGGTGCCTCCGCTGGAGGAGCTTCGGTCCATCTGCAGATGCTTCGTGAGGATTTCGGTCAGCTGGCGAAGGCGGCATTCTCGTTTAGCGGAAATGCTCTGGATCCATGGGTTGTCCAG------AATGGCGCAAGAGGACGAGCCTTTGAACTGGGACGCACCGTGGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................GCAGATGCTTCGTGAGGAT....................................................................................................................	19	1	1.00	1	0	0	0	1
.............................................................................GTACTGTTGATTGGTGCCTCC..............................................................................................................................................................	21	1	1.00	1	1	0	0	0
..................................................................................................GCTGGAGGAGCTTCGGTCCATC........................................................................................................................................	22	1	1.00	1	0	0	0	1
.....CTGAAAGATCAACGGCTGGCT......................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.................................................................................................................................................................................GAAATGCTCTGGATCCATGGGTTGTC.....................................................	26	1	1.00	1	0	0	1	0
......................................................................ACAGAACGTACTGTTGATT.......................................................................................................................................................................	19	1	1.00	1	0	0	0	1
...............................................................................................................................................GGTCAGCTGGCGAAGGCGG..............................................................................................	19	1	1.00	1	0	0	0	1
...............................................................................................................CGGTCCATCTGCAGATGC...............................................................................................................................	18	2	0.50	1	1	0	0	0

dm3

ATGGACTGAAAGATCAACGGCTGGCTCTCAAATGGATTAAGCAGAATATAGCCAGTTTTGGTGGAGAACCGCAGAACGTACTGTTGGTTGGTCACTCCGCTGGAGGAGCTTCGGTCCATCTGCAGATGCTTCGTGAAGATTTCGGCCAGCTGGCCAGGGCGGCATTCTCGTTTAGTGGAAATGCTCTAGATCCATGGGTTATACAG------AAGGGAGCAAGAGGACGAGCCTTTGAACTGGGACGCAACGTGGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................................................................................................................CGAGCCTTTGAACTGGGACGCG.......	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................AGAACCGCAGAACGTACT..............................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................GTTGGTTGGTCACTCCGCTGGAG.......................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATGGGTTATACAG------AAGGGAGCA...................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AGAGGACGAGCCTTTGAACTGGGA...........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........AGATCAACGGCTGGCTCTCAATC...............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......TGAAAGATCAACGGCTGGC.......................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................GCAGAACGTACTGTTGGTTGGTC...................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TTTGAACTGGGACGCAA......	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................GGTCCATCTGCAGATGCTTC............................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................ATGCTTCGTGAAGATTTCG................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................AGCCAGTTTTGGTGGAGAACCGCAG......................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GGAGCAAGAGGACGAGCC.......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................ATCTGCAGATGCTTCGTGAAGA.....................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATGGCCTGAAAGATCAACGGCTGGCTCTGGAATGGATTAGACAGAATATAGCCAGCTTTGGAGGAGAACCAGAGAACGTCGTGTTGGTTGGTCACTCGGCTGGAGGAGCTTCGGTCCATCTGCAGATGCTTCGTGAGGATTTCGGCCAGCTGGCCAAGGCGGCCATCTCGTTTAGCGGAAATGCTCTGGATCCCTGGGTTGTCCAG------GAGGGCGGACGAGGACGAGCCTTTGAACTGGGTCGCATCGTGGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................GTCGTGTTGGTTGGTCACTCGGCTGGAGGA.....................................................................................................................................................	30	1	2.00	2	0	0	0	0	0	0	2
.....................................................................................................................ATCTGCAGATGCTTCGTGAGGATT...................................................................................................................	24	1	2.00	2	0	0	0	0	1	1	0
.......................................................................................................................CTGCAGATGCTTCGTGAGGATT...................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................GCTGGAGGAGCTTCGGTCCAT.........................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................ATCTGCAGATGCTTCGTGAGGATTTC.................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................CTGCAGATGCTTCGTGAGGAT....................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................CAG------GAGGGCGGACGAGGACGAGC........................	23	1	1.00	1	0	0	0	0	0	1	0
....................................................CAGCTTTGGAGGAGAACCAGAG......................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.................................................................GAACCAGAGAACGTCGTGTTGGTT.......................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................CCAG------GAGGGCGGACGAGGACGAGC........................	24	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................TGGGTTGTCCAG------GAGGGCGG....................................	20	1	1.00	1	0	0	0	0	1	0	0
............................................................GAGGAGAACCAGAGAACGTC................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.......................................................................GAGAACGTCGTGTTGGTTGGT....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................ATCTGCAGATGCTTCGTG.........................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................ATCTGCAGATGCTTCGTGA........................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.............................................ATATAGCCAGCTTTGGAGGAGAACCAGA.......................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................TCCATCTGCAGATGCTTCGTGAG.......................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0
...................................................................ACCAGAGAACGTCGTGTT...........................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................ATCTGCAGATGCTTCGTGAGG......................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................CTTCGGTCCATCTGCAGATGCTTCGT..........................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
..............CAACGGCTGGCTCTGGAATG..............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................GGTCCATCTGCAGATGCTTCG...........................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
......................................................GCTTTGGAGGAGAACCAGA.......................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...............................................ATAGCCAGCTTTGGAGGAGAACCAGA.......................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.....................................................AGCTTTGGAGGAGAACCAGA.......................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
................................TGGATTAGACAGAATATAGCCA..........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
......................................................................................GTTGGTCACTCGGCTGGAGGAGC...................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
....................................................................................TGGTTGGTCACTCGGCTGGA........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................GGTCACTCGGCTGGAGGAGC...................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................CTCGTTTAGCGGAAATGCTCTGGATCC...............................................................	27	1	1.00	1	0	0	0	0	0	1	0
......................................................................................GTTGGTCACTCGGCTGGAGGAG....................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0

droYak3

ACGGACTGAAAGATCAACGGCTGGCTCTCAAATGGATTAGGCAGAATATAGCCAGCTTTGGAGGAGAGCCGGAGAACATTGTGTTGATTGGTCACTCCGCTGGAGGAGCTTCGGTCCATCTGCAGATGCTTCGCGAGGATTTCGGCAAACTGGCCAAGGCGGCGATCTCGTTTAGCGGCAATGCTCTGGATCCATGGGTTGTCCAG------GAGGGCGGACGAGGACGAGCCTTTGAACTGGGTCGCATTGTGGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................GATGCTTCGCGAGGATTTCGGCA.............................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................ATTGGTCACTCCGCTGGAGGAGC...................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................TAGCCAGCTTTGGAGGAGA.............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................GCTGGAGGAGCTTCGGTCC...........................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.CGGACTGAAAGATCAACGGCTGGC.......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................TTGGTCACTCCGCTGGAGGAGC...................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............CAACGGCTGGCTCTCAAATGG.............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................GTCACTCCGCTGGAGGAGCTTCGGTCC...........................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................CGAGGACGAGCCTTTGAACTGGGT...........	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TTTCGGCAAACTGGCCAAGGCGGC.............................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..........................................................................AACATTGTGTTGATTGGTC...................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................ATGGATTAGGCAGAATATAGC............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................GGCCAAGGCGGCGATCTCGTTTAGCGGCT............................................................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CCATGGGTTGTCCAG------GAGGGC......................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

ATGGACTGAAAGATCAACGTCTAGCCCTGCAGTGGATTAAGAAAAACATAGCGTGCTTTGGTGGAGAACCGGAGAACATTCTGCTCATTGGACATTCAGCTGGAGGAGCTTCAGTTCATCTGCAGATGCTTCGCGAAGATTTTGGTCAGTTGGCCAAGGCGGCGATCTCTTTCAGTGGAAATGCTTTAGATCCTTGGGTTGTCCAG------CAGGGTAGCCGTGGACGAGCCTTTGAACTTGGACGCATTTTGGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATGGTCTGAAGGATCAGCGCCTGGCTCTGCAGTGGATCAAGCAGAACATAGCCAGTTTTGGCGGAGAGCCGGAGAACATCCTGGTCGTGGGACACTCCGCCGGTGGAGCTTCGGTTCATCTGCAGATGCTTCGTGAAGATTTCTCCCAGTTGGCCAAGGCGGCGATCTCGTTCAGCGGCAATGCCCTGGATCCTTGGGTCATGCAGCCGGAGCAGGGTGCCCGGGGACGAGCCTTCGAGCTGGGTCGCATTGTGGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATGGACTGAAAGATCAACGCCTGGCTCTGCAATGGATCAAGCAAAATATAGCCAGTTTTGGTGGTGAGCCGGAGAATATTCTACTTATTGGTCACTCTGCTGGAGGAGCTTCGGTGCATCTACAGCTGCTGCGGGAAGATTTCGCCCAGTTGGCCAAGGCGGCGATCTCGTTTAGCGGAAATGCCCTGGATCCTTGGGTTGTTCAG------CAGGGAGCTCGAGGCAGAGCCTTCGAACTGGGTCGCATTGTGGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACGGACTGAAAGATCAACGACTGGCTCTGCAATGGATTAAGGCAAACATAGCCCGCTTTGGTGGAGAGCCAGAGAACATCCTGCTCGTGGGTCACTCCGCCGGAGGAGCATCGGTTCATTTGCAGCTCCTACGTGAAGACTTCGGCAAGCTGGCCAAGGCAGCGATCTCATTCAGCGGCAATGCCTTGGATCCTTGGGTTGTCCAG------AAGGGAGGACGAGGCCGAGCACTTGAACTGGGGCGCATTGTGGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACGGACTGAAAGACCAACGTTTGGCTCTGCAATGGATCAAGCAGCACATAGCATGTTTTGGTGGCGAACCGGAGAACATCCTGCTCGTGGGTCACTCCGCTGGAGGAGCATCGGTTCATCTTCAGATGCTACGCGAAGATTTCAGCCAGTTGGCCAAGGCGGCGATCTCCTTCAGCGGCAATGCCCTCGATCCTTGGGTTGTCCTG------CAGGGAGGACGAGGACGTGCCTTTGAGCTGGGACGAATCGTGGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATGGACTCAAGGACCAACGCCTGGCTCTCCAATGGATCAAGCAGAATATAGCCAGCTTTGGTGGAGAACCGGAGAACATTCTGCTGGTGGGTCACTCCGCCGGCGGAGCTTCGGTTCACCTGCAACTCCTGCGAGAGGATTTCAGCCAGTTGGCCCGGGCAGCGATCTCGTTTAGTGGAAATGCCCTCGATCCTTGGGTTGTCCAA------AGTGGAGCACGAGGACGAGCCTTTGAGCTGGGACGCATTGTTGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATGGCCTTAAAGATCAGCGTCTGGCTTTGCAATGGATCCGGGAAAACATTGCAAACTTTGGTGGAGAACCAAAGAATATACTGGTCATAGGACACTCCGCTGGAGGAGCCTCTGTCCATTTGCAACTGCTCCGTGAGGATTTTGGCAAGCTGGCCAAGGCAGGGATCTCCTTCAGCGGCAATGCCCTCGATCCCTGGGTTGTCCAG------AAAGGTAGCCGCGGAAGAGCCTTTGAACTGGGCCGCATTGTGGG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATGGCCTAAAAGATCAGCGACTGGCCCTCCAGTGGATCAGGAAAAATATAGCTAGTTTTGGTGGAGAGCCTGAGAACATTGTGCTGATTGGTCACTCCGCTGGTGCTGCCCTTGTTCATCTGCAACTCCTCCAGGAGGATTTCGGTCAGTTGGCCAGGTCTGCTATCTCCTTTAGTGGCAACGCTCTGGATCCCTGGGTAATCCAG------AAAGGAGCTCGTGAACAAGCTTTAAAACTAGGTCGCATTGTGGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

ACGGCCTCAAAGATCAGCGACTGGCCCTCCAATGGATCCGGAAAAATATAGATAGTTTTGGTGGAGAGCCGGAGAACGTTCTGTTGGTTGGTCACTCCGCTGGTGCTGCTCTTGTTCACCTGCAACTGCTGCAGGAGGATTTCGACCAGTTGGCCAGATCAGCCATATCCTTTAGTGGCAACGCTCTAGATCCCTGGGCAATACAG------AAAGGAGCCCATGAACGGGCTTTCGAACTAGGTCGCATTCTGGA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TTGGACTGAAGGATCAGCGCCTGGCTCTGCTCTGGATCAAGCAGAACATTGCCAGCTTCGGTGGGGAACCAGAGAACATTCTAGTGGTAGGTCACTCCGCGGGCGGGGCATCCGTTCATCTGCAGATGCTACGTGAGGACTTCAGCAAGTTGGCTAAAGCAGCAATTTCATTTAGTGGCAATGCTCTGGACCCCTGGGTGATCCAG------CAAGGATTACGTGGACGGGCCTTTGAGCTGGGCCGCATTGTGGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................ATTACGTGGACGGGCCTTTGAGCTGG.............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................................................................................................CGTGGACGGGCCTTTGAGCTGGGC...........	24	2	0.50	1	0	0	0	0	0	0	0	0	0	1

droPer2

TTGGACTGAAGGATCAGCGCCTGGCTCTGCTCTGGATCAAGCAGAACATTGCCAGCTTCGGTGGGGAACCAGAGAACATTCTAGTGGTAGGTCACTCCGCGGGCGGGGCATCCGTTCATCTGCAGATGCTACGTGAGGACTTCAGCAAGGTGGCTAAAGCAGCAATTTCATTTAGTGGCAATTCTCTGGACCCCTGGGTGATCCAG------CAAGGATTACGTGGACGGGCCTTTGAGCTGGGCCGCATTGTGGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..GGACTGAAGGATCAGCGCC...........................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	1

droWil2

ATGGACTGAAGGATCAACACTTGGCTCTCAAATGGATTAAGCAGAACATAGTTCATTTTGGTGGCGAGCCAGAAAATGTATTAGTGCTGGGTCATTCGGCTGGAGGAGCCGCGGTTCATTTGCAAATGCTGAGGGAGGATTTCCAGCAAGTGGCCAAGGTGGCCATGTCCTTTAGTGGCACCGCTCTGGACCCTTGGGTGATCCTA------AAAGGCAGCCGTGGACGTGCCTTCGAACTGGGACGATATTTGGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................GCACCGCTCTGGACCCTTGGGC.........................................................	22	1	1.00	1	1	0	0	0	0
...............................................................................ATTAGTGCTGGGTCATTCGGCTGG.........................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.....................................................................................GCTGGGTCATTCGGCTGGAGG......................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
.............TCAACACTTGGCTCTCAAAT...............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................GGCACCGCTCTGGACCCTTGGGTG........................................................	24	1	1.00	1	1	0	0	0	0

droVir3

TTGGACTGAAGGATCAGCGCTTGGCTCTGCGCTGGATCAAACAAAACATTGCCCGCTTCGGTGGAGATCCGGAAAATATACTCGTGCTGGGTCACTCAGCTGGCGGTGCCTCCGTGCATCTGCAGCTACTGCAAGAGGAGTTTAGCCAGCTGGCAAAGACGGCTTTTTCAATTAGTGGAAATGCACTCGATCCATGGGTGGTGCAG------CCAGGTGCACGTCGACGCGCCTTCGATTTGGGCCGCATTGTGGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................CTCCGTGCATCTGCAGCTA................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................ATCTGCAGCTACTGCAAGAGGA.....................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ATTGCCCGCTTCGGTGGAGAT............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AGGAGTTTAGCCAGCTGGCAA....................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................ATTGCCCGCTTCGGTGGAGATCCGG........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACTCGTGCTGGGTCACTCA..............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AGCTACTGCAAGAGGAGTTTAGCCAGCT.........................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................G------CCAGGTGCACGTCGACGCG.........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................GGCTTTTTCAATTAGTGGAAA...........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AAGAGGAGTTTAGCCAGCT.........................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GGCTCTGCGCTGGATCAAAC......................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TTGCCCGCTTCGGTGGAGATCCG.........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................CGGAAAATATACTCGTGCT........................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CTGAAGGATCAGCGCTTGG........................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTGGACTTAAGGATCAGCGCTTGGCTCTGCGCTGGATCAAGCAAAACATTGCTCGCTTTGATGGTGAGCCAGAGAATATTCTTGTCCTTGGTCACTCAGCTGGCGGTGCTTCGGTACACCTGCAGATGCTGCAGGAGGATTTCAGCCAATTGGCAAAGGTGGCTGTGTCACTCAGTGGAAATGCCCTGGATCCCTGGGTGGTGCAA------CAAGGAGCACGTCGACGCGCCCTCGAAATGGGTCGCATTGTGGG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

ATGGATTAAAAGATCAGCGACTGGCTTTGCAATGGATAAAGGAAAACATTGCCTCCTTCGGTGGGGAGCCTGAAAATATAATGGTATTTGGTTACTCTGCAGGAGCTGCCGCTGTCCACCTTCAAATGCTGCAAGAAGACTTTGAGGACTTGGCCAAAGTGGCAGTCACCATTAGTGGAAATGCACTGAATCCTTGGGTTGTTCAA------GAAGGTGGACGTCGTCGTGCATTTGAGATGGGTCGCATTGTAGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_10452

3l:11881425-11881574 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-25.7	-25.3	-25.1