ID:

dsi_10432

 Coordinate:

3l:23804893-23805042 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.1 -22.8 -22.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

ATGGTACATATATAAAAATATATGTCTATTTTTAAATTAAAATAGTATTTTATGTTTTTAAACGAGATTTGTAGTTTGCAAACTTTGAGTAAAACCATAATTCTATCTGCAAGGATATCAAAACAACACTCTGTTATGAGAACACGTTGAATACGTTTTGTTTTTTTTACAAAAATGTTTGCTTATACTGTTCTACTTAGGATAAACTATTTGATAATGACGTGTTGGAAAATATTGAGTCTCTGGATCC
**************************************************..............(((...(((....(((((((((..((((((.........(((((....)))))(((.((((......)))).)))((((((((.....))))...)))).))))))..))).))))))...)))...)))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M023
head
........................................................................................................................................................................................................................................TATTGAGTCTCGGGA... 15 1 4 36.75 147 146 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................TATTGAGTCTCGGGAA.. 16 2 20 2.15 43 43 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTGATAATGACGTGTTGGAAAATAT............... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................TTTGATAATGACGTGTTGGAAAATAT............... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ATATTGAGTCTCTGGATCC 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................TTATGAGAACACGTTGAATACGTT............................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................ACACAACCCTCTTTTATGAGAA............................................................................................................ 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................TGTTCTACTTAGGATAAACTATTTGA.................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................AACTATTTGATAATGACGT........................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................TGATAATGACGTGTTGGAAAATATT.............. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGTGATGATGACGTATTGGAAAA.................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TATTGAGTCTCTGGAA.. 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.......................................................TTTTACACAAGACTTGTAGTT.............................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0
....................TACGTATATTTTTAAATTAAAA................................................................................................................................................................................................................ 22 2 5 0.20 1 0 0 0 0 0 0 0 1 0
..........................................................................TTTGCAAACGTTGAATAAA............................................................................................................................................................. 19 2 7 0.14 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................CATATTGAGTCTCGGGA... 17 2 8 0.13 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................ATTGAGTCTCGGGAT.. 15 1 11 0.09 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GCTAATGACGTGTTTG...................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................ACTCTTTGTTAATGACGGG.......................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TACCATGTATATATTTTTATATACAGATAAAAATTTAATTTTATCATAAAATACAAAAATTTGCTCTAAACATCAAACGTTTGAAACTCATTTTGGTATTAAGATAGACGTTCCTATAGTTTTGTTGTGAGACAATACTCTTGTGCAACTTATGCAAAACAAAAAAAATGTTTTTACAAACGAATATGACAAGATGAATCCTATTTGATAAACTATTACTGCACAACCTTTTATAACTCAGAGACCTAGG
**************************************************..............(((...(((....(((((((((..((((((.........(((((....)))))(((.((((......)))).)))((((((((.....))))...)))).))))))..))).))))))...)))...)))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
..........................................................................................................GACGTTCCTATAGTT................................................................................................................................. 15 0 3 0.33 1 1 0 0 0
..........................................................................................TCTCGGTATTAAGATAGA.............................................................................................................................................. 18 2 3 0.33 1 0 1 0 0
............................................................................................................................................TTGTGCAACTTATGTAG............................................................................................. 17 2 20 0.05 1 1 0 0 0
...........................................................................................................................................................................................GGCAAGATGAGTCCTA............................................... 16 2 20 0.05 1 0 0 0 1
..........................................................ATTTGCTCTAAACGT................................................................................................................................................................................. 15 1 20 0.05 1 0 0 1 0
....................................................AAAAAAATTTTCTCTAGACAT................................................................................................................................................................................. 21 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:23804843-23805092 + dsi_10432 ATGGTACATATATAA----------------------------A----AATATA------TGTCTATTTTTAAA-------------------------------------TTAAAA--------TAGTATTT-TATGTTTTTAAACGAGA------------------TTTGTAGTTTGCAAACT-TTGAGTAAAACCATAATTCTATCTGCAAGGATATCAAAACAACACTCTGTTAT----------------------GAGA----------------------------A-----------------------------------------CACGTTGAATACGTTTTGTTTTTTTTAC--------------------------AAA-----------------AA----TGTTTGCTTATACTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---ACTTAGGATA-------------A--------------------------ACTATTTGATAATGACGTGTTGGAAAATATTGAGTCTCTGGATC------------------C
droSec2 scaffold_61:65695-65943 + ATGGTACATATATAA----------------------------A----AATATA------TGTCTATTTTTTAA-------------------------------------TTAAAA--------TATTATTT-TATGTTTTTAAACGAGA------------------TTTTTAGTTTGCAAACT-TTGAGTAAAACCATAATTCTATCTGCAAGGATATCAAAACAACACTCTGTTAT----------------------GAGA----------------------------A-----------------------------------------CACTTTGAATACGTTTTGTTTT-TTTAC--------------------------AAA-----------------AA----TGTTTGCTTATACTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---ACTTAGGATA-------------A--------------------------ACTATTTGATAATGACGTGTTGGAAAATATTGAGTCTCTGGATC------------------C
dm3 chr3LHet:2247348-2247503 + TACATATATATATGA----------------------------------ATTAA------AAT---------------------------------------------------------------ATTATTT-GATGTTTTTAAACGAGATTCGTA-----------------GTTTTGCGAACTTTTGAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------TG---------------AA----TGTTTGCTTATACTGTTCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAGGATA-------------A--------------------------AATATTTGATAATGACGTTTTGGAAAATATTGAGTCTCTGGATC------------------C
droEre2 scaffold_4784:24896878-24897038 - AACGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAAACAACACCGTGTTAT----------------------GAGAATATATTCTTACTGAAGTCTTTGACTTAA-----------------------------------------CACGTTGAATACGTTT-------TTTAC--------------------------AAA-----------------AA----ATTTTGTTTATACTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---GCTTAGGATA-------------A--------------------------GCTATTTGATAATGATGTGTTGGAAAATATTGAGTCCTTGGATC------------------C
droYak3 v2_chrUn_003:337857-338038 - GGTATAAATATTAAA----------------------------------ATAAA------TATAAAAATTAAGT-------------------------------------TAAAAA--------GAAAATTT-TATGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTG-------TGGGG------------AAATAAAATTTTATTTGAAAAAAAAAAATATCAAAAATATCATATACATCATCATATCGATATTTTTTTGTGATATTT-TAAAT------------------------------------------------------------------------------------------------------------------------------------------------------ATTATCATCATTTTGTTTTGATA------------------------------------------------------AAAAAAATA--T
droEug1 scf7180000408987:69047-69145 - ATAATATATATATATATATATAT----------------------------ATA------TTTTTTAATAAAAA-------------------------------------TTAAAA-ATTA----------------------------------------------------------AAAATTTTT---------------------------------------------TTTTTT----------------------AAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATGTGTGTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAATTTTT---TC------------------T
droBia1 scf7180000301696:7256-7452 + ATGTAC-ATATATAC----------------------------A----TATACT------TATATACT-----------------------------------T-ATGGGATCGAAA--------ACGTCTCCTTCA------------------CT-----------------GCGTTGCAAACTTCTGACTGAAATTATAATACCATCTGCAAGGGTATAAAACTACT--------------------------------------------------------------------------------------------------------------------------------------TAACGTAGTTACTTTTGGAAATATTT----------------------------------------------------------------------------------------------------------------TAACTAATAAATAATGTTTGG-----------------------------------------------------------------------------------------------TTCTTGT---TT---ACTGGTGATA-------------T--------------------------AGTAACTAGTAATGCTG---------------------------------------------T
droTak1 scf7180000415185:329340-329547 + GTGATGCTGA-TCAA----------------------------G----AATATA------TAT------------------------------------ACTTT-ATGGGGTCGGAA--------ACGTCTCCTTCA------------------CT-----------------GCGTTGCAAACTTCTGACTGAAATCATAATACCCTCTGCAAGGGTATAAAAATAATTTTTCATGGT----------------------AAGC----------------------------A-----------------------------------------CA----A-ACATTCTTAATTCGATTACTAAAAGTACTTAATTCCAGAAA------------------------------------------------------------------------------------------------------------------------------------ATTAGG-----------------------------------------------------------------------------------------------TTTTAGTATTCTGTAAATAAGAATG-------------A--------------------------ATTATT---------------------------------------------------------
droEle1 scf7180000491107:1888681-1888943 - ATGTTTGT-ACAGAT----------------------------A----AATATA------ATTTTGTTTTTAAA-------------------------------------TTAATT--------TAATTTTT-TGTAAAGTAAAAAT-GA------------------AAAATAGATTACACAGGTTGGATTGCGAACACAATT--CTTTGTAAAGTTGAAACATTATA--------------------------------------------------------------------------------TAAATAA---CCA--TAATAATAAAACGGATAAAGTAACCTTTGTCTATTTTG---------------------------A---------------------ATTGTATTG----------------------TTTAAAAAAGTCTTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAT---CA---A--------ACAATTATTAATAAA--------------------------ACTAGCCATAAATGGTATGTTTAAAACTGTTAAATATTC----G------------------C
droRho1 scf7180000767751:217-475 + GTGATGCTGA-TCAA----------------------------G----AATATA------TAT------------------------------------ACTTT-ATAGGGTCGGAA--------ATGTCTCCTTCA------------------CT-----------------GCGTTGCAAACTTTTGACTGAAATTATAATACCCTCTGCAAGGGTATAAAAATATA--------------------------------------------------------------------------------TATTCCG---ATATCTAAATATTAAACAGTTCCATTCTGCTATGGTTTTTTTA---------------------------A---------------------GACGTATTT----------------------AAAGAGTGAGTATTAAAAT-------------------------------------------------------------GGACTAT----------TTTAA----------------TAACCTCTAAT----TAACAATAAGGTATTAGCCCACTT----------------------------------------------------------------------------------------------------------GAAACAGAAGGTTTCCAAATG------------------T
droFic1 scf7180000453932:664129-664295 + CAGACAGACAGACGTATTTCTATTCATATCGTGATGCTGATCAA----AATATA------TAT------------------------------------ACTTTCAT-------GAG--------ATGTCTGCTTCA------------------CT-----------------GGGTTGCAAACTTCTGACTAAAATTATAATACCTTCTGCAAGGGTATAAAAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGCATCGTTGTTTTTTATCTTACAAGAATGGTT
droKik1 scf7180000302469:895600-895705 - ATATAT-----ATAA----------------------------A----AATATA------TAT------------------------------------ATTTT-TGAATATTAAAA--------ATGTGTTTTAAA------------------AT-----------------ATA---TAAATTTTATA---------------------------------------------CTT----------------------------------------------------------------------------------------------------------------------------------------------------------TAAATA-------TATAAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTT-----------------------------------------------------------------------------------TTTAAATATATAA-----------A------------------A
droAna3 scaffold_13099:699415-699672 - ATTATAATAATATTA----------------------------T----CATATC------CGATTATTATTATATATGCTCAGGAGATAGAATATATATACTTT-AAAGGGTCGGAG--------ATGTCTCCTTCA------------------C----------------------TGCAAACTTTTGACCAAAATCAATATACTCTCTGCAAGGGTATAAAAATATTATATTATTAT----------------------AA----------------------------------TACATATAATTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAAGAATT-------------TACTACATTAATTTTGTTTTGCTATAAATTAATTC-----------TTAATATACTTAGAATCTCCAAATT------------------C
droBip1 scf7180000391581:59477-59638 + TTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACTTTTGGACAAAATTATAATGCCCTCTGCAAGGGTATAAAAATAGATTAAAAAAGGC---------------------GGAA------------------------------------------------------------------------------CCACGT-CCAT-----------------------------------------------------------------------------------------------------------------------------------TTTTTTGAAATATCTT------------------------CTATTTCTTTATTATTAAGTAAATTCAAAAAACAGTAA--TTTAAAAATGTT---------------------------------------GGTATT---------------------------------------------------------------------------------------------GTTTTTAAGTT------------------A
dp5 Unknown_singleton_2:1536-1656 + ATAGTAGCTATATAA----------------------------G----TACATATGTACATAT----CCCGTCA----------------------------------G--CTTTGTTATTATAT-------------------------------------------------------------------------------------------------------------TATTAG-AATATTAGCATATTCTTTTACGACG----------------------------ATTA----------------------------------------------GCAACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAAAGTCATAAATTTTTTTGTAA------------------G
droPer2 scaffold_52:190480-190589 + ATGGAATATAAAA-TTTATCA----------------------A----CATATT------TATCTATCATTGAA-------------------------------------CTAAAA--------TAGTATTA-TATAATAAAAAATTATA------------------AATTCAAAGTGCAAA----AGAACAAGCCCATTTTCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT------------------T
droWil2 scf2_1100000004558:17904-18049 + TTGTGATC-----AA----------------------------G----AATT-------------------------------------------------------------------------------------------------------GT-----------------GCCTTACAAACATTTGACCAACTTTATAATACCCTCTGCAAGGGTATAAAAACAGGATAAG------------------------------T----------------------------A-----------------------------------------AA----AAGTAAAATGCACTTATACCT---------------------------A---CT---TTCTTTATATAAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTGTTTTTGT---TT---A---------------------------------------------------------------------------------------AAAGAA------------------A
droVir3 scaffold_12855:9137401-9137539 - ATTGAAAGTTTTTATATATAA----------------------A----ACTATA------TGTTTGAATTTGAA-------------------------------------TTAAAA-ATTAA--GTGTACTT-TATAAT--------------------------------------------------------------------------------------------------------------------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--TTTAAA----TTGGAATGA-GTTTTATTTTACATAATACGAAAAAATACCTGATTTCAG---CT---A----------------------------------------------------------------------------------------------------ACAAAAACA--T
droMoj3 scaffold_6496:7547050-7547247 + TTTTTAAATTTTGTA----------------------------A----AACATA------TATTTAGCCCTAAA-------------------------------------TTTGTATATTATAG--C--TT-----------------------------------------------------------------------------------TTATATTACAATAATTTTTTTTTTC----------------------GAAA----------------------------ATAATATATATATTTATATTCTACAGATGTTTTGT---------------TCTTGT-GTGTTTTTTTTTT--------------------------TTT-----------------TT----TTTTTTTTTTTTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---TTTTATAAAA-------------A--------------------------ATTAATTTTCAATCCTGTCCTGGAAA------------------------------------A
droGri2 scaffold_15126:8331315-8331422 + ATGGTTCT-ATATAA----------------------------TTATAATTATA------TATGTAT--------------------------------------ATATAATTGTAA--------GCATGTCTTTGA------------------CTTTTTACATATAATATATGACTAGTAAATT-CCCAGTAAAACCGTGTTTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATGGTACATATATAA----------------------------A----AATATA------TGTCTATTTTTAAA-------------------------------------TTAAAA--------TAGTATTT-TATGTTTTTAAACGAGA------------------TTTGTAGTTTGCAAACT-TTGAGTAAAACCATAATTCTATCTGCAAGGATATCAAAACAACACTCTGTTAT----------------------GAGA----------------------------A-----------------------------------------CACGTTGAATACGTTTTGTTTTTTTTAC--------------------------AAA-----------------AA----TGTTTGCTTATACTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---ACTTAGGATA-------------A--------------------------ACTATTTGATAATGACGTGTTGGAAAATATTGAGTCTCTGGATC------------------CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATAATGACGTGTTGGAAAATAT.................................2511.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAATGACGTGTTGGAAAATAT.................................2611.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGAGTCTCTGGATC------------------C1911.00100100000000000000
............................................................................................................................................................................................................................................TTAT----------------------GAGA----------------------------A-----------------------------------------CACGTTGAATACGTT...........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---ACTTAGGATA-------------A--------------------------ACTATTTGA......................................................2611.00100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------ACTATTTGATAATGACGT.............................................1911.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAATGACGTGTTGGAAAATATT................................2511.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAGTCTCTGGAA....................1630.33100000001000000000
droSec2
ATGGTACATATATAA----------------------------A----AATATA------TGTCTATTTTTTAA-------------------------------------TTAAAA--------TATTATTT-TATGTTTTTAAACGAGA------------------TTTTTAGTTTGCAAACT-TTGAGTAAAACCATAATTCTATCTGCAAGGATATCAAAACAACACTCTGTTAT----------------------GAGA----------------------------A-----------------------------------------CACTTTGAATACGTTTTGTTTT-TTTAC--------------------------AAA-----------------AA----TGTTTGCTTATACTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---ACTTAGGATA-------------A--------------------------ACTATTTGATAATGACGTGTTGGAAAATATTGAGTCTCTGGATC------------------CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TACATATATATATGA----------------------------------ATTAA------AAT---------------------------------------------------------------ATTATTT-GATGTTTTTAAACGAGATTCGTA-----------------GTTTTGCGAACTTTTGAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------TG---------------AA----TGTTTGCTTATACTGTTCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAGGATA-------------A--------------------------AATATTTGATAATGACGTTTTGGAAAATATTGAGTCTCTGGATC------------------CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGAAAATATTGAGTCTCTGGA.....................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGAAAATATTGAGTCTCTGGATC------------------.2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAATGACGTTTTGGAAAATATT................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAAATATTGAGTCTCTGGATC------------------.2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAATGACGTTTTGGAAAATAT.................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAAATATTGAGTCTCTGGAT....................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAAATATTGAGTCTCTGGA.....................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-------------A--------------------------AATATTTGATAATGACGTTTTGGA.......................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGACGTTTTGGAAAATATTGAG.............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAATGACGTTTTGGAA......................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTGCTTATACTGTTCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAC...........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAATGACGTTTTGGAAAA....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATATTGAGTCTCTGGATC------------------C2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAATGACGTTTTGGAAAATA..................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................ATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------TG---------------AA----TGTTTGCTTA................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------AATATTTGATAATGACGTTTTGG........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TA-----------------GTTTTGCGAACTTTTGAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------T................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGATAATGACGTTTTGGAAAATAT.................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATACTGTTCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAG...........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTGATAATGACGTTTTGGAAA.....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAGTCTCTGGATC------------------C1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------A--------------------------AATATTTGATAATGACGTT............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AACGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAAACAACACCGTGTTAT----------------------GAGAATATATTCTTACTGAAGTCTTTGACTTAA-----------------------------------------CACGTTGAATACGTTT-------TTTAC--------------------------AAA-----------------AA----ATTTTGTTTATACTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---GCTTAGGATA-------------A--------------------------GCTATTTGATAATGATGTGTTGGAAAATATTGAGTCCTTGGATC------------------CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAAATATTGAGTCCTT........................2011.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTGTTGGAAAATA..................................1911.0010000100
.........................................................................................................................................................................................................................................................................AATATATTCTTACTGAAGTCTTTGACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATAATGATGTGTTGGAAA.....................................2111.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAATGATGTGTTGGAAA.....................................2011.0010001000
droYak3
GGTATAAATATTAAA----------------------------------ATAAA------TATAAAAATTAAGT-------------------------------------TAAAAA--------GAAAATTT-TATGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTG-------TGGGG------------AAATAAAATTTTATTTGAAAAAAAAAAATATCAAAAATATCATATACATCATCATATCGATATTTTTTTGTGATATTT-TAAAT------------------------------------------------------------------------------------------------------------------------------------------------------ATTATCATCATTTTGTTTTGATA------------------------------------------------------AAAAAAATA--TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------------------------------------------------------------------------ATTATCATCATTTTGTTTTGATA------------------------------------------------------............24200.20404000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTTTGTGATATTT-TAAAT------------------------------------------------------------------------------------------------------------------------------------------------------AT.......................................................................................25170.06101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT------------------------------------------------------------------------------------------------------------------------------------------------------ATTATCATCATTTTGTTTTGATA------------------------------------------------------............26200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAT------------------------------------------------------------------------------------------------------------------------------------------------------ATTATCATCATTTTGTTTTGAT...................................................................27200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAT------------------------------------------------------------------------------------------------------------------------------------------------------ATTATCATCATTTTGTTTTGA....................................................................26200.05100100000000
droEug1
ATAATATATATATATATATATAT----------------------------ATA------TTTTTTAATAAAAA-------------------------------------TTAAAA-ATTA----------------------------------------------------------AAAATTTTT---------------------------------------------TTTTTT----------------------AAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATGTGTGTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAATTTTT---TC------------------TSizeHit CountTotal NormTotal
No Reads
droBia1
ATGTAC-ATATATAC----------------------------A----TATACT------TATATACT-----------------------------------T-ATGGGATCGAAA--------ACGTCTCCTTCA------------------CT-----------------GCGTTGCAAACTTCTGACTGAAATTATAATACCATCTGCAAGGGTATAAAACTACT--------------------------------------------------------------------------------------------------------------------------------------TAACGTAGTTACTTTTGGAAATATTT----------------------------------------------------------------------------------------------------------------TAACTAATAAATAATGTTTGG-----------------------------------------------------------------------------------------------TTCTTGT---TT---ACTGGTGATA-------------T--------------------------AGTAACTAGTAATGCTG---------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
GTGATGCTGA-TCAA----------------------------G----AATATA------TAT------------------------------------ACTTT-ATGGGGTCGGAA--------ACGTCTCCTTCA------------------CT-----------------GCGTTGCAAACTTCTGACTGAAATCATAATACCCTCTGCAAGGGTATAAAAATAATTTTTCATGGT----------------------AAGC----------------------------A-----------------------------------------CA----A-ACATTCTTAATTCGATTACTAAAAGTACTTAATTCCAGAAA------------------------------------------------------------------------------------------------------------------------------------ATTAGG-----------------------------------------------------------------------------------------------TTTTAGTATTCTGTAAATAAGAATG-------------A--------------------------ATTATT---------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ATGTTTGT-ACAGAT----------------------------A----AATATA------ATTTTGTTTTTAAA-------------------------------------TTAATT--------TAATTTTT-TGTAAAGTAAAAAT-GA------------------AAAATAGATTACACAGGTTGGATTGCGAACACAATT--CTTTGTAAAGTTGAAACATTATA--------------------------------------------------------------------------------TAAATAA---CCA--TAATAATAAAACGGATAAAGTAACCTTTGTCTATTTTG---------------------------A---------------------ATTGTATTG----------------------TTTAAAAAAGTCTTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAT---CA---A--------ACAATTATTAATAAA--------------------------ACTAGCCATAAATGGTATGTTTAAAACTGTTAAATATTC----G------------------CSizeHit CountTotal NormTotal
No Reads
droRho1
GTGATGCTGA-TCAA----------------------------G----AATATA------TAT------------------------------------ACTTT-ATAGGGTCGGAA--------ATGTCTCCTTCA------------------CT-----------------GCGTTGCAAACTTTTGACTGAAATTATAATACCCTCTGCAAGGGTATAAAAATATA--------------------------------------------------------------------------------TATTCCG---ATATCTAAATATTAAACAGTTCCATTCTGCTATGGTTTTTTTA---------------------------A---------------------GACGTATTT----------------------AAAGAGTGAGTATTAAAAT-------------------------------------------------------------GGACTAT----------TTTAA----------------TAACCTCTAAT----TAACAATAAGGTATTAGCCCACTT----------------------------------------------------------------------------------------------------------GAAACAGAAGGTTTCCAAATG------------------TSizeHit CountTotal NormTotal
No Reads
droFic1
CAGACAGACAGACGTATTTCTATTCATATCGTGATGCTGATCAA----AATATA------TAT------------------------------------ACTTTCAT-------GAG--------ATGTCTGCTTCA------------------CT-----------------GGGTTGCAAACTTCTGACTAAAATTATAATACCTTCTGCAAGGGTATAAAAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGCATCGTTGTTTTTTATCTTACAAGAATGGTTSizeHit CountTotal NormTotal
No Reads
droKik1
ATATAT-----ATAA----------------------------A----AATATA------TAT------------------------------------ATTTT-TGAATATTAAAA--------ATGTGTTTTAAA------------------AT-----------------ATA---TAAATTTTATA---------------------------------------------CTT----------------------------------------------------------------------------------------------------------------------------------------------------------TAAATA-------TATAAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTT-----------------------------------------------------------------------------------TTTAAATATATAA-----------A------------------ASizeHit CountTotal NormTotal
No Reads
droAna3
ATTATAATAATATTA----------------------------T----CATATC------CGATTATTATTATATATGCTCAGGAGATAGAATATATATACTTT-AAAGGGTCGGAG--------ATGTCTCCTTCA------------------C----------------------TGCAAACTTTTGACCAAAATCAATATACTCTCTGCAAGGGTATAAAAATATTATATTATTAT----------------------AA----------------------------------TACATATAATTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAAGAATT-------------TACTACATTAATTTTGTTTTGCTATAAATTAATTC-----------TTAATATACTTAGAATCTCCAAATT------------------CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................TATATACTTT-AAAGGGTCGGAG--------ATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.05210210000
......................................................................................................................................................................................................................................................................................................................TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAAG...........................................................................................................26150.7311812000
............................................................................................TATATATACTTT-AAAGGGTCGGAG--------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.70140140000
....................................................................................................................................................................................................................................................................................................................TATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTT..............................................................................................................25160.447151000
...................................................................................................................................................................................................................................................................................................................TTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GT...............................................................................................................25150.406222000
............................................................................................TATATATACTTT-AAAGGGTCGGAG--------ATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.306420000
....................................................................................................................................................................................................................................................................................................................TATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAAG...........................................................................................................28150.274220000
...................................................................................................................................................................................................................................................................................................................TTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTT..............................................................................................................26150.203120000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAAG...........................................................................................................24160.193021000
....................................................................................................................................................................................................................................................................................................................TATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GT...............................................................................................................24160.193030000
.......................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GT...............................................................................................................21170.183110010
................................................................................................TATACTTT-AAAGGGTCGGAG--------ATGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.153030000
...................................................................................................................................................................................................................................................................................................................TTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAAG...........................................................................................................29140.142200000
....................................................................................................................................................................................................................................................................................................................TATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GC...............................................................................................................24160.132020000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAAGC..........................................................................................................24160.132020000
....................................................................................................................................................................................................................................................................................................................TATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTA.............................................................................................................26160.132020000
..........................................................................................................AAGGGTCGGAG--------ATGTCTCCTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102001010
.....................................................................................................TTT-AAAGGGTCGGAG--------ATGTCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102020000
................................................................................................................................................................................................................................................................................................................TAATTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GC...............................................................................................................28100.101010000
.................................................................................................................................................................................................................................................................................................................AATTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---TC...............................................................................................................27130.081010000
.................................................................................................................................................................................................................................................................................................................AATTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GT...............................................................................................................27130.081010000
..................................................................................................................................................................................................................................................................................................................ATTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GC...............................................................................................................26130.081010000
..................................................................................................................................................................................................................................................................................................................ATTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GT...............................................................................................................26130.081010000
.................................................................................................................................................................................................................................................................................................................AATTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTT...........................................................................................................................21150.071100000
...................................................................................................................................................................................................................................................................................................................TTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GG...............................................................................................................25150.071010000
....................................................................................................................................................................................................................................................................................................................TATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAA............................................................................................................27150.071100000
......................................................................................................................................................................................................................................................................................................................TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAAGC..........................................................................................................27150.071010000
....................................................................................................................................................................................................................................................................................................................TATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAAGC..........................................................................................................29150.071010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAAGC..........................................................................................................25160.061010000
....................................................................................................................................................................................................................................................................................................................TATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTC..............................................................................................................25160.061010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAAG...........................................................................................................23160.061100000
......................................................................................................................................................................................................................................................................................................................TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTT..............................................................................................................23160.061100000
.....................................................................................................................................................................................................................................................................................................................ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GT...............................................................................................................23160.061010000
....................................................................................................................................................................................................................................................................................................................TATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---C.....................................................................................................................21170.061010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GT...............................................................................................................19180.061100000
...........................................................................................ATATATATACTTT-AAAGGGTCGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
................................................................................................TATACTTT-AAAGGGTCGGAG--------ATGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------TTCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAAT...........................................................................................................20200.051001000
......................................................................................................TT-AAAGGGTCGGAG--------ATGTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
..................................................................................................TACTTT-AAAGGGTCGGAG--------ATGTCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
...............................................................................................ATATACTTT-AAAGGGTCGGAG--------ATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000
...............................................................................................ATATACTTT-AAAGGGTCGGAG--------ATGTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
................................................................................................TATACTTT-AAAGGGTCGGAG--------ATGTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
.........................................................................................GAATATATATACTTT-AAAGGGTCGGAG--------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC-----------------------------------------------------------------------------------------------TCCTTGT---TT---GTTAAG...........................................................................................................18200.051100000
.................................................................................................ATACTTT-AAAGGGTCGGAG--------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
.............................................................................................ATATATACTTT-AAAGGGTCGGAG--------ATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
droBip1
TTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACTTTTGGACAAAATTATAATGCCCTCTGCAAGGGTATAAAAATAGATTAAAAAAGGC---------------------GGAA------------------------------------------------------------------------------CCACGT-CCAT-----------------------------------------------------------------------------------------------------------------------------------TTTTTTGAAATATCTT------------------------CTATTTCTTTATTATTAAGTAAATTCAAAAAACAGTAA--TTTAAAAATGTT---------------------------------------GGTATT---------------------------------------------------------------------------------------------GTTTTTAAGTT------------------ASizeHit CountTotal NormTotal
No Reads
dp5
ATAGTAGCTATATAA----------------------------G----TACATATGTACATAT----CCCGTCA----------------------------------G--CTTTGTTATTATAT-------------------------------------------------------------------------------------------------------------TATTAG-AATATTAGCATATTCTTTTACGACG----------------------------ATTA----------------------------------------------GCAACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAAAGTCATAAATTTTTTTGTAA------------------GSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................TAGCATATTCTTTTACGACG----------------------------ATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010100000000
droPer2
ATGGAATATAAAA-TTTATCA----------------------A----CATATT------TATCTATCATTGAA-------------------------------------CTAAAA--------TAGTATTA-TATAATAAAAAATTATA------------------AATTCAAAGTGCAAA----AGAACAAGCCCATTTTCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT------------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTGTGATC-----AA----------------------------G----AATT-------------------------------------------------------------------------------------------------------GT-----------------GCCTTACAAACATTTGACCAACTTTATAATACCCTCTGCAAGGGTATAAAAACAGGATAAG------------------------------T----------------------------A-----------------------------------------AA----AAGTAAAATGCACTTATACCT---------------------------A---CT---TTCTTTATATAAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTGTTTTTGT---TT---A---------------------------------------------------------------------------------------AAAGAA------------------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................GACCAACTTTATAATACCCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07101000
droVir3
ATTGAAAGTTTTTATATATAA----------------------A----ACTATA------TGTTTGAATTTGAA-------------------------------------TTAAAA-ATTAA--GTGTACTT-TATAAT--------------------------------------------------------------------------------------------------------------------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--TTTAAA----TTGGAATGA-GTTTTATTTTACATAATACGAAAAAATACCTGATTTCAG---CT---A----------------------------------------------------------------------------------------------------ACAAAAACA--TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAA----TTGGAATGA-GTAC............................................................................................................................................................1970.141000000000100000000000000000000000000000000000000000000000000000
droMoj3
TTTTTAAATTTTGTA----------------------------A----AACATA------TATTTAGCCCTAAA-------------------------------------TTTGTATATTATAG--C--TT-----------------------------------------------------------------------------------TTATATTACAATAATTTTTTTTTTC----------------------GAAA----------------------------ATAATATATATATTTATATTCTACAGATGTTTTGT---------------TCTTGT-GTGTTTTTTTTTT--------------------------TTT-----------------TT----TTTTTTTTTTTTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---TTTTATAAAA-------------A--------------------------ATTAATTTTCAATCCTGTCCTGGAAA------------------------------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTT--------------------------TTT-----------------TT----TTTTTTTTTTTTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---TTT..............................................................................................................36200.102000200
.................................................................................................................................................................................................................................................................................................................................................................GTTTTTTTTTT--------------------------TTT-----------------TT----TTTTTTTTTTTTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---T................................................................................................................36200.051010000
droGri2
ATGGTTCT-ATATAA----------------------------TTATAATTATA------TATGTAT--------------------------------------ATATAATTGTAA--------GCATGTCTTTGA------------------CTTTTTACATATAATATATGACTAGTAAATT-CCCAGTAAAACCGTGTTTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:48 AM