ID:

dsi_10416

 Coordinate:

2r:5330069-5330194 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5329634_5330068_-]; CDS [2r_5329634_5330068_-]; CDS [2r_5330195_5330266_-]; exon [2r_5330195_5330489_-]; intron [2r_5330069_5330194_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------##################################################
CAGGTCCCAGCAAGAAGACGGAGCAGAAAAAGAAGGAGAAAGTCATTGAGGTAGGCTTCGTAACCGGAAAGCCGATGGGTGAGCCCCCCTCTTCGTAAATTCGTGATGTGGAAACCCGGCTGGGAGAAATTCAATAAGATCCAAATTGAACTGACCAAGTGTAATTCCATCGACAGGACAAGACCTTCGGGCTGAAGAACAAGAAGGGCAACAAGCAGCAGAAGTT
**************************************************...((((((.......)).))))((.(((......))).)).........(((....((((((.....(((.((.....((((((.........))))))....)).)))....)))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR902008
ovaries
 M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
....................................................AGGCCTCGTAATCGGAA............................................................................................................................................................. 17 2 11 22.73 250 247 1 0 0 0 0 0 2 0 0 0 0
....................................................AGGCCTCGTAATCGGAATG........................................................................................................................................................... 19 3 20 4.40 88 88 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TGAACAACCAGAAGGGCAAGAA............ 22 3 7 3.14 22 22 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTGAGGACAAGACCTTCGGGCTGAAGA............................ 27 3 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGAGGACAAGACCTTCGGGCTGAAGA............................ 26 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................AGGAGAAAGTCATTGAGGAC............................................................................................................................................................................. 20 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TGAAGAACAAGAAGGGCAACAAGCAGCA...... 28 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTCGGGCTGAAGAACAAGAAGGGCA................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........AAAAAGGCGGAGCAAAAAAAGAAGGA............................................................................................................................................................................................. 26 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
............................................ATTGAGGTAGGCTTCGTAACCGGAA............................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................GGACAAGACCTTCGGGCTG................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................ATGTGGAAACCCGGCTGGGCG.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................GAAGGAGAAAGTCATTGAGGACA............................................................................................................................................................................ 23 3 3 1.00 3 0 0 3 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CCTTCGGGCTGAAGAACAAGAAGGGC................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....TCCCAGCAAGAAGACGGA............................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................GAGGACAAGACCTTCGGGCTGAAG............................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ACCTTCGGGCTGAAGAACAAGAAGGGC................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................AGAAGGAGAAAGTCATTGAGGAC............................................................................................................................................................................. 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................TGAGGACAAGACCTTCGGGCTGAAGAAC.......................... 28 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TGAAGAACAAGAAGGGCAACAAGCAGC....... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................AGAAAGTCATTGAGGTAGGCT......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...........AAGAAGACCGAGAAGAAAAA................................................................................................................................................................................................... 20 2 19 0.63 12 0 0 0 0 0 0 0 0 0 12 0 0
...................................................TAGGCCTCGTAATCGGAATG........................................................................................................................................................... 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTGAGGACAAGACCTTCGGGC.................................. 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................GAGGCCTCGTAACCGGAA............................................................................................................................................................. 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................AGGAGAATGTCAATGAGGT.............................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................GTAACTTCGTGATATGGA.................................................................................................................. 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................................GAGGCTTCGTAATCGGAA............................................................................................................................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................AGCAGAACAAGAAGGAGAACGACA..................................................................................................................................................................................... 24 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0
.................................................GGTAGGCTTTGAAACCG................................................................................................................................................................ 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1
....................................................AGGCCTCGTAACCGGAATGA.......................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................GGCTTCGTAATCGGA.............................................................................................................................................................. 15 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGAAACCCGGCTGGA...................................................................................................... 15 1 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0
.........CCAAGAAGACCGAGAAGAAAAA................................................................................................................................................................................................... 22 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0
............................................ATTGAGGTAGGCGTCGGAT................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................CGTCAATGAGTGATGTGGA.................................................................................................................. 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AAATTAGTGCTGTGGAACC............................................................................................................... 19 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................GGCTTGGAGAAAGTCAA............................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..................GTGAGCGGAAAAAGAAGGAGA........................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................GATGGTTGAGCCCCCA......................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GTCCAGGGTCGTTCTTCTGCCTCGTCTTTTTCTTCCTCTTTCAGTAACTCCATCCGAAGCATTGGCCTTTCGGCTACCCACTCGGGGGGAGAAGCATTTAAGCACTACACCTTTGGGCCGACCCTCTTTAAGTTATTCTAGGTTTAACTTGACTGGTTCACATTAAGGTAGCTGTCCTGTTCTGGAAGCCCGACTTCTTGTTCTTCCCGTTGTTCGTCGTCTTCAA
**************************************************...((((((.......)).))))((.(((......))).)).........(((....((((((.....(((.((.....((((((.........))))))....)).)))....)))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................................................................................................................CTAGCAGCCTGACTTCTTG.......................... 19 3 20 1.80 36 29 0 0 6 0 0 0 0 1
.....................................................................................................................................................................................CTGGCAGCCTGACATCTTG.......................... 19 3 10 1.30 13 11 0 0 2 0 0 0 0 0
.....GGGTCGTTCTTCTGCCTCGTC........................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................GACTGGTTCACATTAAGGTAG....................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................GTCCACATTAAGGTGCCTGT................................................... 20 3 4 0.25 1 0 0 0 0 1 0 0 0 0
...........................CTTTCTCCCTCTTTCTGTAACT................................................................................................................................................................................. 22 3 6 0.17 1 0 0 0 0 1 0 0 0 0
.....GGGTCGGTCTCCTGCTTCGTC........................................................................................................................................................................................................ 21 3 8 0.13 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................GGTAGCGGTCGTGTTCTG.......................................... 18 2 9 0.11 1 0 0 0 0 0 1 0 0 0
......................................................................................................................CGGGCCTCTTTAGGTTATTC........................................................................................ 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0
............................................................................................................ACCATTGGGCCGACC....................................................................................................... 15 1 13 0.08 1 0 0 0 0 0 0 0 1 0
.................................................................................TCCGGGGGAGAGGCAT................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0

Generated: 04/23/2015 at 01:10 PM