ID:

dsi_1041

 Coordinate:

2r:11949029-11949308 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-60.1 -59.9 -59.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CGGT)nSimple_repeatSimple_repeat+
mature
star
  1. 2l:16062546-16062564 -
  2. dsi_1041  2r:11949251-11949269 +

Sense Strand Reads

CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGAGCAGCACGGCAAACAAGTAAAGACTTAGCCAAAACAGCTGAACAGTAGCTGAGCTGAACTGAACTCCAGGCCGTAACAAGTGTGGCAGTAGCAAGGTGTTCGTGCCACTGAAACAACAAGTATCCAGCACAGTACTTTCTCTTTCGGTTAGTCGGTCGGTCGGTTGGTCGTTTGGTCGGTTTGTCCGAGTGTGTGCGTGTTGGCCACCTAAGTCCGGGTGCGTGCGTGTGTGTGCGCGCTAGCTGTGTTTTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAATTTTTACTATCGCCGCTCCGCGTGTGTACTTGTAACTCTGGAAAGTTTCT
**********************************************************************************..(((((((.((((((.((((((((.........(((((..((((...))))..)))))((((((....((((((........))))))....)))))).........)))))...)))..)))))))))))))(((((((.(((.((......)))))...(((...(((((((((......))))))))).))).....))))))).***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR902009
testis
..................................................................................CTGAGCTGAACTGAACTC........................................................................................................................................................................................................................................................................................ 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.......................................................................................CTGAACTGAACTCCAGGC................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................GCTGAGCTGAACTGAACTC........................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................CTAGCTGTGTTTTTGGATG......................................................................................... 19 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
................................................................................AGCTGAGCTGAACTGAACTCCAG..................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................GATGTTGGCCGGAAGAAC........................................................................................................................................................................................................................................................................................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................TGAACAGTAGCTGAGCTG.................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................GTGCGTGCGTGTGTGTGCGCGC........................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................TGATGTTGGCCGGAAGAGCAGCAC................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...TCGCTAGCTGGACGTGATG...................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................TGAACTGAACTCCAGGCCGTAACAAGTGT....................................................................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................TGATGTTGGCCGGAAGAGCAGCA.................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............ACGTGATGTTGGCCGGAAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......TAGCTGGGCGTGTTGTTGGCCT............................................................................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................TGTAACTCTGGAAGG..... 15 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TACACGGTCGGTCGGTTGGGC................................................................................................................................................................................. 21 3 5 0.40 2 0 0 0 0 0 0 0 2 0 0 0
.............................................................................................TTAACTCCAGGCCGTAAAA............................................................................................................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................TGCTGAACTGAACTGAACTACAG..................................................................................................................................................................................................................................................................................... 23 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................GTCGGTCGGTCGGTTGGTC................................................................................................................................................................................. 19 0 10 0.20 2 0 0 0 1 0 0 0 0 0 0 1
................................................................................................................................................................................................................GTCGCTTTGTCCGAG............................................................................................................................................................. 15 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
..................................GAAGCATGGCAAACAAGTAAAA.................................................................................................................................................................................................................................................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................GTCAGTTTGTCCGAG............................................................................................................................................................. 15 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................GTGTGTGCGTGTTGGC.............................................................................................................................................. 16 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................AACATTAGCTGGGCTGAACC.............................................................................................................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
.......................TGGCAGGTAGAGCAGCAC................................................................................................................................................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0
......................GTGGCCGGAAGAGCA....................................................................................................................................................................................................................................................................................................................................................... 15 1 20 0.10 2 0 0 0 1 0 0 0 1 0 0 0
.......................TGGCCGGAAGAGCACCGCA.................................................................................................................................................................................................................................................................................................................................................. 19 3 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0
..................................................GTAAAGATTTAGCCA........................................................................................................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................GGTGGTAGTAGCAAGG.......................................................................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
................................................................................................................................................................................................................GTCGATATGTCCGAGTG........................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................AACTCTAGGCGGTAACCAG.......................................................................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................CTGAATTGAACCCCAGG.................................................................................................................................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................................................................CTCCGCTCCGCGTCTGGAC..................... 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTCAGCGATCGACCTGCACTACAACCGGCCTTCTCGTCGTGCCGTTTGTTCATTTCTGAATCGGTTTTGTCGACTTGTCATCGACTCGACTTGACTTGAGGTCCGGCATTGTTCACACCGTCATCGTTCCACAAGCACGGTGACTTTGTTGTTCATAGGTCGTGTCATGAAAGAGAAAGCCAATCAGCCAGCCAGCCAACCAGCAAACCAGCCAAACAGGCTCACACACGCACAACCGGTGGATTCAGGCCCACGCACGCACACACACGCGCGATCGACACAAAAACCTACGTTTAGTTTCGCGTCGAGTGGACTTTTCATACGAAATTTAAAAATGATAGCGGCGAGGCGCACACATGAACATTGAGACCTTTCAAAGA
*****************************************************************************************..(((((((.((((((.((((((((.........(((((..((((...))))..)))))((((((....((((((........))))))....)))))).........)))))...)))..)))))))))))))(((((((.(((.((......)))))...(((...(((((((((......))))))))).))).....))))))).********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
.................................................................................................................................................................................................................................ACACGCACAACCGGTGGATTCAGGCCCA............................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0
..........................GGCCTTCTCATCGTGCCTTTTAT........................................................................................................................................................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................ACCAAAACTTACGTTTAGTTT................................................................................ 21 2 2 0.50 1 0 0 0 1 0
...........................................................................................................................................................................................................................................................................................................................................................................TAGAGACCTTTCAAAG. 16 1 4 0.25 1 0 0 1 0 0
.............................................................................................................................................................GGTCGTGTCATGAAG................................................................................................................................................................................................................ 15 1 5 0.20 1 0 0 1 0 0
.........................................................................................................................................................CAGAGGGCGTGTCATGAAG................................................................................................................................................................................................................ 19 3 9 0.11 1 0 0 1 0 0
......................................................TCTGACTCGGCTATGTCGA................................................................................................................................................................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 1
...........................................................................TGTCATCGACTCGATTG................................................................................................................................................................................................................................................................................................ 17 2 9 0.11 1 0 0 1 0 0
...............................TCTCGGCGTGCCTTTTGTGC......................................................................................................................................................................................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................AGAGACCTTTCAAAG. 15 1 16 0.06 1 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................TAGAGACCTTTCAAA.. 15 1 18 0.06 1 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................................TCGCGTCGAGTGGACGA................................................................ 17 2 20 0.05 1 0 0 0 0 1
.................................TCGGCGTGCCTTTTGTGCA........................................................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1
..................................................................................................AGTTCCGGCATTGCTC.......................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:11948979-11949358 + dsi_1041 CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGAGCAGCACGGCAAAC--AAG---------------------T---AA----------------AGAC--TTAGCCA-----AAA-------------------------------------CAGCTGAACAGTAGCT-----GAGCTG----------AACTGAAC-------TCCAGGC---------------------C-GTAACA--AGTGTGGCA---------GT----AG---------CAAGG---TGTTCGTGCCACTGAAA----CAACAAGTATCC----------------------------------------------------------------------AGC---ACAGTACTTTCTCTT--TCGGTTAGTCGGTCGGTCGGTTGGTCGTTT----------------GGTC----------------------------------------------GGTTTGTC------CGAGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTGGCCACCTAA-GTC---------CGGGTGCGTGCGT----------------GTGT----------------------GTGCGCGCTAGCTG---------------TGTTTTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTT--TACTATCGCC----GCTC--CGC-----------------------------------------------GTGT----------GTA----------------------------------------------CTTGTAA----------CTCTG-GAAAGTTTCT
droSec2 scaffold_1:8768351-8768729 + CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGAGCAGCACGGCAAAC--AAG---------------------T---AA----------------AGAC--TTAGCCA------AA-------------------------------------CAGCTGAACAGTAGCT-----GAGCTG----------AATTGAAC-------TCCAGGC---------------------C-GTAACA--AGTGTGGCA---------GT----AG---------CTAGG---TGTTCGTGCCACTGAAA----CAACAAGTATCC----------------------------------------------------------------------AGC---ACAGTACTTTCTCTT--TCGGTTAGTCGGTCGGTCGGTTGGTCGTTT----------------GGTC----------------------------------------------GGTTTGTC------CGAGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTGGCCAGCTAA-GTC---------CGGGTGCGTGCGT----------------GTGT----------------------GTGCGCGCTAGCTG---------------TGTTTTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTT--TACTATCGCC----GCTC--CGC-----------------------------------------------GTGT----------GTA----------------------------------------------CTTGTAA----------CTCTA-AAAAGTTTCT
dm3 chr2R:11288600-11288979 + CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGAGCAGCACGGCAAAC--AAA---------------------T---AA----------------AGAC--TTAGCCA-----AAA-------------------------------------CAGCTGAACAATAGCT-----GAGCTG----------AACTGAAC-------TCCAGGC---------------------C-GTAACA--AGTGTGGCA---------GT----AG---------TTAGG---TGTTCGTGCCGCTGAAA----CAACAAGTATCC----------------------------------------------------------------------AGC---ACAGTACTTTCTATT--TCGGTTAGTCGGTCGGTCGGTTGGTCGTTT----------------GGTC----------------------------------------------GGTTTGTC------CGAGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTGGCCACCTAA-GTC---------CTGGTGCGTGCGT----------------GTGT----------------------GTGCGCGCTAACTG---------------TGTTTTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTT--TACTATCGCC----ACTC--CGC-----------------------------------------------GTGT----------GTA----------------------------------------------CTTGTAA----------CTCTG-AAAAGTTTCT
droEre2 scaffold_4845:14586854-14587267 - CAGTCGCTAGCTGGACGTGGTGTTGGCCGGAAGAGCAGCACGGCAAAC--AAG---------------------T---GA----------------AGAC--TTAGCCA-----AAA-------------------------------------CAGCTGAACAGGAGCT-----GAGCTG----------AACTGAAC-------TCCAGGC---------------------C-GTAACA--AGTGTGGCA---------GT----AG---------TGAGG---TGTTCGTGCCGCTGAAACAAACAACAAGTATCC----------------------------------------------------------------------AGC---ACAGTACTTTCTCTT--TCGGTTAGTCGGTCGGTCGGTTGGTCGGTTGGTCGCTTGGTCGCTTGGTC----------------------------------------------GGTTTGGC------CGAGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTGGCCAACTAA-ATC---------CGGGTGCGTGCGT----------------GTGTGTG------T---------GT-GCGCGCGCTCGCTG---------------TGTTTTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTT--TACTATCGCC----GCTC--CGCCT--GTA------CT-------------------------------CCTGT----------GTA----------------------------------------------CTTGTAA----------CTCTG-GAAAGTTTCT
droYak3 2R:17712139-17712549 - CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGAGCAGCACGGCAAAC--CAG---------------------T---AA----------------AGAC--TTAGCCA-----AAA-------------------------------------CAGCTGAACAGGAGCTGAACTGAGCTG----------AACTGAAC-------TCCAGGC---------------------C-GTAACA--AGTGTGGCA---------GT----AG---------TGAGG---TGTTCGTGCCGCTGAAA----CAACAAGTATCC----------------------------------------------------------------------AGC---ACAGTACTTTCTCTT--TCGGTTAGTCCGTCGGTCGGTTGGTCGCTT--------GGTCCGTTGGTC----------------------------------------------GGTTTGGC------CGAGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTGGCCAACTAA-ATC---------CGGGTGCGTGCGTGTATGCGTTAGTGTG-------------------AGTGTGT-GTGCGCGCTCGCTG---------------TGTTTTTGAATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTT--TACTATCGCC----GCAC--CGC-----------------------------------------------CTGT----------GTA----------------------------------------------CTTGTAA----------CTCTG-GAAAGTTTCT
droEug1 scf7180000409672:148582-148939 + TAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAAAC--C----CAA---AA---------AA----GAAAACCATCAA------AAACTCTTTA------------------------------------------------------------------------CTG----------AA--TAAC-------TCTAAGC---------------------C-GTAACAAAAGTGTGGCA---------AC----AG---------TGAGG---TGTTCGTGCCGTTGAAA----CAACAAGTATCC----------------------------------------------------------------------------GCAGTACTTTCTCTT--TCGGTCGT--------------------TT-----------------------------------------CCAG------TAGTGTATGCG--------------TGTTTGAGTGTGTGTGT--------------------------T------------------------------------------------------------------------T--GTGTGTGGCATGTGTGCGTGTTAGCCAACTGA-ATC---------GTAGTGCGCGTGT----------------G--------------------------TGCG-------TT---------------TGT-TTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-ATTTCGTACTTTCG-------------------------------------------------------------TTTGT----------GTA----------------------------------------------CTTGTAA----------CTCTG-GAAAGTTTGT
droBia1 scf7180000302143:116729-117090 - CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAAAC--AAGCAGAGACCAGAACCCG---GA---------CAGGCAA------AGACTCTTAGCCA------AA-------------------------------------CAGC-----------------------------T-------GAAC-------TCTGGGC---------------------C-GTAACA--AGTGCGGCA---------GA----AG---------TGGGG---TGTTCGTGCCGCCGAAA----CAACAAGTATCC----------------------------------------------------------------------------GCAGTACTTTCTCTT--TCGCTCGGT---TCCCTCGGTTC------------------------------------------------------TTCG-----------------G---TCCGTGTACGTGCGTG---------------------------------------------------------------------------------------------------TGTG-TGAGTGTGT----TGTGTGCGTGTCAGCCCAGTAA-ATC---------C----------------------------------------------------------------GCCG---------------TGT-TTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTG--TCCTATCGCCCG---CTC--CGCTTT-------------------------------------------TTTGT----------GCG----------------------------------------------CTTGTAA----------CTCTG-GTAACTT---
droTak1 scf7180000410831:7236-7569 - CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAAAA--C---AGAA---G------------A---AA----------------AGACTTTTAGCCA-----AAA-------------------------------------CAGT-----------------------------T-------GAGC-------TCTAGGC---------------------C-----------------A---------GA----AG---------TGAGG---TGTTCGTGCCGCTGAAA----CAACAAGTATCC----------------------------------------------------------------------------GCAGTACTTTCTCTT--TCGGTCGT--------------------CC----------------CGTCG----------------------GTTTTTC-----------------G---GTC------CCAGC--------GT-------------------------------------------------------------------------ATGTGCAA--GTGTGCGTGTGTGCT--GAGTGT----TGTGTGCGTGTTAGCCAA-----------------------------------------------------------------------------------CTG---------------TGT-TTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTG--TACTATCGCCCG---CTC--CGCTTT-------------------------------------------TTTGT----------GCAC---------------------------------A-----------CTTGTAA----------CTCTG-GAAACACTTT
droEle1 scf7180000491214:4150428-4150781 + CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAAAATAAAC---------------------T---AT----------------AGAC--TCATC-ACAACAGAA-------------------------------------CAG-----------C------------------TGAGAACTG------------AAAGC---------------------C-GTT----------GG-A---------GA-----A---------AGAGG---TGTTCGTGCCGCTGAAA----CAACAAGTATCC----------------------------------------------------------------------------ACAGTACTTTCTCTT--TCGGTCGAG---TGTC--------------------------------CAAATTCAAATCCAAATCCCAATCCAA------A------------------------------AGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTAGCCAACAAAAATC---------CGAGTGCGCGCGT----------------GTGTGTGT---GCC------------GTGC------GC-----------------TGTATTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTC--TACTATCGCCCGCTGCTC--CGC----------------------------------------------TTTGT----------GTA----------------------------------------------CTTGTTA----------CTCTG-GAAAGTT--T
droRho1 scf7180000776849:534906-535263 - CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAAAA--AAA---------------------A---AA---CCA---AAACTATAGAC--TCATC-A---------------------------------------------CAACAGAACAACAGC------------------T-------GAAC-------TCTAAGC---------------------C-GTCATA--------------------GA-----A---------AGAGG---TGTTCGTGCCGCTGAAA----CAACAAGTATCC----------------------------------------------------------------------------ACAGTACTTTCTCTT--TCGGTCGAG---TGTC--------------------------------CAAA------------------TCCAA------C------------------------------AGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTAGCCAACAAAAATTTTAGAAAAAC----GCGCGCGT----------------GTGTGTG------C------------GTGCGCGCT-GT-----------------TGTGTGTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTC--TGCTATCGCCCGCTGCTC--CGT----------------------------------------------TTTGT----------GTACTT--G-------------------T-------AA-----------CTTGTAA----------CTCTG-GAAAGTT---
droFic1 scf7180000453342:645610-645947 - CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAGAA--A-ACAGAG---GCAACTGAAGAAA---------------------CAGAC--TTATC-A-----AAA-------------------------------------CAG-----------------------GAACTTCT-------GAGC-------TCTGGCC---------------------C-GTAACA--AGTGTGGCCGAAAAG---GC----GG---------AGAGG---TGTTCGTGCCGCAGAAA----CAACAAGTATCC----------------------------------------------------------------------------GCAGTGCTTTCTCTT--TCGGTCGGTCGGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGGCCAACTAA-GCC---------CGGGCGCGCGTGTGTATGTGCTTG--------------------------------TG---------TG---------------TGTGTGTGAATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTC--CACTATCGCCCGCCGCTC--CGC-----------------------------------------------TTCT----------GTA----------------------------------------------CTTGTAA----------CTCTG-GGGGA-----
droKik1 scf7180000302476:314274-314673 + CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAAAC--AAACAGAC-CCACAAGCCA---AG--------------------------------------------------------------------------------G---AGAAGAATAA------------------------------C-------TCTAAACAGACCAA--GGCCCGGAGCC-C-GTAACA--AGTGTGACCA-AAAGGCAATAGA-AGCGCACAGCTCCAAG---TGTTCGTGCCGCCGGAA----CAACAAGTA-------------------------------------------------------------------------------ACAGTACTTTCGCTC--TCGA---GCCCGA-------------------------------------------------------------C------AAGTGTGTCCG--------------TGTCGGTGTGCGTG---------------------------------------------------------------------------------------------------TGCC--G--------------------------------------------------------T----------------GTGT-------GGTGTGCGGTGTGT-GTGC--------TT---------------TGTGTGTTGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTG--TGCTATCGCC----GCAC--CGT--------------------TTCGTTACGTTCCCCCTTCGGTTCCGTTTGTGTTGTGTTGTGTGTT---GTG---------------------------------------TTGTT--------AAACTCTG-GAAAGTTT-T
droAna3 scaffold_13266:7705220-7705667 + CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCTCGGCAAAC--A----------------------------------------------GAC--CTAACCA-----------TCCAATTGTGAGCGAA--------------------------GAAGAGC----------------------ACTCTGAC-------TCTAAGCCAAT----------------------------------CCT-GAAGGT---------------------------------TCGGCTTCAC----CA-AAAGTCCATAACAA-----------------------------AAAAGTGGAAGTGTTCGTGTTCGGCGTGTAGTTGCCAGT---AAATCACTTTCTCTT--CGAGTT-----------------------------------------------------------------------TTGA-----------------G---TTTGTGTTCGTGTGTG----T--------------------------CGGAG--TGTGGCAGTGTGTTAGTGGGCTAGTGTGTGCGTGGTCCACTTACCTGCAAGGGTGTGC---------------------------------------------------------------G----T----------------GCGT-------GGT------------GTGCGGTG-TGTTG---------------TGTGTTTTGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAAATTTT--TATTATCGCCAAC---G---CGT---------TGGCCATTCGTTTCGTTTCGTTT-------GGTTCCGTTTGT----------GCA--------------------------------GGACTCGCACAACTCTTGCAA----------CTCTT-GAAACTC--A
droBip1 scf7180000396759:1117863-1118318 - CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCTCGGCAAAC--A----------------------------------------------GAC--CTAACCA-----------TCGAATTGTGAGCGAA--------------------------GAAGAGC----------------------ACCTTGAC-------TCTAAGCCAAT----------------------------------CCT-GAAGGT---------------------------------TCGGCTTCAC----CAAAAAGTCCGTCACAA-----------------------------AA-AGTGGAAGTGTTCGTGTTCGACGAGTTGTTGCCAGT---AAATCACTTTCTCTT--CGAGTT-----------------------------------------------------------------------TTGA-----------------G---TTTGTGTTCGTGT--------GTGTG----------------TGTGTGGGCCAGTGCGGCAGTGTGTTAGTGGGCTAGTGTGTGCGTGGTCCACTTACGTGCGAGGGTGTGC-------------------------------------------------------------------GT----------------GCGT-------GGT------------GTGT------GGTG---------------TATGTTTTGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAAATTTT--TATTATCGCCAAC---C---CGT---------TGGCCATTCGTTTCGTTGCGTTT--GGTTCCGTTCCGTTTGT----------GCA--------------------------------GGACTCGCACAACTCTTGCAA----------CTCTT-GAAACTC--A
dp5 3:11929481-11929920 + CAGTCGCTAGCTGGACGTGATGTTGGCCGGAACGGCACCACGGAAAAT--A----GAA---ACAAGCCG---AA---------------------CAGTC--TTAAC-A----------ATC-AGTCCCGAGACGA-----------------------------------------------------------CAAC-------ACCAGTC---------------------CAGTAACA--AGTGTGGCCT-GGAGGCAGT----A--------------C---TTTTTTAGCCGCTGAAA----CAACAAGTACCTAACCG-----------------------------AACCGAG-------------------------------CTAAACAGAACTTTCCTTTTTTCCGTTCGCCGTTC---------GCCGTTT----------------G--C----------------------------------------------CGTTCG-C------C--G----------TGTG--------------------------------------------------------TGTGTGGCCCGCTTACATAC--GGCTGTGCGTGTGTT---------------CCGTG---------------------------------------------------TGTGTGC------------------ACTGGGTG-TGCGTGT-----GTG-------------T-TGTGTAGATGCAAATCAAAGCGCAGCACACCTGAAAAGTATGCTTTAAA-TGTT--AACTATCGCGAGC---CC--CGT---TGAA------G---------------------------------TTGT----------GTATTCGAGACTCGTTACTCGTAGCTCGTAACTCGTGCCCCGCGCAA--CCTGTAA----------CTCTG-GAAAGTT--T
droPer2 scaffold_44:141585-142022 + CAGTCGCTAGCTGGACGTGATGTTGGCCGGAACGGCACCACGGAAAAT--A----GAA---ACAAGCCG---AA---------------------CAGTC--TTAAC-A----------ATC-AGTCCCGAGACGA-----------------------------------------------------------CAAC-------ACCAGTC---------------------CAGTAACA--AGTGTGGCCT-GGAGGCAAT---------------------TCTTTTTTAGCCGCTGAAA----CAACAAGTACCTAACCG-----------------------------AACCGAG-------------------------------CTAAACAGAACTTTCCTTTTTTCCGTTCGCCGTTT---------GCCGTTT----------------G--C----------------------------------------------CGTTTG-C------C--G----------TGTG--------------------------------------------------------TGTGTGGCCCGCTTACATAC--GGCTGTGCGTGTGTT---------------CCGTG---------------------------------------------------TGTGTGC------------------ACTGGGTG-TGCGTGT-----GTG-------------T-TGTGTAGATGCAAATCAAAGCGCAGCACACCTGAAAAGTATGCTTTAAA-TGTT--AACTATCGCGAGC---CC--CGT---TGAA------G---------------------------------TTGT----------GTATT--AGACTCGTTACTCGTAGCTCGTAACTCGTGCCCCGCGCAG--CCTGTAA----------CTCTG-GAAAGTT--T
droWil2 scf2_1100000004954:3113752-3114149 - CAGTCGCTAGCTGGACGTGATGTTGGCCGCAAGGGCGCCACGGCAAAC--AAT---------------------TCATAC----------------AAAG--TCGACCA-----AAA-------------------------------------T--C----GA--AA------------------------------CTTTCACCTATAAACAGAGTAACCGAACCGAAACAATAGTAACA--AGTGTGGCCT-GAAGGCAAAAGAAAG---------TCAAG---T-TTTTTGCCGCTGAAAC---CAACAAGTACCTAACAACTCTCTTTGTAAGCGTCGTGAGTGTGTAAAA-AGT----------------------------------------------------------------------------------------------------GTC----------------------------------------AGTGTTTTTGTGTG------CGGGT--------GTGTG----------------TGTG-------------------------------------------------------------TGTGC---------------------------------------------------------------G----T--------ATGT----GTGT--G-TGA----------GGGTG-TGC---------G---------------TGTGTGTGGATGCAAATCAAAGCGCAGCACACCTGAAAAATATGCTTTAGA-TTTT--TATTATCGCGA---------CGT---T-----TGACG-----TTT----------------------CGTTTGT----------GTAT---------------------------------------------CGTGTAACTGGGTAAAAGTCGACAAAAGT--CG
droVir3 scaffold_12875:20281657-20281966 + CAGTCGCTAGCTGGACGTGATGTTGGCCGCAAGGGCGCCACGGCATAA---AC---------------------C---AA----------------AGAC--CAA---------------------------------AGAGGACA-AGCTAAATG-----------------------------------------------------------------------------------------------CCT-GAAGGCAG---------------------CTC----ATTGCCGCTGAAA----CAACAAGTACCTAAC---------------------------------------------------------------------------TG--TTT-GTA--------------------------------------------------------------------------------------------------------TG----TGTGGGTGTGTGTG--TGTGTG----------------------------TGTGTCTGCGTGT-------------------------------------------A---------------------------------------------------------C------G----T--------ATGC----GTGT--G-TGT----------TC---GTGCGCGCG-TCTG-----------TG--TCAGTGTGAGTG-----CAATGTGCAGCATAGCTAAAAAGTATGCTTTAGA-ATTT--TATTATCGCGCGC---GTTACGT---T-----TGACG-----TTT-----------------CGTTACGTTTCG----------GCC---------------------------------GA-----------CTCGCAA----------CTTTG-TGAAGTT---
droMoj3 scaffold_6496:5885348-5885652 - CAGTCGTTAGCTGGACGTGATGTTGGCCGCAAGGGCGCCACGGCATAA--AGA-------------------------CC----------------ACAT--TAAGACC-----AAACGACC------------AAAAAGAGAACAAAGCCAAAAG-----------------------------------------------------------------------------------------------CCT-GAAGGCATT----G---------------CCC----ATTGCCGCTGAAA----CAACAAGTACCTAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--------GTGTGCGTGTGCGTGAGTGTGTGTGTGTGCGAG----------------------------------------------------------------------------------------------------------------------------------------TGC----GAGT--G-CAA----------G-----TGCAAG--TGCAA--CTACAAGTGTGCAAGTGTGTTGATGGCTATCAAAGTGCAGCATAGCTAAAAAGTATGCTTTAGA-ATTC--TATTAACGCGCGC---GCAACGT---------GGACG-----TTT------------------------------------------------------------------------------------------------------------CG-TGAAGTTCTT
droGri2 scaffold_15245:11264628-11264956 - CAGTCGCTAGCTGGACGTGATGTTGGCCGCAAGGGCGCCACGGCATAA--A-C---------------------A---AA----------------AGAC--CAA---------------------------------AGAGGACA-AGCCAAATG-----------------------------------------------------------------------------------------------CCT-GAAGGCAG---------------------CTC----ATTGCCGCTGAAA----CAACAAGTACCTAA---------------------------------------------------------------------------CAGCTCTCTGTCTG--TGTG----------------------------------------------------------------------------------------------------------TGTGTGTGTG--T---------------------------GGTGTGTGCGTTTGCGTGT--CTGTGCTAGTGTGTGTG-------------------------------TT---------------GCGTG---------------------------------------------------TAT----GTGT-----------------GCGAA-TGCGAG--TGCAA---------------TGT-TTTAGATGGCTATCAAAGTGCAGCATAGCTAAAAAGTATGCTTTAGA-TTAT--AATTATCGCGCGC---GCAACGC---TAAAGTTGACGT-------------------------------GTTGT----------TTC----------------------------------------------TTTGCGT----------TTCGG-CCAACTCGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGAGCAGCACGGCAAAC--AAG---------------------T---AA----------------AGAC--TTAGCCA-----AAA-------------------------------------CAGCTGAACAGTAGCT-----GAGCTG----------AACTGAAC-------TCCAGGC---------------------C-GTAACA--AGTGTGGCA---------GT----AG---------CAAGG---TGTTCGTGCCACTGAAA----CAACAAGTATCC----------------------------------------------------------------------AGC---ACAGTACTTTCTCTT--TCGGTTAGTCGGTCGGTCGGTTGGTCGTTT----------------GGTC----------------------------------------------GGTTTGTC------CGAGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTGGCCACCTAA-GTC---------CGGGTGCGTGCGT----------------GTGT----------------------GTGCGCGCTAGCTG---------------TGTTTTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTT--TACTATCGCC----GCTC--CGC-----------------------------------------------GTGT----------GTA----------------------------------------------CTTGTAA----------CTCTG-GAAAGTTTCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................CT-----GAGCTG----------AACTGAAC-------TC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00330000000000000000
..................................................................................................................................................................................CTG----------AACTGAAC-------TCCAGGC---------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
.......................................................................................................................................................................GCT-----GAGCTG----------AACTGAAC-------TC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCTG---------------TGTTTTTGGATG....................................................................................................................................................................................................................1921.00200002000000000000
......................................................................................................................................................................AGCT-----GAGCTG----------AACTGAAC-------TCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
..............................................................................................................................................................TGAACAGTAGCT-----GAGCTG----------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGCGT----------------GTGT----------------------GTGCGCGC.....................................................................................................................................................................................................................................................2211.00100001000000000000
.................TGATGTTGGCCGGAAGAGCAGCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
...TCGCTAGCTGGACGTGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
...................................................................................................................................................................................TG----------AACTGAAC-------TCCAGGC---------------------C-GTAACA--AGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
.................TGATGTTGGCCGGAAGAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
..............ACGTGATGTTGGCCGGAAGAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGTCGGTCGGTTGGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.20200000000001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTGGC........................................................................................................................................................................................................................................................................................................................................1670.14100000000001000000
droSec2
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGAGCAGCACGGCAAAC--AAG---------------------T---AA----------------AGAC--TTAGCCA------AA-------------------------------------CAGCTGAACAGTAGCT-----GAGCTG----------AATTGAAC-------TCCAGGC---------------------C-GTAACA--AGTGTGGCA---------GT----AG---------CTAGG---TGTTCGTGCCACTGAAA----CAACAAGTATCC----------------------------------------------------------------------AGC---ACAGTACTTTCTCTT--TCGGTTAGTCGGTCGGTCGGTTGGTCGTTT----------------GGTC----------------------------------------------GGTTTGTC------CGAGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTGGCCAGCTAA-GTC---------CGGGTGCGTGCGT----------------GTGT----------------------GTGCGCGCTAGCTG---------------TGTTTTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTT--TACTATCGCC----GCTC--CGC-----------------------------------------------GTGT----------GTA----------------------------------------------CTTGTAA----------CTCTA-AAAAGTTTCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................TGATGTTGGCCGGAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0021001
.............................................................................................................................................................CTGAACAGTAGCT-----GAGCTG----------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.................TGATGTTGGCCGGAAGAGCAGCACGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
.................................AGCAGCACGGCAAAC--AAG---------------------T---AA----------------AGAC--T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
.................TGATGTTGGCCGGAAGAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...................ATGTTGGCCGGAAGAGCAGCACGGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010001
...................................................................................................C--TTAGCCA------AA-------------------------------------CAGCTGAACAGTAGCT-----GA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010001
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGTCGGTCGGTTGGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.5030201
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGTCGGTCGGTTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18130.0810010
dm3
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGAGCAGCACGGCAAAC--AAA---------------------T---AA----------------AGAC--TTAGCCA-----AAA-------------------------------------CAGCTGAACAATAGCT-----GAGCTG----------AACTGAAC-------TCCAGGC---------------------C-GTAACA--AGTGTGGCA---------GT----AG---------TTAGG---TGTTCGTGCCGCTGAAA----CAACAAGTATCC----------------------------------------------------------------------AGC---ACAGTACTTTCTATT--TCGGTTAGTCGGTCGGTCGGTTGGTCGTTT----------------GGTC----------------------------------------------GGTTTGTC------CGAGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTGGCCACCTAA-GTC---------CTGGTGCGTGCGT----------------GTGT----------------------GTGCGCGCTAACTG---------------TGTTTTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTT--TACTATCGCC----ACTC--CGC-----------------------------------------------GTGT----------GTA----------------------------------------------CTTGTAA----------CTCTG-AAAAGTTTCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........AGCTGGACGTGATGTTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GCCGCTGAAA----CAACAAGTATCC----------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-GTC---------CTGGTGCGTGCGT----------------GTGT----------------------GT...........................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................GATGTTGGCCGGAAGAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................TGATGTTGGCCGGAAGAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTC------CGAGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTGGCCACC....................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGTCGCTAGCTGGACGTGATGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............ACGTGATGTTGGCCGGAAGAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGTCGCTAGCTGGACGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.................TGATGTTGGCCGGAAGAGCAGCACGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................................................................................................................................................................................................................................C-GTAACA--AGTGTGGCA---------GT----AG---------TTAGG---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---------CTGGTGCGTGCGT----------------GTGT----------------------GTGC.........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................................GTAACA--AGTGTGGCA---------GT----AG---------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTCGCTAGCTGGACGTGATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCTATT--TCGGTTAGTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TGATGTTGGCCGGAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCGTGCGT----------------GTGT----------------------GTG..........................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
droEre2
CAGTCGCTAGCTGGACGTGGTGTTGGCCGGAAGAGCAGCACGGCAAAC--AAG---------------------T---GA----------------AGAC--TTAGCCA-----AAA-------------------------------------CAGCTGAACAGGAGCT-----GAGCTG----------AACTGAAC-------TCCAGGC---------------------C-GTAACA--AGTGTGGCA---------GT----AG---------TGAGG---TGTTCGTGCCGCTGAAACAAACAACAAGTATCC----------------------------------------------------------------------AGC---ACAGTACTTTCTCTT--TCGGTTAGTCGGTCGGTCGGTTGGTCGGTTGGTCGCTTGGTCGCTTGGTC----------------------------------------------GGTTTGGC------CGAGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTGGCCAACTAA-ATC---------CGGGTGCGTGCGT----------------GTGTGTG------T---------GT-GCGCGCGCTCGCTG---------------TGTTTTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTT--TACTATCGCC----GCTC--CGCCT--GTA------CT-------------------------------CCTGT----------GTA----------------------------------------------CTTGTAA----------CTCTG-GAAAGTTTCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.AGTCGCTAGCTGGACGTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCGGTTGGTCGCTTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000
....................TGTTGGCCGGAAGAGCAGCACGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.....................GTTGGCCGGAAGAGCAGCACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
.........................................GGCAAAC--AAG---------------------T---GA----------------AGAC--T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
......................................CACGGCAAAC--AAG---------------------T---GA----------------AGAC--TTAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTC----------------------------------------------GGTTTGGC------CGAGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TG.............................................................................................................................................................................................................................................................................................................................................2611.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------------------------------GGTTTGGC------CGAGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTGGCC.......................................................................................................................................................................................................................................................................................................................................2911.0010100000
.AGTCGCTAGCTGGACGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.AGTCGCTAGCTGGACGTGGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
...TCGCTAGCTGGACGTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
..GTCGCTAGCTGGACGTGGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
droYak3
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGAGCAGCACGGCAAAC--CAG---------------------T---AA----------------AGAC--TTAGCCA-----AAA-------------------------------------CAGCTGAACAGGAGCTGAACTGAGCTG----------AACTGAAC-------TCCAGGC---------------------C-GTAACA--AGTGTGGCA---------GT----AG---------TGAGG---TGTTCGTGCCGCTGAAA----CAACAAGTATCC----------------------------------------------------------------------AGC---ACAGTACTTTCTCTT--TCGGTTAGTCCGTCGGTCGGTTGGTCGCTT--------GGTCCGTTGGTC----------------------------------------------GGTTTGGC------CGAGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTGGCCAACTAA-ATC---------CGGGTGCGTGCGTGTATGCGTTAGTGTG-------------------AGTGTGT-GTGCGCGCTCGCTG---------------TGTTTTTGAATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTT--TACTATCGCC----GCAC--CGC-----------------------------------------------CTGT----------GTA----------------------------------------------CTTGTAA----------CTCTG-GAAAGTTTCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCTCACCTGAAAAGTA......................................................................................................................................................................................2011.00101000000000
.AGTCGCTAGCTGGACGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.................TGATGTTGGCCGGAAGAGCAGCACGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
..................GATGTTGGCCGGAAGAGCAGCACGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
droEug1
TAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAAAC--C----CAA---AA---------AA----GAAAACCATCAA------AAACTCTTTA------------------------------------------------------------------------CTG----------AA--TAAC-------TCTAAGC---------------------C-GTAACAAAAGTGTGGCA---------AC----AG---------TGAGG---TGTTCGTGCCGTTGAAA----CAACAAGTATCC----------------------------------------------------------------------------GCAGTACTTTCTCTT--TCGGTCGT--------------------TT-----------------------------------------CCAG------TAGTGTATGCG--------------TGTTTGAGTGTGTGTGT--------------------------T------------------------------------------------------------------------T--GTGTGTGGCATGTGTGCGTGTTAGCCAACTGA-ATC---------GTAGTGCGCGTGT----------------G--------------------------TGCG-------TT---------------TGT-TTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-ATTTCGTACTTTCG-------------------------------------------------------------TTTGT----------GTA----------------------------------------------CTTGTAA----------CTCTG-GAAAGTTTGTSizeHit CountTotal NormTotal
No Reads
droBia1
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAAAC--AAGCAGAGACCAGAACCCG---GA---------CAGGCAA------AGACTCTTAGCCA------AA-------------------------------------CAGC-----------------------------T-------GAAC-------TCTGGGC---------------------C-GTAACA--AGTGCGGCA---------GA----AG---------TGGGG---TGTTCGTGCCGCCGAAA----CAACAAGTATCC----------------------------------------------------------------------------GCAGTACTTTCTCTT--TCGCTCGGT---TCCCTCGGTTC------------------------------------------------------TTCG-----------------G---TCCGTGTACGTGCGTG---------------------------------------------------------------------------------------------------TGTG-TGAGTGTGT----TGTGTGCGTGTCAGCCCAGTAA-ATC---------C----------------------------------------------------------------GCCG---------------TGT-TTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTG--TCCTATCGCCCG---CTC--CGCTTT-------------------------------------------TTTGT----------GCG----------------------------------------------CTTGTAA----------CTCTG-GTAACTT---SizeHit CountTotal NormTotal
No Reads
droTak1
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAAAA--C---AGAA---G------------A---AA----------------AGACTTTTAGCCA-----AAA-------------------------------------CAGT-----------------------------T-------GAGC-------TCTAGGC---------------------C-----------------A---------GA----AG---------TGAGG---TGTTCGTGCCGCTGAAA----CAACAAGTATCC----------------------------------------------------------------------------GCAGTACTTTCTCTT--TCGGTCGT--------------------CC----------------CGTCG----------------------GTTTTTC-----------------G---GTC------CCAGC--------GT-------------------------------------------------------------------------ATGTGCAA--GTGTGCGTGTGTGCT--GAGTGT----TGTGTGCGTGTTAGCCAA-----------------------------------------------------------------------------------CTG---------------TGT-TTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTG--TACTATCGCCCG---CTC--CGCTTT-------------------------------------------TTTGT----------GCAC---------------------------------A-----------CTTGTAA----------CTCTG-GAAACACTTTSizeHit CountTotal NormTotal
No Reads
droEle1
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAAAATAAAC---------------------T---AT----------------AGAC--TCATC-ACAACAGAA-------------------------------------CAG-----------C------------------TGAGAACTG------------AAAGC---------------------C-GTT----------GG-A---------GA-----A---------AGAGG---TGTTCGTGCCGCTGAAA----CAACAAGTATCC----------------------------------------------------------------------------ACAGTACTTTCTCTT--TCGGTCGAG---TGTC--------------------------------CAAATTCAAATCCAAATCCCAATCCAA------A------------------------------AGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTAGCCAACAAAAATC---------CGAGTGCGCGCGT----------------GTGTGTGT---GCC------------GTGC------GC-----------------TGTATTTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTC--TACTATCGCCCGCTGCTC--CGC----------------------------------------------TTTGT----------GTA----------------------------------------------CTTGTTA----------CTCTG-GAAAGTT--TSizeHit CountTotal NormTotal
No Reads
droRho1
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAAAA--AAA---------------------A---AA---CCA---AAACTATAGAC--TCATC-A---------------------------------------------CAACAGAACAACAGC------------------T-------GAAC-------TCTAAGC---------------------C-GTCATA--------------------GA-----A---------AGAGG---TGTTCGTGCCGCTGAAA----CAACAAGTATCC----------------------------------------------------------------------------ACAGTACTTTCTCTT--TCGGTCGAG---TGTC--------------------------------CAAA------------------TCCAA------C------------------------------AGT--------GTGTG----------------------------------------------------------CG-------------------------------------------------------TGTTAGCCAACAAAAATTTTAGAAAAAC----GCGCGCGT----------------GTGTGTG------C------------GTGCGCGCT-GT-----------------TGTGTGTGGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTC--TGCTATCGCCCGCTGCTC--CGT----------------------------------------------TTTGT----------GTACTT--G-------------------T-------AA-----------CTTGTAA----------CTCTG-GAAAGTT---SizeHit CountTotal NormTotal
No Reads
droFic1
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAGAA--A-ACAGAG---GCAACTGAAGAAA---------------------CAGAC--TTATC-A-----AAA-------------------------------------CAG-----------------------GAACTTCT-------GAGC-------TCTGGCC---------------------C-GTAACA--AGTGTGGCCGAAAAG---GC----GG---------AGAGG---TGTTCGTGCCGCAGAAA----CAACAAGTATCC----------------------------------------------------------------------------GCAGTGCTTTCTCTT--TCGGTCGGTCGGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGGCCAACTAA-GCC---------CGGGCGCGCGTGTGTATGTGCTTG--------------------------------TG---------TG---------------TGTGTGTGAATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTC--CACTATCGCCCGCCGCTC--CGC-----------------------------------------------TTCT----------GTA----------------------------------------------CTTGTAA----------CTCTG-GGGGA-----SizeHit CountTotal NormTotal
No Reads
droKik1
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCACGGCAAAC--AAACAGAC-CCACAAGCCA---AG--------------------------------------------------------------------------------G---AGAAGAATAA------------------------------C-------TCTAAACAGACCAA--GGCCCGGAGCC-C-GTAACA--AGTGTGACCA-AAAGGCAATAGA-AGCGCACAGCTCCAAG---TGTTCGTGCCGCCGGAA----CAACAAGTA-------------------------------------------------------------------------------ACAGTACTTTCGCTC--TCGA---GCCCGA-------------------------------------------------------------C------AAGTGTGTCCG--------------TGTCGGTGTGCGTG---------------------------------------------------------------------------------------------------TGCC--G--------------------------------------------------------T----------------GTGT-------GGTGTGCGGTGTGT-GTGC--------TT---------------TGTGTGTTGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAA-TTTG--TGCTATCGCC----GCAC--CGT--------------------TTCGTTACGTTCCCCCTTCGGTTCCGTTTGTGTTGTGTTGTGTGTT---GTG---------------------------------------TTGTT--------AAACTCTG-GAAAGTTT-TSizeHit CountTotal NormTotal
No Reads
droAna3
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCTCGGCAAAC--A----------------------------------------------GAC--CTAACCA-----------TCCAATTGTGAGCGAA--------------------------GAAGAGC----------------------ACTCTGAC-------TCTAAGCCAAT----------------------------------CCT-GAAGGT---------------------------------TCGGCTTCAC----CA-AAAGTCCATAACAA-----------------------------AAAAGTGGAAGTGTTCGTGTTCGGCGTGTAGTTGCCAGT---AAATCACTTTCTCTT--CGAGTT-----------------------------------------------------------------------TTGA-----------------G---TTTGTGTTCGTGTGTG----T--------------------------CGGAG--TGTGGCAGTGTGTTAGTGGGCTAGTGTGTGCGTGGTCCACTTACCTGCAAGGGTGTGC---------------------------------------------------------------G----T----------------GCGT-------GGT------------GTGCGGTG-TGTTG---------------TGTGTTTTGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAAATTTT--TATTATCGCCAAC---G---CGT---------TGGCCATTCGTTTCGTTTCGTTT-------GGTTCCGTTTGT----------GCA--------------------------------GGACTCGCACAACTCTTGCAA----------CTCTT-GAAACTC--ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............GGACGTGATGTTGGCCGGAAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000002
...............CGTGATGTTGGCCGGAAGGGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.................................................................................................GAC--CTAACCA-----------TCCAATTGTGAGCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.....................GTTGGCCGGAAGGGCAGCTCGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..............ACGTGATGTTGGCCGGAAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACTTACCTGCAAGGG.................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droBip1
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAAGGGCAGCTCGGCAAAC--A----------------------------------------------GAC--CTAACCA-----------TCGAATTGTGAGCGAA--------------------------GAAGAGC----------------------ACCTTGAC-------TCTAAGCCAAT----------------------------------CCT-GAAGGT---------------------------------TCGGCTTCAC----CAAAAAGTCCGTCACAA-----------------------------AA-AGTGGAAGTGTTCGTGTTCGACGAGTTGTTGCCAGT---AAATCACTTTCTCTT--CGAGTT-----------------------------------------------------------------------TTGA-----------------G---TTTGTGTTCGTGT--------GTGTG----------------TGTGTGGGCCAGTGCGGCAGTGTGTTAGTGGGCTAGTGTGTGCGTGGTCCACTTACGTGCGAGGGTGTGC-------------------------------------------------------------------GT----------------GCGT-------GGT------------GTGT------GGTG---------------TATGTTTTGATGCAAATCAAAGCGCAGCTCACCTGAAAAGTATGCTTTAAAATTTT--TATTATCGCCAAC---C---CGT---------TGGCCATTCGTTTCGTTGCGTTT--GGTTCCGTTCCGTTTGT----------GCA--------------------------------GGACTCGCACAACTCTTGCAA----------CTCTT-GAAACTC--ASizeHit CountTotal NormTotal
No Reads
dp5
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAACGGCACCACGGAAAAT--A----GAA---ACAAGCCG---AA---------------------CAGTC--TTAAC-A----------ATC-AGTCCCGAGACGA-----------------------------------------------------------CAAC-------ACCAGTC---------------------CAGTAACA--AGTGTGGCCT-GGAGGCAGT----A--------------C---TTTTTTAGCCGCTGAAA----CAACAAGTACCTAACCG-----------------------------AACCGAG-------------------------------CTAAACAGAACTTTCCTTTTTTCCGTTCGCCGTTC---------GCCGTTT----------------G--C----------------------------------------------CGTTCG-C------C--G----------TGTG--------------------------------------------------------TGTGTGGCCCGCTTACATAC--GGCTGTGCGTGTGTT---------------CCGTG---------------------------------------------------TGTGTGC------------------ACTGGGTG-TGCGTGT-----GTG-------------T-TGTGTAGATGCAAATCAAAGCGCAGCACACCTGAAAAGTATGCTTTAAA-TGTT--AACTATCGCGAGC---CC--CGT---TGAA------G---------------------------------TTGT----------GTATTCGAGACTCGTTACTCGTAGCTCGTAACTCGTGCCCCGCGCAA--CCTGTAA----------CTCTG-GAAAGTT--TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CAGTCGCTAGCTGGACGTGATGTTGGCCGGAACGGCACCACGGAAAAT--A----GAA---ACAAGCCG---AA---------------------CAGTC--TTAAC-A----------ATC-AGTCCCGAGACGA-----------------------------------------------------------CAAC-------ACCAGTC---------------------CAGTAACA--AGTGTGGCCT-GGAGGCAAT---------------------TCTTTTTTAGCCGCTGAAA----CAACAAGTACCTAACCG-----------------------------AACCGAG-------------------------------CTAAACAGAACTTTCCTTTTTTCCGTTCGCCGTTT---------GCCGTTT----------------G--C----------------------------------------------CGTTTG-C------C--G----------TGTG--------------------------------------------------------TGTGTGGCCCGCTTACATAC--GGCTGTGCGTGTGTT---------------CCGTG---------------------------------------------------TGTGTGC------------------ACTGGGTG-TGCGTGT-----GTG-------------T-TGTGTAGATGCAAATCAAAGCGCAGCACACCTGAAAAGTATGCTTTAAA-TGTT--AACTATCGCGAGC---CC--CGT---TGAA------G---------------------------------TTGT----------GTATT--AGACTCGTTACTCGTAGCTCGTAACTCGTGCCCCGCGCAG--CCTGTAA----------CTCTG-GAAAGTT--TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT--AGACTCGTTACTCGTAGCT........................................................2311.001100000
..................GATGTTGGCCGGAACGGCACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTTTTTCCGTTCGCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................................................................................................TTAAC-A----------ATC-AGTCCCGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
........................................................................AA---------------------CAGTC--TTAAC-A----------ATC-AG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.AGTCGCTAGCTGGACGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
droWil2
CAGTCGCTAGCTGGACGTGATGTTGGCCGCAAGGGCGCCACGGCAAAC--AAT---------------------TCATAC----------------AAAG--TCGACCA-----AAA-------------------------------------T--C----GA--AA------------------------------CTTTCACCTATAAACAGAGTAACCGAACCGAAACAATAGTAACA--AGTGTGGCCT-GAAGGCAAAAGAAAG---------TCAAG---T-TTTTTGCCGCTGAAAC---CAACAAGTACCTAACAACTCTCTTTGTAAGCGTCGTGAGTGTGTAAAA-AGT----------------------------------------------------------------------------------------------------GTC----------------------------------------AGTGTTTTTGTGTG------CGGGT--------GTGTG----------------TGTG-------------------------------------------------------------TGTGC---------------------------------------------------------------G----T--------ATGT----GTGT--G-TGA----------GGGTG-TGC---------G---------------TGTGTGTGGATGCAAATCAAAGCGCAGCACACCTGAAAAATATGCTTTAGA-TTTT--TATTATCGCGA---------CGT---T-----TGACG-----TTT----------------------CGTTTGT----------GTAT---------------------------------------------CGTGTAACTGGGTAAAAGTCGACAAAAGT--CGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTTGTGTG------CGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200020
..........................CCGCAAGGGCGCCACGGCAAAC--AAT---------------------TCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100001
...............CGTGATGTTGGCCGCAAGGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
........................................................................................................................................................................................................................................................................................................CGCTGAAAC---CAACAAGTACCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..............................................................................AC----------------AAAG--TCGACCA-----AAA-------------------------------------T--C----.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.....GCTAGCTGGACGTGATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.................TGATGTTGGCCGCAAGGGCGCCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
..................GATGTTGGCCGCAAGGGCGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT--------GTGTG----------------TGTG-------------------------------------------------------------TGTGC---------------------------------------------------------------G----........................................................................................................................................................................................................................................................................................................18200.05100001
droVir3
CAGTCGCTAGCTGGACGTGATGTTGGCCGCAAGGGCGCCACGGCATAA---AC---------------------C---AA----------------AGAC--CAA---------------------------------AGAGGACA-AGCTAAATG-----------------------------------------------------------------------------------------------CCT-GAAGGCAG---------------------CTC----ATTGCCGCTGAAA----CAACAAGTACCTAAC---------------------------------------------------------------------------TG--TTT-GTA--------------------------------------------------------------------------------------------------------TG----TGTGGGTGTGTGTG--TGTGTG----------------------------TGTGTCTGCGTGT-------------------------------------------A---------------------------------------------------------C------G----T--------ATGC----GTGT--G-TGT----------TC---GTGCGCGCG-TCTG-----------TG--TCAGTGTGAGTG-----CAATGTGCAGCATAGCTAAAAAGTATGCTTTAGA-ATTT--TATTATCGCGCGC---GTTACGT---T-----TGACG-----TTT-----------------CGTTACGTTTCG----------GCC---------------------------------GA-----------CTCGCAA----------CTTTG-TGAAGTT---SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................A---AC---------------------C---AA----------------AGAC--CAA---------------------------------AGAGGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002020000000000000000000000000000000000000000000000000000000000000
..............................................AA---AC---------------------C---AA----------------AGAC--CAA---------------------------------AGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
...............CGTGATGTTGGCCGCAAGGGCGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000001000000
..............................................AA---AC---------------------C---AA----------------AGAC--CAA---------------------------------AGAGGACA-AGCTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000100000000000000000000000000000000000000000000
.................TGATGTTGGCCGCAAGGGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................AGCTAAATG-----------------------------------------------------------------------------------------------CCT-GAAGGCAG---------------------CT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
.................TGATGTTGGCCGCAAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000100
........................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------------------------------------------------------------------TG----TGTGGGTGTGTGTG--TG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000001000
droMoj3
CAGTCGTTAGCTGGACGTGATGTTGGCCGCAAGGGCGCCACGGCATAA--AGA-------------------------CC----------------ACAT--TAAGACC-----AAACGACC------------AAAAAGAGAACAAAGCCAAAAG-----------------------------------------------------------------------------------------------CCT-GAAGGCATT----G---------------CCC----ATTGCCGCTGAAA----CAACAAGTACCTAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--------GTGTGCGTGTGCGTGAGTGTGTGTGTGTGCGAG----------------------------------------------------------------------------------------------------------------------------------------TGC----GAGT--G-CAA----------G-----TGCAAG--TGCAA--CTACAAGTGTGCAAGTGTGTTGATGGCTATCAAAGTGCAGCATAGCTAAAAAGTATGCTTTAGA-ATTC--TATTAACGCGCGC---GCAACGT---------GGACG-----TTT------------------------------------------------------------------------------------------------------------CG-TGAAGTTCTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................C----------------ACAT--TAAGACC-----AAACGACC------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.........................GCCGCAAGGGCGCCACGGCATAA--AGA-------------------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
............................GCAAGGGCGCCACGGCATAA--AGA-------------------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------GTGTGCGTGTGCGTGAGTGTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.071000010
droGri2
CAGTCGCTAGCTGGACGTGATGTTGGCCGCAAGGGCGCCACGGCATAA--A-C---------------------A---AA----------------AGAC--CAA---------------------------------AGAGGACA-AGCCAAATG-----------------------------------------------------------------------------------------------CCT-GAAGGCAG---------------------CTC----ATTGCCGCTGAAA----CAACAAGTACCTAA---------------------------------------------------------------------------CAGCTCTCTGTCTG--TGTG----------------------------------------------------------------------------------------------------------TGTGTGTGTG--T---------------------------GGTGTGTGCGTTTGCGTGT--CTGTGCTAGTGTGTGTG-------------------------------TT---------------GCGTG---------------------------------------------------TAT----GTGT-----------------GCGAA-TGCGAG--TGCAA---------------TGT-TTTAGATGGCTATCAAAGTGCAGCATAGCTAAAAAGTATGCTTTAGA-TTAT--AATTATCGCGCGC---GCAACGC---TAAAGTTGACGT-------------------------------GTTGT----------TTC----------------------------------------------TTTGCGT----------TTCGG-CCAACTCGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.AGTCGCTAGCTGGACGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110

Generated: 05/19/2015 at 01:58 AM